Multiple sequence alignment - TraesCS5D01G081600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G081600 chr5D 100.000 7700 0 0 1 7700 82178839 82186538 0.000000e+00 14220
1 TraesCS5D01G081600 chr5D 87.966 349 37 5 1 345 544788359 544788706 2.590000e-109 407
2 TraesCS5D01G081600 chr5B 95.212 3780 145 25 3245 7008 90501867 90505626 0.000000e+00 5945
3 TraesCS5D01G081600 chr5B 96.131 2223 57 17 446 2654 90499288 90501495 0.000000e+00 3602
4 TraesCS5D01G081600 chr5B 94.681 376 20 0 2734 3109 90501492 90501867 1.110000e-162 584
5 TraesCS5D01G081600 chr5B 87.591 137 15 2 3426 3560 681001412 681001276 2.880000e-34 158
6 TraesCS5D01G081600 chr5B 78.439 269 30 16 3301 3560 415776423 415776672 4.810000e-32 150
7 TraesCS5D01G081600 chr5B 92.708 96 7 0 2645 2740 406061525 406061620 1.040000e-28 139
8 TraesCS5D01G081600 chr5B 89.423 104 6 4 7088 7190 90505729 90505828 8.110000e-25 126
9 TraesCS5D01G081600 chr5A 95.545 3367 116 20 3655 7000 78152765 78156118 0.000000e+00 5356
10 TraesCS5D01G081600 chr5A 96.208 2215 58 16 446 2654 78143997 78146191 0.000000e+00 3602
11 TraesCS5D01G081600 chr5A 91.319 887 50 14 2796 3659 78146223 78147105 0.000000e+00 1186
12 TraesCS5D01G081600 chr5A 90.169 651 37 13 7063 7698 78156368 78157006 0.000000e+00 822
13 TraesCS5D01G081600 chr5A 92.771 83 6 0 7006 7088 78156276 78156358 3.770000e-23 121
14 TraesCS5D01G081600 chr4D 90.007 2922 228 38 3942 6842 408572514 408569636 0.000000e+00 3720
15 TraesCS5D01G081600 chr4D 92.683 1435 83 11 1223 2654 408577561 408576146 0.000000e+00 2049
16 TraesCS5D01G081600 chr4D 86.952 981 83 26 2751 3706 408576096 408575136 0.000000e+00 1061
17 TraesCS5D01G081600 chr4D 87.429 350 35 9 1 345 6757078 6757423 2.010000e-105 394
18 TraesCS5D01G081600 chr4D 86.895 351 36 10 1 344 374339925 374339578 1.210000e-102 385
19 TraesCS5D01G081600 chr4D 84.836 244 26 6 3704 3939 408572913 408572673 1.290000e-57 235
20 TraesCS5D01G081600 chr4D 92.254 142 4 2 962 1096 408578230 408578089 2.190000e-45 195
21 TraesCS5D01G081600 chr4B 89.628 2902 233 40 3942 6820 507365632 507368488 0.000000e+00 3629
22 TraesCS5D01G081600 chr4B 91.652 1713 103 18 959 2654 507362525 507364214 0.000000e+00 2335
23 TraesCS5D01G081600 chr4B 86.661 1222 114 31 2751 3939 507364264 507365469 0.000000e+00 1308
24 TraesCS5D01G081600 chr4B 89.535 86 8 1 7259 7343 607437421 607437506 2.940000e-19 108
25 TraesCS5D01G081600 chr4A 92.443 1707 103 16 962 2654 80145889 80144195 0.000000e+00 2414
26 TraesCS5D01G081600 chr4A 89.064 1902 145 35 3942 5816 80142775 80140910 0.000000e+00 2302
27 TraesCS5D01G081600 chr4A 86.974 1213 118 27 2757 3939 80144140 80142938 0.000000e+00 1328
28 TraesCS5D01G081600 chr4A 90.591 999 80 8 5782 6778 80140911 80139925 0.000000e+00 1312
29 TraesCS5D01G081600 chr4A 85.463 227 27 6 3260 3483 715637020 715637243 1.670000e-56 231
30 TraesCS5D01G081600 chr4A 85.463 227 27 6 3260 3483 715917379 715917156 1.670000e-56 231
31 TraesCS5D01G081600 chr7A 86.819 349 38 6 1 344 628357379 628357034 4.360000e-102 383
32 TraesCS5D01G081600 chr6D 85.876 354 42 7 1 349 471528343 471527993 3.390000e-98 370
33 TraesCS5D01G081600 chr7B 86.040 351 37 10 1 344 498643748 498644093 4.390000e-97 366
34 TraesCS5D01G081600 chr7B 90.654 107 7 2 2631 2737 829847 829744 1.040000e-28 139
35 TraesCS5D01G081600 chr3D 85.593 354 39 11 1 347 22718819 22718471 2.040000e-95 361
36 TraesCS5D01G081600 chr3D 85.552 353 41 10 1 349 44061012 44061358 2.040000e-95 361
37 TraesCS5D01G081600 chr3D 81.535 417 54 14 1933 2339 477626429 477626832 9.640000e-84 322
38 TraesCS5D01G081600 chr3D 93.684 95 5 1 2649 2743 54370500 54370407 2.900000e-29 141
39 TraesCS5D01G081600 chr3D 93.548 93 6 0 2647 2739 441134577 441134485 1.040000e-28 139
40 TraesCS5D01G081600 chr3D 95.455 66 3 0 647 712 101660262 101660197 1.060000e-18 106
41 TraesCS5D01G081600 chr2D 85.511 352 43 8 1 347 629731906 629731558 2.040000e-95 361
42 TraesCS5D01G081600 chr2D 88.043 92 9 2 7260 7350 87811977 87812067 2.940000e-19 108
43 TraesCS5D01G081600 chr2B 84.138 290 40 6 3275 3560 473307830 473307543 7.610000e-70 276
44 TraesCS5D01G081600 chr2B 89.535 86 8 1 7260 7344 767653004 767653089 2.940000e-19 108
45 TraesCS5D01G081600 chr7D 93.878 98 5 1 2648 2744 22964251 22964348 6.230000e-31 147
46 TraesCS5D01G081600 chr7D 93.617 94 5 1 2651 2744 426558897 426558989 1.040000e-28 139
47 TraesCS5D01G081600 chr7D 93.478 92 5 1 2646 2737 312463930 312464020 1.350000e-27 135
48 TraesCS5D01G081600 chr7D 91.089 101 7 2 2647 2745 494673686 494673586 1.350000e-27 135
49 TraesCS5D01G081600 chr7D 86.813 91 11 1 7255 7344 575717678 575717768 4.920000e-17 100
50 TraesCS5D01G081600 chr1B 92.708 96 6 1 2649 2744 630905807 630905901 3.750000e-28 137
51 TraesCS5D01G081600 chr2A 91.089 101 8 1 661 761 736251812 736251911 1.350000e-27 135
52 TraesCS5D01G081600 chrUn 87.640 89 10 1 7256 7343 163394432 163394520 1.370000e-17 102
53 TraesCS5D01G081600 chrUn 87.640 89 10 1 7256 7343 325472444 325472532 1.370000e-17 102
54 TraesCS5D01G081600 chrUn 87.640 89 10 1 7256 7343 384522694 384522782 1.370000e-17 102
55 TraesCS5D01G081600 chrUn 87.640 89 10 1 7259 7346 386040334 386040246 1.370000e-17 102


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G081600 chr5D 82178839 82186538 7699 False 14220.000000 14220 100.000000 1 7700 1 chr5D.!!$F1 7699
1 TraesCS5D01G081600 chr5B 90499288 90505828 6540 False 2564.250000 5945 93.861750 446 7190 4 chr5B.!!$F3 6744
2 TraesCS5D01G081600 chr5A 78143997 78147105 3108 False 2394.000000 3602 93.763500 446 3659 2 chr5A.!!$F1 3213
3 TraesCS5D01G081600 chr5A 78152765 78157006 4241 False 2099.666667 5356 92.828333 3655 7698 3 chr5A.!!$F2 4043
4 TraesCS5D01G081600 chr4D 408569636 408578230 8594 True 1452.000000 3720 89.346400 962 6842 5 chr4D.!!$R2 5880
5 TraesCS5D01G081600 chr4B 507362525 507368488 5963 False 2424.000000 3629 89.313667 959 6820 3 chr4B.!!$F2 5861
6 TraesCS5D01G081600 chr4A 80139925 80145889 5964 True 1839.000000 2414 89.768000 962 6778 4 chr4A.!!$R2 5816

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
77 78 0.038526 TTTCCTTCCGCGAGAGTCAC 60.039 55.000 8.23 0.00 0.00 3.67 F
356 357 0.102300 AAAAACTTCCTGTGCGCCAC 59.898 50.000 4.18 3.72 34.56 5.01 F
359 360 0.107831 AACTTCCTGTGCGCCACTTA 59.892 50.000 4.18 0.00 35.11 2.24 F
1104 1135 0.180171 CGCACCTGGGGAACATCATA 59.820 55.000 0.00 0.00 0.00 2.15 F
1221 1257 0.396435 TTTGGTCGTGATCTGCAGGT 59.604 50.000 15.13 6.50 34.14 4.00 F
1906 2339 0.546747 TCGTGGAGGGGAAATGTCCT 60.547 55.000 0.82 0.00 44.28 3.85 F
3733 6470 0.815734 CAATTGCAGAGGCTCTTGGG 59.184 55.000 15.90 5.01 41.91 4.12 F
3893 6638 0.185175 ACCTTTCTTTTCCGGTGCCT 59.815 50.000 0.00 0.00 0.00 4.75 F
4068 6987 1.121378 TCGGGTTATGCCGTTATGGA 58.879 50.000 0.00 0.00 42.00 3.41 F
5681 8631 1.339291 AGTTGCTGAAAAGCTCAAGGC 59.661 47.619 0.00 0.00 42.19 4.35 F
6561 9560 1.205893 CCTGAGGCTTCTCTTAACGCT 59.794 52.381 0.00 0.00 38.32 5.07 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1593 2026 0.034477 ACCTACATTTTCAGCCGGGG 60.034 55.000 2.18 0.00 0.00 5.73 R
1954 2387 2.093288 TGGGTTCAACAATTTGCTGCAA 60.093 40.909 11.69 11.69 32.17 4.08 R
2687 3124 5.047519 ACCGCTTTTGATACTACACTAGTGT 60.048 40.000 30.13 30.13 46.87 3.55 R
2998 3473 0.824759 CCACTGGCTGGGAGTACTAC 59.175 60.000 0.00 0.00 36.18 2.73 R
3445 3957 3.247948 TCACCAGTTCCCAGTAGTGTA 57.752 47.619 0.00 0.00 0.00 2.90 R
3874 6619 0.185175 AGGCACCGGAAAAGAAAGGT 59.815 50.000 9.46 0.00 37.49 3.50 R
5160 8109 0.252479 CACAGGCTGCTGGATCTTCT 59.748 55.000 15.89 0.00 0.00 2.85 R
6093 9089 1.003580 GGTGCCTCTTCTCCAACATCA 59.996 52.381 0.00 0.00 0.00 3.07 R
6251 9247 2.224523 ACTTTCCGGTTCTGCTCATTCA 60.225 45.455 0.00 0.00 0.00 2.57 R
6636 9635 0.030638 CAGCCAAAGTTGTGAACGGG 59.969 55.000 0.00 0.00 36.23 5.28 R
7388 10590 0.180171 AACACTACCTGCACTGCACA 59.820 50.000 0.00 0.00 33.79 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.847516 TCGCGAGAATCACGGCCG 62.848 66.667 26.86 26.86 41.71 6.13
19 20 2.813908 GCGAGAATCACGGCCGTT 60.814 61.111 32.11 15.95 33.17 4.44
20 21 2.799540 GCGAGAATCACGGCCGTTC 61.800 63.158 32.11 24.36 33.17 3.95
