Multiple sequence alignment - TraesCS5D01G081300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G081300 chr5D 100.000 3700 0 0 1 3700 81737940 81734241 0.000000e+00 6833.0
1 TraesCS5D01G081300 chr5D 94.022 368 21 1 487 853 480474767 480475134 1.160000e-154 556.0
2 TraesCS5D01G081300 chr5D 74.074 648 124 30 1165 1793 273060650 273061272 3.720000e-55 226.0
3 TraesCS5D01G081300 chr5D 89.583 144 15 0 1166 1309 44488974 44489117 2.270000e-42 183.0
4 TraesCS5D01G081300 chr5D 81.277 235 10 14 78 285 81754052 81753825 3.820000e-35 159.0
5 TraesCS5D01G081300 chr5D 97.059 34 1 0 3445 3478 243880228 243880261 1.440000e-04 58.4
6 TraesCS5D01G081300 chr5B 94.142 1929 67 16 851 2759 90078167 90076265 0.000000e+00 2894.0
7 TraesCS5D01G081300 chr5B 94.628 968 28 11 2757 3700 90076140 90075173 0.000000e+00 1478.0
8 TraesCS5D01G081300 chr5B 74.798 619 111 27 1174 1786 90183843 90183264 1.720000e-58 237.0
9 TraesCS5D01G081300 chr5B 89.583 144 15 0 1166 1309 43884298 43884441 2.270000e-42 183.0
10 TraesCS5D01G081300 chr5B 89.583 144 15 0 1166 1309 44231459 44231316 2.270000e-42 183.0
11 TraesCS5D01G081300 chr5B 93.220 118 7 1 149 265 90176537 90176420 4.910000e-39 172.0
12 TraesCS5D01G081300 chr5B 89.431 123 9 1 285 403 90078339 90078217 6.400000e-33 152.0
13 TraesCS5D01G081300 chr5B 97.059 34 1 0 3445 3478 277129191 277129224 1.440000e-04 58.4
14 TraesCS5D01G081300 chr5A 91.219 968 57 17 2757 3700 77788230 77787267 0.000000e+00 1291.0
15 TraesCS5D01G081300 chr5A 75.304 575 100 23 1174 1743 77791589 77791052 1.720000e-58 237.0
16 TraesCS5D01G081300 chr5A 73.276 812 152 40 1165 1957 362376887 362377652 1.720000e-58 237.0
17 TraesCS5D01G081300 chr5A 90.278 144 14 0 1166 1309 34903678 34903821 4.880000e-44 189.0
18 TraesCS5D01G081300 chr5A 97.059 34 1 0 3445 3478 328081313 328081346 1.440000e-04 58.4
19 TraesCS5D01G081300 chr3D 94.550 367 19 1 487 852 47242331 47242697 1.930000e-157 566.0
20 TraesCS5D01G081300 chr3D 94.293 368 20 1 487 853 313910158 313910525 2.490000e-156 562.0
21 TraesCS5D01G081300 chr3D 94.278 367 20 1 487 852 380952582 380952216 8.970000e-156 560.0
22 TraesCS5D01G081300 chr3D 93.460 367 23 1 487 852 456103779 456103413 9.040000e-151 544.0
23 TraesCS5D01G081300 chr6D 94.005 367 21 1 487 852 59189763 59189397 4.170000e-154 555.0
24 TraesCS5D01G081300 chr2D 94.005 367 21 1 487 852 170006746 170006380 4.170000e-154 555.0
25 TraesCS5D01G081300 chr2D 93.750 368 22 1 487 853 533884319 533883952 5.400000e-153 551.0
26 TraesCS5D01G081300 chr2D 93.514 370 23 1 484 852 196127682 196128051 1.940000e-152 549.0
27 TraesCS5D01G081300 chrUn 90.972 144 13 0 1166 1309 65786917 65786774 1.050000e-45 195.0
28 TraesCS5D01G081300 chr7D 91.241 137 12 0 1169 1305 576858753 576858889 1.750000e-43 187.0
29 TraesCS5D01G081300 chr1D 94.737 38 2 0 2200 2237 423733942 423733905 3.990000e-05 60.2
30 TraesCS5D01G081300 chr1B 94.737 38 2 0 2200 2237 573144612 573144575 3.990000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G081300 chr5D 81734241 81737940 3699 True 6833 6833 100.000000 1 3700 1 chr5D.!!$R1 3699
1 TraesCS5D01G081300 chr5D 273060650 273061272 622 False 226 226 74.074000 1165 1793 1 chr5D.!!$F3 628
2 TraesCS5D01G081300 chr5B 90075173 90078339 3166 True 1508 2894 92.733667 285 3700 3 chr5B.!!$R4 3415
3 TraesCS5D01G081300 chr5B 90183264 90183843 579 True 237 237 74.798000 1174 1786 1 chr5B.!!$R3 612
4 TraesCS5D01G081300 chr5A 77787267 77791589 4322 True 764 1291 83.261500 1174 3700 2 chr5A.!!$R1 2526
5 TraesCS5D01G081300 chr5A 362376887 362377652 765 False 237 237 73.276000 1165 1957 1 chr5A.!!$F3 792

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
614 619 0.042188 CACACTACACTGTGCAACGC 60.042 55.0 7.9 0.0 42.39 4.84 F
739 744 0.107456 GCTAGCTCCTAGGCATTGCA 59.893 55.0 7.7 0.0 34.88 4.08 F
946 956 0.173708 CGACTCCTAACCCTCTGCAC 59.826 60.0 0.0 0.0 0.00 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1467 1506 0.322975 GGCAGAACTCAAGCTCCTGA 59.677 55.000 0.00 0.00 0.00 3.86 R
1740 1782 0.392327 TGATCCGAGCGCATTGGAAA 60.392 50.000 17.41 7.96 45.17 3.13 R
2900 4842 1.003718 AGCTGTACCCCGTTTGAGC 60.004 57.895 0.00 0.00 0.00 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.277142 CCTTTATCCCTAACCGCAACT 57.723 47.619 0.00 0.00 0.00 3.16
21 22 3.617284 CCTTTATCCCTAACCGCAACTT 58.383 45.455 0.00 0.00 0.00 2.66
22 23 3.626217 CCTTTATCCCTAACCGCAACTTC 59.374 47.826 0.00 0.00 0.00 3.01
23 24 4.514401 CTTTATCCCTAACCGCAACTTCT 58.486 43.478 0.00 0.00 0.00 2.85
24 25 4.563140 TTATCCCTAACCGCAACTTCTT 57.437 40.909 0.00 0.00 0.00 2.52
25 26 5.680594 TTATCCCTAACCGCAACTTCTTA 57.319 39.130 0.00 0.00 0.00 2.10
26 27 4.772886 ATCCCTAACCGCAACTTCTTAT 57.227 40.909 0.00 0.00 0.00 1.73
27 28 4.563140 TCCCTAACCGCAACTTCTTATT 57.437 40.909 0.00 0.00 0.00 1.40
28 29 4.913784 TCCCTAACCGCAACTTCTTATTT 58.086 39.130 0.00 0.00 0.00 1.40
29 30 4.698304 TCCCTAACCGCAACTTCTTATTTG 59.302 41.667 0.00 0.00 0.00 2.32
30 31 4.412207 CCTAACCGCAACTTCTTATTTGC 58.588 43.478 0.00 0.00 43.90 3.68
37 38 5.740838 GCAACTTCTTATTTGCGGTTTAC 57.259 39.130 0.00 0.00 38.86 2.01
38 39 5.458015 GCAACTTCTTATTTGCGGTTTACT 58.542 37.500 0.00 0.00 38.86 2.24
39 40 5.918576 GCAACTTCTTATTTGCGGTTTACTT 59.081 36.000 0.00 0.00 38.86 2.24
40 41 6.419710 GCAACTTCTTATTTGCGGTTTACTTT 59.580 34.615 0.00 0.00 38.86 2.66
41 42 7.566868 GCAACTTCTTATTTGCGGTTTACTTTG 60.567 37.037 0.00 0.00 38.86 2.77
42 43 6.443792 ACTTCTTATTTGCGGTTTACTTTGG 58.556 36.000 0.00 0.00 0.00 3.28
