Multiple sequence alignment - TraesCS5D01G082200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G082200 chr5D 100.000 2318 0 0 1 2318 84184677 84186994 0.000000e+00 4281
1 TraesCS5D01G082200 chr5D 82.171 129 22 1 468 596 84011506 84011633 2.440000e-20 110
2 TraesCS5D01G082200 chr5B 91.025 2362 155 32 1 2318 91111110 91113458 0.000000e+00 3134
3 TraesCS5D01G082200 chr5B 77.310 974 160 39 480 1421 91108349 91109293 3.410000e-143 518
4 TraesCS5D01G082200 chr5B 79.878 164 31 2 413 575 90987751 90987913 4.050000e-23 119
5 TraesCS5D01G082200 chr5A 91.411 1758 124 9 587 2318 78480210 78481966 0.000000e+00 2385
6 TraesCS5D01G082200 chr5A 90.894 604 37 8 1 598 78477923 78478514 0.000000e+00 795
7 TraesCS5D01G082200 chr5A 76.850 1054 179 42 408 1420 78425961 78426990 3.390000e-148 534
8 TraesCS5D01G082200 chr5A 74.364 511 84 29 468 948 78473941 78474434 8.510000e-40 174
9 TraesCS5D01G082200 chr5A 76.955 243 44 11 380 618 78368253 78368487 6.720000e-26 128
10 TraesCS5D01G082200 chrUn 80.000 845 126 30 666 1485 248123005 248122179 3.320000e-163 584
11 TraesCS5D01G082200 chrUn 80.026 781 122 24 695 1458 248126950 248126187 4.350000e-152 547
12 TraesCS5D01G082200 chrUn 82.353 153 23 4 2167 2318 339536333 339536482 1.870000e-26 130
13 TraesCS5D01G082200 chr2B 79.882 845 127 29 666 1485 654727152 654726326 1.540000e-161 579
14 TraesCS5D01G082200 chr2B 79.763 845 128 30 666 1485 654649570 654648744 7.180000e-160 573
15 TraesCS5D01G082200 chr2B 80.563 782 116 26 695 1458 654681787 654681024 9.290000e-159 569
16 TraesCS5D01G082200 chr2B 80.154 781 121 24 695 1458 654653516 654652753 9.360000e-154 553
17 TraesCS5D01G082200 chr2B 80.154 781 121 24 695 1458 654703619 654702856 9.360000e-154 553
18 TraesCS5D01G082200 chr4B 91.736 121 9 1 2198 2318 543282323 543282204 1.420000e-37 167
19 TraesCS5D01G082200 chr6D 90.000 120 12 0 2196 2315 332806831 332806950 3.080000e-34 156
20 TraesCS5D01G082200 chr6D 86.885 122 16 0 2197 2318 263437711 263437590 1.120000e-28 137
21 TraesCS5D01G082200 chr4D 90.083 121 11 1 2198 2318 439119791 439119672 3.080000e-34 156
22 TraesCS5D01G082200 chr4A 88.136 118 13 1 2198 2315 28555971 28555855 3.110000e-29 139
23 TraesCS5D01G082200 chr1B 86.885 122 16 0 2197 2318 104719580 104719459 1.120000e-28 137
24 TraesCS5D01G082200 chr1B 82.353 153 23 4 2167 2318 160482412 160482263 1.870000e-26 130


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G082200 chr5D 84184677 84186994 2317 False 4281.0 4281 100.000000 1 2318 1 chr5D.!!$F2 2317
1 TraesCS5D01G082200 chr5B 91108349 91113458 5109 False 1826.0 3134 84.167500 1 2318 2 chr5B.!!$F2 2317
2 TraesCS5D01G082200 chr5A 78473941 78481966 8025 False 1118.0 2385 85.556333 1 2318 3 chr5A.!!$F3 2317
3 TraesCS5D01G082200 chr5A 78425961 78426990 1029 False 534.0 534 76.850000 408 1420 1 chr5A.!!$F2 1012
4 TraesCS5D01G082200 chrUn 248122179 248126950 4771 True 565.5 584 80.013000 666 1485 2 chrUn.!!$R1 819
5 TraesCS5D01G082200 chr2B 654726326 654727152 826 True 579.0 579 79.882000 666 1485 1 chr2B.!!$R3 819
6 TraesCS5D01G082200 chr2B 654681024 654681787 763 True 569.0 569 80.563000 695 1458 1 chr2B.!!$R1 763
7 TraesCS5D01G082200 chr2B 654648744 654653516 4772 True 563.0 573 79.958500 666 1485 2 chr2B.!!$R4 819
8 TraesCS5D01G082200 chr2B 654702856 654703619 763 True 553.0 553 80.154000 695 1458 1 chr2B.!!$R2 763

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
273 274 0.032403 CGTCCAGTTCCGGTGTGTAA 59.968 55.0 0.0 0.0 0.0 2.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1691 14409 0.321741 TGCCCGGCGTGAGATTAAAA 60.322 50.0 6.01 0.0 0.0 1.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 8.942338 TGAACAATAGACGCTTTTCATATAGT 57.058 30.769 0.00 0.00 0.00 2.12
27 28 9.031360 TGAACAATAGACGCTTTTCATATAGTC 57.969 33.333 0.00 0.00 0.00 2.59
28 29 9.250624 GAACAATAGACGCTTTTCATATAGTCT 57.749 33.333 1.55 1.55 41.22 3.24
29 30 8.804688 ACAATAGACGCTTTTCATATAGTCTC 57.195 34.615 0.00 0.00 39.36 3.36
30 31 7.591795 ACAATAGACGCTTTTCATATAGTCTCG 59.408 37.037 0.00 0.00 39.36 4.04
31 32 5.752892 AGACGCTTTTCATATAGTCTCGA 57.247 39.130 0.00 0.00 34.28 4.04
32 33 5.753744 AGACGCTTTTCATATAGTCTCGAG 58.246 41.667 5.93 5.93 34.28 4.04
33 34 5.297278 AGACGCTTTTCATATAGTCTCGAGT 59.703 40.000 13.13 0.00 34.28 4.18
34 35 5.274718 ACGCTTTTCATATAGTCTCGAGTG 58.725 41.667 13.13 1.95 0.00 3.51
35 36 4.147306 CGCTTTTCATATAGTCTCGAGTGC 59.853 45.833 13.13 6.98 0.00 4.40
36 37 4.446051 GCTTTTCATATAGTCTCGAGTGCC 59.554 45.833 13.13 1.86 0.00 5.01
37 38 3.898517 TTCATATAGTCTCGAGTGCCG 57.101 47.619 13.13 0.00 40.25 5.69
38 39 2.152016 TCATATAGTCTCGAGTGCCGG 58.848 52.381 13.13 0.00 39.14 6.13
39 40 1.880675 CATATAGTCTCGAGTGCCGGT 59.119 52.381 13.13 0.00 39.14 5.28
40 41 1.590932 TATAGTCTCGAGTGCCGGTC 58.409 55.000 13.13 0.00 39.14 4.79
41 42 1.437772 ATAGTCTCGAGTGCCGGTCG 61.438 60.000 13.13 4.70 39.14 4.79
42 43 2.511545 TAGTCTCGAGTGCCGGTCGA 62.512 60.000 13.13 14.14 43.97 4.20
43 44 3.429141 TCTCGAGTGCCGGTCGAC 61.429 66.667 13.13 7.13 41.41 4.20
44 45 4.813526 CTCGAGTGCCGGTCGACG 62.814 72.222 11.24 8.86 41.41 5.12
47 48 4.773117 GAGTGCCGGTCGACGTCC 62.773 72.222 10.58 0.59 42.24 4.79
55 56 4.668118 GTCGACGTCCCCGCCAAA 62.668 66.667 10.58 0.00 37.70 3.28
56 57 3.697747 TCGACGTCCCCGCCAAAT 61.698 61.111 10.58 0.00 37.70 2.32
57 58 2.744709 CGACGTCCCCGCCAAATT 60.745 61.111 10.58 0.00 37.70 1.82
58 59 2.329614 CGACGTCCCCGCCAAATTT 61.330 57.895 10.58 0.00 37.70 1.82
59 60 1.504900 GACGTCCCCGCCAAATTTC 59.495 57.895 3.51 0.00 37.70 2.17
60 61 1.929806 GACGTCCCCGCCAAATTTCC 61.930 60.000 3.51 0.00 37.70 3.13
61 62 1.974343 CGTCCCCGCCAAATTTCCA 60.974 57.895 0.00 0.00 0.00 3.53
62 63 1.319614 CGTCCCCGCCAAATTTCCAT 61.320 55.000 0.00 0.00 0.00 3.41
63 64 0.175531 GTCCCCGCCAAATTTCCATG 59.824 55.000 0.00 0.00 0.00 3.66
64 65 1.153389 CCCCGCCAAATTTCCATGC 60.153 57.895 0.00 0.00 0.00 4.06
65 66 1.153389 CCCGCCAAATTTCCATGCC 60.153 57.895 0.00 0.00 0.00 4.40
66 67 1.153389 CCGCCAAATTTCCATGCCC 60.153 57.895 0.00 0.00 0.00 5.36
67 68 1.616091 CCGCCAAATTTCCATGCCCT 61.616 55.000 0.00 0.00 0.00 5.19
68 69 0.460635 CGCCAAATTTCCATGCCCTG 60.461 55.000 0.00 0.00 0.00 4.45
69 70 0.903942 GCCAAATTTCCATGCCCTGA 59.096 50.000 0.00 0.00 0.00 3.86
70 71 1.278699 GCCAAATTTCCATGCCCTGAA 59.721 47.619 0.00 0.00 0.00 3.02
71 72 2.678769 GCCAAATTTCCATGCCCTGAAG 60.679 50.000 0.00 0.00 0.00 3.02
72 73 2.833338 CCAAATTTCCATGCCCTGAAGA 59.167 45.455 0.00 0.00 0.00 2.87
73 74 3.261390 CCAAATTTCCATGCCCTGAAGAA 59.739 43.478 0.00 0.00 0.00 2.52
74 75 4.080751 CCAAATTTCCATGCCCTGAAGAAT 60.081 41.667 0.00 0.00 0.00 2.40
75 76 4.748277 AATTTCCATGCCCTGAAGAATG 57.252 40.909 0.00 0.00 0.00 2.67
76 77 2.905415 TTCCATGCCCTGAAGAATGT 57.095 45.000 0.00 0.00 0.00 2.71
77 78 2.905415 TCCATGCCCTGAAGAATGTT 57.095 45.000 0.00 0.00 0.00 2.71
78 79 4.314522 TTCCATGCCCTGAAGAATGTTA 57.685 40.909 0.00 0.00 0.00 2.41
79 80 4.524802 TCCATGCCCTGAAGAATGTTAT 57.475 40.909 0.00 0.00 0.00 1.89
80 81 4.464008 TCCATGCCCTGAAGAATGTTATC 58.536 43.478 0.00 0.00 0.00 1.75
81 82 4.079844 TCCATGCCCTGAAGAATGTTATCA 60.080 41.667 0.00 0.00 0.00 2.15
82 83 4.831155 CCATGCCCTGAAGAATGTTATCAT 59.169 41.667 0.00 0.00 35.59 2.45
83 84 5.278808 CCATGCCCTGAAGAATGTTATCATG 60.279 44.000 0.00 0.00 34.19 3.07
84 85 3.633525 TGCCCTGAAGAATGTTATCATGC 59.366 43.478 0.00 0.00 34.19 4.06
85 86 3.887716 GCCCTGAAGAATGTTATCATGCT 59.112 43.478 0.00 0.00 41.40 3.79
86 87 5.065914 GCCCTGAAGAATGTTATCATGCTA 58.934 41.667 0.00 0.00 38.89 3.49
87 88 5.532406 GCCCTGAAGAATGTTATCATGCTAA 59.468 40.000 0.00 0.00 38.89 3.09
88 89 6.293845 GCCCTGAAGAATGTTATCATGCTAAG 60.294 42.308 0.00 0.00 38.89 2.18