21 22 2.165301 CGAGAATCACGGCCGTTCC 61.165 63.158 32.11 17.50 33.17 3.62
22 23 1.218316 GAGAATCACGGCCGTTCCT 59.782 57.895 32.11 22.05 33.17 3.36
23 24 0.806492 GAGAATCACGGCCGTTCCTC 60.806 60.000 32.11 25.57 33.17 3.71
24 25 1.814169 GAATCACGGCCGTTCCTCC 60.814 63.158 32.11 13.36 0.00 4.30
25 26 2.240162 GAATCACGGCCGTTCCTCCT 62.240 60.000 32.11 10.10 0.00 3.69
26 27 2.240162 AATCACGGCCGTTCCTCCTC 62.240 60.000 32.11 0.00 0.00 3.71
27 28 4.796231 CACGGCCGTTCCTCCTCG 62.796 72.222 32.11 11.33 0.00 4.63
29 30 3.755628 CGGCCGTTCCTCCTCGAA 61.756 66.667 19.50 0.00 0.00 3.71
30 31 2.660802 GGCCGTTCCTCCTCGAAA 59.339 61.111 0.00 0.00 0.00 3.46
31 32 1.004200 GGCCGTTCCTCCTCGAAAA 60.004 57.895 0.00 0.00 0.00 2.29
32 33 1.296755 GGCCGTTCCTCCTCGAAAAC 61.297 60.000 0.00 0.00 0.00 2.43
33 34 1.623973 GCCGTTCCTCCTCGAAAACG 61.624 60.000 8.72 8.72 42.95 3.60
34 35 0.038892 CCGTTCCTCCTCGAAAACGA 60.039 55.000 14.35 0.00 45.36 3.85
35 36 1.603678 CCGTTCCTCCTCGAAAACGAA 60.604 52.381 14.35 0.94 45.36 3.85
36 37 2.129607 CGTTCCTCCTCGAAAACGAAA 58.870 47.619 9.64 0.00 45.36 3.46
37 38 2.540931 CGTTCCTCCTCGAAAACGAAAA 59.459 45.455 9.64 0.00 45.36 2.29
38 39 3.001533 CGTTCCTCCTCGAAAACGAAAAA 59.998 43.478 9.64 0.00 45.36 1.94
75 76 1.792006 TTTTTCCTTCCGCGAGAGTC 58.208 50.000 8.23 0.00 0.00 3.36
76 77 0.677288 TTTTCCTTCCGCGAGAGTCA 59.323 50.000 8.23 0.00 0.00 3.41
77 78 0.038526 TTTCCTTCCGCGAGAGTCAC 60.039 55.000 8.23 0.00 0.00 3.67
78 79 2.196382 TTCCTTCCGCGAGAGTCACG 62.196 60.000 8.23 5.53 0.00 4.35
83 84 4.478195 CGCGAGAGTCACGGATTT 57.522 55.556 11.95 0.00 0.00 2.17
84 85 1.991430 CGCGAGAGTCACGGATTTG 59.009 57.895 11.95 0.00 0.00 2.32
85 86 1.710339 GCGAGAGTCACGGATTTGC 59.290 57.895 11.95 0.00 0.00 3.68
86 87 0.737715 GCGAGAGTCACGGATTTGCT 60.738 55.000 11.95 0.00 0.00 3.91
87 88 1.714794 CGAGAGTCACGGATTTGCTT 58.285 50.000 1.62 0.00 0.00 3.91
88 89 2.069273 CGAGAGTCACGGATTTGCTTT 58.931 47.619 1.62 0.00 0.00 3.51
89 90 2.092838 CGAGAGTCACGGATTTGCTTTC 59.907 50.000 1.62 0.00 0.00 2.62
90 91 2.069273 AGAGTCACGGATTTGCTTTCG 58.931 47.619 0.00 0.00 0.00 3.46
91 92 0.517316 AGTCACGGATTTGCTTTCGC 59.483 50.000 0.00 0.00 0.00 4.70
92 93 0.237235 GTCACGGATTTGCTTTCGCA 59.763 50.000 0.00 0.00 46.24 5.10
100 101 3.043713 TGCTTTCGCAGAGGCACG 61.044 61.111 0.00 0.00 42.25 5.34
101 102 3.793144 GCTTTCGCAGAGGCACGG 61.793 66.667 0.00 0.00 41.24 4.94
102 103 2.357517 CTTTCGCAGAGGCACGGT 60.358 61.111 0.00 0.00 41.24 4.83
103 104 1.961277 CTTTCGCAGAGGCACGGTT 60.961 57.895 0.00 0.00 41.24 4.44
104 105 2.175184 CTTTCGCAGAGGCACGGTTG 62.175 60.000 0.00 0.00 41.24 3.77
105 106 2.933878 TTTCGCAGAGGCACGGTTGT 62.934 55.000 0.00 0.00 41.24 3.32
118 119 3.045601 ACGGTTGTGATTCCTTGAGAG 57.954 47.619 0.00 0.00 0.00 3.20
119 120 2.289694 ACGGTTGTGATTCCTTGAGAGG 60.290 50.000 0.00 0.00 45.02 3.69
120 121 2.087646 GGTTGTGATTCCTTGAGAGGC 58.912 52.381 0.00 0.00 43.21 4.70
121 122 2.553028 GGTTGTGATTCCTTGAGAGGCA 60.553 50.000 0.00 0.00 43.21 4.75
122 123 2.479566 TGTGATTCCTTGAGAGGCAC 57.520 50.000 0.00 0.00 43.21 5.01
123 124 1.338105 TGTGATTCCTTGAGAGGCACG 60.338 52.381 0.00 0.00 43.21 5.34
124 125 1.066858 GTGATTCCTTGAGAGGCACGA 60.067 52.381 0.00 0.00 43.21 4.35
125 126 1.205655 TGATTCCTTGAGAGGCACGAG 59.794 52.381 0.00 0.00 43.21 4.18
126 127 0.107945 ATTCCTTGAGAGGCACGAGC 60.108 55.000 0.00 0.00 43.21 5.03
127 128 2.492449 TTCCTTGAGAGGCACGAGCG 62.492 60.000 0.00 0.00 43.21 5.03
128 129 2.259818 CTTGAGAGGCACGAGCGT 59.740 61.111 0.00 0.00 43.41 5.07
137 138 3.159984 CACGAGCGTGCCTCTTTC 58.840 61.111 10.25 0.00 39.39 2.62
138 139 2.430921 ACGAGCGTGCCTCTTTCG 60.431 61.111 0.00 0.00 38.49 3.46
139 140 2.126463 CGAGCGTGCCTCTTTCGA 60.126 61.111 0.00 0.00 38.49 3.71
140 141 1.733041 CGAGCGTGCCTCTTTCGAA 60.733 57.895 0.00 0.00 38.49 3.71
141 142 1.282248 CGAGCGTGCCTCTTTCGAAA 61.282 55.000 10.71 10.71 38.49 3.46
142 143 0.865769 GAGCGTGCCTCTTTCGAAAA 59.134 50.000 12.41 2.66 37.60 2.29
143 144 0.868406 AGCGTGCCTCTTTCGAAAAG 59.132 50.000 12.41 11.57 0.00 2.27
144 145 0.110192 GCGTGCCTCTTTCGAAAAGG 60.110 55.000 23.60 23.60 0.00 3.11
145 146 1.508632 CGTGCCTCTTTCGAAAAGGA 58.491 50.000 28.33 17.09 31.44 3.36
146 147 1.871039 CGTGCCTCTTTCGAAAAGGAA 59.129 47.619 28.33 21.29 31.44 3.36
147 148 2.289547 CGTGCCTCTTTCGAAAAGGAAA 59.710 45.455 28.33 18.60 34.87 3.13
148 149 3.242936 CGTGCCTCTTTCGAAAAGGAAAA 60.243 43.478 28.33 16.98 35.64 2.29
149 150 4.678622 GTGCCTCTTTCGAAAAGGAAAAA 58.321 39.130 28.33 15.37 35.64 1.94
165 166 3.184736 AAAAACACGTGCTCCCAGT 57.815 47.368 17.22 0.00 0.00 4.00
166 167 1.470051 AAAAACACGTGCTCCCAGTT 58.530 45.000 17.22 0.00 0.00 3.16
167 168 1.021968 AAAACACGTGCTCCCAGTTC 58.978 50.000 17.22 0.00 0.00 3.01
168 169 1.157870 AAACACGTGCTCCCAGTTCG 61.158 55.000 17.22 0.00 0.00 3.95
169 170 2.738521 CACGTGCTCCCAGTTCGG 60.739 66.667 0.82 0.00 0.00 4.30
170 171 3.231736 ACGTGCTCCCAGTTCGGT 61.232 61.111 0.00 0.00 0.00 4.69
171 172 2.030562 CGTGCTCCCAGTTCGGTT 59.969 61.111 0.00 0.00 0.00 4.44
172 173 1.597027 CGTGCTCCCAGTTCGGTTT 60.597 57.895 0.00 0.00 0.00 3.27
173 174 1.164041 CGTGCTCCCAGTTCGGTTTT 61.164 55.000 0.00 0.00 0.00 2.43
174 175 1.029681 GTGCTCCCAGTTCGGTTTTT 58.970 50.000 0.00 0.00 0.00 1.94
219 220 4.886247 AAAAGTTCGTCAAAACCGATCA 57.114 36.364 0.00 0.00 33.81 2.92
220 221 4.886247 AAAGTTCGTCAAAACCGATCAA 57.114 36.364 0.00 0.00 33.81 2.57
221 222 3.872560 AGTTCGTCAAAACCGATCAAC 57.127 42.857 0.00 0.00 33.81 3.18
222 223 3.199677 AGTTCGTCAAAACCGATCAACA 58.800 40.909 0.00 0.00 33.81 3.33
223 224 3.813166 AGTTCGTCAAAACCGATCAACAT 59.187 39.130 0.00 0.00 33.81 2.71
224 225 3.804518 TCGTCAAAACCGATCAACATG 57.195 42.857 0.00 0.00 0.00 3.21
225 226 2.482336 TCGTCAAAACCGATCAACATGG 59.518 45.455 0.00 0.00 0.00 3.66
226 227 2.482336 CGTCAAAACCGATCAACATGGA 59.518 45.455 0.00 0.00 0.00 3.41
227 228 3.126858 CGTCAAAACCGATCAACATGGAT 59.873 43.478 0.00 0.00 0.00 3.41
228 229 4.662145 GTCAAAACCGATCAACATGGATC 58.338 43.478 0.00 0.00 40.22 3.36
229 230 4.396166 GTCAAAACCGATCAACATGGATCT 59.604 41.667 9.42 0.00 41.21 2.75
230 231 5.584649 GTCAAAACCGATCAACATGGATCTA 59.415 40.000 9.42 0.00 41.21 1.98
231 232 5.817296 TCAAAACCGATCAACATGGATCTAG 59.183 40.000 9.42 4.67 41.21 2.43
232 233 5.359194 AAACCGATCAACATGGATCTAGT 57.641 39.130 9.42 5.15 41.21 2.57
233 234 5.359194 AACCGATCAACATGGATCTAGTT 57.641 39.130 9.42 9.44 41.21 2.24
234 235 5.359194 ACCGATCAACATGGATCTAGTTT 57.641 39.130 9.42 0.00 41.21 2.66
235 236 5.745227 ACCGATCAACATGGATCTAGTTTT 58.255 37.500 9.42 0.00 41.21 2.43
236 237 5.586243 ACCGATCAACATGGATCTAGTTTTG 59.414 40.000 9.42 0.00 41.21 2.44
237 238 5.817296 CCGATCAACATGGATCTAGTTTTGA 59.183 40.000 9.42 0.00 41.21 2.69
238 239 6.316140 CCGATCAACATGGATCTAGTTTTGAA 59.684 38.462 9.42 0.00 41.21 2.69
239 240 7.148255 CCGATCAACATGGATCTAGTTTTGAAA 60.148 37.037 9.42 0.00 41.21 2.69
240 241 8.236586 CGATCAACATGGATCTAGTTTTGAAAA 58.763 33.333 9.42 0.00 41.21 2.29
243 244 9.300681 TCAACATGGATCTAGTTTTGAAAATCT 57.699 29.630 0.00 0.00 0.00 2.40
244 245 9.565213 CAACATGGATCTAGTTTTGAAAATCTC 57.435 33.333 0.00 0.00 0.00 2.75
245 246 7.978982 ACATGGATCTAGTTTTGAAAATCTCG 58.021 34.615 0.00 0.00 0.00 4.04
246 247 7.824289 ACATGGATCTAGTTTTGAAAATCTCGA 59.176 33.333 0.00 0.00 0.00 4.04
247 248 7.596749 TGGATCTAGTTTTGAAAATCTCGAC 57.403 36.000 0.00 0.00 0.00 4.20
248 249 6.310467 TGGATCTAGTTTTGAAAATCTCGACG 59.690 38.462 0.00 0.00 0.00 5.12
249 250 5.511088 TCTAGTTTTGAAAATCTCGACGC 57.489 39.130 0.00 0.00 0.00 5.19
250 251 3.169207 AGTTTTGAAAATCTCGACGCG 57.831 42.857 3.53 3.53 0.00 6.01
251 252 2.798283 AGTTTTGAAAATCTCGACGCGA 59.202 40.909 15.93 0.00 0.00 5.87
260 261 3.280211 TCGACGCGAGGAATCCAA 58.720 55.556 15.93 0.00 0.00 3.53
261 262 1.153901 TCGACGCGAGGAATCCAAC 60.154 57.895 15.93 0.00 0.00 3.77
262 263 2.505498 CGACGCGAGGAATCCAACG 61.505 63.158 15.93 12.84 0.00 4.10
263 264 2.125673 ACGCGAGGAATCCAACGG 60.126 61.111 15.93 11.24 0.00 4.44
264 265 2.125673 CGCGAGGAATCCAACGGT 60.126 61.111 17.17 0.00 0.00 4.83
265 266 2.452813 CGCGAGGAATCCAACGGTG 61.453 63.158 17.17 0.00 0.00 4.94
286 287 3.203161 GAAGCGGTTCCTGATTCAAAC 57.797 47.619 16.42 0.00 0.00 2.93