43 44 6.040054 ACTTCTTATTTGCGGTTTACTTTGGT 59.960 34.615 0.00 0.00 0.00 3.67
44 45 6.004408 TCTTATTTGCGGTTTACTTTGGTC 57.996 37.500 0.00 0.00 0.00 4.02
45 46 5.531659 TCTTATTTGCGGTTTACTTTGGTCA 59.468 36.000 0.00 0.00 0.00 4.02
46 47 4.657436 ATTTGCGGTTTACTTTGGTCAA 57.343 36.364 0.00 0.00 0.00 3.18
47 48 4.657436 TTTGCGGTTTACTTTGGTCAAT 57.343 36.364 0.00 0.00 0.00 2.57
48 49 4.657436 TTGCGGTTTACTTTGGTCAATT 57.343 36.364 0.00 0.00 0.00 2.32
49 50 3.971150 TGCGGTTTACTTTGGTCAATTG 58.029 40.909 0.00 0.00 0.00 2.32
50 51 3.632604 TGCGGTTTACTTTGGTCAATTGA 59.367 39.130 3.38 3.38 0.00 2.57
51 52 3.978855 GCGGTTTACTTTGGTCAATTGAC 59.021 43.478 27.16 27.16 44.04 3.18
69 70 4.299586 TGACCTTGCAAAGATCATACCA 57.700 40.909 1.09 0.00 42.95 3.25
70 71 4.858850 TGACCTTGCAAAGATCATACCAT 58.141 39.130 1.09 0.00 42.95 3.55
71 72 6.000246 TGACCTTGCAAAGATCATACCATA 58.000 37.500 1.09 0.00 42.95 2.74
72 73 6.057533 TGACCTTGCAAAGATCATACCATAG 58.942 40.000 1.09 0.00 42.95 2.23
73 74 7.408851 TGACCTTGCAAAGATCATACCATAGC 61.409 42.308 1.09 0.00 42.95 2.97
74 75 9.695747 TGACCTTGCAAAGATCATACCATAGCA 62.696 40.741 1.09 0.00 42.95 3.49
76 77 6.964807 TTGCAAAGATCATACCATAGCATT 57.035 33.333 0.00 0.00 0.00 3.56
78 79 8.640063 TTGCAAAGATCATACCATAGCATTAT 57.360 30.769 0.00 0.00 0.00 1.28
79 80 8.640063 TGCAAAGATCATACCATAGCATTATT 57.360 30.769 0.00 0.00 0.00 1.40
80 81 8.517056 TGCAAAGATCATACCATAGCATTATTG 58.483 33.333 0.00 0.00 0.00 1.90
81 82 8.517878 GCAAAGATCATACCATAGCATTATTGT 58.482 33.333 0.00 0.00 0.00 2.71
89 90 9.345517 CATACCATAGCATTATTGTTTATGTGC 57.654 33.333 0.00 0.00 32.50 4.57
90 91 7.345422 ACCATAGCATTATTGTTTATGTGCA 57.655 32.000 0.00 0.00 33.89 4.57
91 92 7.202526 ACCATAGCATTATTGTTTATGTGCAC 58.797 34.615 10.75 10.75 33.89 4.57
92 93 6.642131 CCATAGCATTATTGTTTATGTGCACC 59.358 38.462 15.69 0.00 33.89 5.01
93 94 5.920193 AGCATTATTGTTTATGTGCACCT 57.080 34.783 15.69 7.20 33.89 4.00
94 95 6.284891 AGCATTATTGTTTATGTGCACCTT 57.715 33.333 15.69 4.36 33.89 3.50
95 96 7.403312 AGCATTATTGTTTATGTGCACCTTA 57.597 32.000 15.69 3.26 33.89 2.69
96 97 8.010733 AGCATTATTGTTTATGTGCACCTTAT 57.989 30.769 15.69 3.67 33.89 1.73
97 98 7.922278 AGCATTATTGTTTATGTGCACCTTATG 59.078 33.333 15.69 4.88 33.89 1.90
98 99 7.920151 GCATTATTGTTTATGTGCACCTTATGA 59.080 33.333 15.69 0.00 32.57 2.15
99 100 9.970395 CATTATTGTTTATGTGCACCTTATGAT 57.030 29.630 15.69 2.05 0.00 2.45
106 107 9.612620 GTTTATGTGCACCTTATGATTATTAGC 57.387 33.333 15.69 0.00 0.00 3.09
107 108 8.916628 TTATGTGCACCTTATGATTATTAGCA 57.083 30.769 15.69 0.00 0.00 3.49
108 109 7.822161 ATGTGCACCTTATGATTATTAGCAA 57.178 32.000 15.69 0.00 0.00 3.91
109 110 7.026631 TGTGCACCTTATGATTATTAGCAAC 57.973 36.000 15.69 0.00 0.00 4.17
110 111 6.601217 TGTGCACCTTATGATTATTAGCAACA 59.399 34.615 15.69 0.00 0.00 3.33
111 112 7.121907 TGTGCACCTTATGATTATTAGCAACAA 59.878 33.333 15.69 0.00 0.00 2.83
112 113 7.645340 GTGCACCTTATGATTATTAGCAACAAG 59.355 37.037 5.22 0.00 0.00 3.16
113 114 7.339212 TGCACCTTATGATTATTAGCAACAAGT 59.661 33.333 0.00 0.00 0.00 3.16
114 115 8.190784 GCACCTTATGATTATTAGCAACAAGTT 58.809 33.333 0.00 0.00 0.00 2.66
119 120 9.710979 TTATGATTATTAGCAACAAGTTTACGC 57.289 29.630 0.00 0.00 0.00 4.42
120 121 7.372451 TGATTATTAGCAACAAGTTTACGCT 57.628 32.000 2.51 2.51 36.72 5.07
121 122 8.481974 TGATTATTAGCAACAAGTTTACGCTA 57.518 30.769 0.00 0.00 34.18 4.26
122 123 9.104965 TGATTATTAGCAACAAGTTTACGCTAT 57.895 29.630 4.86 0.70 35.27 2.97
123 124 9.931210 GATTATTAGCAACAAGTTTACGCTATT 57.069 29.630 4.86 4.74 35.27 1.73
124 125 9.716507 ATTATTAGCAACAAGTTTACGCTATTG 57.283 29.630 4.86 0.00 35.27 1.90
125 126 3.821841 AGCAACAAGTTTACGCTATTGC 58.178 40.909 0.00 0.00 40.92 3.56
126 127 3.502211 AGCAACAAGTTTACGCTATTGCT 59.498 39.130 2.85 2.85 44.74 3.91
127 128 4.693566 AGCAACAAGTTTACGCTATTGCTA 59.306 37.500 6.77 0.00 46.92 3.49
128 129 5.180492 AGCAACAAGTTTACGCTATTGCTAA 59.820 36.000 6.77 0.00 46.92 3.09
129 130 6.027749 GCAACAAGTTTACGCTATTGCTAAT 58.972 36.000 0.00 0.00 38.30 1.73
130 131 7.065324 AGCAACAAGTTTACGCTATTGCTAATA 59.935 33.333 6.77 0.00 46.92 0.98
131 132 7.694784 GCAACAAGTTTACGCTATTGCTAATAA 59.305 33.333 0.00 0.00 38.30 1.40
132 133 9.716507 CAACAAGTTTACGCTATTGCTAATAAT 57.283 29.630 0.00 0.00 36.97 1.28
160 161 9.862371 AAATATCGTAAGGTGATGATCTACATC 57.138 33.333 0.00 0.00 46.13 3.06
199 200 6.925610 TCATAACATGAAATAGCTGACCAC 57.074 37.500 0.00 0.00 36.11 4.16
200 201 6.413892 TCATAACATGAAATAGCTGACCACA 58.586 36.000 0.00 0.00 36.11 4.17
201 202 6.316140 TCATAACATGAAATAGCTGACCACAC 59.684 38.462 0.00 0.00 36.11 3.82
202 203 4.019792 ACATGAAATAGCTGACCACACA 57.980 40.909 0.00 0.00 0.00 3.72
203 204 4.592942 ACATGAAATAGCTGACCACACAT 58.407 39.130 0.00 0.00 0.00 3.21
204 205 5.744171 ACATGAAATAGCTGACCACACATA 58.256 37.500 0.00 0.00 0.00 2.29
205 206 5.586243 ACATGAAATAGCTGACCACACATAC 59.414 40.000 0.00 0.00 0.00 2.39
206 207 5.420725 TGAAATAGCTGACCACACATACT 57.579 39.130 0.00 0.00 0.00 2.12
207 208 5.178061 TGAAATAGCTGACCACACATACTG 58.822 41.667 0.00 0.00 0.00 2.74
208 209 2.672961 TAGCTGACCACACATACTGC 57.327 50.000 0.00 0.00 0.00 4.40
209 210 0.686789 AGCTGACCACACATACTGCA 59.313 50.000 0.00 0.00 0.00 4.41
210 211 1.280133 AGCTGACCACACATACTGCAT 59.720 47.619 0.00 0.00 0.00 3.96
211 212 1.399440 GCTGACCACACATACTGCATG 59.601 52.381 0.00 0.00 40.78 4.06
212 213 2.011947 CTGACCACACATACTGCATGG 58.988 52.381 0.00 0.00 39.13 3.66
213 214 1.350684 TGACCACACATACTGCATGGT 59.649 47.619 5.59 5.59 40.40 3.55
214 215 2.569404 TGACCACACATACTGCATGGTA 59.431 45.455 5.89 0.00 38.55 3.25