89 90 6.293845 CCCTGAAGAATGTTATCATGCTAAGC 60.294 42.308 0.00 0.00 38.89 3.09
90 91 6.261603 CCTGAAGAATGTTATCATGCTAAGCA 59.738 38.462 0.00 0.00 38.89 3.91
91 92 7.201758 CCTGAAGAATGTTATCATGCTAAGCAA 60.202 37.037 0.00 0.00 43.62 3.91
92 93 7.700505 TGAAGAATGTTATCATGCTAAGCAAG 58.299 34.615 0.00 0.00 43.62 4.01
93 94 7.553760 TGAAGAATGTTATCATGCTAAGCAAGA 59.446 33.333 0.00 0.00 43.62 3.02
94 95 7.256756 AGAATGTTATCATGCTAAGCAAGAC 57.743 36.000 0.00 0.00 43.62 3.01
95 96 6.261826 AGAATGTTATCATGCTAAGCAAGACC 59.738 38.462 0.00 0.00 43.62 3.85
96 97 4.199310 TGTTATCATGCTAAGCAAGACCC 58.801 43.478 0.00 0.00 43.62 4.46
97 98 1.959042 ATCATGCTAAGCAAGACCCG 58.041 50.000 0.00 0.00 43.62 5.28
98 99 0.107703 TCATGCTAAGCAAGACCCGG 60.108 55.000 0.00 0.00 43.62 5.73
99 100 1.452108 ATGCTAAGCAAGACCCGGC 60.452 57.895 0.00 0.00 43.62 6.13
100 101 1.915078 ATGCTAAGCAAGACCCGGCT 61.915 55.000 0.00 0.00 43.62 5.52
101 102 2.109126 GCTAAGCAAGACCCGGCTG 61.109 63.158 0.00 0.00 40.93 4.85
102 103 1.596934 CTAAGCAAGACCCGGCTGA 59.403 57.895 0.00 0.00 40.93 4.26
103 104 0.460987 CTAAGCAAGACCCGGCTGAG 60.461 60.000 0.00 0.00 40.93 3.35
104 105 2.521958 TAAGCAAGACCCGGCTGAGC 62.522 60.000 0.00 0.00 40.93 4.26
119 120 3.377759 AGCCGCTGAGCTCGACTT 61.378 61.111 9.64 0.00 39.48 3.01
120 121 2.883253 GCCGCTGAGCTCGACTTC 60.883 66.667 9.64 0.00 0.00 3.01
121 122 2.202676 CCGCTGAGCTCGACTTCC 60.203 66.667 9.64 0.00 0.00 3.46
122 123 2.568612 CGCTGAGCTCGACTTCCA 59.431 61.111 9.64 0.00 0.00 3.53
123 124 1.803519 CGCTGAGCTCGACTTCCAC 60.804 63.158 9.64 0.00 0.00 4.02
124 125 1.290324 GCTGAGCTCGACTTCCACA 59.710 57.895 9.64 0.00 0.00 4.17
125 126 1.011451 GCTGAGCTCGACTTCCACAC 61.011 60.000 9.64 0.00 0.00 3.82
126 127 0.389166 CTGAGCTCGACTTCCACACC 60.389 60.000 9.64 0.00 0.00 4.16
127 128 1.079750 GAGCTCGACTTCCACACCC 60.080 63.158 0.00 0.00 0.00 4.61
128 129 2.432628 GCTCGACTTCCACACCCG 60.433 66.667 0.00 0.00 0.00 5.28
129 130 2.432628 CTCGACTTCCACACCCGC 60.433 66.667 0.00 0.00 0.00 6.13
130 131 3.934391 CTCGACTTCCACACCCGCC 62.934 68.421 0.00 0.00 0.00 6.13
149 150 3.204827 GCCGCCGCAATCAGTCAT 61.205 61.111 0.00 0.00 34.03 3.06
150 151 2.711311 CCGCCGCAATCAGTCATG 59.289 61.111 0.00 0.00 0.00 3.07
151 152 2.023741 CGCCGCAATCAGTCATGC 59.976 61.111 0.00 0.00 39.17 4.06
157 158 2.169663 GCAATCAGTCATGCGTTGAG 57.830 50.000 0.00 0.00 34.17 3.02
158 159 1.466167 GCAATCAGTCATGCGTTGAGT 59.534 47.619 0.00 0.00 38.61 3.41
159 160 2.475187 GCAATCAGTCATGCGTTGAGTC 60.475 50.000 0.00 0.00 35.76 3.36
160 161 2.998670 CAATCAGTCATGCGTTGAGTCT 59.001 45.455 0.00 0.00 35.76 3.24
161 162 4.176271 CAATCAGTCATGCGTTGAGTCTA 58.824 43.478 0.00 0.00 35.76 2.59
162 163 3.494045 TCAGTCATGCGTTGAGTCTAG 57.506 47.619 0.00 0.00 35.76 2.43
163 164 1.923204 CAGTCATGCGTTGAGTCTAGC 59.077 52.381 0.00 0.00 35.76 3.42
164 165 1.821753 AGTCATGCGTTGAGTCTAGCT 59.178 47.619 0.00 0.00 32.22 3.32
165 166 1.923204 GTCATGCGTTGAGTCTAGCTG 59.077 52.381 0.00 0.00 34.17 4.24
166 167 1.546029 TCATGCGTTGAGTCTAGCTGT 59.454 47.619 0.00 0.00 0.00 4.40
167 168 2.029020 TCATGCGTTGAGTCTAGCTGTT 60.029 45.455 0.00 0.00 0.00 3.16
168 169 2.065993 TGCGTTGAGTCTAGCTGTTC 57.934 50.000 0.00 0.00 0.00 3.18
169 170 1.336887 TGCGTTGAGTCTAGCTGTTCC 60.337 52.381 0.00 0.00 0.00 3.62
170 171 1.997669 CGTTGAGTCTAGCTGTTCCC 58.002 55.000 0.00 0.00 0.00 3.97
171 172 1.404315 CGTTGAGTCTAGCTGTTCCCC 60.404 57.143 0.00 0.00 0.00 4.81
172 173 1.903183 GTTGAGTCTAGCTGTTCCCCT 59.097 52.381 0.00 0.00 0.00 4.79
173 174 1.561643 TGAGTCTAGCTGTTCCCCTG 58.438 55.000 0.00 0.00 0.00 4.45
174 175 0.176910 GAGTCTAGCTGTTCCCCTGC 59.823 60.000 0.00 0.00 38.23 4.85
175 176 0.545309 AGTCTAGCTGTTCCCCTGCA 60.545 55.000 0.00 0.00 40.25 4.41
176 177 0.391793 GTCTAGCTGTTCCCCTGCAC 60.392 60.000 0.00 0.00 40.25 4.57
177 178 0.545309 TCTAGCTGTTCCCCTGCACT 60.545 55.000 0.00 0.00 40.25 4.40
178 179 0.392193 CTAGCTGTTCCCCTGCACTG 60.392 60.000 0.00 0.00 40.25 3.66
179 180 1.841302 TAGCTGTTCCCCTGCACTGG 61.841 60.000 0.00 0.00 40.25 4.00
180 181 2.674380 CTGTTCCCCTGCACTGGC 60.674 66.667 0.00 0.00 41.68 4.85
202 203 3.522553 AGCATTACTGAGTTAAGTCGGC 58.477 45.455 17.49 8.38 0.00 5.54
203 204 3.056107 AGCATTACTGAGTTAAGTCGGCA 60.056 43.478 17.49 3.57 0.00 5.69
204 205 3.682858 GCATTACTGAGTTAAGTCGGCAA 59.317 43.478 17.49 12.27 0.00 4.52
205 206 4.153475 GCATTACTGAGTTAAGTCGGCAAA 59.847 41.667 17.49 12.79 0.00 3.68
206 207 5.334569 GCATTACTGAGTTAAGTCGGCAAAA 60.335 40.000 17.49 10.67 0.00 2.44
207 208 5.917541 TTACTGAGTTAAGTCGGCAAAAG 57.082 39.130 17.49 5.47 0.00 2.27
208 209 2.548480 ACTGAGTTAAGTCGGCAAAAGC 59.452 45.455 17.49 0.00 0.00 3.51
209 210 2.808543 CTGAGTTAAGTCGGCAAAAGCT 59.191 45.455 6.19 0.00 0.00 3.74
210 211 3.994392 CTGAGTTAAGTCGGCAAAAGCTA 59.006 43.478 6.19 0.00 0.00 3.32
211 212 4.382291 TGAGTTAAGTCGGCAAAAGCTAA 58.618 39.130 5.84 0.00 0.00 3.09
212 213 4.212636 TGAGTTAAGTCGGCAAAAGCTAAC 59.787 41.667 5.84 0.00 0.00 2.34
213 214 4.131596 AGTTAAGTCGGCAAAAGCTAACA 58.868 39.130 0.00 0.00 0.00 2.41
214 215 4.024302 AGTTAAGTCGGCAAAAGCTAACAC 60.024 41.667 0.00 0.00 0.00 3.32
215 216 1.235724 AGTCGGCAAAAGCTAACACC 58.764 50.000 0.00 0.00 0.00 4.16
216 217 0.240145 GTCGGCAAAAGCTAACACCC 59.760 55.000 0.00 0.00 0.00 4.61
217 218 0.891904 TCGGCAAAAGCTAACACCCC 60.892 55.000 0.00 0.00 0.00 4.95
218 219 1.175983 CGGCAAAAGCTAACACCCCA 61.176 55.000 0.00 0.00 0.00 4.96
219 220 1.044611 GGCAAAAGCTAACACCCCAA 58.955 50.000 0.00 0.00 0.00 4.12
220 221 1.000843 GGCAAAAGCTAACACCCCAAG 59.999 52.381 0.00 0.00 0.00 3.61
221 222 1.960689 GCAAAAGCTAACACCCCAAGA 59.039 47.619 0.00 0.00 0.00 3.02
222 223 2.562738 GCAAAAGCTAACACCCCAAGAT 59.437 45.455 0.00 0.00 0.00 2.40
223 224 3.367395 GCAAAAGCTAACACCCCAAGATC 60.367 47.826 0.00 0.00 0.00 2.75
224 225 3.806949 AAAGCTAACACCCCAAGATCA 57.193 42.857 0.00 0.00 0.00 2.92
225 226 4.322057 AAAGCTAACACCCCAAGATCAT 57.678 40.909 0.00 0.00 0.00 2.45
226 227 3.287867 AGCTAACACCCCAAGATCATG 57.712 47.619 0.00 0.00 0.00 3.07
227 228 1.678101 GCTAACACCCCAAGATCATGC 59.322 52.381 0.00 0.00 0.00 4.06
228 229 2.301346 CTAACACCCCAAGATCATGCC 58.699 52.381 0.00 0.00 0.00 4.40
229 230 0.409092 AACACCCCAAGATCATGCCA 59.591 50.000 0.00 0.00 0.00 4.92
230 231 0.409092 ACACCCCAAGATCATGCCAA 59.591 50.000 0.00 0.00 0.00 4.52
231 232 1.007479 ACACCCCAAGATCATGCCAAT 59.993 47.619 0.00 0.00 0.00 3.16
232 233 1.684983 CACCCCAAGATCATGCCAATC 59.315 52.381 0.00 0.00 0.00 2.67
233 234 1.572415 ACCCCAAGATCATGCCAATCT 59.428 47.619 0.00 0.00 34.96 2.40
234 235 2.236766 CCCCAAGATCATGCCAATCTC 58.763 52.381 0.00 0.00 32.29 2.75
235 236 2.423803 CCCCAAGATCATGCCAATCTCA 60.424 50.000 0.00 0.00 32.29 3.27
236 237 3.293337 CCCAAGATCATGCCAATCTCAA 58.707 45.455 0.00 0.00 32.29 3.02
237 238 3.318275 CCCAAGATCATGCCAATCTCAAG 59.682 47.826 0.00 0.00 32.29 3.02
238 239 3.243434 CCAAGATCATGCCAATCTCAAGC 60.243 47.826 0.00 0.00 32.29 4.01
239 240 3.579534 AGATCATGCCAATCTCAAGCT 57.420 42.857 0.00 0.00 0.00 3.74
240 241 4.701651 AGATCATGCCAATCTCAAGCTA 57.298 40.909 0.00 0.00 0.00 3.32
241 242 4.387598 AGATCATGCCAATCTCAAGCTAC 58.612 43.478 0.00 0.00 0.00 3.58
242 243 3.632643 TCATGCCAATCTCAAGCTACA 57.367 42.857 0.00 0.00 0.00 2.74
243 244 3.538591 TCATGCCAATCTCAAGCTACAG 58.461 45.455 0.00 0.00 0.00 2.74
244 245 3.054875 TCATGCCAATCTCAAGCTACAGT 60.055 43.478 0.00 0.00 0.00 3.55
245 246 4.162131 TCATGCCAATCTCAAGCTACAGTA 59.838 41.667 0.00 0.00 0.00 2.74
246 247 4.128925 TGCCAATCTCAAGCTACAGTAG 57.871 45.455 2.85 2.85 0.00 2.57
247 248 3.118629 TGCCAATCTCAAGCTACAGTAGG 60.119 47.826 9.74 0.00 0.00 3.18
248 249 3.118592 GCCAATCTCAAGCTACAGTAGGT 60.119 47.826 6.46 6.46 38.32 3.08