287 288 2.270352 AGCGGTTCCTGATTCAAACA 57.730 45.000 4.17 0.00 0.00 2.83
288 289 1.880027 AGCGGTTCCTGATTCAAACAC 59.120 47.619 4.17 0.00 0.00 3.32
289 290 1.606668 GCGGTTCCTGATTCAAACACA 59.393 47.619 4.17 0.00 0.00 3.72
290 291 2.604614 GCGGTTCCTGATTCAAACACAC 60.605 50.000 4.17 0.00 0.00 3.82
291 292 2.878406 CGGTTCCTGATTCAAACACACT 59.122 45.455 4.17 0.00 0.00 3.55
292 293 3.303990 CGGTTCCTGATTCAAACACACTG 60.304 47.826 4.17 0.00 0.00 3.66
293 294 3.632145 GGTTCCTGATTCAAACACACTGT 59.368 43.478 4.17 0.00 0.00 3.55
294 295 4.097892 GGTTCCTGATTCAAACACACTGTT 59.902 41.667 4.17 0.00 43.41 3.16
325 326 9.634163 AGATAAACCGTTTTGAATAAATGAACC 57.366 29.630 0.96 0.00 0.00 3.62
326 327 9.634163 GATAAACCGTTTTGAATAAATGAACCT 57.366 29.630 0.96 0.00 0.00 3.50
328 329 8.806177 AAACCGTTTTGAATAAATGAACCTAC 57.194 30.769 0.00 0.00 0.00 3.18
329 330 6.604930 ACCGTTTTGAATAAATGAACCTACG 58.395 36.000 0.00 0.00 0.00 3.51
330 331 6.427547 ACCGTTTTGAATAAATGAACCTACGA 59.572 34.615 0.00 0.00 0.00 3.43
331 332 7.041235 ACCGTTTTGAATAAATGAACCTACGAA 60.041 33.333 0.00 0.00 0.00 3.85
332 333 7.804129 CCGTTTTGAATAAATGAACCTACGAAA 59.196 33.333 0.00 0.00 0.00 3.46
333 334 9.171701 CGTTTTGAATAAATGAACCTACGAAAA 57.828 29.630 0.00 0.00 0.00 2.29
336 337 9.685828 TTTGAATAAATGAACCTACGAAAAAGG 57.314 29.630 0.00 0.00 40.20 3.11
337 338 8.624367 TGAATAAATGAACCTACGAAAAAGGA 57.376 30.769 0.00 0.00 37.57 3.36
338 339 9.069082 TGAATAAATGAACCTACGAAAAAGGAA 57.931 29.630 0.00 0.00 37.57 3.36
339 340 9.902196 GAATAAATGAACCTACGAAAAAGGAAA 57.098 29.630 0.00 0.00 37.57 3.13
342 343 7.997107 AATGAACCTACGAAAAAGGAAAAAC 57.003 32.000 0.00 0.00 37.57 2.43
343 344 6.762702 TGAACCTACGAAAAAGGAAAAACT 57.237 33.333 0.00 0.00 37.57 2.66
344 345 7.160547 TGAACCTACGAAAAAGGAAAAACTT 57.839 32.000 0.00 0.00 37.57 2.66
345 346 7.252708 TGAACCTACGAAAAAGGAAAAACTTC 58.747 34.615 0.00 0.00 37.57 3.01
346 347 6.140303 ACCTACGAAAAAGGAAAAACTTCC 57.860 37.500 0.00 0.00 41.42 3.46
353 354 3.179433 GGAAAAACTTCCTGTGCGC 57.821 52.632 0.00 0.00 38.09 6.09
354 355 0.318699 GGAAAAACTTCCTGTGCGCC 60.319 55.000 4.18 0.00 38.09 6.53
355 356 0.383949 GAAAAACTTCCTGTGCGCCA 59.616 50.000 4.18 0.90 0.00 5.69
356 357 0.102300 AAAAACTTCCTGTGCGCCAC 59.898 50.000 4.18 3.72 34.56 5.01
357 358 0.751643 AAAACTTCCTGTGCGCCACT 60.752 50.000 4.18 0.00 35.11 4.00
358 359 0.751643 AAACTTCCTGTGCGCCACTT 60.752 50.000 4.18 0.00 35.11 3.16
359 360 0.107831 AACTTCCTGTGCGCCACTTA 59.892 50.000 4.18 0.00 35.11 2.24
360 361 0.324943 ACTTCCTGTGCGCCACTTAT 59.675 50.000 4.18 0.00 35.11 1.73
361 362 1.271379 ACTTCCTGTGCGCCACTTATT 60.271 47.619 4.18 0.00 35.11 1.40
362 363 1.131126 CTTCCTGTGCGCCACTTATTG 59.869 52.381 4.18 0.00 35.11 1.90
363 364 1.137404 CCTGTGCGCCACTTATTGC 59.863 57.895 4.18 0.00 35.11 3.56
364 365 1.585267 CCTGTGCGCCACTTATTGCA 61.585 55.000 4.18 0.00 35.11 4.08
365 366 0.240678 CTGTGCGCCACTTATTGCAA 59.759 50.000 4.18 0.00 39.34 4.08
366 367 0.887247 TGTGCGCCACTTATTGCAAT 59.113 45.000 17.56 17.56 39.34 3.56
367 368 1.135431 TGTGCGCCACTTATTGCAATC 60.135 47.619 16.86 0.00 39.34 2.67
368 369 1.133025 GTGCGCCACTTATTGCAATCT 59.867 47.619 16.86 0.00 39.34 2.40
369 370 1.132834 TGCGCCACTTATTGCAATCTG 59.867 47.619 16.86 12.24 33.80 2.90
370 371 1.401552 GCGCCACTTATTGCAATCTGA 59.598 47.619 16.86 2.55 0.00 3.27
371 372 2.033801 GCGCCACTTATTGCAATCTGAT 59.966 45.455 16.86 0.00 0.00 2.90
372 373 3.624900 CGCCACTTATTGCAATCTGATG 58.375 45.455 16.86 10.17 0.00 3.07
373 374 3.378339 GCCACTTATTGCAATCTGATGC 58.622 45.455 16.86 10.95 46.58 3.91
381 382 2.838386 GCAATCTGATGCGTTGATGT 57.162 45.000 0.00 0.00 36.45 3.06
382 383 2.447250 GCAATCTGATGCGTTGATGTG 58.553 47.619 0.00 0.00 36.45 3.21
383 384 2.096335 GCAATCTGATGCGTTGATGTGA 59.904 45.455 0.00 0.00 36.45 3.58
384 385 3.242969 GCAATCTGATGCGTTGATGTGAT 60.243 43.478 0.00 0.00 36.45 3.06
385 386 4.524749 CAATCTGATGCGTTGATGTGATC 58.475 43.478 0.00 0.00 0.00 2.92
386 387 3.531934 TCTGATGCGTTGATGTGATCT 57.468 42.857 0.00 0.00 0.00 2.75
387 388 3.865446 TCTGATGCGTTGATGTGATCTT 58.135 40.909 0.00 0.00 0.00 2.40
388 389 4.256110 TCTGATGCGTTGATGTGATCTTT 58.744 39.130 0.00 0.00 0.00 2.52
389 390 4.093850 TCTGATGCGTTGATGTGATCTTTG 59.906 41.667 0.00 0.00 0.00 2.77
390 391 2.617250 TGCGTTGATGTGATCTTTGC 57.383 45.000 0.00 0.00 0.00 3.68
391 392 1.878734 TGCGTTGATGTGATCTTTGCA 59.121 42.857 0.00 0.00 0.00 4.08
392 393 2.292845 TGCGTTGATGTGATCTTTGCAA 59.707 40.909 0.00 0.00 31.11 4.08
393 394 2.658325 GCGTTGATGTGATCTTTGCAAC 59.342 45.455 0.00 0.00 34.04 4.17
395 396 4.145876 GTTGATGTGATCTTTGCAACGA 57.854 40.909 8.20 8.20 0.00 3.85
396 397 4.153986 GTTGATGTGATCTTTGCAACGAG 58.846 43.478 11.57 1.70 0.00 4.18
397 398 3.402110 TGATGTGATCTTTGCAACGAGT 58.598 40.909 11.57 0.34 0.00 4.18
398 399 4.565022 TGATGTGATCTTTGCAACGAGTA 58.435 39.130 11.57 0.27 0.00 2.59
399 400 4.388773 TGATGTGATCTTTGCAACGAGTAC 59.611 41.667 11.57 12.15 0.00 2.73
400 401 3.990092 TGTGATCTTTGCAACGAGTACT 58.010 40.909 11.57 0.00 0.00 2.73
401 402 4.377021 TGTGATCTTTGCAACGAGTACTT 58.623 39.130 11.57 0.00 0.00 2.24
402 403 4.447724 TGTGATCTTTGCAACGAGTACTTC 59.552 41.667 11.57 4.44 0.00 3.01
403 404 4.686554 GTGATCTTTGCAACGAGTACTTCT 59.313 41.667 11.57 0.00 0.00 2.85
404 405 4.923871 TGATCTTTGCAACGAGTACTTCTC 59.076 41.667 11.57 3.11 39.62 2.87
405 406 4.316205 TCTTTGCAACGAGTACTTCTCA 57.684 40.909 0.00 0.00 42.88 3.27
406 407 4.299155 TCTTTGCAACGAGTACTTCTCAG 58.701 43.478 0.00 0.00 42.88 3.35
407 408 3.728076 TTGCAACGAGTACTTCTCAGT 57.272 42.857 0.00 0.00 42.88 3.41
408 409 3.728076 TGCAACGAGTACTTCTCAGTT 57.272 42.857 0.00 0.00 42.88 3.16
409 410 4.841443 TGCAACGAGTACTTCTCAGTTA 57.159 40.909 0.00 0.00 42.88 2.24
410 411 4.795268 TGCAACGAGTACTTCTCAGTTAG 58.205 43.478 0.00 0.00 42.88 2.34
411 412 4.277672 TGCAACGAGTACTTCTCAGTTAGT 59.722 41.667 0.00 0.00 42.88 2.24
412 413 4.617645 GCAACGAGTACTTCTCAGTTAGTG 59.382 45.833 0.00 0.00 42.88 2.74
413 414 5.562307 GCAACGAGTACTTCTCAGTTAGTGA 60.562 44.000 0.00 0.00 42.88 3.41
414 415 6.613233 CAACGAGTACTTCTCAGTTAGTGAT 58.387 40.000 0.00 0.00 42.88 3.06
415 416 6.821031 ACGAGTACTTCTCAGTTAGTGATT 57.179 37.500 0.00 0.00 42.88 2.57
416 417 7.216973 ACGAGTACTTCTCAGTTAGTGATTT 57.783 36.000 0.00 0.00 42.88 2.17
417 418 7.659186 ACGAGTACTTCTCAGTTAGTGATTTT 58.341 34.615 0.00 0.00 42.88 1.82
418 419 8.790718 ACGAGTACTTCTCAGTTAGTGATTTTA 58.209 33.333 0.00 0.00 42.88 1.52
419 420 9.063739 CGAGTACTTCTCAGTTAGTGATTTTAC 57.936 37.037 0.00 0.00 42.88 2.01
420 421 8.967552 AGTACTTCTCAGTTAGTGATTTTACG 57.032 34.615 0.00 0.00 33.51 3.18
421 422 8.574737 AGTACTTCTCAGTTAGTGATTTTACGT 58.425 33.333 0.00 0.00 33.51 3.57
422 423 9.831737 GTACTTCTCAGTTAGTGATTTTACGTA 57.168 33.333 0.00 0.00 33.51 3.57
424 425 9.408069 ACTTCTCAGTTAGTGATTTTACGTAAG 57.592 33.333 8.23 0.00 37.85 2.34
425 426 8.752766 TTCTCAGTTAGTGATTTTACGTAAGG 57.247 34.615 8.23 0.00 36.47 2.69
426 427 7.889469 TCTCAGTTAGTGATTTTACGTAAGGT 58.111 34.615 8.23 1.20 36.47 3.50
427 428 7.811236 TCTCAGTTAGTGATTTTACGTAAGGTG 59.189 37.037 8.23 0.00 36.47 4.00
428 429 6.869913 TCAGTTAGTGATTTTACGTAAGGTGG 59.130 38.462 8.23 0.00 46.39 4.61
429 430 5.640783 AGTTAGTGATTTTACGTAAGGTGGC 59.359 40.000 8.23 1.26 46.39 5.01
430 431 2.997986 AGTGATTTTACGTAAGGTGGCG 59.002 45.455 8.23 0.00 46.39 5.69
431 432 2.738314 GTGATTTTACGTAAGGTGGCGT 59.262 45.455 8.23 0.00 46.39 5.68
432 433 3.187022 GTGATTTTACGTAAGGTGGCGTT 59.813 43.478 8.23 0.00 46.39 4.84
433 434 3.814283 TGATTTTACGTAAGGTGGCGTTT 59.186 39.130 8.23 0.00 46.39 3.60
434 435 4.993584 TGATTTTACGTAAGGTGGCGTTTA 59.006 37.500 8.23 0.00 46.39 2.01
435 436 4.988708 TTTTACGTAAGGTGGCGTTTAG 57.011 40.909 8.23 0.00 46.39 1.85
436 437 2.652941 TACGTAAGGTGGCGTTTAGG 57.347 50.000 0.00 0.00 46.39 2.69
437 438 0.968405 ACGTAAGGTGGCGTTTAGGA 59.032 50.000 0.00 0.00 46.39 2.94
438 439 1.344114 ACGTAAGGTGGCGTTTAGGAA 59.656 47.619 0.00 0.00 46.39 3.36
439 440 2.027837 ACGTAAGGTGGCGTTTAGGAAT 60.028 45.455 0.00 0.00 46.39 3.01
440 441 2.350498 CGTAAGGTGGCGTTTAGGAATG 59.650 50.000 0.00 0.00 0.00 2.67
441 442 1.834188 AAGGTGGCGTTTAGGAATGG 58.166 50.000 0.00 0.00 0.00 3.16
442 443 0.679960 AGGTGGCGTTTAGGAATGGC 60.680 55.000 0.00 0.00 45.00 4.40