215 216 3.198068 GACCACACATACTGCATGGTAG 58.802 50.000 5.89 0.00 38.55 3.18
216 217 2.571653 ACCACACATACTGCATGGTAGT 59.428 45.455 4.07 0.00 37.20 2.73
217 218 2.938451 CCACACATACTGCATGGTAGTG 59.062 50.000 0.00 1.06 39.13 2.74
218 219 3.599343 CACACATACTGCATGGTAGTGT 58.401 45.455 11.82 11.82 39.13 3.55
219 220 4.382577 CCACACATACTGCATGGTAGTGTA 60.383 45.833 14.79 2.88 39.13 2.90
220 221 5.175127 CACACATACTGCATGGTAGTGTAA 58.825 41.667 14.79 0.00 39.13 2.41
221 222 5.291858 CACACATACTGCATGGTAGTGTAAG 59.708 44.000 14.79 2.58 39.13 2.34
222 223 4.811024 CACATACTGCATGGTAGTGTAAGG 59.189 45.833 0.00 0.00 39.13 2.69
223 224 4.469945 ACATACTGCATGGTAGTGTAAGGT 59.530 41.667 0.00 0.00 39.13 3.50
224 225 3.334583 ACTGCATGGTAGTGTAAGGTG 57.665 47.619 0.00 0.00 0.00 4.00
225 226 2.027192 ACTGCATGGTAGTGTAAGGTGG 60.027 50.000 0.00 0.00 0.00 4.61
226 227 1.982226 TGCATGGTAGTGTAAGGTGGT 59.018 47.619 0.00 0.00 0.00 4.16
227 228 3.174779 TGCATGGTAGTGTAAGGTGGTA 58.825 45.455 0.00 0.00 0.00 3.25
228 229 3.778075 TGCATGGTAGTGTAAGGTGGTAT 59.222 43.478 0.00 0.00 0.00 2.73
229 230 4.226394 TGCATGGTAGTGTAAGGTGGTATT 59.774 41.667 0.00 0.00 0.00 1.89
230 231 4.574828 GCATGGTAGTGTAAGGTGGTATTG 59.425 45.833 0.00 0.00 0.00 1.90
231 232 5.628200 GCATGGTAGTGTAAGGTGGTATTGA 60.628 44.000 0.00 0.00 0.00 2.57
232 233 5.410355 TGGTAGTGTAAGGTGGTATTGAC 57.590 43.478 0.00 0.00 0.00 3.18
233 234 5.088730 TGGTAGTGTAAGGTGGTATTGACT 58.911 41.667 0.00 0.00 0.00 3.41
234 235 5.186409 TGGTAGTGTAAGGTGGTATTGACTC 59.814 44.000 0.00 0.00 0.00 3.36
235 236 5.186409 GGTAGTGTAAGGTGGTATTGACTCA 59.814 44.000 0.00 0.00 0.00 3.41
236 237 5.148651 AGTGTAAGGTGGTATTGACTCAC 57.851 43.478 0.00 0.00 0.00 3.51
237 238 4.020485 AGTGTAAGGTGGTATTGACTCACC 60.020 45.833 3.75 3.75 42.64 4.02
240 241 2.902608 AGGTGGTATTGACTCACCTGA 58.097 47.619 12.72 0.00 46.75 3.86
241 242 3.454858 AGGTGGTATTGACTCACCTGAT 58.545 45.455 12.72 0.00 46.75 2.90
242 243 4.620723 AGGTGGTATTGACTCACCTGATA 58.379 43.478 12.72 0.00 46.75 2.15
243 244 4.406003 AGGTGGTATTGACTCACCTGATAC 59.594 45.833 12.72 0.00 46.75 2.24
244 245 4.443034 GGTGGTATTGACTCACCTGATACC 60.443 50.000 9.45 9.45 40.77 2.73
245 246 4.406003 GTGGTATTGACTCACCTGATACCT 59.594 45.833 14.66 0.00 41.65 3.08
246 247 5.030147 TGGTATTGACTCACCTGATACCTT 58.970 41.667 14.66 0.00 41.65 3.50
247 248 5.487488 TGGTATTGACTCACCTGATACCTTT 59.513 40.000 14.66 0.00 41.65 3.11
248 249 6.012858 TGGTATTGACTCACCTGATACCTTTT 60.013 38.462 14.66 0.00 41.65 2.27
249 250 6.539103 GGTATTGACTCACCTGATACCTTTTC 59.461 42.308 9.22 0.00 39.27 2.29
250 251 4.553330 TGACTCACCTGATACCTTTTCC 57.447 45.455 0.00 0.00 0.00 3.13
251 252 3.056107 TGACTCACCTGATACCTTTTCCG 60.056 47.826 0.00 0.00 0.00 4.30
252 253 3.170717 ACTCACCTGATACCTTTTCCGA 58.829 45.455 0.00 0.00 0.00 4.55
253 254 3.195825 ACTCACCTGATACCTTTTCCGAG 59.804 47.826 0.00 0.00 0.00 4.63
254 255 3.170717 TCACCTGATACCTTTTCCGAGT 58.829 45.455 0.00 0.00 0.00 4.18
255 256 4.346730 TCACCTGATACCTTTTCCGAGTA 58.653 43.478 0.00 0.00 0.00 2.59
256 257 4.960469 TCACCTGATACCTTTTCCGAGTAT 59.040 41.667 0.00 0.00 0.00 2.12
257 258 5.050490 CACCTGATACCTTTTCCGAGTATG 58.950 45.833 0.00 0.00 0.00 2.39
258 259 4.960469 ACCTGATACCTTTTCCGAGTATGA 59.040 41.667 0.00 0.00 0.00 2.15
259 260 5.424252 ACCTGATACCTTTTCCGAGTATGAA 59.576 40.000 0.00 0.00 0.00 2.57
260 261 6.099845 ACCTGATACCTTTTCCGAGTATGAAT 59.900 38.462 0.00 0.00 0.00 2.57
261 262 7.289317 ACCTGATACCTTTTCCGAGTATGAATA 59.711 37.037 0.00 0.00 0.00 1.75
262 263 7.599245 CCTGATACCTTTTCCGAGTATGAATAC 59.401 40.741 0.00 0.00 0.00 1.89
263 264 8.014070 TGATACCTTTTCCGAGTATGAATACA 57.986 34.615 3.43 0.00 35.74 2.29
264 265 8.647796 TGATACCTTTTCCGAGTATGAATACAT 58.352 33.333 3.43 0.00 40.16 2.29
328 333 8.725405 ACGAATGTTGTCATACCAAATATACA 57.275 30.769 0.00 0.00 33.49 2.29
382 387 2.361610 CAGCCCGAGCCAACCATT 60.362 61.111 0.00 0.00 41.25 3.16
403 408 7.014422 ACCATTCCAAAAAGTAACCAAATACGA 59.986 33.333 0.00 0.00 0.00 3.43
404 409 7.540745 CCATTCCAAAAAGTAACCAAATACGAG 59.459 37.037 0.00 0.00 0.00 4.18
405 410 6.004408 TCCAAAAAGTAACCAAATACGAGC 57.996 37.500 0.00 0.00 0.00 5.03
406 411 5.048573 TCCAAAAAGTAACCAAATACGAGCC 60.049 40.000 0.00 0.00 0.00 4.70
407 412 5.048294 CCAAAAAGTAACCAAATACGAGCCT 60.048 40.000 0.00 0.00 0.00 4.58
408 413 6.149807 CCAAAAAGTAACCAAATACGAGCCTA 59.850 38.462 0.00 0.00 0.00 3.93
409 414 7.148137 CCAAAAAGTAACCAAATACGAGCCTAT 60.148 37.037 0.00 0.00 0.00 2.57
410 415 7.933215 AAAAGTAACCAAATACGAGCCTATT 57.067 32.000 0.00 0.00 0.00 1.73
411 416 7.933215 AAAGTAACCAAATACGAGCCTATTT 57.067 32.000 0.00 0.00 0.00 1.40
412 417 7.549615 AAGTAACCAAATACGAGCCTATTTC 57.450 36.000 0.00 0.00 0.00 2.17
413 418 6.885922 AGTAACCAAATACGAGCCTATTTCT 58.114 36.000 0.00 0.00 0.00 2.52
414 419 6.985059 AGTAACCAAATACGAGCCTATTTCTC 59.015 38.462 0.00 0.00 0.00 2.87
415 420 5.615925 ACCAAATACGAGCCTATTTCTCT 57.384 39.130 0.00 0.00 0.00 3.10
416 421 5.360591 ACCAAATACGAGCCTATTTCTCTG 58.639 41.667 0.00 0.00 0.00 3.35
417 422 4.212214 CCAAATACGAGCCTATTTCTCTGC 59.788 45.833 0.00 0.00 0.00 4.26
418 423 4.946478 AATACGAGCCTATTTCTCTGCT 57.054 40.909 0.00 0.00 36.62 4.24
419 424 2.593346 ACGAGCCTATTTCTCTGCTG 57.407 50.000 0.00 0.00 33.41 4.41
420 425 2.103373 ACGAGCCTATTTCTCTGCTGA 58.897 47.619 0.00 0.00 33.41 4.26
421 426 2.697751 ACGAGCCTATTTCTCTGCTGAT 59.302 45.455 0.00 0.00 33.41 2.90
422 427 3.133721 ACGAGCCTATTTCTCTGCTGATT 59.866 43.478 0.00 0.00 33.41 2.57
423 428 3.740321 CGAGCCTATTTCTCTGCTGATTC 59.260 47.826 0.00 0.00 33.41 2.52