249 250 4.437239 CCAATCTCAAGCTACAGTAGGTG 58.563 47.826 13.11 7.75 36.50 4.00
250 251 3.810310 ATCTCAAGCTACAGTAGGTGC 57.190 47.619 13.11 0.00 36.50 5.01
251 252 2.525368 TCTCAAGCTACAGTAGGTGCA 58.475 47.619 13.11 2.35 36.50 4.57
252 253 3.099905 TCTCAAGCTACAGTAGGTGCAT 58.900 45.455 13.11 0.00 36.50 3.96
253 254 3.118992 TCTCAAGCTACAGTAGGTGCATG 60.119 47.826 13.11 8.14 36.50 4.06
254 255 1.667724 CAAGCTACAGTAGGTGCATGC 59.332 52.381 11.82 11.82 36.50 4.06
255 256 0.179100 AGCTACAGTAGGTGCATGCG 60.179 55.000 14.09 0.00 34.78 4.73
256 257 0.460284 GCTACAGTAGGTGCATGCGT 60.460 55.000 14.09 5.27 0.00 5.24
257 258 1.560923 CTACAGTAGGTGCATGCGTC 58.439 55.000 14.09 8.67 0.00 5.19
258 259 0.174845 TACAGTAGGTGCATGCGTCC 59.825 55.000 19.77 19.77 0.00 4.79
259 260 1.079197 CAGTAGGTGCATGCGTCCA 60.079 57.895 26.07 13.89 0.00 4.02
260 261 1.086067 CAGTAGGTGCATGCGTCCAG 61.086 60.000 26.07 13.49 0.00 3.86
261 262 1.079127 GTAGGTGCATGCGTCCAGT 60.079 57.895 26.07 13.81 0.00 4.00
262 263 0.673644 GTAGGTGCATGCGTCCAGTT 60.674 55.000 26.07 13.25 0.00 3.16
263 264 0.391130 TAGGTGCATGCGTCCAGTTC 60.391 55.000 26.07 6.44 0.00 3.01
264 265 2.690778 GGTGCATGCGTCCAGTTCC 61.691 63.158 21.63 7.69 0.00 3.62
265 266 2.741985 TGCATGCGTCCAGTTCCG 60.742 61.111 14.09 0.00 0.00 4.30
266 267 3.499737 GCATGCGTCCAGTTCCGG 61.500 66.667 0.00 0.00 0.00 5.14
267 268 2.047274 CATGCGTCCAGTTCCGGT 60.047 61.111 0.00 0.00 0.00 5.28
268 269 2.047274 ATGCGTCCAGTTCCGGTG 60.047 61.111 0.00 0.00 0.00 4.94
269 270 2.879233 ATGCGTCCAGTTCCGGTGT 61.879 57.895 0.00 0.00 0.00 4.16
270 271 3.041940 GCGTCCAGTTCCGGTGTG 61.042 66.667 0.00 0.00 0.00 3.82
271 272 2.420043 CGTCCAGTTCCGGTGTGT 59.580 61.111 0.00 0.00 0.00 3.72
272 273 1.661480 CGTCCAGTTCCGGTGTGTA 59.339 57.895 0.00 0.00 0.00 2.90
273 274 0.032403 CGTCCAGTTCCGGTGTGTAA 59.968 55.000 0.00 0.00 0.00 2.41
274 275 1.337447 CGTCCAGTTCCGGTGTGTAAT 60.337 52.381 0.00 0.00 0.00 1.89
275 276 2.073816 GTCCAGTTCCGGTGTGTAATG 58.926 52.381 0.00 0.00 0.00 1.90
276 277 0.802494 CCAGTTCCGGTGTGTAATGC 59.198 55.000 0.00 0.00 0.00 3.56
277 278 1.610624 CCAGTTCCGGTGTGTAATGCT 60.611 52.381 0.00 0.00 0.00 3.79
278 279 2.151202 CAGTTCCGGTGTGTAATGCTT 58.849 47.619 0.00 0.00 0.00 3.91
279 280 2.159627 CAGTTCCGGTGTGTAATGCTTC 59.840 50.000 0.00 0.00 0.00 3.86
280 281 2.147958 GTTCCGGTGTGTAATGCTTCA 58.852 47.619 0.00 0.00 0.00 3.02
281 282 2.550606 GTTCCGGTGTGTAATGCTTCAA 59.449 45.455 0.00 0.00 0.00 2.69
282 283 2.422597 TCCGGTGTGTAATGCTTCAAG 58.577 47.619 0.00 0.00 0.00 3.02
283 284 1.135689 CCGGTGTGTAATGCTTCAAGC 60.136 52.381 1.04 1.04 42.82 4.01
284 285 1.806542 CGGTGTGTAATGCTTCAAGCT 59.193 47.619 11.57 0.00 42.97 3.74
285 286 3.000041 CGGTGTGTAATGCTTCAAGCTA 59.000 45.455 11.57 0.00 42.97 3.32
286 287 3.062639 CGGTGTGTAATGCTTCAAGCTAG 59.937 47.826 11.57 0.00 42.97 3.42
287 288 3.181506 GGTGTGTAATGCTTCAAGCTAGC 60.182 47.826 11.57 6.62 42.97 3.42
288 289 2.672874 TGTGTAATGCTTCAAGCTAGCG 59.327 45.455 11.57 0.00 42.97 4.26
289 290 2.930040 GTGTAATGCTTCAAGCTAGCGA 59.070 45.455 11.57 0.00 42.97 4.93
290 291 3.370978 GTGTAATGCTTCAAGCTAGCGAA 59.629 43.478 11.57 6.97 42.97 4.70
291 292 4.000325 TGTAATGCTTCAAGCTAGCGAAA 59.000 39.130 11.57 4.26 42.97 3.46
292 293 3.754188 AATGCTTCAAGCTAGCGAAAG 57.246 42.857 11.57 14.50 42.97 2.62
293 294 2.169832 TGCTTCAAGCTAGCGAAAGT 57.830 45.000 11.57 0.00 42.97 2.66
294 295 2.069273 TGCTTCAAGCTAGCGAAAGTC 58.931 47.619 11.57 15.39 42.97 3.01
295 296 1.059835 GCTTCAAGCTAGCGAAAGTCG 59.940 52.381 20.50 6.75 39.67 4.18
296 297 2.329379 CTTCAAGCTAGCGAAAGTCGT 58.671 47.619 9.55 0.00 42.81 4.34
297 298 3.499048 CTTCAAGCTAGCGAAAGTCGTA 58.501 45.455 9.55 0.00 42.81 3.43
298 299 2.860062 TCAAGCTAGCGAAAGTCGTAC 58.140 47.619 9.55 0.00 42.81 3.67
299 300 1.578023 CAAGCTAGCGAAAGTCGTACG 59.422 52.381 9.53 9.53 42.81 3.67
300 301 0.801251 AGCTAGCGAAAGTCGTACGT 59.199 50.000 16.05 0.00 42.81 3.57
301 302 1.198637 AGCTAGCGAAAGTCGTACGTT 59.801 47.619 16.05 1.72 42.81 3.99
302 303 1.316735 GCTAGCGAAAGTCGTACGTTG 59.683 52.381 16.05 0.55 42.81 4.10
303 304 2.578495 CTAGCGAAAGTCGTACGTTGT 58.422 47.619 16.05 0.00 42.81 3.32
304 305 1.126079 AGCGAAAGTCGTACGTTGTG 58.874 50.000 16.05 3.13 42.81 3.33
305 306 0.160182 GCGAAAGTCGTACGTTGTGG 59.840 55.000 16.05 3.02 42.81 4.17
306 307 0.160182 CGAAAGTCGTACGTTGTGGC 59.840 55.000 16.05 1.29 34.72 5.01
307 308 0.509929 GAAAGTCGTACGTTGTGGCC 59.490 55.000 16.05 0.00 0.00 5.36
308 309 1.216941 AAAGTCGTACGTTGTGGCCG 61.217 55.000 16.05 0.00 0.00 6.13
309 310 2.050168 GTCGTACGTTGTGGCCGA 60.050 61.111 16.05 0.00 0.00 5.54
310 311 1.661197 GTCGTACGTTGTGGCCGAA 60.661 57.895 16.05 0.00 0.00 4.30
311 312 1.661197 TCGTACGTTGTGGCCGAAC 60.661 57.895 16.05 2.43 0.00 3.95
312 313 1.662446 CGTACGTTGTGGCCGAACT 60.662 57.895 7.22 5.63 0.00 3.01
313 314 1.857364 GTACGTTGTGGCCGAACTG 59.143 57.895 13.89 10.32 0.00 3.16
314 315 0.877213 GTACGTTGTGGCCGAACTGT 60.877 55.000 13.89 14.29 0.00 3.55
315 316 0.672889 TACGTTGTGGCCGAACTGTA 59.327 50.000 13.89 13.54 0.00 2.74
316 317 0.599204 ACGTTGTGGCCGAACTGTAG 60.599 55.000 13.89 3.17 0.00 2.74
317 318 0.599204 CGTTGTGGCCGAACTGTAGT 60.599 55.000 13.89 0.00 0.00 2.73
318 319 0.865769 GTTGTGGCCGAACTGTAGTG 59.134 55.000 9.67 0.00 0.00 2.74
319 320 0.753867 TTGTGGCCGAACTGTAGTGA 59.246 50.000 0.00 0.00 0.00 3.41
320 321 0.973632 TGTGGCCGAACTGTAGTGAT 59.026 50.000 0.00 0.00 0.00 3.06
321 322 1.346395 TGTGGCCGAACTGTAGTGATT 59.654 47.619 0.00 0.00 0.00 2.57
322 323 2.224426 TGTGGCCGAACTGTAGTGATTT 60.224 45.455 0.00 0.00 0.00 2.17
323 324 2.812011 GTGGCCGAACTGTAGTGATTTT 59.188 45.455 0.00 0.00 0.00 1.82
324 325 3.252458 GTGGCCGAACTGTAGTGATTTTT 59.748 43.478 0.00 0.00 0.00 1.94
325 326 3.500680 TGGCCGAACTGTAGTGATTTTTC 59.499 43.478 0.00 0.00 0.00 2.29
326 327 3.751698 GGCCGAACTGTAGTGATTTTTCT 59.248 43.478 0.00 0.00 0.00 2.52
327 328 4.142881 GGCCGAACTGTAGTGATTTTTCTC 60.143 45.833 0.00 0.00 0.00 2.87
328 329 4.691216 GCCGAACTGTAGTGATTTTTCTCT 59.309 41.667 0.00 0.00 0.00 3.10
329 330 5.867716 GCCGAACTGTAGTGATTTTTCTCTA 59.132 40.000 0.00 0.00 0.00 2.43
330 331 6.535508 GCCGAACTGTAGTGATTTTTCTCTAT 59.464 38.462 0.00 0.00 0.00 1.98
331 332 7.705325 GCCGAACTGTAGTGATTTTTCTCTATA 59.295 37.037 0.00 0.00 0.00 1.31
332 333 9.021863 CCGAACTGTAGTGATTTTTCTCTATAC 57.978 37.037 0.00 0.00 0.00 1.47
333 334 9.790389 CGAACTGTAGTGATTTTTCTCTATACT 57.210 33.333 0.00 0.00 0.00 2.12
361 362 9.817809 ATCAAACGACACTAAATGTACTATCAT 57.182 29.630 0.00 0.00 43.56 2.45
362 363 9.297586 TCAAACGACACTAAATGTACTATCATC 57.702 33.333 0.00 0.00 43.56 2.92
363 364 8.540492 CAAACGACACTAAATGTACTATCATCC 58.460 37.037 0.00 0.00 43.56 3.51
364 365 7.584122 ACGACACTAAATGTACTATCATCCT 57.416 36.000 0.00 0.00 43.56 3.24
365 366 7.649973 ACGACACTAAATGTACTATCATCCTC 58.350 38.462 0.00 0.00 43.56 3.71
366 367 7.502895 ACGACACTAAATGTACTATCATCCTCT 59.497 37.037 0.00 0.00 43.56 3.69
367 368 8.353684 CGACACTAAATGTACTATCATCCTCTT 58.646 37.037 0.00 0.00 43.56 2.85
376 377 8.783660 TGTACTATCATCCTCTTTCATTACCT 57.216 34.615 0.00 0.00 0.00 3.08
377 378 9.877222 TGTACTATCATCCTCTTTCATTACCTA 57.123 33.333 0.00 0.00 0.00 3.08
380 381 9.607333 ACTATCATCCTCTTTCATTACCTATGA 57.393 33.333 0.00 0.00 41.50 2.15
390 391 6.367374 TTCATTACCTATGAACACAGACCA 57.633 37.500 0.00 0.00 45.91 4.02
391 392 6.560003 TCATTACCTATGAACACAGACCAT 57.440 37.500 0.00 0.00 40.29 3.55
392 393 6.348498 TCATTACCTATGAACACAGACCATG 58.652 40.000 0.00 0.00 40.29 3.66
393 394 5.755409 TTACCTATGAACACAGACCATGT 57.245 39.130 0.00 0.00 45.43 3.21
394 395 4.640771 ACCTATGAACACAGACCATGTT 57.359 40.909 0.00 0.00 41.41 2.71
395 396 4.985538 ACCTATGAACACAGACCATGTTT 58.014 39.130 0.00 0.00 41.41 2.83