443 444 1.663379 GGTGGCGTTTAGGAATGGCC 61.663 60.000 0.00 0.00 44.36 5.36
444 445 1.747367 TGGCGTTTAGGAATGGCCG 60.747 57.895 0.00 0.00 44.36 6.13
455 456 2.689983 AGGAATGGCCGAAAGCAAATAG 59.310 45.455 0.00 0.00 46.50 1.73
456 457 2.427095 GGAATGGCCGAAAGCAAATAGT 59.573 45.455 0.00 0.00 46.50 2.12
457 458 3.630312 GGAATGGCCGAAAGCAAATAGTA 59.370 43.478 0.00 0.00 46.50 1.82
458 459 4.497507 GGAATGGCCGAAAGCAAATAGTAC 60.498 45.833 0.00 0.00 46.50 2.73
459 460 3.060736 TGGCCGAAAGCAAATAGTACA 57.939 42.857 0.00 0.00 46.50 2.90
493 494 0.754957 AGTCTGCATCCTCTCTCCCG 60.755 60.000 0.00 0.00 0.00 5.14
554 555 2.380365 AGCTGAATGGGCTGAGACA 58.620 52.632 0.00 0.00 38.73 3.41
610 618 4.140599 CGAGAAGCGAGGCTGCCT 62.141 66.667 23.64 23.64 44.57 4.75
619 627 1.369625 CGAGGCTGCCTAACGAAAAT 58.630 50.000 23.44 0.00 31.76 1.82
795 806 3.030652 CTGGGTTTGTGCCGTGAC 58.969 61.111 0.00 0.00 0.00 3.67
874 894 2.633509 CCTGAAGGCCTGCTGTTGC 61.634 63.158 13.40 0.00 40.20 4.17
1104 1135 0.180171 CGCACCTGGGGAACATCATA 59.820 55.000 0.00 0.00 0.00 2.15
1148 1180 2.057922 TGCTATCTCCTCCCCCAATTC 58.942 52.381 0.00 0.00 0.00 2.17
1221 1257 0.396435 TTTGGTCGTGATCTGCAGGT 59.604 50.000 15.13 6.50 34.14 4.00
1906 2339 0.546747 TCGTGGAGGGGAAATGTCCT 60.547 55.000 0.82 0.00 44.28 3.85
1915 2348 1.201424 GGAAATGTCCTACCGAGGGT 58.799 55.000 0.00 0.00 43.94 4.34
1954 2387 5.337009 GGCAAGAGGTGATCAATGTGAAAAT 60.337 40.000 0.00 0.00 0.00 1.82
2071 2504 5.989777 GCGTACCATTATGATTTACCTGAGT 59.010 40.000 0.00 0.00 0.00 3.41
2651 3088 4.298332 AGCTTGTTTTGGCACGAATTTAG 58.702 39.130 0.00 0.00 0.00 1.85
2652 3089 4.048504 GCTTGTTTTGGCACGAATTTAGT 58.951 39.130 0.00 0.00 0.00 2.24
2653 3090 5.009210 AGCTTGTTTTGGCACGAATTTAGTA 59.991 36.000 0.00 0.00 0.00 1.82
2654 3091 5.116528 GCTTGTTTTGGCACGAATTTAGTAC 59.883 40.000 0.00 0.00 0.00 2.73
2655 3092 6.380095 TTGTTTTGGCACGAATTTAGTACT 57.620 33.333 0.00 0.00 0.00 2.73
2656 3093 5.992729 TGTTTTGGCACGAATTTAGTACTC 58.007 37.500 0.00 0.00 0.00 2.59
2657 3094 5.049267 TGTTTTGGCACGAATTTAGTACTCC 60.049 40.000 0.00 0.00 0.00 3.85
2658 3095 3.255969 TGGCACGAATTTAGTACTCCC 57.744 47.619 0.00 0.00 0.00 4.30
2659 3096 2.835764 TGGCACGAATTTAGTACTCCCT 59.164 45.455 0.00 0.00 0.00 4.20
2660 3097 3.118884 TGGCACGAATTTAGTACTCCCTC 60.119 47.826 0.00 0.00 0.00 4.30
2661 3098 3.132467 GGCACGAATTTAGTACTCCCTCT 59.868 47.826 0.00 0.00 0.00 3.69
2662 3099 4.113354 GCACGAATTTAGTACTCCCTCTG 58.887 47.826 0.00 0.00 0.00 3.35
2663 3100 4.381718 GCACGAATTTAGTACTCCCTCTGT 60.382 45.833 0.00 0.00 0.00 3.41
2664 3101 5.341617 CACGAATTTAGTACTCCCTCTGTC 58.658 45.833 0.00 0.00 0.00 3.51
2665 3102 4.401837 ACGAATTTAGTACTCCCTCTGTCC 59.598 45.833 0.00 0.00 0.00 4.02
2666 3103 4.202131 CGAATTTAGTACTCCCTCTGTCCC 60.202 50.000 0.00 0.00 0.00 4.46
2667 3104 3.839323 TTTAGTACTCCCTCTGTCCCA 57.161 47.619 0.00 0.00 0.00 4.37
2668 3105 4.348020 TTTAGTACTCCCTCTGTCCCAT 57.652 45.455 0.00 0.00 0.00 4.00
2669 3106 5.476950 TTTAGTACTCCCTCTGTCCCATA 57.523 43.478 0.00 0.00 0.00 2.74
2670 3107 5.476950 TTAGTACTCCCTCTGTCCCATAA 57.523 43.478 0.00 0.00 0.00 1.90
2671 3108 4.561254 AGTACTCCCTCTGTCCCATAAT 57.439 45.455 0.00 0.00 0.00 1.28
2672 3109 5.681494 AGTACTCCCTCTGTCCCATAATA 57.319 43.478 0.00 0.00 0.00 0.98
2673 3110 6.234404 AGTACTCCCTCTGTCCCATAATAT 57.766 41.667 0.00 0.00 0.00 1.28
2674 3111 7.358255 AGTACTCCCTCTGTCCCATAATATA 57.642 40.000 0.00 0.00 0.00 0.86
2675 3112 7.776745 AGTACTCCCTCTGTCCCATAATATAA 58.223 38.462 0.00 0.00 0.00 0.98
2676 3113 7.896496 AGTACTCCCTCTGTCCCATAATATAAG 59.104 40.741 0.00 0.00 0.00 1.73
2677 3114 6.875469 ACTCCCTCTGTCCCATAATATAAGA 58.125 40.000 0.00 0.00 0.00 2.10
2678 3115 6.957020 ACTCCCTCTGTCCCATAATATAAGAG 59.043 42.308 0.00 0.00 0.00 2.85
2679 3116 5.721960 TCCCTCTGTCCCATAATATAAGAGC 59.278 44.000 0.00 0.00 0.00 4.09
2680 3117 5.394663 CCCTCTGTCCCATAATATAAGAGCG 60.395 48.000 0.00 0.00 0.00 5.03
2681 3118 5.186021 CCTCTGTCCCATAATATAAGAGCGT 59.814 44.000 0.00 0.00 0.00 5.07
2682 3119 6.295349 CCTCTGTCCCATAATATAAGAGCGTT 60.295 42.308 0.00 0.00 0.00 4.84
2683 3120 7.062749 TCTGTCCCATAATATAAGAGCGTTT 57.937 36.000 0.00 0.00 0.00 3.60
2684 3121 7.506114 TCTGTCCCATAATATAAGAGCGTTTT 58.494 34.615 0.00 0.00 0.00 2.43
2685 3122 7.990886 TCTGTCCCATAATATAAGAGCGTTTTT 59.009 33.333 0.00 0.00 0.00 1.94
2709 3146 8.456904 TTTACACTAGTGTAGTATCAAAAGCG 57.543 34.615 29.34 0.48 45.57 4.68
2710 3147 5.408356 ACACTAGTGTAGTATCAAAAGCGG 58.592 41.667 26.91 0.00 42.90 5.52
2711 3148 5.047519 ACACTAGTGTAGTATCAAAAGCGGT 60.048 40.000 26.91 0.00 42.90 5.68
2712 3149 5.515626 CACTAGTGTAGTATCAAAAGCGGTC 59.484 44.000 15.06 0.00 37.23 4.79
2713 3150 4.803098 AGTGTAGTATCAAAAGCGGTCT 57.197 40.909 0.00 0.00 0.00 3.85
2714 3151 5.148651 AGTGTAGTATCAAAAGCGGTCTT 57.851 39.130 0.00 0.00 0.00 3.01
2715 3152 6.276832 AGTGTAGTATCAAAAGCGGTCTTA 57.723 37.500 0.00 0.00 31.02 2.10
2716 3153 6.875076 AGTGTAGTATCAAAAGCGGTCTTAT 58.125 36.000 0.00 0.00 31.02 1.73
2717 3154 8.004087 AGTGTAGTATCAAAAGCGGTCTTATA 57.996 34.615 0.00 0.00 31.02 0.98
2718 3155 8.639761 AGTGTAGTATCAAAAGCGGTCTTATAT 58.360 33.333 0.00 0.00 31.02 0.86
2719 3156 9.257651 GTGTAGTATCAAAAGCGGTCTTATATT 57.742 33.333 0.00 0.00 31.02 1.28
2723 3160 9.436957 AGTATCAAAAGCGGTCTTATATTATGG 57.563 33.333 0.00 0.00 31.02 2.74
2724 3161 7.687941 ATCAAAAGCGGTCTTATATTATGGG 57.312 36.000 0.00 0.00 31.02 4.00
2725 3162 6.833041 TCAAAAGCGGTCTTATATTATGGGA 58.167 36.000 0.00 0.00 31.02 4.37
2726 3163 6.708949 TCAAAAGCGGTCTTATATTATGGGAC 59.291 38.462 0.00 0.00 31.02 4.46
2727 3164 6.182507 AAAGCGGTCTTATATTATGGGACA 57.817 37.500 0.00 0.00 35.33 4.02
2728 3165 6.231211 AAAGCGGTCTTATATTATGGGACAG 58.769 40.000 0.00 8.64 34.55 3.51
2729 3166 6.042781 AAAGCGGTCTTATATTATGGGACAGA 59.957 38.462 11.75 0.00 34.55 3.41
2730 3167 7.741108 AAAGCGGTCTTATATTATGGGACAGAG 60.741 40.741 11.75 5.98 34.55 3.35
2842 3315 6.439375 TGAACTAGAGTTACCAAAGAGGCATA 59.561 38.462 0.00 0.00 38.71 3.14
2917 3391 5.237779 CGCGACCAAATAATTTGTAGGGTAT 59.762 40.000 0.00 0.00 38.98 2.73
2998 3473 4.058817 GTTCAACTGGTAAGTCAGGACAG 58.941 47.826 1.84 0.00 38.98 3.51
3049 3527 6.633500 TCACCACAAAATAGGACTGAAAAG 57.367 37.500 0.00 0.00 0.00 2.27
3058 3539 7.951530 AAATAGGACTGAAAAGTGCAAATTG 57.048 32.000 0.00 0.00 32.32 2.32
3167 3675 4.829064 AGTTAAATCACGCAAAAGCTGA 57.171 36.364 0.00 0.00 0.00 4.26
3200 3712 5.897377 ACATATTTAAGGGTCAGTTGCAC 57.103 39.130 0.00 0.00 0.00 4.57
3445 3957 4.453480 TTTTCAGGTCATGTTCCCTTCT 57.547 40.909 0.00 0.00 0.00 2.85
3606 4119 7.920151 TCATTCATATTTGGTTAATGCTTTCCG 59.080 33.333 0.00 0.00 0.00 4.30
3607 4120 6.767524 TCATATTTGGTTAATGCTTTCCGT 57.232 33.333 0.00 0.00 0.00 4.69
3733 6470 0.815734 CAATTGCAGAGGCTCTTGGG 59.184 55.000 15.90 5.01 41.91 4.12
3794 6538 2.680965 CCCGGTACTTGGCCCATT 59.319 61.111 0.00 0.00 0.00 3.16
3860 6604 4.212214 GCAGAAGTAGTTGACACCTTTCTG 59.788 45.833 9.10 9.10 0.00 3.02
3874 6619 5.123227 CACCTTTCTGAACCTCAACACTTA 58.877 41.667 0.00 0.00 0.00 2.24
3875 6620 5.007724 CACCTTTCTGAACCTCAACACTTAC 59.992 44.000 0.00 0.00 0.00 2.34
3893 6638 0.185175 ACCTTTCTTTTCCGGTGCCT 59.815 50.000 0.00 0.00 0.00 4.75
4045 6956 8.155510 TCATGAAATTGGATGAATGGTTTGAAA 58.844 29.630 0.00 0.00 0.00 2.69
4068 6987 1.121378 TCGGGTTATGCCGTTATGGA 58.879 50.000 0.00 0.00 42.00 3.41
4078 7004 7.390718 GGTTATGCCGTTATGGAATCTCTTATT 59.609 37.037 0.00 0.00 42.00 1.40
4092 7018 8.090831 GGAATCTCTTATTCTTTTTGTTTGGCT 58.909 33.333 0.00 0.00 0.00 4.75
4148 7078 2.543848 TGATCGAGACACTGTTTTGCAC 59.456 45.455 0.00 0.00 0.00 4.57
4180 7112 9.667107 TGATTCAAATTACTCCGAAGTAGATTT 57.333 29.630 0.00 0.00 39.14 2.17
4615 7547 8.630917 TGCCATCTAACTGTCTAGAAGTATTAC 58.369 37.037 0.00 0.00 31.76 1.89
4640 7572 9.136323 ACCAGTTGATTTCTGTATTTTCTCTTT 57.864 29.630 0.00 0.00 0.00 2.52
4876 7820 7.068716 AGCAATGGAGAAGGTCATTAATTTACC 59.931 37.037 8.21 8.21 32.92 2.85
5088 8034 5.799213 TGTCTTGGTTTCCATTTGTGTTTT 58.201 33.333 0.00 0.00 31.53 2.43
5089 8035 6.234177 TGTCTTGGTTTCCATTTGTGTTTTT 58.766 32.000 0.00 0.00 31.53 1.94
5090 8036 7.386851 TGTCTTGGTTTCCATTTGTGTTTTTA 58.613 30.769 0.00 0.00 31.53 1.52
5474 8423 4.321230 GGACACAAAATAGGAAAGCCAGTG 60.321 45.833 0.00 0.00 36.29 3.66