424 429 4.701765 GAGCCTATTTCTCTGCTGATTCA 58.298 43.478 0.00 0.00 33.41 2.57
425 430 4.450053 AGCCTATTTCTCTGCTGATTCAC 58.550 43.478 0.00 0.00 31.70 3.18
426 431 4.163839 AGCCTATTTCTCTGCTGATTCACT 59.836 41.667 0.00 0.00 31.70 3.41
427 432 5.365025 AGCCTATTTCTCTGCTGATTCACTA 59.635 40.000 0.00 0.00 31.70 2.74
449 454 4.463879 CACGCTCCAGGGCTCCAG 62.464 72.222 0.00 0.00 0.00 3.86
478 483 0.591170 CGCAAAATTCTCCACACCGT 59.409 50.000 0.00 0.00 0.00 4.83
479 484 1.001815 CGCAAAATTCTCCACACCGTT 60.002 47.619 0.00 0.00 0.00 4.44
480 485 2.393764 GCAAAATTCTCCACACCGTTG 58.606 47.619 0.00 0.00 0.00 4.10
481 486 2.393764 CAAAATTCTCCACACCGTTGC 58.606 47.619 0.00 0.00 0.00 4.17
482 487 0.591170 AAATTCTCCACACCGTTGCG 59.409 50.000 0.00 0.00 0.00 4.85
483 488 0.534203 AATTCTCCACACCGTTGCGT 60.534 50.000 0.00 0.00 0.00 5.24
484 489 0.319083 ATTCTCCACACCGTTGCGTA 59.681 50.000 0.00 0.00 0.00 4.42
485 490 0.319083 TTCTCCACACCGTTGCGTAT 59.681 50.000 0.00 0.00 0.00 3.06
486 491 0.389296 TCTCCACACCGTTGCGTATG 60.389 55.000 0.00 0.00 0.00 2.39
487 492 1.966493 CTCCACACCGTTGCGTATGC 61.966 60.000 0.00 0.00 43.20 3.14
505 510 8.350880 GCGTATGCAAATTTGACAAATTTAAC 57.649 30.769 29.34 24.70 46.34 2.01
506 511 7.477112 GCGTATGCAAATTTGACAAATTTAACC 59.523 33.333 29.34 22.02 46.34 2.85
507 512 8.707839 CGTATGCAAATTTGACAAATTTAACCT 58.292 29.630 29.34 21.10 46.34 3.50
537 542 8.393395 ACGAAATCAAATCATAAAATGAACCG 57.607 30.769 0.00 0.00 43.50 4.44
538 543 8.026607 ACGAAATCAAATCATAAAATGAACCGT 58.973 29.630 0.00 0.00 43.50 4.83
539 544 8.523464 CGAAATCAAATCATAAAATGAACCGTC 58.477 33.333 0.00 0.00 43.50 4.79
540 545 8.702163 AAATCAAATCATAAAATGAACCGTCC 57.298 30.769 0.00 0.00 43.50 4.79
541 546 5.874831 TCAAATCATAAAATGAACCGTCCG 58.125 37.500 0.00 0.00 43.50 4.79
542 547 5.413213 TCAAATCATAAAATGAACCGTCCGT 59.587 36.000 0.00 0.00 43.50 4.69
543 548 4.875544 ATCATAAAATGAACCGTCCGTG 57.124 40.909 0.00 0.00 43.50 4.94
544 549 3.927854 TCATAAAATGAACCGTCCGTGA 58.072 40.909 0.00 0.00 36.11 4.35
545 550 4.316645 TCATAAAATGAACCGTCCGTGAA 58.683 39.130 0.00 0.00 36.11 3.18
546 551 4.755629 TCATAAAATGAACCGTCCGTGAAA 59.244 37.500 0.00 0.00 36.11 2.69
547 552 3.343380 AAAATGAACCGTCCGTGAAAC 57.657 42.857 0.00 0.00 0.00 2.78
548 553 2.249844 AATGAACCGTCCGTGAAACT 57.750 45.000 0.00 0.00 31.75 2.66
549 554 3.389925 AATGAACCGTCCGTGAAACTA 57.610 42.857 0.00 0.00 31.75 2.24
550 555 3.604875 ATGAACCGTCCGTGAAACTAT 57.395 42.857 0.00 0.00 31.75 2.12
551 556 3.389925 TGAACCGTCCGTGAAACTATT 57.610 42.857 0.00 0.00 31.75 1.73
552 557 3.731089 TGAACCGTCCGTGAAACTATTT 58.269 40.909 0.00 0.00 31.75 1.40
553 558 3.742369 TGAACCGTCCGTGAAACTATTTC 59.258 43.478 0.00 0.00 40.08 2.17
554 559 3.389925 ACCGTCCGTGAAACTATTTCA 57.610 42.857 0.00 0.00 46.68 2.69
561 566 1.803334 TGAAACTATTTCACGCGGCT 58.197 45.000 12.47 0.00 44.21 5.52
562 567 1.463056 TGAAACTATTTCACGCGGCTG 59.537 47.619 12.47 0.00 44.21 4.85
563 568 1.730064 GAAACTATTTCACGCGGCTGA 59.270 47.619 12.47 2.44 39.45 4.26
564 569 1.076332 AACTATTTCACGCGGCTGAC 58.924 50.000 12.47 0.00 0.00 3.51
565 570 0.246635 ACTATTTCACGCGGCTGACT 59.753 50.000 12.47 0.00 0.00 3.41
566 571 1.337823 ACTATTTCACGCGGCTGACTT 60.338 47.619 12.47 0.00 0.00 3.01
567 572 1.732259 CTATTTCACGCGGCTGACTTT 59.268 47.619 12.47 0.00 0.00 2.66
568 573 0.951558 ATTTCACGCGGCTGACTTTT 59.048 45.000 12.47 0.00 0.00 2.27
569 574 0.736053 TTTCACGCGGCTGACTTTTT 59.264 45.000 12.47 0.00 0.00 1.94
583 588 4.220413 TTTTTGTGTGACGCCCGA 57.780 50.000 0.00 0.00 0.00 5.14
584 589 1.722677 TTTTTGTGTGACGCCCGAC 59.277 52.632 0.00 0.00 0.00 4.79
585 590 1.025113 TTTTTGTGTGACGCCCGACA 61.025 50.000 0.00 0.00 0.00 4.35
586 591 1.707239 TTTTGTGTGACGCCCGACAC 61.707 55.000 14.47 14.47 42.40 3.67
587 592 4.934942 TGTGTGACGCCCGACACG 62.935 66.667 15.80 0.00 44.55 4.49
588 593 4.634133 GTGTGACGCCCGACACGA 62.634 66.667 15.80 5.46 42.06 4.35
589 594 3.902086 TGTGACGCCCGACACGAA 61.902 61.111 15.80 0.31 42.06 3.85
590 595 3.103911 GTGACGCCCGACACGAAG 61.104 66.667 7.43 0.00 32.16 3.79
591 596 4.351938 TGACGCCCGACACGAAGG 62.352 66.667 0.00 0.00 0.00 3.46
599 604 3.712881 GACACGAAGGCGCCACAC 61.713 66.667 31.54 17.81 42.48 3.82
600 605 4.235762 ACACGAAGGCGCCACACT 62.236 61.111 31.54 9.96 42.48 3.55
601 606 2.048597 CACGAAGGCGCCACACTA 60.049 61.111 31.54 0.00 42.48 2.74
602 607 2.048503 ACGAAGGCGCCACACTAC 60.049 61.111 31.54 11.50 42.48 2.73
603 608 2.048597 CGAAGGCGCCACACTACA 60.049 61.111 31.54 0.00 0.00 2.74
604 609 2.380410 CGAAGGCGCCACACTACAC 61.380 63.158 31.54 8.98 0.00 2.90
605 610 1.004918 GAAGGCGCCACACTACACT 60.005 57.895 31.54 0.00 0.00 3.55
606 611 1.291877 GAAGGCGCCACACTACACTG 61.292 60.000 31.54 0.00 0.00 3.66
607 612 2.030562 GGCGCCACACTACACTGT 59.969 61.111 24.80 0.00 0.00 3.55
608 613 2.317609 GGCGCCACACTACACTGTG 61.318 63.158 24.80 6.19 41.19 3.66
609 614 2.954753 GCGCCACACTACACTGTGC 61.955 63.158 7.90 0.00 40.33 4.57
610 615 1.594021 CGCCACACTACACTGTGCA 60.594 57.895 7.90 0.00 40.33 4.57
611 616 1.157257 CGCCACACTACACTGTGCAA 61.157 55.000 7.90 0.00 40.33 4.08
612 617 0.307760 GCCACACTACACTGTGCAAC 59.692 55.000 7.90 0.00 40.33 4.17
613 618 0.581529 CCACACTACACTGTGCAACG 59.418 55.000 7.90 0.00 42.39 4.10
614 619 0.042188 CACACTACACTGTGCAACGC 60.042 55.000 7.90 0.00 42.39 4.84
615 620 1.157870 ACACTACACTGTGCAACGCC 61.158 55.000 7.90 0.00 42.39 5.68
616 621 0.880278 CACTACACTGTGCAACGCCT 60.880 55.000 7.90 0.00 42.39 5.52
617 622 0.600255 ACTACACTGTGCAACGCCTC 60.600 55.000 7.90 0.00 42.39 4.70