396 397 5.385198 ACCTATGAACACAGACCATGTTTT 58.615 37.500 0.00 0.00 41.41 2.43
397 398 5.833131 ACCTATGAACACAGACCATGTTTTT 59.167 36.000 0.00 0.00 41.41 1.94
398 399 7.001674 ACCTATGAACACAGACCATGTTTTTA 58.998 34.615 0.00 0.00 41.41 1.52
399 400 7.174946 ACCTATGAACACAGACCATGTTTTTAG 59.825 37.037 0.00 0.00 41.41 1.85
400 401 7.390440 CCTATGAACACAGACCATGTTTTTAGA 59.610 37.037 0.00 0.00 41.41 2.10
401 402 7.581213 ATGAACACAGACCATGTTTTTAGAA 57.419 32.000 0.00 0.00 41.41 2.10
402 403 7.026631 TGAACACAGACCATGTTTTTAGAAG 57.973 36.000 0.00 0.00 41.41 2.85
403 404 6.826231 TGAACACAGACCATGTTTTTAGAAGA 59.174 34.615 0.00 0.00 41.41 2.87
404 405 7.338196 TGAACACAGACCATGTTTTTAGAAGAA 59.662 33.333 0.00 0.00 41.41 2.52
405 406 7.264373 ACACAGACCATGTTTTTAGAAGAAG 57.736 36.000 0.00 0.00 41.41 2.85
406 407 7.054124 ACACAGACCATGTTTTTAGAAGAAGA 58.946 34.615 0.00 0.00 41.41 2.87
427 428 8.571336 AGAAGAAAAATAACTCTGAACACATGG 58.429 33.333 0.00 0.00 0.00 3.66
428 429 6.681777 AGAAAAATAACTCTGAACACATGGC 58.318 36.000 0.00 0.00 0.00 4.40
429 430 5.391312 AAAATAACTCTGAACACATGGCC 57.609 39.130 0.00 0.00 0.00 5.36
431 432 0.606401 AACTCTGAACACATGGCCCG 60.606 55.000 0.00 0.00 0.00 6.13
434 435 1.191489 TCTGAACACATGGCCCGAGA 61.191 55.000 0.00 0.00 0.00 4.04
435 436 0.107508 CTGAACACATGGCCCGAGAT 60.108 55.000 0.00 0.00 0.00 2.75
452 454 5.163854 CCCGAGATAAAACACTTGTTAGCAG 60.164 44.000 0.00 0.00 37.25 4.24
453 455 5.163854 CCGAGATAAAACACTTGTTAGCAGG 60.164 44.000 0.00 0.00 37.25 4.85
458 460 1.318576 ACACTTGTTAGCAGGTTGGC 58.681 50.000 0.00 0.00 32.27 4.52
459 461 1.317613 CACTTGTTAGCAGGTTGGCA 58.682 50.000 0.00 0.00 32.27 4.92
497 499 8.292448 GTGAAATCATTCATATAATTCGGCAGT 58.708 33.333 0.00 0.00 46.67 4.40
506 508 8.310406 TCATATAATTCGGCAGTGAAACATAG 57.690 34.615 0.00 0.00 41.43 2.23
517 519 5.466728 GCAGTGAAACATAGAACACTTGAGA 59.533 40.000 0.00 0.00 40.84 3.27
518 520 6.347240 GCAGTGAAACATAGAACACTTGAGAG 60.347 42.308 0.00 0.00 40.84 3.20
527 529 3.706594 AGAACACTTGAGAGTTCAGTGGA 59.293 43.478 18.85 0.00 44.43 4.02
533 535 3.949842 TGAGAGTTCAGTGGATGTCTG 57.050 47.619 0.00 0.00 0.00 3.51
578 580 6.766944 ACAATTCAATCTTCAAAATGTTGGCA 59.233 30.769 0.00 0.00 35.29 4.92
598 600 4.676546 GCATGAGCCATCTTACTTTTTCC 58.323 43.478 0.00 0.00 33.58 3.13
608 610 7.545615 GCCATCTTACTTTTTCCTTGTAAATGG 59.454 37.037 3.58 3.58 37.56 3.16
615 617 7.984391 ACTTTTTCCTTGTAAATGGCAAAAAG 58.016 30.769 19.85 19.85 40.73 2.27
639 659 5.739752 TGAATCACTTTCTATCATTGCGG 57.260 39.130 0.00 0.00 35.23 5.69
640 660 5.427378 TGAATCACTTTCTATCATTGCGGA 58.573 37.500 0.00 0.00 35.23 5.54
644 664 4.870426 TCACTTTCTATCATTGCGGAGAAC 59.130 41.667 0.00 0.00 0.00 3.01
646 666 6.042777 CACTTTCTATCATTGCGGAGAACTA 58.957 40.000 0.00 0.00 0.00 2.24
653 673 5.654603 TCATTGCGGAGAACTAGTCTTTA 57.345 39.130 0.00 0.00 36.41 1.85
664 702 1.389106 CTAGTCTTTACGGCGTTGCAC 59.611 52.381 21.24 10.38 0.00 4.57
674 712 1.668419 GGCGTTGCACTATGGAGATT 58.332 50.000 0.00 0.00 0.00 2.40
676 714 2.032178 GGCGTTGCACTATGGAGATTTC 59.968 50.000 0.00 0.00 0.00 2.17
677 715 2.285834 GCGTTGCACTATGGAGATTTCG 60.286 50.000 0.00 0.00 0.00 3.46
678 716 2.285834 CGTTGCACTATGGAGATTTCGC 60.286 50.000 0.00 0.00 0.00 4.70
679 717 2.677836 GTTGCACTATGGAGATTTCGCA 59.322 45.455 0.00 0.00 0.00 5.10
680 718 3.198409 TGCACTATGGAGATTTCGCAT 57.802 42.857 0.00 0.00 0.00 4.73
681 719 2.874086 TGCACTATGGAGATTTCGCATG 59.126 45.455 0.00 0.00 0.00 4.06
682 720 3.133691 GCACTATGGAGATTTCGCATGA 58.866 45.455 0.00 0.00 0.00 3.07
683 721 3.561310 GCACTATGGAGATTTCGCATGAA 59.439 43.478 0.00 0.00 0.00 2.57
684 722 4.214971 GCACTATGGAGATTTCGCATGAAT 59.785 41.667 0.00 0.00 33.20 2.57
685 723 5.409520 GCACTATGGAGATTTCGCATGAATA 59.590 40.000 0.00 0.00 33.20 1.75
686 724 6.093219 GCACTATGGAGATTTCGCATGAATAT 59.907 38.462 0.00 0.00 33.20 1.28
689 727 8.725148 ACTATGGAGATTTCGCATGAATATTTC 58.275 33.333 0.00 0.00 33.20 2.17
690 728 6.940831 TGGAGATTTCGCATGAATATTTCA 57.059 33.333 0.00 0.00 45.01 2.69
691 729 7.332213 TGGAGATTTCGCATGAATATTTCAA 57.668 32.000 0.00 0.00 43.95 2.69
692 730 7.195646 TGGAGATTTCGCATGAATATTTCAAC 58.804 34.615 0.00 0.00 43.95 3.18
693 731 7.148103 TGGAGATTTCGCATGAATATTTCAACA 60.148 33.333 0.00 0.00 43.95 3.33
731 769 8.722342 TTTGCTTCGTTGTATATCTTTTTGTC 57.278 30.769 0.00 0.00 0.00 3.18
734 772 6.677187 GCTTCGTTGTATATCTTTTTGTCCCC 60.677 42.308 0.00 0.00 0.00 4.81
739 777 7.201582 CGTTGTATATCTTTTTGTCCCCACTAC 60.202 40.741 0.00 0.00 0.00 2.73
756 794 5.239306 CCCACTACGGTAGTCATTATCGTTA 59.761 44.000 17.59 0.00 46.57 3.18
762 800 6.038356 ACGGTAGTCATTATCGTTAAACAGG 58.962 40.000 0.00 0.00 46.57 4.00
764 802 6.417044 CGGTAGTCATTATCGTTAAACAGGAG 59.583 42.308 0.00 0.00 31.17 3.69
775 813 1.308998 AAACAGGAGGTTCAAGTGCG 58.691 50.000 0.00 0.00 39.29 5.34
819 4829 3.047796 CACGTTAGTGCTTCTACACGTT 58.952 45.455 17.09 0.00 45.45 3.99
834 4845 0.393808 ACGTTGGAGCACTTGGTGTT 60.394 50.000 0.00 0.00 35.75 3.32
839 4855 0.668535 GGAGCACTTGGTGTTGTTCC 59.331 55.000 0.00 0.00 35.75 3.62
863 4879 3.309682 GCTTGATGCAGAATACACGCTTA 59.690 43.478 0.00 0.00 42.31 3.09
871 4887 5.022021 GCAGAATACACGCTTAATGAACAC 58.978 41.667 0.00 0.00 0.00 3.32
874 4891 5.351465 AGAATACACGCTTAATGAACACAGG 59.649 40.000 0.00 0.00 0.00 4.00
878 4895 2.224670 ACGCTTAATGAACACAGGGGAA 60.225 45.455 0.00 0.00 0.00 3.97
879 4896 2.817258 CGCTTAATGAACACAGGGGAAA 59.183 45.455 0.00 0.00 0.00 3.13
880 4897 3.254657 CGCTTAATGAACACAGGGGAAAA 59.745 43.478 0.00 0.00 0.00 2.29
899 4916 6.249192 GGAAAATGCCCCTATAAATAGAGCT 58.751 40.000 11.06 0.00 33.42 4.09
904 4921 4.097418 GCCCCTATAAATAGAGCTCCAGA 58.903 47.826 10.93 0.00 32.05 3.86
905 4923 4.081365 GCCCCTATAAATAGAGCTCCAGAC 60.081 50.000 10.93 0.00 32.05 3.51
910 4928 7.256835 CCCTATAAATAGAGCTCCAGACCAAAT 60.257 40.741 10.93 0.00 32.05 2.32
928 4946 5.195940 CCAAATATTCATCTCACACACCCT 58.804 41.667 0.00 0.00 0.00 4.34
954 4975 4.067192 GGTAAACCTGCTAAGACCGAAAA 58.933 43.478 0.00 0.00 0.00 2.29
971 4992 4.157656 CCGAAAACTCCAATAGCAATCCAA 59.842 41.667 0.00 0.00 0.00 3.53
980 5001 7.836183 ACTCCAATAGCAATCCAATAGAAAACT 59.164 33.333 0.00 0.00 0.00 2.66
999 5021 7.611467 AGAAAACTAAATACATCACCAGCATCA 59.389 33.333 0.00 0.00 0.00 3.07
1005 5027 0.387929 CATCACCAGCATCAATGGCC 59.612 55.000 0.00 0.00 41.87 5.36
1069 5091 1.455032 TCCCTCGCCGCAATAGAGA 60.455 57.895 0.00 0.00 34.13 3.10
1116 5138 6.088824 GTCGAATGATGAATTCAAGCTTTGT 58.911 36.000 13.09 0.00 44.34 2.83
1148 5170 1.818674 GGCAGTGAATAACCCAACAGG 59.181 52.381 0.00 0.00 43.78 4.00
1206 13894 2.094675 GCAAACCTATGGTGCATCTGT 58.905 47.619 0.00 0.00 35.34 3.41
1260 13948 1.282817 TGTACCATATTGACGCACGC 58.717 50.000 0.00 0.00 0.00 5.34
1312 14000 1.250154 TACCATGCCAAGCAACTGCC 61.250 55.000 0.00 0.00 43.62 4.85
1322 14010 1.471119 AGCAACTGCCCTTGATGATG 58.529 50.000 0.00 0.00 43.38 3.07
1392 14088 9.476202 GTGTACATATGCATCTACACTTTATGA 57.524 33.333 22.92 0.00 37.21 2.15
1415 14111 6.439375 TGACTAAATAAGTGGAGGAGCACTTA 59.561 38.462 0.00 0.00 44.69 2.24
1470 14170 5.984627 TGTGATTTGAATGTGTACTTGTCG 58.015 37.500 0.00 0.00 0.00 4.35
1473 14173 3.870723 TTGAATGTGTACTTGTCGCAC 57.129 42.857 0.00 0.00 0.00 5.34
1518 14231 6.030228 GCATGTAAGAGGATGTTAAAAGTGC 58.970 40.000 0.00 0.00 0.00 4.40
1520 14233 5.626142 TGTAAGAGGATGTTAAAAGTGCCA 58.374 37.500 0.00 0.00 0.00 4.92
1524 14237 6.949352 AGAGGATGTTAAAAGTGCCATATG 57.051 37.500 0.00 0.00 0.00 1.78
1525 14238 5.300286 AGAGGATGTTAAAAGTGCCATATGC 59.700 40.000 0.00 0.00 41.77 3.14
1552 14265 4.334481 GTCCCATAAACTGGTAACCGAATG 59.666 45.833 0.00 0.00 44.30 2.67
1554 14267 4.095782 CCCATAAACTGGTAACCGAATGTG 59.904 45.833 0.00 0.00 44.30 3.21
1555 14268 4.095782 CCATAAACTGGTAACCGAATGTGG 59.904 45.833 0.00 0.00 40.49 4.17