5496 8445 4.288626 TGCCTCTATTTAAGGAACTGGTGT 59.711 41.667 0.00 0.00 40.86 4.16
5509 8458 4.923281 GGAACTGGTGTGTATTTGCATTTC 59.077 41.667 0.00 0.00 0.00 2.17
5681 8631 1.339291 AGTTGCTGAAAAGCTCAAGGC 59.661 47.619 0.00 0.00 42.19 4.35
5715 8665 7.923414 ATCTGGTACTTGTGAAATTCTTACC 57.077 36.000 0.00 0.00 0.00 2.85
5721 8671 8.621286 GGTACTTGTGAAATTCTTACCATATGG 58.379 37.037 20.68 20.68 42.17 2.74
5813 8805 6.601217 TGGCTCAGTTGTATGCAATTTGTATA 59.399 34.615 0.00 3.40 36.92 1.47
5852 8844 1.559831 GCATAGTGCGGCATTTTTCC 58.440 50.000 5.72 0.00 31.71 3.13
5908 8900 8.533657 TGCTGAACCAATTTCATAATTCAAGAT 58.466 29.630 0.00 0.00 43.54 2.40
6093 9089 6.973474 CCGATTCACTTTACGTAGAAGAGATT 59.027 38.462 18.27 13.57 0.00 2.40
6226 9222 1.836999 TATGCCGTGGTGGTCTTGCT 61.837 55.000 0.00 0.00 41.21 3.91
6247 9243 6.532826 TGCTTCCCTAATTTTGCAATTTCTT 58.467 32.000 0.00 0.00 34.29 2.52
6251 9247 9.657419 CTTCCCTAATTTTGCAATTTCTTGTAT 57.343 29.630 0.00 0.00 34.29 2.29
6373 9369 3.181448 GGACCACTCAAAGGTAAGGAACA 60.181 47.826 0.00 0.00 40.09 3.18
6471 9470 8.978539 GGAAACTGACATTTGAAATTTTAGGTC 58.021 33.333 0.00 0.00 0.00 3.85
6495 9494 1.361204 TGGTTGAGCCTCCAGAATCA 58.639 50.000 0.00 0.00 38.35 2.57
6561 9560 1.205893 CCTGAGGCTTCTCTTAACGCT 59.794 52.381 0.00 0.00 38.32 5.07
6636 9635 2.546368 TGTGGCGTGTTACAAAGATGTC 59.454 45.455 0.00 0.00 41.05 3.06
6650 9649 3.208747 AGATGTCCCGTTCACAACTTT 57.791 42.857 0.00 0.00 0.00 2.66
6703 9702 2.423446 GGGACATCCGCTAGGCAG 59.577 66.667 0.00 0.00 37.47 4.85
6709 9708 0.176680 CATCCGCTAGGCAGAGTGTT 59.823 55.000 0.00 0.00 37.47 3.32
6759 9758 8.044060 TGTCTGATTTCATTGGAAGTCAATAC 57.956 34.615 4.58 6.27 45.47 1.89
6873 9874 4.611943 TGTTTGTCTCAGTCTCTCTTTCG 58.388 43.478 0.00 0.00 0.00 3.46
6874 9875 3.924918 TTGTCTCAGTCTCTCTTTCGG 57.075 47.619 0.00 0.00 0.00 4.30
6952 9955 7.390027 TCTCAGGAGCAATCTTTTATATAGGC 58.610 38.462 0.00 0.00 0.00 3.93
7061 10224 2.115291 GCCCATTTGAGCTCGGGAC 61.115 63.158 24.14 13.50 41.62 4.46
7069 10232 1.860641 TGAGCTCGGGACCAGAATAA 58.139 50.000 9.64 0.00 0.00 1.40
7078 10276 3.368116 CGGGACCAGAATAAGACTTTCGT 60.368 47.826 0.00 0.00 0.00 3.85
7101 10299 1.806542 CTGGAGCTTTGCTTTCGCTAA 59.193 47.619 0.00 0.00 39.88 3.09
7143 10341 1.888391 GCTGCTTAGAAGGCCAGGTTT 60.888 52.381 5.01 0.00 0.00 3.27
7176 10374 2.447244 CCGTCTGGCTCTAATCCATC 57.553 55.000 0.00 0.00 32.37 3.51
7179 10377 3.574396 CCGTCTGGCTCTAATCCATCTTA 59.426 47.826 0.00 0.00 32.37 2.10
7197 10395 1.836999 TACATGGAACCGTGCAGCCT 61.837 55.000 12.32 0.00 36.48 4.58
7262 10462 5.476945 GGAAAAGACATGATTGGTTGGTACT 59.523 40.000 0.00 0.00 0.00 2.73
7271 10471 0.770557 TGGTTGGTACTGCCTCCCTT 60.771 55.000 0.00 0.00 38.35 3.95
7274 10474 0.474854 TTGGTACTGCCTCCCTTCCA 60.475 55.000 0.00 0.00 38.35 3.53
7280 10480 4.536489 GGTACTGCCTCCCTTCCATAATAT 59.464 45.833 0.00 0.00 0.00 1.28
7282 10482 6.214819 GGTACTGCCTCCCTTCCATAATATAA 59.785 42.308 0.00 0.00 0.00 0.98
7285 10485 6.737608 ACTGCCTCCCTTCCATAATATAAGAT 59.262 38.462 0.00 0.00 0.00 2.40
7286 10486 6.962182 TGCCTCCCTTCCATAATATAAGATG 58.038 40.000 0.00 0.00 0.00 2.90
7342 10542 4.228237 ACATTATGGGATGGAGGGAGTA 57.772 45.455 0.00 0.00 0.00 2.59
7370 10570 4.508461 TGTTGCTCGTACTGTAAAGCTA 57.492 40.909 18.61 11.85 35.76 3.32
7388 10590 3.000727 GCTACAGGTTGCGATGTTTACT 58.999 45.455 0.00 0.00 0.00 2.24
7398 10600 1.530720 CGATGTTTACTGTGCAGTGCA 59.469 47.619 15.37 15.37 42.52 4.57
7399 10601 2.411935 CGATGTTTACTGTGCAGTGCAG 60.412 50.000 20.42 10.70 42.52 4.41
7508 10710 1.406898 CTGCAATCTCGCTCTACCAGA 59.593 52.381 0.00 0.00 0.00 3.86
7521 10723 2.950309 TCTACCAGAGAAGTACGATGCC 59.050 50.000 0.00 0.00 0.00 4.40
7575 10786 3.181466 GGAGGCAAAAGCTTTTCCTTTCA 60.181 43.478 28.39 0.00 34.12 2.69
7576 10787 4.503817 GGAGGCAAAAGCTTTTCCTTTCAT 60.504 41.667 28.39 15.83 34.12 2.57
7577 10788 4.635223 AGGCAAAAGCTTTTCCTTTCATC 58.365 39.130 25.08 6.73 34.12 2.92
7605 10816 5.897050 ACTAAGAAGAAGATAGTTGCTCGG 58.103 41.667 0.00 0.00 0.00 4.63
7670 10881 7.202016 TGATCTTTTAGTCATTTTTGCGTCT 57.798 32.000 0.00 0.00 0.00 4.18
7671 10882 7.077605 TGATCTTTTAGTCATTTTTGCGTCTG 58.922 34.615 0.00 0.00 0.00 3.51
7693 10904 9.871238 GTCTGTCACTGATAATCCTTTTACTAA 57.129 33.333 0.00 0.00 0.00 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 2.799540 GAACGGCCGTGATTCTCGC 61.800 63.158 34.95 10.04 0.00 5.03
3 4 2.165301 GGAACGGCCGTGATTCTCG 61.165 63.158 34.95 0.60 0.00 4.04
4 5 0.806492 GAGGAACGGCCGTGATTCTC 60.806 60.000 34.95 26.28 43.43 2.87
5 6 1.218316 GAGGAACGGCCGTGATTCT 59.782 57.895 34.95 22.28 43.43 2.40
6 7 1.814169 GGAGGAACGGCCGTGATTC 60.814 63.158 34.95 25.46 43.43 2.52
7 8 2.240162 GAGGAGGAACGGCCGTGATT 62.240 60.000 34.95 17.80 43.43 2.57
8 9 2.683933 AGGAGGAACGGCCGTGAT 60.684 61.111 34.95 18.73 43.43 3.06
9 10 3.379445 GAGGAGGAACGGCCGTGA 61.379 66.667 34.95 0.00 43.43 4.35
10 11 4.796231 CGAGGAGGAACGGCCGTG 62.796 72.222 34.95 13.15 43.43 4.94
12 13 2.775032 TTTTCGAGGAGGAACGGCCG 62.775 60.000 26.86 26.86 43.43 6.13
13 14 1.004200 TTTTCGAGGAGGAACGGCC 60.004 57.895 0.00 0.00 0.00 6.13
14 15 2.160063 GTTTTCGAGGAGGAACGGC 58.840 57.895 0.00 0.00 0.00 5.68
56 57 1.069513 TGACTCTCGCGGAAGGAAAAA 59.930 47.619 6.13 0.00 0.00 1.94
57 58 0.677288 TGACTCTCGCGGAAGGAAAA 59.323 50.000 6.13 0.00 0.00 2.29
58 59 0.038526 GTGACTCTCGCGGAAGGAAA 60.039 55.000 6.13 0.00 0.00 3.13
59 60 1.585006 GTGACTCTCGCGGAAGGAA 59.415 57.895 6.13 0.00 0.00 3.36
60 61 2.687805 CGTGACTCTCGCGGAAGGA 61.688 63.158 6.13 0.00 45.61 3.36
61 62 2.202492 CGTGACTCTCGCGGAAGG 60.202 66.667 6.13 0.00 45.61 3.46
67 68 0.737715 AGCAAATCCGTGACTCTCGC 60.738 55.000 0.00 0.00 0.00 5.03
68 69 1.714794 AAGCAAATCCGTGACTCTCG 58.285 50.000 0.00 0.00 0.00 4.04
69 70 2.092838 CGAAAGCAAATCCGTGACTCTC 59.907 50.000 0.00 0.00 0.00 3.20
70 71 2.069273 CGAAAGCAAATCCGTGACTCT 58.931 47.619 0.00 0.00 0.00 3.24
71 72 2.510615 CGAAAGCAAATCCGTGACTC 57.489 50.000 0.00 0.00 0.00 3.36
85 86 1.961277 AACCGTGCCTCTGCGAAAG 60.961 57.895 0.00 0.00 41.78 2.62
86 87 2.110213 AACCGTGCCTCTGCGAAA 59.890 55.556 0.00 0.00 41.78 3.46
87 88 2.664851 CAACCGTGCCTCTGCGAA 60.665 61.111 0.00 0.00 41.78 4.70
88 89 3.923864 ACAACCGTGCCTCTGCGA 61.924 61.111 0.00 0.00 41.78 5.10
89 90 3.716006 CACAACCGTGCCTCTGCG 61.716 66.667 0.00 0.00 41.78 5.18
90 91 1.237285 AATCACAACCGTGCCTCTGC 61.237 55.000 0.00 0.00 43.28 4.26
91 92 0.798776 GAATCACAACCGTGCCTCTG 59.201 55.000 0.00 0.00 43.28 3.35
92 93 0.321653 GGAATCACAACCGTGCCTCT 60.322 55.000 0.00 0.00 43.28 3.69
93 94 0.321653 AGGAATCACAACCGTGCCTC 60.322 55.000 0.00 0.00 43.28 4.70
94 95 0.110486 AAGGAATCACAACCGTGCCT 59.890 50.000 0.00 0.00 43.28 4.75
95 96 0.240945 CAAGGAATCACAACCGTGCC 59.759 55.000 0.00 0.00 43.28 5.01
96 97 1.197721 CTCAAGGAATCACAACCGTGC 59.802 52.381 0.00 0.00 43.28 5.34
97 98 2.738846 CTCTCAAGGAATCACAACCGTG 59.261 50.000 0.00 0.00 45.08 4.94
98 99 2.289694 CCTCTCAAGGAATCACAACCGT 60.290 50.000 0.00 0.00 46.67 4.83
99 100 2.350522 CCTCTCAAGGAATCACAACCG 58.649 52.381 0.00 0.00 46.67 4.44
100 101 2.087646 GCCTCTCAAGGAATCACAACC 58.912 52.381 0.00 0.00 46.67 3.77
101 102 2.485814 GTGCCTCTCAAGGAATCACAAC 59.514 50.000 0.00 0.00 46.67 3.32
102 103 2.783135 GTGCCTCTCAAGGAATCACAA 58.217 47.619 0.00 0.00 46.67 3.33
103 104 1.338105 CGTGCCTCTCAAGGAATCACA 60.338 52.381 0.00 0.00 46.67 3.58
104 105 1.066858 TCGTGCCTCTCAAGGAATCAC 60.067 52.381 0.00 0.00 46.67 3.06
105 106 1.205655 CTCGTGCCTCTCAAGGAATCA 59.794 52.381 0.00 0.00 46.67 2.57
106 107 1.933247 CTCGTGCCTCTCAAGGAATC 58.067 55.000 0.00 0.00 46.67 2.52
107 108 0.107945 GCTCGTGCCTCTCAAGGAAT 60.108 55.000 0.00 0.00 46.67 3.01
108 109 1.293498 GCTCGTGCCTCTCAAGGAA 59.707 57.895 0.00 0.00 46.67 3.36
109 110 2.973899 GCTCGTGCCTCTCAAGGA 59.026 61.111 0.00 0.00 46.67 3.36
110 111 2.507992 CGCTCGTGCCTCTCAAGG 60.508 66.667 3.52 0.00 46.44 3.61
111 112 2.091112 CACGCTCGTGCCTCTCAAG 61.091 63.158 9.55 0.00 39.39 3.02
112 113 2.049156 CACGCTCGTGCCTCTCAA 60.049 61.111 9.55 0.00 39.39 3.02
121 122 2.416244 TTCGAAAGAGGCACGCTCGT 62.416 55.000 0.00 0.00 37.64 4.18
122 123 1.282248 TTTCGAAAGAGGCACGCTCG 61.282 55.000 6.47 3.16 37.64 5.03