618 623 0.599991 CTACACTGTGCAACGCCTCA 60.600 55.000 7.90 0.00 42.39 3.86
619 624 0.878523 TACACTGTGCAACGCCTCAC 60.879 55.000 7.90 0.00 42.39 3.51
620 625 2.179547 CACTGTGCAACGCCTCACA 61.180 57.895 0.00 4.54 42.39 3.58
622 627 2.503546 TGTGCAACGCCTCACAGA 59.496 55.556 0.00 0.00 42.39 3.41
623 628 1.071299 TGTGCAACGCCTCACAGAT 59.929 52.632 0.00 0.00 42.39 2.90
624 629 0.320050 TGTGCAACGCCTCACAGATA 59.680 50.000 0.00 0.00 42.39 1.98
625 630 1.002366 GTGCAACGCCTCACAGATAG 58.998 55.000 0.00 0.00 33.63 2.08
626 631 0.108186 TGCAACGCCTCACAGATAGG 60.108 55.000 0.00 0.00 37.17 2.57
632 637 3.875838 CCTCACAGATAGGCGCTAC 57.124 57.895 7.64 0.00 0.00 3.58
633 638 1.032794 CCTCACAGATAGGCGCTACA 58.967 55.000 7.64 0.00 0.00 2.74
634 639 1.269309 CCTCACAGATAGGCGCTACAC 60.269 57.143 7.64 0.00 0.00 2.90
636 641 0.595053 CACAGATAGGCGCTACACGG 60.595 60.000 7.64 0.58 43.93 4.94
660 665 4.429212 TCGCACCCGTGTGATCCG 62.429 66.667 0.90 0.00 45.76 4.18
661 666 4.429212 CGCACCCGTGTGATCCGA 62.429 66.667 0.90 0.00 45.76 4.55
662 667 2.047655 GCACCCGTGTGATCCGAA 60.048 61.111 0.90 0.00 45.76 4.30
663 668 1.669760 GCACCCGTGTGATCCGAAA 60.670 57.895 0.90 0.00 45.76 3.46
664 669 1.231958 GCACCCGTGTGATCCGAAAA 61.232 55.000 0.90 0.00 45.76 2.29
665 670 1.448985 CACCCGTGTGATCCGAAAAT 58.551 50.000 0.00 0.00 45.76 1.82
666 671 1.810151 CACCCGTGTGATCCGAAAATT 59.190 47.619 0.00 0.00 45.76 1.82
667 672 3.004171 CACCCGTGTGATCCGAAAATTA 58.996 45.455 0.00 0.00 45.76 1.40
668 673 3.004862 ACCCGTGTGATCCGAAAATTAC 58.995 45.455 0.00 0.00 0.00 1.89
669 674 3.267483 CCCGTGTGATCCGAAAATTACT 58.733 45.455 0.00 0.00 0.00 2.24
670 675 4.081531 ACCCGTGTGATCCGAAAATTACTA 60.082 41.667 0.00 0.00 0.00 1.82
671 676 4.871557 CCCGTGTGATCCGAAAATTACTAA 59.128 41.667 0.00 0.00 0.00 2.24
672 677 5.006358 CCCGTGTGATCCGAAAATTACTAAG 59.994 44.000 0.00 0.00 0.00 2.18
673 678 5.579511 CCGTGTGATCCGAAAATTACTAAGT 59.420 40.000 0.00 0.00 0.00 2.24
674 679 6.237755 CCGTGTGATCCGAAAATTACTAAGTC 60.238 42.308 0.00 0.00 0.00 3.01
675 680 6.309494 CGTGTGATCCGAAAATTACTAAGTCA 59.691 38.462 0.00 0.00 0.00 3.41
676 681 7.462856 CGTGTGATCCGAAAATTACTAAGTCAG 60.463 40.741 0.00 0.00 0.00 3.51
677 682 7.331193 GTGTGATCCGAAAATTACTAAGTCAGT 59.669 37.037 0.00 0.00 41.62 3.41
678 683 7.330946 TGTGATCCGAAAATTACTAAGTCAGTG 59.669 37.037 0.00 0.00 38.24 3.66
679 684 7.331193 GTGATCCGAAAATTACTAAGTCAGTGT 59.669 37.037 0.00 0.00 38.24 3.55
680 685 7.330946 TGATCCGAAAATTACTAAGTCAGTGTG 59.669 37.037 0.00 0.00 38.24 3.82
681 686 5.407387 TCCGAAAATTACTAAGTCAGTGTGC 59.593 40.000 0.00 0.00 38.24 4.57
682 687 5.178623 CCGAAAATTACTAAGTCAGTGTGCA 59.821 40.000 0.00 0.00 38.24 4.57
683 688 6.299604 CGAAAATTACTAAGTCAGTGTGCAG 58.700 40.000 0.00 0.00 38.24 4.41
684 689 5.613358 AAATTACTAAGTCAGTGTGCAGC 57.387 39.130 0.00 0.00 38.24 5.25
685 690 2.347697 TACTAAGTCAGTGTGCAGCG 57.652 50.000 0.00 0.00 38.24 5.18
686 691 0.946221 ACTAAGTCAGTGTGCAGCGC 60.946 55.000 0.00 0.00 35.62 5.92
687 692 1.630244 CTAAGTCAGTGTGCAGCGCC 61.630 60.000 2.29 0.00 0.00 6.53
688 693 2.099652 TAAGTCAGTGTGCAGCGCCT 62.100 55.000 2.29 0.00 0.00 5.52
689 694 3.720193 GTCAGTGTGCAGCGCCTG 61.720 66.667 2.29 14.85 34.12 4.85
690 695 3.927548 TCAGTGTGCAGCGCCTGA 61.928 61.111 18.04 18.04 32.44 3.86
691 696 3.420606 CAGTGTGCAGCGCCTGAG 61.421 66.667 15.59 0.00 32.44 3.35
692 697 3.619767 AGTGTGCAGCGCCTGAGA 61.620 61.111 2.29 0.00 32.44 3.27
693 698 3.117171 GTGTGCAGCGCCTGAGAG 61.117 66.667 2.29 0.00 32.44 3.20
703 708 3.150335 CCTGAGAGCTAGGCGCCA 61.150 66.667 31.54 14.00 40.39 5.69
704 709 2.105930 CTGAGAGCTAGGCGCCAC 59.894 66.667 31.54 17.93 40.39 5.01
705 710 2.679996 TGAGAGCTAGGCGCCACA 60.680 61.111 31.54 15.42 40.39 4.17
706 711 2.202810 GAGAGCTAGGCGCCACAC 60.203 66.667 31.54 17.11 40.39 3.82
707 712 2.681778 AGAGCTAGGCGCCACACT 60.682 61.111 31.54 21.99 40.39 3.55
708 713 1.379977 AGAGCTAGGCGCCACACTA 60.380 57.895 31.54 11.42 40.39 2.74
709 714 0.757188 AGAGCTAGGCGCCACACTAT 60.757 55.000 31.54 16.52 40.39 2.12
710 715 0.959553 GAGCTAGGCGCCACACTATA 59.040 55.000 31.54 10.17 40.39 1.31
711 716 0.674534 AGCTAGGCGCCACACTATAC 59.325 55.000 31.54 8.64 40.39 1.47
712 717 0.387929 GCTAGGCGCCACACTATACA 59.612 55.000 31.54 0.33 0.00 2.29
713 718 1.603172 GCTAGGCGCCACACTATACAG 60.603 57.143 31.54 11.37 0.00 2.74
714 719 1.681793 CTAGGCGCCACACTATACAGT 59.318 52.381 31.54 5.27 34.42 3.55
725 730 2.535984 CACTATACAGTGCAACGCTAGC 59.464 50.000 4.06 4.06 45.44 3.42
726 731 2.427453 ACTATACAGTGCAACGCTAGCT 59.573 45.455 13.93 0.00 45.86 3.32
727 732 1.927895 ATACAGTGCAACGCTAGCTC 58.072 50.000 13.93 0.00 45.86 4.09
728 733 0.108804 TACAGTGCAACGCTAGCTCC 60.109 55.000 13.93 0.00 45.86 4.70
729 734 1.079543 CAGTGCAACGCTAGCTCCT 60.080 57.895 13.93 0.00 45.86 3.69
730 735 0.173481 CAGTGCAACGCTAGCTCCTA 59.827 55.000 13.93 0.00 45.86 2.94
731 736 0.457851 AGTGCAACGCTAGCTCCTAG 59.542 55.000 13.93 0.00 45.86 3.02
732 737 0.528684 GTGCAACGCTAGCTCCTAGG 60.529 60.000 13.93 0.82 34.88 3.02
733 738 1.592939 GCAACGCTAGCTCCTAGGC 60.593 63.158 13.93 4.17 34.88 3.93
734 739 1.816537 CAACGCTAGCTCCTAGGCA 59.183 57.895 13.93 0.00 34.88 4.75
735 740 0.390860 CAACGCTAGCTCCTAGGCAT 59.609 55.000 13.93 0.00 34.88 4.40
736 741 1.123928 AACGCTAGCTCCTAGGCATT 58.876 50.000 13.93 0.00 34.88 3.56
737 742 0.390860 ACGCTAGCTCCTAGGCATTG 59.609 55.000 13.93 0.00 34.88 2.82
738 743 0.948141 CGCTAGCTCCTAGGCATTGC 60.948 60.000 13.93 0.00 34.88 3.56
739 744 0.107456 GCTAGCTCCTAGGCATTGCA 59.893 55.000 7.70 0.00 34.88 4.08