1588 14301 5.995897 ACTGGTAACCTTGTATGTGTCTTTC 59.004 40.000 0.00 0.00 0.00 2.62
1620 14333 6.902224 AAAACTTGTATGTGTCAAAAAGGC 57.098 33.333 0.00 0.00 0.00 4.35
1649 14362 7.855904 GTGTTTCCTAGTGAACAAGTAAATGTG 59.144 37.037 9.06 0.00 32.81 3.21
1652 14365 6.058833 TCCTAGTGAACAAGTAAATGTGCAA 58.941 36.000 0.00 0.00 40.52 4.08
1691 14409 8.978874 TGGTCAGTGCTATGTAATTTGAATAT 57.021 30.769 0.00 0.00 0.00 1.28
1732 14450 2.814913 AAACCCGATGTCCGAAGCCC 62.815 60.000 0.00 0.00 41.76 5.19
1840 14559 8.780846 AATTTAATTCGGGAAATTTGGGTTAC 57.219 30.769 0.00 0.00 38.53 2.50
1865 14584 2.550487 TGGTACACGAATTGCCTGC 58.450 52.632 0.00 0.00 0.00 4.85
1929 14649 4.021102 AGAGATGACCCAACACGAAATT 57.979 40.909 0.00 0.00 0.00 1.82
1934 14654 3.226777 TGACCCAACACGAAATTCCATT 58.773 40.909 0.00 0.00 0.00 3.16
1948 14668 2.203394 CATTGCTAGCCCCCGCAT 60.203 61.111 13.29 0.00 35.85 4.73
2005 14725 1.603739 GTCCCCTTCCAAGCACCAC 60.604 63.158 0.00 0.00 0.00 4.16
2032 14752 3.379445 CCTACCCGCCGTCACAGT 61.379 66.667 0.00 0.00 0.00 3.55
2040 14760 3.991051 CCGTCACAGTCCCACGCT 61.991 66.667 0.00 0.00 32.03 5.07
2064 14784 1.303888 CCCACAGGCATTGCACTCT 60.304 57.895 11.39 0.00 0.00 3.24
2070 14790 2.327343 GGCATTGCACTCTGTCGCA 61.327 57.895 11.39 0.00 36.05 5.10
2072 14792 1.792301 CATTGCACTCTGTCGCAGG 59.208 57.895 6.95 1.86 39.75 4.85
2076 14796 3.051210 CACTCTGTCGCAGGTCCA 58.949 61.111 6.95 0.00 31.51 4.02
2188 14932 5.758924 CAGCATGACATCGATGATTCAAAT 58.241 37.500 31.33 12.33 39.69 2.32
2189 14933 6.567132 GCAGCATGACATCGATGATTCAAATA 60.567 38.462 31.33 4.50 39.69 1.40
2227 14971 1.592669 ATCATTCTCGAAGCCGCGG 60.593 57.895 24.05 24.05 35.37 6.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 9.250624 AGACTATATGAAAAGCGTCTATTGTTC 57.749 33.333 0.00 0.00 30.65 3.18
5 6 7.803659 TCGAGACTATATGAAAAGCGTCTATTG 59.196 37.037 0.00 0.00 32.41 1.90
6 7 7.872881 TCGAGACTATATGAAAAGCGTCTATT 58.127 34.615 0.00 0.00 32.41 1.73
7 8 7.173562 ACTCGAGACTATATGAAAAGCGTCTAT 59.826 37.037 21.68 0.00 32.41 1.98
8 9 6.482641 ACTCGAGACTATATGAAAAGCGTCTA 59.517 38.462 21.68 0.00 32.41 2.59
9 10 5.297278 ACTCGAGACTATATGAAAAGCGTCT 59.703 40.000 21.68 0.00 34.71 4.18
10 11 5.396947 CACTCGAGACTATATGAAAAGCGTC 59.603 44.000 21.68 0.00 0.00 5.19
11 12 5.274718 CACTCGAGACTATATGAAAAGCGT 58.725 41.667 21.68 0.00 0.00 5.07
12 13 4.147306 GCACTCGAGACTATATGAAAAGCG 59.853 45.833 21.68 0.00 0.00 4.68
13 14 4.446051 GGCACTCGAGACTATATGAAAAGC 59.554 45.833 21.68 3.69 0.00 3.51
14 15 4.677378 CGGCACTCGAGACTATATGAAAAG 59.323 45.833 21.68 0.00 42.43 2.27
15 16 4.499188 CCGGCACTCGAGACTATATGAAAA 60.499 45.833 21.68 0.00 42.43 2.29
16 17 3.004419 CCGGCACTCGAGACTATATGAAA 59.996 47.826 21.68 0.00 42.43 2.69
17 18 2.552743 CCGGCACTCGAGACTATATGAA 59.447 50.000 21.68 0.00 42.43 2.57
18 19 2.152016 CCGGCACTCGAGACTATATGA 58.848 52.381 21.68 0.00 42.43 2.15
19 20 1.880675 ACCGGCACTCGAGACTATATG 59.119 52.381 21.68 6.78 42.43 1.78
20 21 2.152830 GACCGGCACTCGAGACTATAT 58.847 52.381 21.68 0.00 42.43 0.86
21 22 1.590932 GACCGGCACTCGAGACTATA 58.409 55.000 21.68 0.00 42.43 1.31
22 23 1.437772 CGACCGGCACTCGAGACTAT 61.438 60.000 21.68 0.00 42.43 2.12
23 24 2.104859 CGACCGGCACTCGAGACTA 61.105 63.158 21.68 0.00 42.43 2.59
24 25 3.432588 CGACCGGCACTCGAGACT 61.433 66.667 21.68 0.00 42.43 3.24
25 26 3.429141 TCGACCGGCACTCGAGAC 61.429 66.667 21.68 10.62 42.43 3.36
26 27 3.429141 GTCGACCGGCACTCGAGA 61.429 66.667 21.68 0.00 40.72 4.04
27 28 4.813526 CGTCGACCGGCACTCGAG 62.814 72.222 15.17 11.84 40.72 4.04
44 45 0.175531 CATGGAAATTTGGCGGGGAC 59.824 55.000 0.00 0.00 0.00 4.46
45 46 1.612395 GCATGGAAATTTGGCGGGGA 61.612 55.000 0.00 0.00 0.00 4.81
46 47 1.153389 GCATGGAAATTTGGCGGGG 60.153 57.895 0.00 0.00 0.00 5.73
47 48 1.153389 GGCATGGAAATTTGGCGGG 60.153 57.895 0.00 0.00 0.00 6.13
48 49 1.153389 GGGCATGGAAATTTGGCGG 60.153 57.895 0.00 0.00 0.00 6.13
49 50 0.460635 CAGGGCATGGAAATTTGGCG 60.461 55.000 0.00 0.00 0.00 5.69
50 51 0.903942 TCAGGGCATGGAAATTTGGC 59.096 50.000 0.00 0.00 0.00 4.52
51 52 2.833338 TCTTCAGGGCATGGAAATTTGG 59.167 45.455 0.00 0.00 0.00 3.28
52 53 4.540359 TTCTTCAGGGCATGGAAATTTG 57.460 40.909 0.00 0.00 0.00 2.32
53 54 4.533311 ACATTCTTCAGGGCATGGAAATTT 59.467 37.500 0.00 0.00 0.00 1.82
54 55 4.098894 ACATTCTTCAGGGCATGGAAATT 58.901 39.130 0.00 0.00 0.00 1.82
55 56 3.716431 ACATTCTTCAGGGCATGGAAAT 58.284 40.909 0.00 0.00 0.00 2.17
56 57 3.173953 ACATTCTTCAGGGCATGGAAA 57.826 42.857 0.00 0.00 0.00 3.13
57 58 2.905415 ACATTCTTCAGGGCATGGAA 57.095 45.000 0.00 0.00 0.00 3.53
58 59 2.905415 AACATTCTTCAGGGCATGGA 57.095 45.000 0.00 0.00 0.00 3.41
59 60 4.209538 TGATAACATTCTTCAGGGCATGG 58.790 43.478 0.00 0.00 0.00 3.66
60 61 5.769367 CATGATAACATTCTTCAGGGCATG 58.231 41.667 0.00 0.00 34.15 4.06
61 62 4.280174 GCATGATAACATTCTTCAGGGCAT 59.720 41.667 0.00 0.00 34.15 4.40
62 63 3.633525 GCATGATAACATTCTTCAGGGCA 59.366 43.478 0.00 0.00 34.15 5.36
63 64 3.887716 AGCATGATAACATTCTTCAGGGC 59.112 43.478 0.00 0.00 34.15 5.19
64 65 6.293845 GCTTAGCATGATAACATTCTTCAGGG 60.294 42.308 0.00 0.00 32.78 4.45
65 66 6.261603 TGCTTAGCATGATAACATTCTTCAGG 59.738 38.462 1.39 0.00 32.78 3.86
66 67 7.255491 TGCTTAGCATGATAACATTCTTCAG 57.745 36.000 1.39 0.00 32.78 3.02
67 68 7.553760 TCTTGCTTAGCATGATAACATTCTTCA 59.446 33.333 17.09 0.00 37.70 3.02
68 69 7.854916 GTCTTGCTTAGCATGATAACATTCTTC 59.145 37.037 22.40 5.46 42.85 2.87
69 70 7.201767 GGTCTTGCTTAGCATGATAACATTCTT 60.202 37.037 22.40 0.00 42.85 2.52
70 71 6.261826 GGTCTTGCTTAGCATGATAACATTCT 59.738 38.462 22.40 0.00 42.85 2.40
71 72 6.433766 GGTCTTGCTTAGCATGATAACATTC 58.566 40.000 22.40 10.06 42.85 2.67
72 73 5.300286 GGGTCTTGCTTAGCATGATAACATT 59.700 40.000 22.40 0.00 42.85 2.71
73 74 4.823989 GGGTCTTGCTTAGCATGATAACAT 59.176 41.667 22.40 0.00 42.85 2.71
74 75 4.199310 GGGTCTTGCTTAGCATGATAACA 58.801 43.478 22.40 1.01 42.85 2.41
75 76 3.248602 CGGGTCTTGCTTAGCATGATAAC 59.751 47.826 22.40 16.04 42.85 1.89
76 77 3.466836 CGGGTCTTGCTTAGCATGATAA 58.533 45.455 22.40 2.99 42.85 1.75
77 78 2.224281 CCGGGTCTTGCTTAGCATGATA 60.224 50.000 22.40 1.24 42.85 2.15
78 79 1.475751 CCGGGTCTTGCTTAGCATGAT 60.476 52.381 22.40 0.00 42.85 2.45
79 80 0.107703 CCGGGTCTTGCTTAGCATGA 60.108 55.000 17.09 17.09 39.73 3.07
80 81 1.718757 GCCGGGTCTTGCTTAGCATG 61.719 60.000 8.05 10.98 38.76 4.06
81 82 1.452108 GCCGGGTCTTGCTTAGCAT 60.452 57.895 8.05 0.00 38.76 3.79
82 83 2.046314 GCCGGGTCTTGCTTAGCA 60.046 61.111 1.39 1.39 36.47 3.49
83 84 2.109126 CAGCCGGGTCTTGCTTAGC 61.109 63.158 1.27 0.00 35.12 3.09
84 85 0.460987 CTCAGCCGGGTCTTGCTTAG 60.461 60.000 1.27 0.00 35.12 2.18
85 86 1.596934 CTCAGCCGGGTCTTGCTTA 59.403 57.895 1.27 0.00 35.12 3.09
86 87 2.348998 CTCAGCCGGGTCTTGCTT 59.651 61.111 1.27 0.00 35.12 3.91
87 88 4.400961 GCTCAGCCGGGTCTTGCT 62.401 66.667 1.27 0.00 38.67 3.91
102 103 3.349481 GAAGTCGAGCTCAGCGGCT 62.349 63.158 15.40 4.31 46.87 5.52
103 104 2.883253 GAAGTCGAGCTCAGCGGC 60.883 66.667 15.40 1.51 0.00 6.53
104 105 2.202676 GGAAGTCGAGCTCAGCGG 60.203 66.667 15.40 0.00 0.00 5.52
105 106 1.803519 GTGGAAGTCGAGCTCAGCG 60.804 63.158 15.40 0.00 0.00 5.18
106 107 1.011451 GTGTGGAAGTCGAGCTCAGC 61.011 60.000 15.40 5.43 0.00 4.26
107 108 0.389166 GGTGTGGAAGTCGAGCTCAG 60.389 60.000 15.40 6.88 0.00 3.35
108 109 1.666011 GGTGTGGAAGTCGAGCTCA 59.334 57.895 15.40 0.00 0.00 4.26
109 110 1.079750 GGGTGTGGAAGTCGAGCTC 60.080 63.158 2.73 2.73 0.00 4.09
110 111 2.932234 CGGGTGTGGAAGTCGAGCT 61.932 63.158 0.00 0.00 0.00 4.09
111 112 2.432628 CGGGTGTGGAAGTCGAGC 60.433 66.667 0.00 0.00 0.00 5.03
112 113 2.432628 GCGGGTGTGGAAGTCGAG 60.433 66.667 0.00 0.00 0.00 4.04
113 114 3.998672 GGCGGGTGTGGAAGTCGA 61.999 66.667 0.00 0.00 0.00 4.20