123 124 0.865769 TTTTCGAAAGAGGCACGCTC 59.134 50.000 10.98 0.00 37.64 5.03
124 125 0.868406 CTTTTCGAAAGAGGCACGCT 59.132 50.000 10.98 0.00 43.09 5.07
125 126 0.110192 CCTTTTCGAAAGAGGCACGC 60.110 55.000 19.33 0.00 43.69 5.34
126 127 1.508632 TCCTTTTCGAAAGAGGCACG 58.491 50.000 23.34 9.35 43.69 5.34
127 128 3.982576 TTTCCTTTTCGAAAGAGGCAC 57.017 42.857 23.34 0.00 43.69 5.01
128 129 4.993029 TTTTTCCTTTTCGAAAGAGGCA 57.007 36.364 23.34 15.81 43.69 4.75
147 148 1.404035 GAACTGGGAGCACGTGTTTTT 59.596 47.619 18.38 0.28 0.00 1.94
148 149 1.021968 GAACTGGGAGCACGTGTTTT 58.978 50.000 18.38 1.26 0.00 2.43
149 150 1.157870 CGAACTGGGAGCACGTGTTT 61.158 55.000 18.38 5.87 0.00 2.83
150 151 1.594293 CGAACTGGGAGCACGTGTT 60.594 57.895 18.38 11.90 0.00 3.32
151 152 2.029073 CGAACTGGGAGCACGTGT 59.971 61.111 18.38 3.69 0.00 4.49
152 153 2.738521 CCGAACTGGGAGCACGTG 60.739 66.667 12.28 12.28 0.00 4.49
153 154 2.319890 AAACCGAACTGGGAGCACGT 62.320 55.000 0.00 0.00 44.64 4.49
154 155 1.164041 AAAACCGAACTGGGAGCACG 61.164 55.000 0.00 0.00 44.64 5.34
155 156 1.029681 AAAAACCGAACTGGGAGCAC 58.970 50.000 0.00 0.00 44.64 4.40
156 157 3.505835 AAAAACCGAACTGGGAGCA 57.494 47.368 0.00 0.00 44.64 4.26
197 198 5.238006 TGATCGGTTTTGACGAACTTTTT 57.762 34.783 0.00 0.00 44.20 1.94
198 199 4.886247 TGATCGGTTTTGACGAACTTTT 57.114 36.364 0.00 0.00 44.20 2.27
199 200 4.095185 TGTTGATCGGTTTTGACGAACTTT 59.905 37.500 0.00 0.00 44.20 2.66
200 201 3.623960 TGTTGATCGGTTTTGACGAACTT 59.376 39.130 0.00 0.00 44.20 2.66
201 202 3.199677 TGTTGATCGGTTTTGACGAACT 58.800 40.909 0.00 0.00 44.20 3.01
202 203 3.595709 TGTTGATCGGTTTTGACGAAC 57.404 42.857 0.00 0.00 44.20 3.95
203 204 3.058570 CCATGTTGATCGGTTTTGACGAA 60.059 43.478 0.00 0.00 44.20 3.85
204 205 2.482336 CCATGTTGATCGGTTTTGACGA 59.518 45.455 0.00 0.00 45.19 4.20
205 206 2.482336 TCCATGTTGATCGGTTTTGACG 59.518 45.455 0.00 0.00 0.00 4.35
206 207 4.396166 AGATCCATGTTGATCGGTTTTGAC 59.604 41.667 6.38 0.00 44.72 3.18
207 208 4.588899 AGATCCATGTTGATCGGTTTTGA 58.411 39.130 6.38 0.00 44.72 2.69
208 209 4.970662 AGATCCATGTTGATCGGTTTTG 57.029 40.909 6.38 0.00 44.72 2.44
209 210 5.745227 ACTAGATCCATGTTGATCGGTTTT 58.255 37.500 0.00 0.00 44.72 2.43
210 211 5.359194 ACTAGATCCATGTTGATCGGTTT 57.641 39.130 0.00 0.00 44.72 3.27
211 212 5.359194 AACTAGATCCATGTTGATCGGTT 57.641 39.130 0.00 14.19 44.72 4.44
212 213 5.359194 AAACTAGATCCATGTTGATCGGT 57.641 39.130 0.00 6.91 44.72 4.69
213 214 5.817296 TCAAAACTAGATCCATGTTGATCGG 59.183 40.000 0.00 6.45 44.72 4.18
214 215 6.908870 TCAAAACTAGATCCATGTTGATCG 57.091 37.500 0.00 0.00 44.72 3.69
217 218 9.300681 AGATTTTCAAAACTAGATCCATGTTGA 57.699 29.630 0.00 0.00 0.00 3.18
218 219 9.565213 GAGATTTTCAAAACTAGATCCATGTTG 57.435 33.333 0.00 0.00 0.00 3.33
219 220 8.454106 CGAGATTTTCAAAACTAGATCCATGTT 58.546 33.333 0.00 0.00 0.00 2.71
220 221 7.824289 TCGAGATTTTCAAAACTAGATCCATGT 59.176 33.333 0.00 0.00 0.00 3.21
221 222 8.119226 GTCGAGATTTTCAAAACTAGATCCATG 58.881 37.037 0.00 0.00 28.72 3.66
222 223 7.010552 CGTCGAGATTTTCAAAACTAGATCCAT 59.989 37.037 0.00 0.00 28.72 3.41
223 224 6.310467 CGTCGAGATTTTCAAAACTAGATCCA 59.690 38.462 0.00 0.00 28.72 3.41
224 225 6.697152 CGTCGAGATTTTCAAAACTAGATCC 58.303 40.000 0.00 0.00 28.72 3.36
225 226 6.179193 GCGTCGAGATTTTCAAAACTAGATC 58.821 40.000 0.00 0.00 28.72 2.75
226 227 5.220228 CGCGTCGAGATTTTCAAAACTAGAT 60.220 40.000 0.00 0.00 28.72 1.98
227 228 4.089493 CGCGTCGAGATTTTCAAAACTAGA 59.911 41.667 0.00 0.00 0.00 2.43
228 229 4.089493 TCGCGTCGAGATTTTCAAAACTAG 59.911 41.667 5.77 0.00 0.00 2.57
229 230 3.982701 TCGCGTCGAGATTTTCAAAACTA 59.017 39.130 5.77 0.00 0.00 2.24
230 231 2.798283 TCGCGTCGAGATTTTCAAAACT 59.202 40.909 5.77 0.00 0.00 2.66
231 232 3.163642 TCGCGTCGAGATTTTCAAAAC 57.836 42.857 5.77 0.00 0.00 2.43
243 244 1.153901 GTTGGATTCCTCGCGTCGA 60.154 57.895 5.77 0.00 0.00 4.20
244 245 2.505498 CGTTGGATTCCTCGCGTCG 61.505 63.158 5.77 0.00 0.00 5.12
245 246 2.165301 CCGTTGGATTCCTCGCGTC 61.165 63.158 5.77 0.00 0.00 5.19
246 247 2.125673 CCGTTGGATTCCTCGCGT 60.126 61.111 5.77 0.00 0.00 6.01
247 248 2.125673 ACCGTTGGATTCCTCGCG 60.126 61.111 0.00 0.00 0.00 5.87
248 249 3.486263 CACCGTTGGATTCCTCGC 58.514 61.111 3.95 0.00 0.00 5.03
257 258 2.593436 AACCGCTTCCACCGTTGG 60.593 61.111 0.00 0.00 45.56 3.77
258 259 2.613506 GGAACCGCTTCCACCGTTG 61.614 63.158 4.55 0.00 45.11 4.10
259 260 2.281276 GGAACCGCTTCCACCGTT 60.281 61.111 4.55 0.00 45.11 4.44
265 266 1.821216 TTGAATCAGGAACCGCTTCC 58.179 50.000 0.87 0.87 46.03 3.46
266 267 2.552315 TGTTTGAATCAGGAACCGCTTC 59.448 45.455 0.00 0.00 0.00 3.86
267 268 2.293399 GTGTTTGAATCAGGAACCGCTT 59.707 45.455 0.00 0.00 0.00 4.68
268 269 1.880027 GTGTTTGAATCAGGAACCGCT 59.120 47.619 0.00 0.00 0.00 5.52
269 270 1.606668 TGTGTTTGAATCAGGAACCGC 59.393 47.619 0.00 0.00 0.00 5.68
270 271 2.878406 AGTGTGTTTGAATCAGGAACCG 59.122 45.455 0.00 0.00 0.00 4.44
271 272 3.632145 ACAGTGTGTTTGAATCAGGAACC 59.368 43.478 0.00 0.00 0.00 3.62
272 273 4.900635 ACAGTGTGTTTGAATCAGGAAC 57.099 40.909 0.00 0.00 0.00 3.62
299 300 9.634163 GGTTCATTTATTCAAAACGGTTTATCT 57.366 29.630 6.53 0.00 0.00 1.98
300 301 9.634163 AGGTTCATTTATTCAAAACGGTTTATC 57.366 29.630 6.53 0.00 0.00 1.75
302 303 9.896263 GTAGGTTCATTTATTCAAAACGGTTTA 57.104 29.630 6.53 0.00 0.00 2.01
303 304 7.592164 CGTAGGTTCATTTATTCAAAACGGTTT 59.408 33.333 0.00 0.00 0.00 3.27
304 305 7.041235 TCGTAGGTTCATTTATTCAAAACGGTT 60.041 33.333 0.00 0.00 0.00 4.44
305 306 6.427547 TCGTAGGTTCATTTATTCAAAACGGT 59.572 34.615 0.00 0.00 0.00 4.83
306 307 6.833839 TCGTAGGTTCATTTATTCAAAACGG 58.166 36.000 0.00 0.00 0.00 4.44
307 308 8.716619 TTTCGTAGGTTCATTTATTCAAAACG 57.283 30.769 0.00 0.00 0.00 3.60
310 311 9.685828 CCTTTTTCGTAGGTTCATTTATTCAAA 57.314 29.630 0.00 0.00 0.00 2.69
311 312 9.069082 TCCTTTTTCGTAGGTTCATTTATTCAA 57.931 29.630 0.00 0.00 34.29 2.69
312 313 8.624367 TCCTTTTTCGTAGGTTCATTTATTCA 57.376 30.769 0.00 0.00 34.29 2.57
313 314 9.902196 TTTCCTTTTTCGTAGGTTCATTTATTC 57.098 29.630 0.00 0.00 34.29 1.75
316 317 9.518906 GTTTTTCCTTTTTCGTAGGTTCATTTA 57.481 29.630 0.00 0.00 34.29 1.40
317 318 8.255206 AGTTTTTCCTTTTTCGTAGGTTCATTT 58.745 29.630 0.00 0.00 34.29 2.32
318 319 7.778083 AGTTTTTCCTTTTTCGTAGGTTCATT 58.222 30.769 0.00 0.00 34.29 2.57
319 320 7.342769 AGTTTTTCCTTTTTCGTAGGTTCAT 57.657 32.000 0.00 0.00 34.29 2.57
320 321 6.762702 AGTTTTTCCTTTTTCGTAGGTTCA 57.237 33.333 0.00 0.00 34.29 3.18
321 322 7.675270 GAAGTTTTTCCTTTTTCGTAGGTTC 57.325 36.000 0.00 0.00 34.29 3.62
336 337 0.383949 TGGCGCACAGGAAGTTTTTC 59.616 50.000 10.83 0.00 0.00 2.29
337 338 0.102300 GTGGCGCACAGGAAGTTTTT 59.898 50.000 10.83 0.00 34.08 1.94
338 339 0.751643 AGTGGCGCACAGGAAGTTTT 60.752 50.000 10.83 0.00 36.74 2.43
339 340 0.751643 AAGTGGCGCACAGGAAGTTT 60.752 50.000 10.83 0.00 36.74 2.66
340 341 0.107831 TAAGTGGCGCACAGGAAGTT 59.892 50.000 10.83 0.00 36.74 2.66
341 342 0.324943 ATAAGTGGCGCACAGGAAGT 59.675 50.000 10.83 0.00 36.74 3.01
342 343 1.131126 CAATAAGTGGCGCACAGGAAG 59.869 52.381 10.83 0.00 36.74 3.46
343 344 1.164411 CAATAAGTGGCGCACAGGAA 58.836 50.000 10.83 0.00 36.74 3.36
344 345 1.305219 GCAATAAGTGGCGCACAGGA 61.305 55.000 10.83 0.00 36.74 3.86
345 346 1.137404 GCAATAAGTGGCGCACAGG 59.863 57.895 10.83 0.00 36.74 4.00
346 347 0.240678 TTGCAATAAGTGGCGCACAG 59.759 50.000 10.83 0.00 36.74 3.66
347 348 0.887247 ATTGCAATAAGTGGCGCACA 59.113 45.000 11.02 1.22 36.74 4.57
348 349 1.133025 AGATTGCAATAAGTGGCGCAC 59.867 47.619 12.97 5.73 33.29 5.34
349 350 1.132834 CAGATTGCAATAAGTGGCGCA 59.867 47.619 12.97 0.00 0.00 6.09
350 351 1.401552 TCAGATTGCAATAAGTGGCGC 59.598 47.619 12.97 0.00 0.00 6.53
351 352 3.624900 CATCAGATTGCAATAAGTGGCG 58.375 45.455 12.97 2.27 0.00 5.69
352 353 3.378339 GCATCAGATTGCAATAAGTGGC 58.622 45.455 12.97 10.22 42.31 5.01
353 354 3.065786 ACGCATCAGATTGCAATAAGTGG 59.934 43.478 12.97 3.81 42.91 4.00
354 355 4.282950 ACGCATCAGATTGCAATAAGTG 57.717 40.909 12.97 10.45 42.91 3.16
355 356 4.395854 TCAACGCATCAGATTGCAATAAGT 59.604 37.500 12.97 0.00 42.91 2.24
356 357 4.912214 TCAACGCATCAGATTGCAATAAG 58.088 39.130 12.97 8.08 42.91 1.73
357 358 4.961435 TCAACGCATCAGATTGCAATAA 57.039 36.364 12.97 1.28 42.91 1.40