740 745 1.876322 CTAGCTCCTAGGCATTGCAC 58.124 55.000 11.39 0.00 31.03 4.57
741 746 1.415659 CTAGCTCCTAGGCATTGCACT 59.584 52.381 11.39 7.82 31.03 4.40
742 747 1.500474 AGCTCCTAGGCATTGCACTA 58.500 50.000 11.39 8.54 34.17 2.74
743 748 1.415659 AGCTCCTAGGCATTGCACTAG 59.584 52.381 19.27 19.27 37.12 2.57
744 749 1.139853 GCTCCTAGGCATTGCACTAGT 59.860 52.381 22.05 0.00 35.93 2.57
745 750 2.831333 CTCCTAGGCATTGCACTAGTG 58.169 52.381 18.93 18.93 35.93 2.74
755 760 2.262603 CACTAGTGCAGCGCCTGA 59.737 61.111 10.54 0.00 32.44 3.86
756 761 1.808799 CACTAGTGCAGCGCCTGAG 60.809 63.158 10.54 0.34 32.44 3.35
757 762 1.979155 ACTAGTGCAGCGCCTGAGA 60.979 57.895 2.29 0.00 32.44 3.27
758 763 1.226916 CTAGTGCAGCGCCTGAGAG 60.227 63.158 2.29 0.00 32.44 3.20
759 764 1.943116 CTAGTGCAGCGCCTGAGAGT 61.943 60.000 2.29 0.00 32.44 3.24
760 765 1.536073 TAGTGCAGCGCCTGAGAGTT 61.536 55.000 2.29 0.00 32.44 3.01
761 766 1.079819 GTGCAGCGCCTGAGAGTTA 60.080 57.895 2.29 0.00 32.44 2.24
762 767 1.080995 GTGCAGCGCCTGAGAGTTAG 61.081 60.000 2.29 0.00 32.44 2.34
763 768 1.520342 GCAGCGCCTGAGAGTTAGG 60.520 63.158 2.29 0.00 38.39 2.69
768 773 3.298958 CCTGAGAGTTAGGCGCCA 58.701 61.111 31.54 12.31 0.00 5.69
769 774 1.153549 CCTGAGAGTTAGGCGCCAC 60.154 63.158 31.54 19.69 0.00 5.01
770 775 1.517257 CTGAGAGTTAGGCGCCACG 60.517 63.158 31.54 1.54 0.00 4.94
771 776 2.202756 GAGAGTTAGGCGCCACGG 60.203 66.667 31.54 0.00 0.00 4.94
772 777 2.678934 AGAGTTAGGCGCCACGGA 60.679 61.111 31.54 7.86 0.00 4.69
773 778 2.017559 GAGAGTTAGGCGCCACGGAT 62.018 60.000 31.54 10.27 0.00 4.18
774 779 1.591863 GAGTTAGGCGCCACGGATC 60.592 63.158 31.54 15.75 0.00 3.36
775 780 2.185867 GTTAGGCGCCACGGATCA 59.814 61.111 31.54 0.02 0.00 2.92
776 781 1.883084 GTTAGGCGCCACGGATCAG 60.883 63.158 31.54 0.00 0.00 2.90
777 782 3.733344 TTAGGCGCCACGGATCAGC 62.733 63.158 31.54 0.00 0.00 4.26
787 792 3.813596 GGATCAGCCGCGTGAAAT 58.186 55.556 4.92 0.00 0.00 2.17
788 793 2.986311 GGATCAGCCGCGTGAAATA 58.014 52.632 4.92 0.00 0.00 1.40
789 794 0.861837 GGATCAGCCGCGTGAAATAG 59.138 55.000 4.92 0.00 0.00 1.73
790 795 1.571919 GATCAGCCGCGTGAAATAGT 58.428 50.000 4.92 0.00 0.00 2.12
791 796 1.933853 GATCAGCCGCGTGAAATAGTT 59.066 47.619 4.92 0.00 0.00 2.24
792 797 1.803334 TCAGCCGCGTGAAATAGTTT 58.197 45.000 4.92 0.00 0.00 2.66
793 798 1.730064 TCAGCCGCGTGAAATAGTTTC 59.270 47.619 4.92 0.00 40.08 2.78
794 799 1.463056 CAGCCGCGTGAAATAGTTTCA 59.537 47.619 4.92 1.24 46.68 2.69
812 817 7.206981 AGTTTCATGGACAGTTTATTCTGTG 57.793 36.000 4.06 0.00 46.81 3.66
813 818 6.998074 AGTTTCATGGACAGTTTATTCTGTGA 59.002 34.615 4.06 0.00 46.81 3.58
814 819 7.667219 AGTTTCATGGACAGTTTATTCTGTGAT 59.333 33.333 4.06 0.00 46.81 3.06
815 820 8.299570 GTTTCATGGACAGTTTATTCTGTGATT 58.700 33.333 4.06 0.00 46.81 2.57
816 821 8.408043 TTCATGGACAGTTTATTCTGTGATTT 57.592 30.769 4.06 0.00 46.81 2.17
817 822 7.819644 TCATGGACAGTTTATTCTGTGATTTG 58.180 34.615 4.06 0.00 46.81 2.32
818 823 7.665145 TCATGGACAGTTTATTCTGTGATTTGA 59.335 33.333 4.06 0.78 46.81 2.69
819 824 8.464404 CATGGACAGTTTATTCTGTGATTTGAT 58.536 33.333 4.06 0.00 46.81 2.57
820 825 8.408043 TGGACAGTTTATTCTGTGATTTGATT 57.592 30.769 4.06 0.00 46.81 2.57
821 826 8.859090 TGGACAGTTTATTCTGTGATTTGATTT 58.141 29.630 4.06 0.00 46.81 2.17
822 827 9.132521 GGACAGTTTATTCTGTGATTTGATTTG 57.867 33.333 4.06 0.00 46.81 2.32
823 828 9.132521 GACAGTTTATTCTGTGATTTGATTTGG 57.867 33.333 4.06 0.00 46.81 3.28
824 829 8.641541 ACAGTTTATTCTGTGATTTGATTTGGT 58.358 29.630 0.00 0.00 45.40 3.67
825 830 9.132521 CAGTTTATTCTGTGATTTGATTTGGTC 57.867 33.333 0.00 0.00 0.00 4.02
826 831 9.082313 AGTTTATTCTGTGATTTGATTTGGTCT 57.918 29.630 0.00 0.00 0.00 3.85
830 835 8.585471 ATTCTGTGATTTGATTTGGTCTATGT 57.415 30.769 0.00 0.00 0.00 2.29
831 836 7.381766 TCTGTGATTTGATTTGGTCTATGTG 57.618 36.000 0.00 0.00 0.00 3.21
832 837 6.942005 TCTGTGATTTGATTTGGTCTATGTGT 59.058 34.615 0.00 0.00 0.00 3.72
833 838 7.119699 TCTGTGATTTGATTTGGTCTATGTGTC 59.880 37.037 0.00 0.00 0.00 3.67
834 839 6.714356 TGTGATTTGATTTGGTCTATGTGTCA 59.286 34.615 0.00 0.00 0.00 3.58
835 840 7.230309 TGTGATTTGATTTGGTCTATGTGTCAA 59.770 33.333 0.00 0.00 0.00 3.18
836 841 8.081633 GTGATTTGATTTGGTCTATGTGTCAAA 58.918 33.333 0.00 0.00 38.14 2.69
837 842 8.805175 TGATTTGATTTGGTCTATGTGTCAAAT 58.195 29.630 9.41 9.41 43.48 2.32
838 843 9.643693 GATTTGATTTGGTCTATGTGTCAAATT 57.356 29.630 10.57 0.00 41.90 1.82
840 845 8.815141 TTGATTTGGTCTATGTGTCAAATTTG 57.185 30.769 12.15 12.15 39.15 2.32
841 846 7.950512 TGATTTGGTCTATGTGTCAAATTTGT 58.049 30.769 17.47 0.93 39.15 2.83
842 847 8.081633 TGATTTGGTCTATGTGTCAAATTTGTC 58.918 33.333 17.47 12.75 39.15 3.18
843 848 6.951062 TTGGTCTATGTGTCAAATTTGTCA 57.049 33.333 17.47 15.21 0.00 3.58
844 849 6.951062 TGGTCTATGTGTCAAATTTGTCAA 57.049 33.333 17.72 10.05 0.00 3.18
845 850 7.340122 TGGTCTATGTGTCAAATTTGTCAAA 57.660 32.000 17.72 13.96 0.00 2.69
846 851 7.950512 TGGTCTATGTGTCAAATTTGTCAAAT 58.049 30.769 20.21 20.21 30.98 2.32
847 852 8.420222 TGGTCTATGTGTCAAATTTGTCAAATT 58.580 29.630 21.14 16.26 42.62 1.82
859 864 4.715892 CAAATTTGCCGCCGCCGT 62.716 61.111 5.01 0.00 0.00 5.68
860 865 3.056938 AAATTTGCCGCCGCCGTA 61.057 55.556 0.00 0.00 0.00 4.02
887 894 1.406751 CCACCATCCACATTCTACGCA 60.407 52.381 0.00 0.00 0.00 5.24
897 904 0.460284 ATTCTACGCAGCCCTCAACG 60.460 55.000 0.00 0.00 0.00 4.10
899 906 1.080093 CTACGCAGCCCTCAACGAA 60.080 57.895 0.00 0.00 0.00 3.85
901 908 0.249953 TACGCAGCCCTCAACGAAAA 60.250 50.000 0.00 0.00 0.00 2.29
902 909 0.889186 ACGCAGCCCTCAACGAAAAT 60.889 50.000 0.00 0.00 0.00 1.82