132 133 3.204827 ATGACTGATTGCGGCGGC 61.205 61.111 9.78 9.68 40.52 6.53
133 134 2.711311 CATGACTGATTGCGGCGG 59.289 61.111 9.78 0.00 0.00 6.13
134 135 2.023741 GCATGACTGATTGCGGCG 59.976 61.111 0.51 0.51 0.00 6.46
138 139 1.466167 ACTCAACGCATGACTGATTGC 59.534 47.619 0.00 0.00 33.47 3.56
139 140 2.998670 AGACTCAACGCATGACTGATTG 59.001 45.455 0.00 0.00 33.47 2.67
140 141 3.325293 AGACTCAACGCATGACTGATT 57.675 42.857 0.00 0.00 33.47 2.57
141 142 3.736433 GCTAGACTCAACGCATGACTGAT 60.736 47.826 0.00 0.00 33.47 2.90
142 143 2.416027 GCTAGACTCAACGCATGACTGA 60.416 50.000 0.00 0.00 33.47 3.41
143 144 1.923204 GCTAGACTCAACGCATGACTG 59.077 52.381 0.00 0.00 33.47 3.51
144 145 1.821753 AGCTAGACTCAACGCATGACT 59.178 47.619 0.00 0.00 33.47 3.41
145 146 1.923204 CAGCTAGACTCAACGCATGAC 59.077 52.381 0.00 0.00 33.47 3.06
146 147 1.546029 ACAGCTAGACTCAACGCATGA 59.454 47.619 0.00 0.00 36.38 3.07
147 148 2.001812 ACAGCTAGACTCAACGCATG 57.998 50.000 0.00 0.00 0.00 4.06
148 149 2.611518 GAACAGCTAGACTCAACGCAT 58.388 47.619 0.00 0.00 0.00 4.73
149 150 1.336887 GGAACAGCTAGACTCAACGCA 60.337 52.381 0.00 0.00 0.00 5.24
150 151 1.351153 GGAACAGCTAGACTCAACGC 58.649 55.000 0.00 0.00 0.00 4.84
151 152 1.404315 GGGGAACAGCTAGACTCAACG 60.404 57.143 0.00 0.00 0.00 4.10
152 153 1.903183 AGGGGAACAGCTAGACTCAAC 59.097 52.381 0.00 0.00 0.00 3.18
153 154 1.902508 CAGGGGAACAGCTAGACTCAA 59.097 52.381 0.00 0.00 0.00 3.02
154 155 1.561643 CAGGGGAACAGCTAGACTCA 58.438 55.000 0.00 0.00 0.00 3.41
155 156 0.176910 GCAGGGGAACAGCTAGACTC 59.823 60.000 0.00 0.00 0.00 3.36
156 157 0.545309 TGCAGGGGAACAGCTAGACT 60.545 55.000 0.00 0.00 34.42 3.24
157 158 0.391793 GTGCAGGGGAACAGCTAGAC 60.392 60.000 0.00 0.00 34.42 2.59
158 159 0.545309 AGTGCAGGGGAACAGCTAGA 60.545 55.000 0.00 0.00 34.42 2.43
159 160 0.392193 CAGTGCAGGGGAACAGCTAG 60.392 60.000 0.00 0.00 34.42 3.42
160 161 1.679311 CAGTGCAGGGGAACAGCTA 59.321 57.895 0.00 0.00 34.42 3.32
161 162 2.433446 CAGTGCAGGGGAACAGCT 59.567 61.111 0.00 0.00 34.42 4.24
162 163 2.674380 CCAGTGCAGGGGAACAGC 60.674 66.667 0.00 0.00 0.00 4.40
163 164 2.674380 GCCAGTGCAGGGGAACAG 60.674 66.667 7.75 0.00 37.47 3.16
164 165 3.497115 TGCCAGTGCAGGGGAACA 61.497 61.111 7.75 0.00 44.23 3.18
173 174 0.731417 CTCAGTAATGCTGCCAGTGC 59.269 55.000 0.00 0.00 44.66 4.40
174 175 2.105006 ACTCAGTAATGCTGCCAGTG 57.895 50.000 0.00 0.00 44.66 3.66
175 176 2.867109 AACTCAGTAATGCTGCCAGT 57.133 45.000 0.00 0.00 44.66 4.00
176 177 4.256920 ACTTAACTCAGTAATGCTGCCAG 58.743 43.478 0.00 0.00 44.66 4.85
177 178 4.253685 GACTTAACTCAGTAATGCTGCCA 58.746 43.478 0.00 0.00 44.66 4.92
178 179 3.307242 CGACTTAACTCAGTAATGCTGCC 59.693 47.826 0.00 0.00 44.66 4.85
179 180 3.307242 CCGACTTAACTCAGTAATGCTGC 59.693 47.826 0.00 0.00 44.66 5.25
180 181 3.307242 GCCGACTTAACTCAGTAATGCTG 59.693 47.826 0.00 0.00 46.34 4.41
181 182 3.056107 TGCCGACTTAACTCAGTAATGCT 60.056 43.478 0.00 0.00 0.00 3.79
182 183 3.259064 TGCCGACTTAACTCAGTAATGC 58.741 45.455 0.00 0.00 0.00 3.56
183 184 5.856126 TTTGCCGACTTAACTCAGTAATG 57.144 39.130 0.00 0.00 0.00 1.90
184 185 5.106673 GCTTTTGCCGACTTAACTCAGTAAT 60.107 40.000 0.00 0.00 40.15 1.89
185 186 4.212636 GCTTTTGCCGACTTAACTCAGTAA 59.787 41.667 0.00 0.00 40.15 2.24
186 187 3.744426 GCTTTTGCCGACTTAACTCAGTA 59.256 43.478 0.00 0.00 40.15 2.74
187 188 2.548480 GCTTTTGCCGACTTAACTCAGT 59.452 45.455 0.00 0.00 40.15 3.41
188 189 3.188895 GCTTTTGCCGACTTAACTCAG 57.811 47.619 0.00 0.00 40.15 3.35
202 203 3.826157 TGATCTTGGGGTGTTAGCTTTTG 59.174 43.478 0.00 0.00 0.00 2.44
203 204 4.112634 TGATCTTGGGGTGTTAGCTTTT 57.887 40.909 0.00 0.00 0.00 2.27
204 205 3.806949 TGATCTTGGGGTGTTAGCTTT 57.193 42.857 0.00 0.00 0.00 3.51
205 206 3.624777 CATGATCTTGGGGTGTTAGCTT 58.375 45.455 0.00 0.00 0.00 3.74
206 207 2.684927 GCATGATCTTGGGGTGTTAGCT 60.685 50.000 10.35 0.00 0.00 3.32
207 208 1.678101 GCATGATCTTGGGGTGTTAGC 59.322 52.381 10.35 0.00 0.00 3.09
208 209 2.301346 GGCATGATCTTGGGGTGTTAG 58.699 52.381 10.35 0.00 0.00 2.34
209 210 1.638070 TGGCATGATCTTGGGGTGTTA 59.362 47.619 10.35 0.00 0.00 2.41
210 211 0.409092 TGGCATGATCTTGGGGTGTT 59.591 50.000 10.35 0.00 0.00 3.32
211 212 0.409092 TTGGCATGATCTTGGGGTGT 59.591 50.000 10.35 0.00 0.00 4.16
212 213 1.684983 GATTGGCATGATCTTGGGGTG 59.315 52.381 10.35 0.00 0.00 4.61
213 214 1.572415 AGATTGGCATGATCTTGGGGT 59.428 47.619 10.35 0.00 29.77 4.95
214 215 2.236766 GAGATTGGCATGATCTTGGGG 58.763 52.381 10.35 0.00 34.13 4.96
215 216 2.940158 TGAGATTGGCATGATCTTGGG 58.060 47.619 10.35 0.00 34.13 4.12
216 217 3.243434 GCTTGAGATTGGCATGATCTTGG 60.243 47.826 10.35 0.00 34.13 3.61
217 218 3.632604 AGCTTGAGATTGGCATGATCTTG 59.367 43.478 0.00 4.25 34.13 3.02
218 219 3.899726 AGCTTGAGATTGGCATGATCTT 58.100 40.909 0.00 0.00 34.13 2.40
219 220 3.579534 AGCTTGAGATTGGCATGATCT 57.420 42.857 1.34 1.34 36.60 2.75
220 221 4.132336 TGTAGCTTGAGATTGGCATGATC 58.868 43.478 0.00 0.00 0.00 2.92
221 222 4.135306 CTGTAGCTTGAGATTGGCATGAT 58.865 43.478 0.00 0.00 0.00 2.45
222 223 3.054875 ACTGTAGCTTGAGATTGGCATGA 60.055 43.478 0.00 0.00 0.00 3.07
223 224 3.276857 ACTGTAGCTTGAGATTGGCATG 58.723 45.455 0.00 0.00 0.00 4.06
224 225 3.641434 ACTGTAGCTTGAGATTGGCAT 57.359 42.857 0.00 0.00 0.00 4.40
225 226 3.118629 CCTACTGTAGCTTGAGATTGGCA 60.119 47.826 9.35 0.00 0.00 4.92
226 227 3.118592 ACCTACTGTAGCTTGAGATTGGC 60.119 47.826 9.35 0.00 0.00 4.52
227 228 4.437239 CACCTACTGTAGCTTGAGATTGG 58.563 47.826 9.35 0.00 0.00 3.16
228 229 3.868077 GCACCTACTGTAGCTTGAGATTG 59.132 47.826 9.35 0.00 0.00 2.67
229 230 3.515502 TGCACCTACTGTAGCTTGAGATT 59.484 43.478 9.35 0.00 0.00 2.40
230 231 3.099905 TGCACCTACTGTAGCTTGAGAT 58.900 45.455 9.35 0.00 0.00 2.75
231 232 2.525368 TGCACCTACTGTAGCTTGAGA 58.475 47.619 9.35 0.00 0.00 3.27
232 233 3.193263 CATGCACCTACTGTAGCTTGAG 58.807 50.000 9.35 0.00 35.05 3.02
233 234 2.677902 GCATGCACCTACTGTAGCTTGA 60.678 50.000 14.21 0.93 35.05 3.02
234 235 1.667724 GCATGCACCTACTGTAGCTTG 59.332 52.381 14.21 9.29 35.85 4.01
235 236 1.740380 CGCATGCACCTACTGTAGCTT 60.740 52.381 19.57 0.00 0.00 3.74
236 237 0.179100 CGCATGCACCTACTGTAGCT 60.179 55.000 19.57 0.00 0.00 3.32
237 238 0.460284 ACGCATGCACCTACTGTAGC 60.460 55.000 19.57 0.09 0.00 3.58
238 239 1.560923 GACGCATGCACCTACTGTAG 58.439 55.000 19.57 7.87 0.00 2.74
239 240 0.174845 GGACGCATGCACCTACTGTA 59.825 55.000 19.57 0.00 0.00 2.74
240 241 1.079127 GGACGCATGCACCTACTGT 60.079 57.895 19.57 5.06 0.00 3.55
241 242 1.079197 TGGACGCATGCACCTACTG 60.079 57.895 24.60 8.38 0.00 2.74
242 243 1.219124 CTGGACGCATGCACCTACT 59.781 57.895 24.60 0.00 0.00 2.57
243 244 0.673644 AACTGGACGCATGCACCTAC 60.674 55.000 24.60 7.26 0.00 3.18
244 245 0.391130 GAACTGGACGCATGCACCTA 60.391 55.000 24.60 11.14 0.00 3.08
245 246 1.672356 GAACTGGACGCATGCACCT 60.672 57.895 24.60 10.47 0.00 4.00
246 247 2.690778 GGAACTGGACGCATGCACC 61.691 63.158 19.57 19.74 0.00 5.01
247 248 2.870372 GGAACTGGACGCATGCAC 59.130 61.111 19.57 10.85 0.00 4.57
248 249 2.741985 CGGAACTGGACGCATGCA 60.742 61.111 19.57 0.00 0.00 3.96
249 250 3.499737 CCGGAACTGGACGCATGC 61.500 66.667 7.91 7.91 0.00 4.06
250 251 2.047274 ACCGGAACTGGACGCATG 60.047 61.111 9.46 0.00 0.00 4.06
251 252 2.047274 CACCGGAACTGGACGCAT 60.047 61.111 9.46 0.00 0.00 4.73
252 253 3.542676 ACACCGGAACTGGACGCA 61.543 61.111 9.46 0.00 0.00 5.24
253 254 2.424705 TACACACCGGAACTGGACGC 62.425 60.000 9.46 0.00 0.00 5.19
254 255 0.032403 TTACACACCGGAACTGGACG 59.968 55.000 9.46 0.14 0.00 4.79
255 256 2.073816 CATTACACACCGGAACTGGAC 58.926 52.381 9.46 0.00 0.00 4.02
256 257 1.609580 GCATTACACACCGGAACTGGA 60.610 52.381 9.46 0.00 0.00 3.86
257 258 0.802494 GCATTACACACCGGAACTGG 59.198 55.000 9.46 0.00 0.00 4.00