358 359 4.336153 ACATCAACGCATCAGATTGCAATA 59.664 37.500 12.97 0.00 42.91 1.90
359 360 3.129813 ACATCAACGCATCAGATTGCAAT 59.870 39.130 12.83 12.83 42.91 3.56
360 361 2.488937 ACATCAACGCATCAGATTGCAA 59.511 40.909 0.00 0.00 42.91 4.08
361 362 2.086094 ACATCAACGCATCAGATTGCA 58.914 42.857 5.89 0.00 42.91 4.08
362 363 2.096335 TCACATCAACGCATCAGATTGC 59.904 45.455 0.00 0.00 39.29 3.56
363 364 4.272748 AGATCACATCAACGCATCAGATTG 59.727 41.667 0.00 0.00 0.00 2.67
364 365 4.449131 AGATCACATCAACGCATCAGATT 58.551 39.130 0.00 0.00 0.00 2.40
365 366 4.069300 AGATCACATCAACGCATCAGAT 57.931 40.909 0.00 0.00 0.00 2.90
366 367 3.531934 AGATCACATCAACGCATCAGA 57.468 42.857 0.00 0.00 0.00 3.27
367 368 4.340263 CAAAGATCACATCAACGCATCAG 58.660 43.478 0.00 0.00 0.00 2.90
368 369 3.426560 GCAAAGATCACATCAACGCATCA 60.427 43.478 0.00 0.00 0.00 3.07
369 370 3.103738 GCAAAGATCACATCAACGCATC 58.896 45.455 0.00 0.00 0.00 3.91
370 371 2.488937 TGCAAAGATCACATCAACGCAT 59.511 40.909 0.00 0.00 0.00 4.73
371 372 1.878734 TGCAAAGATCACATCAACGCA 59.121 42.857 0.00 0.00 0.00 5.24
372 373 2.617250 TGCAAAGATCACATCAACGC 57.383 45.000 0.00 0.00 0.00 4.84
373 374 2.904319 CGTTGCAAAGATCACATCAACG 59.096 45.455 20.34 20.34 46.39 4.10
374 375 4.145876 TCGTTGCAAAGATCACATCAAC 57.854 40.909 11.22 3.45 0.00 3.18
375 376 3.814842 ACTCGTTGCAAAGATCACATCAA 59.185 39.130 15.52 0.00 0.00 2.57
376 377 3.402110 ACTCGTTGCAAAGATCACATCA 58.598 40.909 15.52 0.00 0.00 3.07
377 378 4.627467 AGTACTCGTTGCAAAGATCACATC 59.373 41.667 15.52 4.33 0.00 3.06
378 379 4.569943 AGTACTCGTTGCAAAGATCACAT 58.430 39.130 15.52 2.71 0.00 3.21
379 380 3.990092 AGTACTCGTTGCAAAGATCACA 58.010 40.909 15.52 0.00 0.00 3.58
380 381 4.686554 AGAAGTACTCGTTGCAAAGATCAC 59.313 41.667 15.52 14.91 0.00 3.06
381 382 4.883083 AGAAGTACTCGTTGCAAAGATCA 58.117 39.130 15.52 3.95 0.00 2.92
382 383 5.443142 GAGAAGTACTCGTTGCAAAGATC 57.557 43.478 15.52 9.76 35.84 2.75
394 395 9.063739 CGTAAAATCACTAACTGAGAAGTACTC 57.936 37.037 0.00 0.00 45.11 2.59
395 396 8.574737 ACGTAAAATCACTAACTGAGAAGTACT 58.425 33.333 0.00 0.00 30.20 2.73
396 397 8.739649 ACGTAAAATCACTAACTGAGAAGTAC 57.260 34.615 0.00 0.00 30.20 2.73
398 399 9.408069 CTTACGTAAAATCACTAACTGAGAAGT 57.592 33.333 9.68 0.00 30.20 3.01
399 400 8.861101 CCTTACGTAAAATCACTAACTGAGAAG 58.139 37.037 9.68 0.00 30.20 2.85
400 401 8.362639 ACCTTACGTAAAATCACTAACTGAGAA 58.637 33.333 9.68 0.00 30.20 2.87
401 402 7.811236 CACCTTACGTAAAATCACTAACTGAGA 59.189 37.037 9.68 0.00 30.20 3.27
402 403 7.063074 CCACCTTACGTAAAATCACTAACTGAG 59.937 40.741 9.68 0.00 30.20 3.35
403 404 6.869913 CCACCTTACGTAAAATCACTAACTGA 59.130 38.462 9.68 0.00 0.00 3.41
404 405 6.401796 GCCACCTTACGTAAAATCACTAACTG 60.402 42.308 9.68 0.00 0.00 3.16
405 406 5.640783 GCCACCTTACGTAAAATCACTAACT 59.359 40.000 9.68 0.00 0.00 2.24
406 407 5.445010 CGCCACCTTACGTAAAATCACTAAC 60.445 44.000 9.68 0.00 0.00 2.34
407 408 4.626604 CGCCACCTTACGTAAAATCACTAA 59.373 41.667 9.68 0.00 0.00 2.24
408 409 4.175516 CGCCACCTTACGTAAAATCACTA 58.824 43.478 9.68 0.00 0.00 2.74
409 410 2.997986 CGCCACCTTACGTAAAATCACT 59.002 45.455 9.68 0.00 0.00 3.41
410 411 2.738314 ACGCCACCTTACGTAAAATCAC 59.262 45.455 9.68 0.00 41.48 3.06
411 412 3.042871 ACGCCACCTTACGTAAAATCA 57.957 42.857 9.68 0.00 41.48 2.57
412 413 4.408993 AAACGCCACCTTACGTAAAATC 57.591 40.909 9.68 0.00 42.68 2.17
413 414 4.392754 CCTAAACGCCACCTTACGTAAAAT 59.607 41.667 9.68 0.00 42.68 1.82
414 415 3.745458 CCTAAACGCCACCTTACGTAAAA 59.255 43.478 9.68 0.00 42.68 1.52
415 416 3.006323 TCCTAAACGCCACCTTACGTAAA 59.994 43.478 9.68 0.00 42.68 2.01
416 417 2.560542 TCCTAAACGCCACCTTACGTAA 59.439 45.455 7.94 7.94 42.68 3.18
417 418 2.166829 TCCTAAACGCCACCTTACGTA 58.833 47.619 0.00 0.00 42.68 3.57
418 419 0.968405 TCCTAAACGCCACCTTACGT 59.032 50.000 0.00 0.00 46.07 3.57
419 420 2.083167 TTCCTAAACGCCACCTTACG 57.917 50.000 0.00 0.00 0.00 3.18
420 421 2.681344 CCATTCCTAAACGCCACCTTAC 59.319 50.000 0.00 0.00 0.00 2.34
421 422 2.942306 GCCATTCCTAAACGCCACCTTA 60.942 50.000 0.00 0.00 0.00 2.69
422 423 1.834188 CCATTCCTAAACGCCACCTT 58.166 50.000 0.00 0.00 0.00 3.50
423 424 0.679960 GCCATTCCTAAACGCCACCT 60.680 55.000 0.00 0.00 0.00 4.00
424 425 1.663379 GGCCATTCCTAAACGCCACC 61.663 60.000 0.00 0.00 39.50 4.61
425 426 1.807226 GGCCATTCCTAAACGCCAC 59.193 57.895 0.00 0.00 39.50 5.01
426 427 1.747367 CGGCCATTCCTAAACGCCA 60.747 57.895 2.24 0.00 39.69 5.69
427 428 1.027792 TTCGGCCATTCCTAAACGCC 61.028 55.000 2.24 0.00 36.21 5.68
428 429 0.806241 TTTCGGCCATTCCTAAACGC 59.194 50.000 2.24 0.00 0.00 4.84
429 430 1.202143 GCTTTCGGCCATTCCTAAACG 60.202 52.381 2.24 0.00 34.27 3.60
430 431 1.816224 TGCTTTCGGCCATTCCTAAAC 59.184 47.619 2.24 0.00 40.92 2.01
431 432 2.208132 TGCTTTCGGCCATTCCTAAA 57.792 45.000 2.24 0.00 40.92 1.85
432 433 2.208132 TTGCTTTCGGCCATTCCTAA 57.792 45.000 2.24 0.00 40.92 2.69
433 434 2.208132 TTTGCTTTCGGCCATTCCTA 57.792 45.000 2.24 0.00 40.92 2.94
434 435 1.560505 ATTTGCTTTCGGCCATTCCT 58.439 45.000 2.24 0.00 40.92 3.36
435 436 2.427095 ACTATTTGCTTTCGGCCATTCC 59.573 45.455 2.24 0.00 40.92 3.01
436 437 3.782889 ACTATTTGCTTTCGGCCATTC 57.217 42.857 2.24 0.00 40.92 2.67
437 438 4.013728 TGTACTATTTGCTTTCGGCCATT 58.986 39.130 2.24 0.00 40.92 3.16
438 439 3.616219 TGTACTATTTGCTTTCGGCCAT 58.384 40.909 2.24 0.00 40.92 4.40
439 440 3.060736 TGTACTATTTGCTTTCGGCCA 57.939 42.857 2.24 0.00 40.92 5.36
440 441 4.814771 ACTATGTACTATTTGCTTTCGGCC 59.185 41.667 0.00 0.00 40.92 6.13
441 442 5.986004 ACTATGTACTATTTGCTTTCGGC 57.014 39.130 0.00 0.00 42.22 5.54
442 443 8.665685 AGAAAACTATGTACTATTTGCTTTCGG 58.334 33.333 0.00 0.00 0.00 4.30
455 456 8.342634 TGCAGACTCAAAAAGAAAACTATGTAC 58.657 33.333 0.00 0.00 0.00 2.90
456 457 8.445275 TGCAGACTCAAAAAGAAAACTATGTA 57.555 30.769 0.00 0.00 0.00 2.29
457 458 7.333528 TGCAGACTCAAAAAGAAAACTATGT 57.666 32.000 0.00 0.00 0.00 2.29
458 459 7.540055 GGATGCAGACTCAAAAAGAAAACTATG 59.460 37.037 0.00 0.00 0.00 2.23
459 460 7.449704 AGGATGCAGACTCAAAAAGAAAACTAT 59.550 33.333 0.00 0.00 0.00 2.12
610 618 5.223449 ACTCACCTTCTGGATTTTCGTTA 57.777 39.130 0.00 0.00 37.04 3.18
845 865 2.025887 AGGCCTTCAGGTGGATTAACAG 60.026 50.000 0.00 0.00 37.57 3.16
850 870 1.000396 GCAGGCCTTCAGGTGGATT 60.000 57.895 0.00 0.00 37.57 3.01
874 894 1.466360 GCAACAGTCAAATAGCAGCCG 60.466 52.381 0.00 0.00 0.00 5.52
1148 1180 4.492955 GAGAGCTCGAGGCAACAG 57.507 61.111 15.58 0.00 44.79 3.16
1593 2026 0.034477 ACCTACATTTTCAGCCGGGG 60.034 55.000 2.18 0.00 0.00 5.73
1906 2339 4.142093 GCTTCATAGTTACAACCCTCGGTA 60.142 45.833 0.00 0.00 33.12 4.02
1915 2348 3.932710 CTCTTGCCGCTTCATAGTTACAA 59.067 43.478 0.00 0.00 0.00 2.41
1954 2387 2.093288 TGGGTTCAACAATTTGCTGCAA 60.093 40.909 11.69 11.69 32.17 4.08
2683 3120 8.918658 CGCTTTTGATACTACACTAGTGTAAAA 58.081 33.333 30.31 25.56 44.47 1.52
2684 3121 7.543172 CCGCTTTTGATACTACACTAGTGTAAA 59.457 37.037 30.31 22.89 44.47 2.01
2685 3122 7.031372 CCGCTTTTGATACTACACTAGTGTAA 58.969 38.462 30.31 20.19 44.47 2.41
2686 3123 6.151648 ACCGCTTTTGATACTACACTAGTGTA 59.848 38.462 29.21 29.21 44.42 2.90
2687 3124 5.047519 ACCGCTTTTGATACTACACTAGTGT 60.048 40.000 30.13 30.13 46.87 3.55
2688 3125 5.408356 ACCGCTTTTGATACTACACTAGTG 58.592 41.667 21.44 21.44 39.81 2.74
2689 3126 5.418209 AGACCGCTTTTGATACTACACTAGT 59.582 40.000 0.00 0.00 42.68 2.57
2690 3127 5.892568 AGACCGCTTTTGATACTACACTAG 58.107 41.667 0.00 0.00 0.00 2.57
2691 3128 5.909621 AGACCGCTTTTGATACTACACTA 57.090 39.130 0.00 0.00 0.00 2.74
2692 3129 4.803098 AGACCGCTTTTGATACTACACT 57.197 40.909 0.00 0.00 0.00 3.55
2693 3130 8.813643 ATATAAGACCGCTTTTGATACTACAC 57.186 34.615 0.00 0.00 35.56 2.90
2697 3134 9.436957 CCATAATATAAGACCGCTTTTGATACT 57.563 33.333 0.00 0.00 35.56 2.12
2698 3135 8.665685 CCCATAATATAAGACCGCTTTTGATAC 58.334 37.037 0.00 0.00 35.56 2.24
2699 3136 8.598916 TCCCATAATATAAGACCGCTTTTGATA 58.401 33.333 0.00 0.00 35.56 2.15
2700 3137 7.390718 GTCCCATAATATAAGACCGCTTTTGAT 59.609 37.037 0.00 0.00 35.56 2.57
2701 3138 6.708949 GTCCCATAATATAAGACCGCTTTTGA 59.291 38.462 0.00 0.00 35.56 2.69
2702 3139 6.485313 TGTCCCATAATATAAGACCGCTTTTG 59.515 38.462 0.00 0.00 35.56 2.44
2703 3140 6.597562 TGTCCCATAATATAAGACCGCTTTT 58.402 36.000 0.00 0.00 35.56 2.27