938 948 4.867599 CGCCGGCGACTCCTAACC 62.868 72.222 44.86 0.00 42.83 2.85
939 949 4.525949 GCCGGCGACTCCTAACCC 62.526 72.222 12.58 0.00 0.00 4.11
940 950 2.758737 CCGGCGACTCCTAACCCT 60.759 66.667 9.30 0.00 0.00 4.34
941 951 2.783288 CCGGCGACTCCTAACCCTC 61.783 68.421 9.30 0.00 0.00 4.30
942 952 1.753463 CGGCGACTCCTAACCCTCT 60.753 63.158 0.00 0.00 0.00 3.69
943 953 1.817209 GGCGACTCCTAACCCTCTG 59.183 63.158 0.00 0.00 0.00 3.35
944 954 1.142097 GCGACTCCTAACCCTCTGC 59.858 63.158 0.00 0.00 0.00 4.26
945 955 1.605058 GCGACTCCTAACCCTCTGCA 61.605 60.000 0.00 0.00 0.00 4.41
946 956 0.173708 CGACTCCTAACCCTCTGCAC 59.826 60.000 0.00 0.00 0.00 4.57
947 957 0.537653 GACTCCTAACCCTCTGCACC 59.462 60.000 0.00 0.00 0.00 5.01
948 958 0.178903 ACTCCTAACCCTCTGCACCA 60.179 55.000 0.00 0.00 0.00 4.17
949 959 0.984230 CTCCTAACCCTCTGCACCAA 59.016 55.000 0.00 0.00 0.00 3.67
984 994 4.473520 CTCTGCGCCAATCCGGGT 62.474 66.667 4.18 0.00 34.06 5.28
985 995 4.467084 TCTGCGCCAATCCGGGTC 62.467 66.667 4.18 0.00 34.06 4.46
1016 1026 1.829533 CCATGGAAATGGAGCCGGG 60.830 63.158 5.56 0.00 44.39 5.73
1020 1030 4.796495 GAAATGGAGCCGGGCGGT 62.796 66.667 14.39 0.00 37.65 5.68
1021 1031 4.796495 AAATGGAGCCGGGCGGTC 62.796 66.667 14.39 6.54 38.32 4.79
1037 1047 2.352519 GCGGTCCTAGTTCGAAGAAAGT 60.353 50.000 0.00 0.00 45.90 2.66
1038 1048 3.860002 GCGGTCCTAGTTCGAAGAAAGTT 60.860 47.826 0.00 0.00 45.90 2.66
1043 1053 6.585702 GGTCCTAGTTCGAAGAAAGTTAAGTC 59.414 42.308 0.00 0.00 45.90 3.01
1044 1054 7.144000 GTCCTAGTTCGAAGAAAGTTAAGTCA 58.856 38.462 0.00 0.00 45.90 3.41
1054 1064 1.373748 GTTAAGTCAGCGGCCGTCA 60.374 57.895 28.70 7.98 0.00 4.35
1127 1137 3.721706 CCCCTGTCTGGACCCTGC 61.722 72.222 0.00 0.00 38.35 4.85
1128 1138 2.930019 CCCTGTCTGGACCCTGCA 60.930 66.667 0.00 0.00 38.35 4.41
1129 1139 2.667418 CCTGTCTGGACCCTGCAG 59.333 66.667 6.78 6.78 37.15 4.41
1130 1140 1.915266 CCTGTCTGGACCCTGCAGA 60.915 63.158 17.39 0.00 42.67 4.26
1131 1141 1.595882 CTGTCTGGACCCTGCAGAG 59.404 63.158 17.39 3.79 45.49 3.35
1132 1142 0.902048 CTGTCTGGACCCTGCAGAGA 60.902 60.000 17.39 6.63 45.49 3.10
1133 1143 1.188219 TGTCTGGACCCTGCAGAGAC 61.188 60.000 17.39 19.18 45.49 3.36
1134 1144 1.979155 TCTGGACCCTGCAGAGACG 60.979 63.158 17.39 1.69 39.98 4.18
1135 1145 3.655810 CTGGACCCTGCAGAGACGC 62.656 68.421 17.39 0.00 38.14 5.19
1136 1146 4.459089 GGACCCTGCAGAGACGCC 62.459 72.222 17.39 5.30 0.00 5.68
1137 1147 4.803426 GACCCTGCAGAGACGCCG 62.803 72.222 17.39 0.00 0.00 6.46
1499 1538 1.728971 GTTCTGCCATGTCTCGAACTG 59.271 52.381 0.00 0.00 33.18 3.16
1560 1599 1.604755 TCCACATTCCGTTTTTCACCG 59.395 47.619 0.00 0.00 0.00 4.94
1725 1767 1.679944 GCCTTGGAGTGCTTGCTGATA 60.680 52.381 0.00 0.00 0.00 2.15
1745 1787 6.953101 TGATATACTACAGCTTTGGTTTCCA 58.047 36.000 0.00 0.00 0.00 3.53
1752 1794 3.892200 CTTTGGTTTCCAATGCGCT 57.108 47.368 9.73 0.00 43.55 5.92
1839 1881 0.108424 AGACAGATGAGCCGCAGTTC 60.108 55.000 0.00 0.00 0.00 3.01
2092 2202 6.992715 ACTTCTGTATGCTAGTGTTGTCTTTT 59.007 34.615 0.00 0.00 0.00 2.27
2289 2399 2.958355 TGGTTTTCAGCTCCTCTTTTGG 59.042 45.455 0.00 0.00 0.00 3.28
2305 2415 0.108472 TTGGATCTGCTCGTGCTCTG 60.108 55.000 11.19 1.64 40.48 3.35
2312 2422 2.386660 GCTCGTGCTCTGAAGTGGC 61.387 63.158 1.41 0.00 36.03 5.01
2414 2527 3.887110 TCAAGTGTCTTGACCTTCGTCTA 59.113 43.478 7.92 0.00 39.94 2.59
2434 2547 7.535489 GTCTAAAGACGGTAGTTATGCAATT 57.465 36.000 0.00 0.00 35.12 2.32
2522 2635 6.145535 GGAGTTGATGTCATTCAAAGTTGAC 58.854 40.000 0.00 0.00 42.05 3.18
2565 2678 0.874390 TTTAGCAGAACAGCGCAAGG 59.126 50.000 11.47 0.14 40.15 3.61
2621 2734 4.588278 CTCGGTTTCACTTTCAAACTGAC 58.412 43.478 3.25 0.00 41.93 3.51
2690 2803 5.751990 GGATTTAAGTGATCCGTTCGTATGT 59.248 40.000 0.00 0.00 34.24 2.29
2694 2807 3.703420 AGTGATCCGTTCGTATGTAAGC 58.297 45.455 0.00 0.00 0.00 3.09
2736 4378 6.273825 GTCTGTTGAGTAGTCTTTCTTGACA 58.726 40.000 0.00 0.00 39.27 3.58
2861 4798 4.273480 ACAAACACAGCTAGCTTGTAGTTG 59.727 41.667 23.72 24.06 32.96 3.16
2900 4842 4.427312 GAGGAATTTAAGCTGCATGGTTG 58.573 43.478 1.02 0.00 37.56 3.77
2914 4856 0.535553 TGGTTGCTCAAACGGGGTAC 60.536 55.000 0.00 0.00 39.91 3.34
2950 4892 2.745100 ATGGTCTGCTGCTGCACG 60.745 61.111 14.93 10.88 45.31 5.34
2971 4913 3.319198 AGCGTGGACAACCGGGAT 61.319 61.111 6.32 0.00 39.42 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.277142 AGTTGCGGTTAGGGATAAAGG 57.723 47.619 0.00 0.00 0.00 3.11
1 2 4.514401 AGAAGTTGCGGTTAGGGATAAAG 58.486 43.478 0.00 0.00 0.00 1.85
2 3 4.563140 AGAAGTTGCGGTTAGGGATAAA 57.437 40.909 0.00 0.00 0.00 1.40
3 4 4.563140 AAGAAGTTGCGGTTAGGGATAA 57.437 40.909 0.00 0.00 0.00 1.75
4 5 5.881923 ATAAGAAGTTGCGGTTAGGGATA 57.118 39.130 0.00 0.00 0.00 2.59
5 6 4.772886 ATAAGAAGTTGCGGTTAGGGAT 57.227 40.909 0.00 0.00 0.00 3.85
6 7 4.563140 AATAAGAAGTTGCGGTTAGGGA 57.437 40.909 0.00 0.00 0.00 4.20
7 8 4.674362 GCAAATAAGAAGTTGCGGTTAGGG 60.674 45.833 0.00 0.00 45.52 3.53
8 9 4.412207 GCAAATAAGAAGTTGCGGTTAGG 58.588 43.478 0.00 0.00 45.52 2.69
16 17 7.096230 CCAAAGTAAACCGCAAATAAGAAGTTG 60.096 37.037 0.00 0.00 33.85 3.16
17 18 6.921307 CCAAAGTAAACCGCAAATAAGAAGTT 59.079 34.615 0.00 0.00 0.00 2.66
18 19 6.040054 ACCAAAGTAAACCGCAAATAAGAAGT 59.960 34.615 0.00 0.00 0.00 3.01
19 20 6.443792 ACCAAAGTAAACCGCAAATAAGAAG 58.556 36.000 0.00 0.00 0.00 2.85
20 21 6.039493 TGACCAAAGTAAACCGCAAATAAGAA 59.961 34.615 0.00 0.00 0.00 2.52
21 22 5.531659 TGACCAAAGTAAACCGCAAATAAGA 59.468 36.000 0.00 0.00 0.00 2.10
22 23 5.764131 TGACCAAAGTAAACCGCAAATAAG 58.236 37.500 0.00 0.00 0.00 1.73