258 259 1.808411 AGCATTACACACCGGAACTG 58.192 50.000 9.46 0.00 0.00 3.16
259 260 2.224426 TGAAGCATTACACACCGGAACT 60.224 45.455 9.46 0.00 0.00 3.01
260 261 2.147958 TGAAGCATTACACACCGGAAC 58.852 47.619 9.46 0.00 0.00 3.62
261 262 2.552599 TGAAGCATTACACACCGGAA 57.447 45.000 9.46 0.00 0.00 4.30
262 263 2.422597 CTTGAAGCATTACACACCGGA 58.577 47.619 9.46 0.00 0.00 5.14
263 264 1.135689 GCTTGAAGCATTACACACCGG 60.136 52.381 13.09 0.00 41.89 5.28
264 265 1.806542 AGCTTGAAGCATTACACACCG 59.193 47.619 20.45 0.00 45.56 4.94
265 266 3.181506 GCTAGCTTGAAGCATTACACACC 60.182 47.826 20.45 0.00 45.56 4.16
266 267 3.484229 CGCTAGCTTGAAGCATTACACAC 60.484 47.826 20.45 0.00 45.56 3.82
267 268 2.672874 CGCTAGCTTGAAGCATTACACA 59.327 45.455 20.45 0.00 45.56 3.72
268 269 2.930040 TCGCTAGCTTGAAGCATTACAC 59.070 45.455 20.45 1.56 45.56 2.90
269 270 3.245518 TCGCTAGCTTGAAGCATTACA 57.754 42.857 20.45 0.00 45.56 2.41
270 271 4.093556 ACTTTCGCTAGCTTGAAGCATTAC 59.906 41.667 20.45 4.78 45.56 1.89
271 272 4.253685 ACTTTCGCTAGCTTGAAGCATTA 58.746 39.130 20.45 2.90 45.56 1.90
272 273 3.077359 ACTTTCGCTAGCTTGAAGCATT 58.923 40.909 20.45 1.66 45.56 3.56
273 274 2.675348 GACTTTCGCTAGCTTGAAGCAT 59.325 45.455 20.45 7.13 45.56 3.79
274 275 2.069273 GACTTTCGCTAGCTTGAAGCA 58.931 47.619 20.45 4.61 45.56 3.91
275 276 1.059835 CGACTTTCGCTAGCTTGAAGC 59.940 52.381 13.93 9.59 35.47 3.86
276 277 2.329379 ACGACTTTCGCTAGCTTGAAG 58.671 47.619 13.93 15.01 45.12 3.02
277 278 2.433868 ACGACTTTCGCTAGCTTGAA 57.566 45.000 13.93 7.06 45.12 2.69
278 279 2.726989 CGTACGACTTTCGCTAGCTTGA 60.727 50.000 10.44 0.00 45.12 3.02
279 280 1.578023 CGTACGACTTTCGCTAGCTTG 59.422 52.381 10.44 0.00 45.12 4.01
280 281 1.198637 ACGTACGACTTTCGCTAGCTT 59.801 47.619 24.41 0.00 45.12 3.74
281 282 0.801251 ACGTACGACTTTCGCTAGCT 59.199 50.000 24.41 0.00 45.12 3.32
282 283 1.316735 CAACGTACGACTTTCGCTAGC 59.683 52.381 24.41 4.06 45.12 3.42
283 284 2.337644 CACAACGTACGACTTTCGCTAG 59.662 50.000 24.41 0.00 45.12 3.42
284 285 2.309693 CACAACGTACGACTTTCGCTA 58.690 47.619 24.41 0.00 45.12 4.26
285 286 1.126079 CACAACGTACGACTTTCGCT 58.874 50.000 24.41 0.00 45.12 4.93
286 287 0.160182 CCACAACGTACGACTTTCGC 59.840 55.000 24.41 0.00 45.12 4.70
287 288 0.160182 GCCACAACGTACGACTTTCG 59.840 55.000 24.41 5.50 46.93 3.46
288 289 0.509929 GGCCACAACGTACGACTTTC 59.490 55.000 24.41 5.99 0.00 2.62
289 290 1.216941 CGGCCACAACGTACGACTTT 61.217 55.000 24.41 2.51 0.00 2.66
290 291 1.662446 CGGCCACAACGTACGACTT 60.662 57.895 24.41 3.37 0.00 3.01
291 292 2.049802 CGGCCACAACGTACGACT 60.050 61.111 24.41 5.45 0.00 4.18
292 293 1.661197 TTCGGCCACAACGTACGAC 60.661 57.895 24.41 3.59 32.85 4.34
293 294 1.661197 GTTCGGCCACAACGTACGA 60.661 57.895 24.41 0.00 0.00 3.43
294 295 1.662446 AGTTCGGCCACAACGTACG 60.662 57.895 15.01 15.01 36.85 3.67
295 296 0.877213 ACAGTTCGGCCACAACGTAC 60.877 55.000 2.24 0.00 32.79 3.67
296 297 0.672889 TACAGTTCGGCCACAACGTA 59.327 50.000 2.24 8.93 0.00 3.57
297 298 0.599204 CTACAGTTCGGCCACAACGT 60.599 55.000 2.24 9.84 0.00 3.99
298 299 0.599204 ACTACAGTTCGGCCACAACG 60.599 55.000 2.24 4.43 0.00 4.10
299 300 0.865769 CACTACAGTTCGGCCACAAC 59.134 55.000 2.24 4.82 0.00 3.32
300 301 0.753867 TCACTACAGTTCGGCCACAA 59.246 50.000 2.24 0.00 0.00 3.33
301 302 0.973632 ATCACTACAGTTCGGCCACA 59.026 50.000 2.24 0.00 0.00 4.17
302 303 2.094762 AATCACTACAGTTCGGCCAC 57.905 50.000 2.24 0.00 0.00 5.01
303 304 2.851263 AAATCACTACAGTTCGGCCA 57.149 45.000 2.24 0.00 0.00 5.36
304 305 3.751698 AGAAAAATCACTACAGTTCGGCC 59.248 43.478 0.00 0.00 0.00 6.13
305 306 4.691216 AGAGAAAAATCACTACAGTTCGGC 59.309 41.667 0.00 0.00 0.00 5.54
306 307 9.021863 GTATAGAGAAAAATCACTACAGTTCGG 57.978 37.037 0.00 0.00 0.00 4.30
307 308 9.790389 AGTATAGAGAAAAATCACTACAGTTCG 57.210 33.333 0.00 0.00 0.00 3.95
335 336 9.817809 ATGATAGTACATTTAGTGTCGTTTGAT 57.182 29.630 0.00 0.00 42.29 2.57
336 337 9.297586 GATGATAGTACATTTAGTGTCGTTTGA 57.702 33.333 0.00 0.00 42.29 2.69
337 338 8.540492 GGATGATAGTACATTTAGTGTCGTTTG 58.460 37.037 0.00 0.00 42.29 2.93
338 339 8.475639 AGGATGATAGTACATTTAGTGTCGTTT 58.524 33.333 0.00 0.00 42.29 3.60
339 340 8.008513 AGGATGATAGTACATTTAGTGTCGTT 57.991 34.615 0.00 0.00 42.29 3.85
340 341 7.502895 AGAGGATGATAGTACATTTAGTGTCGT 59.497 37.037 0.00 0.00 42.29 4.34
341 342 7.877003 AGAGGATGATAGTACATTTAGTGTCG 58.123 38.462 0.00 0.00 42.29 4.35
350 351 9.386122 AGGTAATGAAAGAGGATGATAGTACAT 57.614 33.333 0.00 0.00 0.00 2.29
351 352 8.783660 AGGTAATGAAAGAGGATGATAGTACA 57.216 34.615 0.00 0.00 0.00 2.90
354 355 9.607333 TCATAGGTAATGAAAGAGGATGATAGT 57.393 33.333 0.00 0.00 41.75 2.12
367 368 7.528712 ACATGGTCTGTGTTCATAGGTAATGAA 60.529 37.037 0.00 0.00 43.18 2.57
368 369 6.070251 ACATGGTCTGTGTTCATAGGTAATGA 60.070 38.462 0.00 0.00 38.65 2.57
369 370 6.115446 ACATGGTCTGTGTTCATAGGTAATG 58.885 40.000 0.00 2.38 36.48 1.90
370 371 6.313519 ACATGGTCTGTGTTCATAGGTAAT 57.686 37.500 0.00 0.00 36.48 1.89
371 372 5.755409 ACATGGTCTGTGTTCATAGGTAA 57.245 39.130 0.00 0.00 36.48 2.85
372 373 5.755409 AACATGGTCTGTGTTCATAGGTA 57.245 39.130 0.00 0.00 38.39 3.08
373 374 4.640771 AACATGGTCTGTGTTCATAGGT 57.359 40.909 0.00 0.00 38.39 3.08
374 375 5.964958 AAAACATGGTCTGTGTTCATAGG 57.035 39.130 0.00 0.00 38.76 2.57
375 376 8.322906 TCTAAAAACATGGTCTGTGTTCATAG 57.677 34.615 0.00 0.00 38.76 2.23
376 377 8.684386 TTCTAAAAACATGGTCTGTGTTCATA 57.316 30.769 0.00 0.00 38.76 2.15
377 378 7.502226 TCTTCTAAAAACATGGTCTGTGTTCAT 59.498 33.333 0.00 0.00 38.76 2.57
378 379 6.826231 TCTTCTAAAAACATGGTCTGTGTTCA 59.174 34.615 0.00 0.00 38.76 3.18
379 380 7.259290 TCTTCTAAAAACATGGTCTGTGTTC 57.741 36.000 0.00 0.00 38.76 3.18
380 381 7.556275 TCTTCTTCTAAAAACATGGTCTGTGTT 59.444 33.333 0.00 0.00 41.28 3.32
381 382 7.054124 TCTTCTTCTAAAAACATGGTCTGTGT 58.946 34.615 0.00 0.00 38.39 3.72
382 383 7.496529 TCTTCTTCTAAAAACATGGTCTGTG 57.503 36.000 0.00 0.00 38.39 3.66
383 384 8.519799 TTTCTTCTTCTAAAAACATGGTCTGT 57.480 30.769 0.00 0.00 40.84 3.41
384 385 9.801873 TTTTTCTTCTTCTAAAAACATGGTCTG 57.198 29.630 0.00 0.00 31.46 3.51
398 399 9.396022 TGTGTTCAGAGTTATTTTTCTTCTTCT 57.604 29.630 0.00 0.00 0.00 2.85
400 401 9.956720 CATGTGTTCAGAGTTATTTTTCTTCTT 57.043 29.630 0.00 0.00 0.00 2.52
401 402 8.571336 CCATGTGTTCAGAGTTATTTTTCTTCT 58.429 33.333 0.00 0.00 0.00 2.85
402 403 7.327032 GCCATGTGTTCAGAGTTATTTTTCTTC 59.673 37.037 0.00 0.00 0.00 2.87
403 404 7.147976 GCCATGTGTTCAGAGTTATTTTTCTT 58.852 34.615 0.00 0.00 0.00 2.52
404 405 6.294731 GGCCATGTGTTCAGAGTTATTTTTCT 60.295 38.462 0.00 0.00 0.00 2.52
405 406 5.863935 GGCCATGTGTTCAGAGTTATTTTTC 59.136 40.000 0.00 0.00 0.00 2.29
406 407 5.279456 GGGCCATGTGTTCAGAGTTATTTTT 60.279 40.000 4.39 0.00 0.00 1.94
416 417 0.107508 ATCTCGGGCCATGTGTTCAG 60.108 55.000 4.39 0.00 0.00 3.02
418 419 2.325583 TTATCTCGGGCCATGTGTTC 57.674 50.000 4.39 0.00 0.00 3.18
427 428 4.436986 GCTAACAAGTGTTTTATCTCGGGC 60.437 45.833 1.35 0.00 39.31 6.13
428 429 4.693566 TGCTAACAAGTGTTTTATCTCGGG 59.306 41.667 1.35 0.00 39.31 5.14
429 430 5.163854 CCTGCTAACAAGTGTTTTATCTCGG 60.164 44.000 1.35 0.00 39.31 4.63
431 432 6.803154 ACCTGCTAACAAGTGTTTTATCTC 57.197 37.500 1.35 0.00 39.31 2.75
434 435 5.508994 GCCAACCTGCTAACAAGTGTTTTAT 60.509 40.000 1.35 0.00 39.31 1.40
435 436 4.202070 GCCAACCTGCTAACAAGTGTTTTA 60.202 41.667 1.35 0.00 39.31 1.52
452 454 1.151668 CTAGCTATCGCATGCCAACC 58.848 55.000 13.15 0.00 39.10 3.77
453 455 1.528586 CACTAGCTATCGCATGCCAAC 59.471 52.381 13.15 0.00 39.10 3.77
458 460 6.146673 TGAATGATTTCACTAGCTATCGCATG 59.853 38.462 0.00 0.00 36.94 4.06
459 461 6.226052 TGAATGATTTCACTAGCTATCGCAT 58.774 36.000 0.00 0.00 36.94 4.73
471 473 8.292448 ACTGCCGAATTATATGAATGATTTCAC 58.708 33.333 0.00 0.00 44.36 3.18