2704 3141 6.042781 TCTGTCCCATAATATAAGACCGCTTT 59.957 38.462 0.00 0.00 35.56 3.51
2705 3142 5.542635 TCTGTCCCATAATATAAGACCGCTT 59.457 40.000 0.00 0.00 38.15 4.68
2706 3143 5.084519 TCTGTCCCATAATATAAGACCGCT 58.915 41.667 0.00 0.00 0.00 5.52
2707 3144 5.401531 TCTGTCCCATAATATAAGACCGC 57.598 43.478 0.00 0.00 0.00 5.68
2708 3145 5.105310 CCCTCTGTCCCATAATATAAGACCG 60.105 48.000 0.00 0.00 0.00 4.79
2709 3146 6.023603 TCCCTCTGTCCCATAATATAAGACC 58.976 44.000 0.00 0.00 0.00 3.85
2710 3147 6.726764 ACTCCCTCTGTCCCATAATATAAGAC 59.273 42.308 0.00 0.00 0.00 3.01
2711 3148 6.875469 ACTCCCTCTGTCCCATAATATAAGA 58.125 40.000 0.00 0.00 0.00 2.10
2712 3149 7.896496 ACTACTCCCTCTGTCCCATAATATAAG 59.104 40.741 0.00 0.00 0.00 1.73
2713 3150 7.776745 ACTACTCCCTCTGTCCCATAATATAA 58.223 38.462 0.00 0.00 0.00 0.98
2714 3151 7.358255 ACTACTCCCTCTGTCCCATAATATA 57.642 40.000 0.00 0.00 0.00 0.86
2715 3152 6.234404 ACTACTCCCTCTGTCCCATAATAT 57.766 41.667 0.00 0.00 0.00 1.28
2716 3153 5.681494 ACTACTCCCTCTGTCCCATAATA 57.319 43.478 0.00 0.00 0.00 0.98
2717 3154 4.561254 ACTACTCCCTCTGTCCCATAAT 57.439 45.455 0.00 0.00 0.00 1.28
2718 3155 4.348020 AACTACTCCCTCTGTCCCATAA 57.652 45.455 0.00 0.00 0.00 1.90
2719 3156 5.681494 ATAACTACTCCCTCTGTCCCATA 57.319 43.478 0.00 0.00 0.00 2.74
2720 3157 2.950990 AACTACTCCCTCTGTCCCAT 57.049 50.000 0.00 0.00 0.00 4.00
2721 3158 4.348020 AATAACTACTCCCTCTGTCCCA 57.652 45.455 0.00 0.00 0.00 4.37
2722 3159 4.141688 CCAAATAACTACTCCCTCTGTCCC 60.142 50.000 0.00 0.00 0.00 4.46
2723 3160 4.683671 GCCAAATAACTACTCCCTCTGTCC 60.684 50.000 0.00 0.00 0.00 4.02
2724 3161 4.162509 AGCCAAATAACTACTCCCTCTGTC 59.837 45.833 0.00 0.00 0.00 3.51
2725 3162 4.104831 AGCCAAATAACTACTCCCTCTGT 58.895 43.478 0.00 0.00 0.00 3.41
2726 3163 4.762289 AGCCAAATAACTACTCCCTCTG 57.238 45.455 0.00 0.00 0.00 3.35
2727 3164 4.783227 TGAAGCCAAATAACTACTCCCTCT 59.217 41.667 0.00 0.00 0.00 3.69
2728 3165 5.099042 TGAAGCCAAATAACTACTCCCTC 57.901 43.478 0.00 0.00 0.00 4.30
2729 3166 5.717119 ATGAAGCCAAATAACTACTCCCT 57.283 39.130 0.00 0.00 0.00 4.20
2730 3167 6.377146 TGAAATGAAGCCAAATAACTACTCCC 59.623 38.462 0.00 0.00 0.00 4.30
2731 3168 7.121315 AGTGAAATGAAGCCAAATAACTACTCC 59.879 37.037 0.00 0.00 0.00 3.85
2732 3169 8.045176 AGTGAAATGAAGCCAAATAACTACTC 57.955 34.615 0.00 0.00 0.00 2.59
2733 3170 9.167311 CTAGTGAAATGAAGCCAAATAACTACT 57.833 33.333 0.00 0.00 0.00 2.57
2842 3315 2.170187 TGACAACATTTTTGGCTTGCCT 59.830 40.909 13.18 0.00 0.00 4.75
2962 3437 7.329588 ACCAGTTGAACAAAACTTAACCTAG 57.670 36.000 0.00 0.00 38.34 3.02
2966 3441 8.238631 TGACTTACCAGTTGAACAAAACTTAAC 58.761 33.333 0.00 0.00 38.34 2.01
2998 3473 0.824759 CCACTGGCTGGGAGTACTAC 59.175 60.000 0.00 0.00 36.18 2.73
3049 3527 4.746115 TCAGCAAGAAATCACAATTTGCAC 59.254 37.500 9.76 0.00 44.81 4.57
3058 3539 6.753744 GGGTCAAATATTCAGCAAGAAATCAC 59.246 38.462 0.00 0.00 40.22 3.06
3167 3675 8.478877 TGACCCTTAAATATGTTTGTGTGTTTT 58.521 29.630 0.00 0.00 0.00 2.43
3200 3712 5.100259 CAGAATTGGCTAAAGCACATCAAG 58.900 41.667 4.07 0.00 44.36 3.02
3235 3747 6.908825 AGCAAACATTTTCGAGCTATAACAA 58.091 32.000 0.00 0.00 0.00 2.83
3445 3957 3.247948 TCACCAGTTCCCAGTAGTGTA 57.752 47.619 0.00 0.00 0.00 2.90
3606 4119 5.966742 AGGAATTTCAGCTCAGGTAAAAC 57.033 39.130 0.00 0.00 0.00 2.43
3607 4120 7.888021 TCAATAGGAATTTCAGCTCAGGTAAAA 59.112 33.333 0.00 0.00 0.00 1.52
3794 6538 1.108727 CCACAGCTCCCAGTGCAAAA 61.109 55.000 0.00 0.00 34.48 2.44
3860 6604 6.694877 AAAGAAAGGTAAGTGTTGAGGTTC 57.305 37.500 0.00 0.00 0.00 3.62
3874 6619 0.185175 AGGCACCGGAAAAGAAAGGT 59.815 50.000 9.46 0.00 37.49 3.50
3875 6620 2.084546 CTAGGCACCGGAAAAGAAAGG 58.915 52.381 9.46 0.00 0.00 3.11
3893 6638 8.414003 CACAAACCTATACAGCTAGTCATTCTA 58.586 37.037 0.00 0.00 0.00 2.10
4093 7019 8.543774 CCATATCTTAGTCCATAGGCTGTTTAT 58.456 37.037 0.00 0.00 0.00 1.40
4148 7078 2.618709 GGAGTAATTTGAATCAGGCCCG 59.381 50.000 0.00 0.00 0.00 6.13
4615 7547 9.617975 GAAAGAGAAAATACAGAAATCAACTGG 57.382 33.333 0.00 0.00 39.38 4.00
4876 7820 2.296752 TGTGCCATTTCACATGGTTCAG 59.703 45.455 0.00 0.00 41.57 3.02
5160 8109 0.252479 CACAGGCTGCTGGATCTTCT 59.748 55.000 15.89 0.00 0.00 2.85
5182 8131 5.907391 CACCAACTGAAGTTTTCATTACGAC 59.093 40.000 0.00 0.00 39.30 4.34
5474 8423 4.636206 CACACCAGTTCCTTAAATAGAGGC 59.364 45.833 0.00 0.00 34.17 4.70
5681 8631 7.447374 TCACAAGTACCAGATAATTTTGTGG 57.553 36.000 10.04 10.04 42.33 4.17
5721 8671 8.547894 GTTCTCCCATTTAATTCACACAAAAAC 58.452 33.333 0.00 0.00 0.00 2.43
5813 8805 5.083533 TGCACTGGTGTTTTCAAGAAAAT 57.916 34.783 10.77 0.00 41.64 1.82
5830 8822 1.176527 AAAATGCCGCACTATGCACT 58.823 45.000 0.00 0.00 45.36 4.40
5852 8844 2.058798 TCAAGAGCGCTTCAAACGTAG 58.941 47.619 13.26 0.00 30.14 3.51
5908 8900 9.611284 CGAGACAAGAAAATTTGACAATGAATA 57.389 29.630 0.00 0.00 0.00 1.75
6093 9089 1.003580 GGTGCCTCTTCTCCAACATCA 59.996 52.381 0.00 0.00 0.00 3.07
6226 9222 9.434420 CATACAAGAAATTGCAAAATTAGGGAA 57.566 29.630 1.71 0.00 0.00 3.97
6247 9243 2.499693 TCCGGTTCTGCTCATTCATACA 59.500 45.455 0.00 0.00 0.00 2.29
6251 9247 2.224523 ACTTTCCGGTTCTGCTCATTCA 60.225 45.455 0.00 0.00 0.00 2.57
6373 9369 2.239150 AGAGAGCACATGAGAGGCAAAT 59.761 45.455 0.00 0.00 0.00 2.32
6471 9470 0.671781 CTGGAGGCTCAACCAACTCG 60.672 60.000 17.69 0.00 43.14 4.18
6495 9494 2.604686 TTCTCCCCGACAGCAGCT 60.605 61.111 0.00 0.00 0.00 4.24
6561 9560 4.542697 ACTTCTCCCAGGTTTTGCTTTTA 58.457 39.130 0.00 0.00 0.00 1.52
6624 9623 4.074627 TGTGAACGGGACATCTTTGTAA 57.925 40.909 0.00 0.00 35.79 2.41
6636 9635 0.030638 CAGCCAAAGTTGTGAACGGG 59.969 55.000 0.00 0.00 36.23 5.28
6650 9649 2.210144 GACCTTGCATACCCCAGCCA 62.210 60.000 0.00 0.00 0.00 4.75
6703 9702 3.431572 GTCAGACTGCAGATTGAACACTC 59.568 47.826 23.35 3.67 0.00 3.51
6709 9708 2.896044 ACTCAGTCAGACTGCAGATTGA 59.104 45.455 23.94 19.43 45.54 2.57
6790 9790 5.014858 AGAGAAGTACCCGAAAGACACATA 58.985 41.667 0.00 0.00 0.00 2.29
6952 9955 4.545823 TTTAAGTTCAGCTGGAAACGTG 57.454 40.909 15.13 0.00 37.23 4.49
7000 10011 0.888619 AGCGCTAGACTTGTAGCACA 59.111 50.000 8.99 0.00 44.98 4.57
7001 10012 2.722071 CTAGCGCTAGACTTGTAGCAC 58.278 52.381 35.85 0.00 44.98 4.40
7003 10014 1.065701 TGCTAGCGCTAGACTTGTAGC 59.934 52.381 41.26 28.58 41.85 3.58
7056 10219 3.187700 CGAAAGTCTTATTCTGGTCCCG 58.812 50.000 0.00 0.00 0.00 5.14
7078 10276 1.800805 CGAAAGCAAAGCTCCAGAGA 58.199 50.000 0.00 0.00 38.25 3.10
7107 10305 8.206325 TCTAAGCAGCAAAGATAAGAGATTTG 57.794 34.615 0.00 0.00 37.07 2.32
7110 10308 6.991531 CCTTCTAAGCAGCAAAGATAAGAGAT 59.008 38.462 0.00 0.00 0.00 2.75
7111 10309 6.344500 CCTTCTAAGCAGCAAAGATAAGAGA 58.656 40.000 0.00 0.00 0.00 3.10
7112 10310 5.007528 GCCTTCTAAGCAGCAAAGATAAGAG 59.992 44.000 0.00 0.00 0.00 2.85
7143 10341 1.950216 CAGACGGCTACTGCTCATCTA 59.050 52.381 0.00 0.00 39.59 1.98
7176 10374 0.447801 GCTGCACGGTTCCATGTAAG 59.552 55.000 0.00 0.00 0.00 2.34
7179 10377 2.672996 GGCTGCACGGTTCCATGT 60.673 61.111 0.50 0.00 0.00 3.21
7197 10395 5.541101 AGAACCACAGTACCACACAGTATAA 59.459 40.000 0.00 0.00 0.00 0.98
7234 10434 6.153340 ACCAACCAATCATGTCTTTTCCATAG 59.847 38.462 0.00 0.00 0.00 2.23
7262 10462 6.505344 ACATCTTATATTATGGAAGGGAGGCA 59.495 38.462 0.00 0.00 0.00 4.75
7315 10515 4.537688 CCCTCCATCCCATAATGTAGATGT 59.462 45.833 0.00 0.00 35.42 3.06
7316 10516 4.784838 TCCCTCCATCCCATAATGTAGATG 59.215 45.833 0.00 0.00 36.66 2.90
7317 10517 5.035556 CTCCCTCCATCCCATAATGTAGAT 58.964 45.833 0.00 0.00 0.00 1.98
7318 10518 4.140447 ACTCCCTCCATCCCATAATGTAGA 60.140 45.833 0.00 0.00 0.00 2.59
7332 10532 1.656587 ACATGCAACTACTCCCTCCA 58.343 50.000 0.00 0.00 0.00 3.86
7370 10570 2.548057 CACAGTAAACATCGCAACCTGT 59.452 45.455 0.00 0.00 0.00 4.00
7388 10590 0.180171 AACACTACCTGCACTGCACA 59.820 50.000 0.00 0.00 33.79 4.57
7440 10642 4.863131 CGAGGGTTGACTGTTAACATCTAC 59.137 45.833 15.95 14.06 0.00 2.59
7508 10710 3.535561 CATTTCCTGGCATCGTACTTCT 58.464 45.455 0.00 0.00 0.00 2.85
7521 10723 5.982890 AAGTTGGTTACATCCATTTCCTG 57.017 39.130 0.00 0.00 37.33 3.86
7647 10858 7.078228 ACAGACGCAAAAATGACTAAAAGATC 58.922 34.615 0.00 0.00 0.00 2.75
7649 10860 6.037720 TGACAGACGCAAAAATGACTAAAAGA 59.962 34.615 0.00 0.00 0.00 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.