476 478 7.984422 TTCACTGCCGAATTATATGAATGAT 57.016 32.000 0.00 0.00 0.00 2.45
477 479 7.281999 TGTTTCACTGCCGAATTATATGAATGA 59.718 33.333 0.00 0.00 0.00 2.57
483 485 8.774586 GTTCTATGTTTCACTGCCGAATTATAT 58.225 33.333 0.00 0.00 0.00 0.86
491 493 3.067106 AGTGTTCTATGTTTCACTGCCG 58.933 45.455 0.00 0.00 39.27 5.69
497 499 7.272244 TGAACTCTCAAGTGTTCTATGTTTCA 58.728 34.615 19.79 2.25 44.37 2.69
506 508 4.060038 TCCACTGAACTCTCAAGTGTTC 57.940 45.455 14.85 14.85 44.34 3.18
527 529 4.927049 ACTGACCAAATCCATTCAGACAT 58.073 39.130 4.51 0.00 38.19 3.06
533 535 8.831715 AATTGTTTAACTGACCAAATCCATTC 57.168 30.769 0.00 0.00 0.00 2.67
537 539 8.831715 ATTGAATTGTTTAACTGACCAAATCC 57.168 30.769 0.00 0.00 0.00 3.01
538 540 9.696917 AGATTGAATTGTTTAACTGACCAAATC 57.303 29.630 0.00 0.49 0.00 2.17
576 578 4.400567 AGGAAAAAGTAAGATGGCTCATGC 59.599 41.667 0.00 0.00 38.76 4.06
578 580 6.012745 ACAAGGAAAAAGTAAGATGGCTCAT 58.987 36.000 0.00 0.00 0.00 2.90
585 587 8.189119 TGCCATTTACAAGGAAAAAGTAAGAT 57.811 30.769 0.00 0.00 0.00 2.40
586 588 7.589958 TGCCATTTACAAGGAAAAAGTAAGA 57.410 32.000 0.00 0.00 0.00 2.10
587 589 8.655651 TTTGCCATTTACAAGGAAAAAGTAAG 57.344 30.769 0.00 0.00 29.41 2.34
588 590 9.449719 TTTTTGCCATTTACAAGGAAAAAGTAA 57.550 25.926 0.00 0.00 42.00 2.24
590 592 7.609918 ACTTTTTGCCATTTACAAGGAAAAAGT 59.390 29.630 21.08 21.08 42.00 2.66
591 593 7.984391 ACTTTTTGCCATTTACAAGGAAAAAG 58.016 30.769 20.10 20.10 42.00 2.27
594 596 7.106239 TCAACTTTTTGCCATTTACAAGGAAA 58.894 30.769 0.00 0.00 32.17 3.13
598 600 8.063630 GTGATTCAACTTTTTGCCATTTACAAG 58.936 33.333 0.00 0.00 32.17 3.16
615 617 5.967674 CCGCAATGATAGAAAGTGATTCAAC 59.032 40.000 0.00 0.00 40.72 3.18
639 659 3.484334 ACGCCGTAAAGACTAGTTCTC 57.516 47.619 0.00 0.00 31.02 2.87
640 660 3.572584 CAACGCCGTAAAGACTAGTTCT 58.427 45.455 0.00 0.00 35.32 3.01
644 664 1.389106 GTGCAACGCCGTAAAGACTAG 59.611 52.381 0.00 0.00 0.00 2.57
646 666 0.249741 AGTGCAACGCCGTAAAGACT 60.250 50.000 0.00 0.00 45.86 3.24
653 673 1.447838 CTCCATAGTGCAACGCCGT 60.448 57.895 0.00 0.00 45.86 5.68
664 702 8.724229 TGAAATATTCATGCGAAATCTCCATAG 58.276 33.333 0.00 0.00 34.08 2.23
686 724 8.169977 AGCAAATCTACTGATTTCTGTTGAAA 57.830 30.769 6.01 0.00 46.50 2.69
689 727 6.740002 CGAAGCAAATCTACTGATTTCTGTTG 59.260 38.462 1.55 0.00 46.50 3.33
690 728 6.428159 ACGAAGCAAATCTACTGATTTCTGTT 59.572 34.615 0.00 0.00 46.50 3.16
691 729 5.934625 ACGAAGCAAATCTACTGATTTCTGT 59.065 36.000 0.00 0.00 46.50 3.41
692 730 6.414408 ACGAAGCAAATCTACTGATTTCTG 57.586 37.500 0.00 0.00 46.50 3.02
693 731 6.428159 ACAACGAAGCAAATCTACTGATTTCT 59.572 34.615 0.00 1.18 46.50 2.52
717 755 5.756833 CCGTAGTGGGGACAAAAAGATATAC 59.243 44.000 0.00 0.00 46.06 1.47
731 769 3.057736 CGATAATGACTACCGTAGTGGGG 60.058 52.174 16.05 0.00 44.64 4.96
734 772 7.697710 TGTTTAACGATAATGACTACCGTAGTG 59.302 37.037 16.05 2.54 39.59 2.74
739 777 6.267817 TCCTGTTTAACGATAATGACTACCG 58.732 40.000 0.00 0.00 0.00 4.02
756 794 1.308998 CGCACTTGAACCTCCTGTTT 58.691 50.000 0.00 0.00 37.29 2.83
762 800 4.965119 AATAAATCCGCACTTGAACCTC 57.035 40.909 0.00 0.00 0.00 3.85
788 4798 2.936498 AGCACTAACGTGTTATCATGCC 59.064 45.455 14.86 4.24 43.16 4.40
798 4808 2.658285 ACGTGTAGAAGCACTAACGTG 58.342 47.619 18.95 0.00 41.77 4.49
802 4812 3.859627 GCTCCAACGTGTAGAAGCACTAA 60.860 47.826 0.00 0.00 37.24 2.24
816 4826 0.029300 CAACACCAAGTGCTCCAACG 59.971 55.000 0.00 0.00 36.98 4.10
819 4829 1.388547 GAACAACACCAAGTGCTCCA 58.611 50.000 0.00 0.00 36.98 3.86
859 4875 4.864704 TTTTCCCCTGTGTTCATTAAGC 57.135 40.909 0.00 0.00 0.00 3.09
863 4879 2.302733 GGCATTTTCCCCTGTGTTCATT 59.697 45.455 0.00 0.00 0.00 2.57
874 4891 5.419155 GCTCTATTTATAGGGGCATTTTCCC 59.581 44.000 0.00 0.00 45.80 3.97
878 4895 5.313240 TGGAGCTCTATTTATAGGGGCATTT 59.687 40.000 14.64 0.47 34.50 2.32
879 4896 4.852118 TGGAGCTCTATTTATAGGGGCATT 59.148 41.667 14.64 0.94 34.50 3.56
880 4897 4.438913 TGGAGCTCTATTTATAGGGGCAT 58.561 43.478 14.64 4.40 34.50 4.40
899 4916 6.115446 GTGTGAGATGAATATTTGGTCTGGA 58.885 40.000 0.00 0.00 0.00 3.86
904 4921 4.949856 GGGTGTGTGAGATGAATATTTGGT 59.050 41.667 0.00 0.00 0.00 3.67
905 4923 5.195940 AGGGTGTGTGAGATGAATATTTGG 58.804 41.667 0.00 0.00 0.00 3.28
910 4928 4.080919 CCTTGAGGGTGTGTGAGATGAATA 60.081 45.833 0.00 0.00 0.00 1.75
928 4946 3.306502 CGGTCTTAGCAGGTTTACCTTGA 60.307 47.826 0.00 0.00 46.09 3.02
938 4956 2.289444 TGGAGTTTTCGGTCTTAGCAGG 60.289 50.000 0.00 0.00 0.00 4.85
940 4958 3.478857 TTGGAGTTTTCGGTCTTAGCA 57.521 42.857 0.00 0.00 0.00 3.49
950 4971 8.225603 TCTATTGGATTGCTATTGGAGTTTTC 57.774 34.615 0.00 0.00 0.00 2.29
954 4975 7.836183 AGTTTTCTATTGGATTGCTATTGGAGT 59.164 33.333 0.00 0.00 0.00 3.85
971 4992 9.632638 ATGCTGGTGATGTATTTAGTTTTCTAT 57.367 29.630 0.00 0.00 31.96 1.98
980 5001 5.009911 GCCATTGATGCTGGTGATGTATTTA 59.990 40.000 0.00 0.00 36.10 1.40
986 5007 0.387929 GGCCATTGATGCTGGTGATG 59.612 55.000 0.00 0.00 36.10 3.07
988 5010 0.251698 TTGGCCATTGATGCTGGTGA 60.252 50.000 6.09 0.00 36.10 4.02
989 5011 0.174845 CTTGGCCATTGATGCTGGTG 59.825 55.000 6.09 0.00 36.10 4.17
999 5021 4.102113 GCCTGTGACTTGGCCATT 57.898 55.556 6.09 0.00 43.11 3.16
1005 5027 0.242825 CAGCCAATGCCTGTGACTTG 59.757 55.000 0.00 0.00 38.69 3.16
1069 5091 1.282570 CGCAAACGCCATGAACACT 59.717 52.632 0.00 0.00 0.00 3.55
1196 13884 1.394917 CTTTGTAGCGACAGATGCACC 59.605 52.381 0.00 0.00 36.76 5.01
1206 13894 1.748879 GGCCATGCCTTTGTAGCGA 60.749 57.895 0.00 0.00 46.69 4.93
1312 14000 6.820335 TGGATAGTACTTCACATCATCAAGG 58.180 40.000 0.00 0.00 0.00 3.61
1322 14010 8.247562 CCTAGATGCTTATGGATAGTACTTCAC 58.752 40.741 0.00 0.00 0.00 3.18
1415 14111 0.598065 GACCGAGCACAATGCCTTTT 59.402 50.000 0.00 0.00 46.52 2.27
1470 14170 4.954092 ACTGCTAATCAAAGCTTAGTGC 57.046 40.909 0.00 0.00 43.19 4.40
1473 14173 6.609237 TGCATACTGCTAATCAAAGCTTAG 57.391 37.500 0.00 0.00 45.31 2.18
1509 14222 2.752354 ACTGCGCATATGGCACTTTTAA 59.248 40.909 12.24 0.00 45.17 1.52
1518 14231 2.183478 TTATGGGACTGCGCATATGG 57.817 50.000 12.24 0.40 45.64 2.74
1520 14233 3.141398 CAGTTTATGGGACTGCGCATAT 58.859 45.455 12.24 1.02 45.64 1.78
1524 14237 2.098293 CCAGTTTATGGGACTGCGC 58.902 57.895 0.00 0.00 46.36 6.09
1552 14265 7.789026 ACAAGGTTACCAGTATAAGATACCAC 58.211 38.462 3.51 0.00 0.00 4.16
1554 14267 9.924650 CATACAAGGTTACCAGTATAAGATACC 57.075 37.037 15.62 0.00 30.03 2.73
1620 14333 3.869246 ACTTGTTCACTAGGAAACACACG 59.131 43.478 10.65 6.46 37.23 4.49
1691 14409 0.321741 TGCCCGGCGTGAGATTAAAA 60.322 50.000 6.01 0.00 0.00 1.52
1732 14450 2.058057 CGATTTGGTTTTTCGGCTTGG 58.942 47.619 0.00 0.00 0.00 3.61
1840 14559 2.731968 GCAATTCGTGTACCATGGCTTG 60.732 50.000 13.04 4.37 0.00 4.01
1929 14649 4.189580 GCGGGGGCTAGCAATGGA 62.190 66.667 18.24 0.00 0.00 3.41
1948 14668 5.163550 CGAGTCACATGACCTAGGTTTCATA 60.164 44.000 17.53 0.00 45.85 2.15
2026 14746 3.311110 GGGAGCGTGGGACTGTGA 61.311 66.667 0.00 0.00 0.00 3.58
2040 14760 2.863484 AATGCCTGTGGGGTGGGA 60.863 61.111 0.00 0.00 37.43 4.37
2064 14784 2.662596 GGATGTGGACCTGCGACA 59.337 61.111 0.00 0.00 39.62 4.35
2070 14790 2.172483 GACAGTGCGGATGTGGACCT 62.172 60.000 0.00 0.00 0.00 3.85
2072 14792 2.094659 CGACAGTGCGGATGTGGAC 61.095 63.158 0.00 0.00 0.00 4.02
2149 14869 1.282875 CTGCATCGCCGAGTCGATA 59.717 57.895 15.64 0.00 46.22 2.92
2167 14911 7.112565 GTGTTATTTGAATCATCGATGTCATGC 59.887 37.037 24.09 11.23 0.00 4.06
2179 14923 7.315142 GCATCCTTCTTGTGTTATTTGAATCA 58.685 34.615 0.00 0.00 0.00 2.57
2188 14932 2.107378 TGGTGGCATCCTTCTTGTGTTA 59.893 45.455 0.00 0.00 0.00 2.41
2189 14933 1.133513 TGGTGGCATCCTTCTTGTGTT 60.134 47.619 0.00 0.00 0.00 3.32
2227 14971 2.540265 ATCCATGTCTCTTGATCGGC 57.460 50.000 0.00 0.00 0.00 5.54


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.