23 24 5.769484 TGACCAAAGTAAACCGCAAATAA 57.231 34.783 0.00 0.00 0.00 1.40
24 25 5.769484 TTGACCAAAGTAAACCGCAAATA 57.231 34.783 0.00 0.00 0.00 1.40
25 26 4.657436 TTGACCAAAGTAAACCGCAAAT 57.343 36.364 0.00 0.00 0.00 2.32
26 27 4.657436 ATTGACCAAAGTAAACCGCAAA 57.343 36.364 0.00 0.00 0.00 3.68
27 28 4.098044 TCAATTGACCAAAGTAAACCGCAA 59.902 37.500 3.38 0.00 0.00 4.85
28 29 3.632604 TCAATTGACCAAAGTAAACCGCA 59.367 39.130 3.38 0.00 0.00 5.69
29 30 3.978855 GTCAATTGACCAAAGTAAACCGC 59.021 43.478 25.26 0.00 39.07 5.68
42 43 5.125100 TGATCTTTGCAAGGTCAATTGAC 57.875 39.130 27.16 27.16 45.24 3.18
49 50 5.049129 GCTATGGTATGATCTTTGCAAGGTC 60.049 44.000 8.56 5.45 39.15 3.85
50 51 4.823989 GCTATGGTATGATCTTTGCAAGGT 59.176 41.667 8.56 0.00 0.00 3.50
51 52 4.823442 TGCTATGGTATGATCTTTGCAAGG 59.177 41.667 1.35 1.35 0.00 3.61
52 53 6.570672 ATGCTATGGTATGATCTTTGCAAG 57.429 37.500 0.00 0.00 0.00 4.01
53 54 6.964807 AATGCTATGGTATGATCTTTGCAA 57.035 33.333 0.00 0.00 0.00 4.08
54 55 8.517056 CAATAATGCTATGGTATGATCTTTGCA 58.483 33.333 0.00 0.00 0.00 4.08
55 56 8.517878 ACAATAATGCTATGGTATGATCTTTGC 58.482 33.333 0.00 0.00 0.00 3.68
63 64 9.345517 GCACATAAACAATAATGCTATGGTATG 57.654 33.333 5.79 0.00 33.23 2.39
64 65 9.076781 TGCACATAAACAATAATGCTATGGTAT 57.923 29.630 0.00 0.00 33.23 2.73
65 66 8.349245 GTGCACATAAACAATAATGCTATGGTA 58.651 33.333 13.17 0.00 33.23 3.25
66 67 7.202526 GTGCACATAAACAATAATGCTATGGT 58.797 34.615 13.17 0.00 33.23 3.55
67 68 6.642131 GGTGCACATAAACAATAATGCTATGG 59.358 38.462 20.43 0.00 33.23 2.74
68 69 7.428020 AGGTGCACATAAACAATAATGCTATG 58.572 34.615 20.43 0.92 34.29 2.23
69 70 7.587037 AGGTGCACATAAACAATAATGCTAT 57.413 32.000 20.43 0.00 32.50 2.97
70 71 7.403312 AAGGTGCACATAAACAATAATGCTA 57.597 32.000 20.43 0.00 32.50 3.49
71 72 5.920193 AGGTGCACATAAACAATAATGCT 57.080 34.783 20.43 0.00 32.50 3.79
72 73 7.920151 TCATAAGGTGCACATAAACAATAATGC 59.080 33.333 20.43 0.00 32.09 3.56
73 74 9.970395 ATCATAAGGTGCACATAAACAATAATG 57.030 29.630 20.43 5.14 0.00 1.90
80 81 9.612620 GCTAATAATCATAAGGTGCACATAAAC 57.387 33.333 20.43 0.00 0.00 2.01
81 82 9.348476 TGCTAATAATCATAAGGTGCACATAAA 57.652 29.630 20.43 3.84 0.00 1.40
82 83 8.916628 TGCTAATAATCATAAGGTGCACATAA 57.083 30.769 20.43 2.65 0.00 1.90
83 84 8.783093 GTTGCTAATAATCATAAGGTGCACATA 58.217 33.333 20.43 11.55 0.00 2.29
84 85 7.285172 TGTTGCTAATAATCATAAGGTGCACAT 59.715 33.333 20.43 9.24 0.00 3.21
85 86 6.601217 TGTTGCTAATAATCATAAGGTGCACA 59.399 34.615 20.43 0.00 0.00 4.57
86 87 7.026631 TGTTGCTAATAATCATAAGGTGCAC 57.973 36.000 8.80 8.80 0.00 4.57
87 88 7.339212 ACTTGTTGCTAATAATCATAAGGTGCA 59.661 33.333 0.00 0.00 0.00 4.57
88 89 7.707104 ACTTGTTGCTAATAATCATAAGGTGC 58.293 34.615 0.00 0.00 0.00 5.01
93 94 9.710979 GCGTAAACTTGTTGCTAATAATCATAA 57.289 29.630 0.00 0.00 0.00 1.90
94 95 9.104965 AGCGTAAACTTGTTGCTAATAATCATA 57.895 29.630 0.00 0.00 33.37 2.15
95 96 7.985476 AGCGTAAACTTGTTGCTAATAATCAT 58.015 30.769 0.00 0.00 33.37 2.45
96 97 7.372451 AGCGTAAACTTGTTGCTAATAATCA 57.628 32.000 0.00 0.00 33.37 2.57
97 98 9.931210 AATAGCGTAAACTTGTTGCTAATAATC 57.069 29.630 7.69 0.00 41.06 1.75
98 99 9.716507 CAATAGCGTAAACTTGTTGCTAATAAT 57.283 29.630 7.69 0.00 41.06 1.28
99 100 7.694784 GCAATAGCGTAAACTTGTTGCTAATAA 59.305 33.333 7.69 0.00 41.06 1.40
100 101 7.184106 GCAATAGCGTAAACTTGTTGCTAATA 58.816 34.615 7.69 0.00 41.06 0.98
101 102 6.027749 GCAATAGCGTAAACTTGTTGCTAAT 58.972 36.000 7.69 0.00 41.06 1.73
102 103 5.387279 GCAATAGCGTAAACTTGTTGCTAA 58.613 37.500 7.69 0.00 41.06 3.09
103 104 4.965062 GCAATAGCGTAAACTTGTTGCTA 58.035 39.130 6.52 6.52 41.83 3.49
104 105 3.821841 GCAATAGCGTAAACTTGTTGCT 58.178 40.909 0.00 3.10 37.23 3.91
175 176 6.883756 TGTGGTCAGCTATTTCATGTTATGAA 59.116 34.615 0.36 0.36 46.77 2.57
176 177 6.316140 GTGTGGTCAGCTATTTCATGTTATGA 59.684 38.462 0.00 0.00 37.55 2.15
177 178 6.093909 TGTGTGGTCAGCTATTTCATGTTATG 59.906 38.462 0.00 0.00 0.00 1.90
178 179 6.179756 TGTGTGGTCAGCTATTTCATGTTAT 58.820 36.000 0.00 0.00 0.00 1.89
179 180 5.555966 TGTGTGGTCAGCTATTTCATGTTA 58.444 37.500 0.00 0.00 0.00 2.41
180 181 4.397420 TGTGTGGTCAGCTATTTCATGTT 58.603 39.130 0.00 0.00 0.00 2.71
181 182 4.019792 TGTGTGGTCAGCTATTTCATGT 57.980 40.909 0.00 0.00 0.00 3.21
182 183 5.819379 AGTATGTGTGGTCAGCTATTTCATG 59.181 40.000 0.00 0.00 0.00 3.07
183 184 5.819379 CAGTATGTGTGGTCAGCTATTTCAT 59.181 40.000 0.00 0.00 0.00 2.57
184 185 5.178061 CAGTATGTGTGGTCAGCTATTTCA 58.822 41.667 0.00 0.00 0.00 2.69
185 186 4.034510 GCAGTATGTGTGGTCAGCTATTTC 59.965 45.833 0.00 0.00 39.31 2.17
186 187 3.941483 GCAGTATGTGTGGTCAGCTATTT 59.059 43.478 0.00 0.00 39.31 1.40
187 188 3.055167 TGCAGTATGTGTGGTCAGCTATT 60.055 43.478 0.00 0.00 39.31 1.73
188 189 2.501316 TGCAGTATGTGTGGTCAGCTAT 59.499 45.455 0.00 0.00 39.31 2.97
189 190 1.899142 TGCAGTATGTGTGGTCAGCTA 59.101 47.619 0.00 0.00 39.31 3.32
190 191 0.686789 TGCAGTATGTGTGGTCAGCT 59.313 50.000 0.00 0.00 39.31 4.24
191 192 1.399440 CATGCAGTATGTGTGGTCAGC 59.601 52.381 0.00 0.00 39.31 4.26
192 193 2.011947 CCATGCAGTATGTGTGGTCAG 58.988 52.381 0.00 0.00 37.76 3.51
193 194 2.112380 CCATGCAGTATGTGTGGTCA 57.888 50.000 0.00 0.00 37.76 4.02
196 197 2.938451 CACTACCATGCAGTATGTGTGG 59.062 50.000 0.00 0.00 44.62 4.17
197 198 3.599343 ACACTACCATGCAGTATGTGTG 58.401 45.455 14.61 11.89 39.31 3.82
198 199 3.981071 ACACTACCATGCAGTATGTGT 57.019 42.857 11.82 11.82 39.31 3.72
199 200 4.811024 CCTTACACTACCATGCAGTATGTG 59.189 45.833 0.00 3.80 39.31 3.21
200 201 4.469945 ACCTTACACTACCATGCAGTATGT 59.530 41.667 0.00 0.36 39.31 2.29
201 202 4.811024 CACCTTACACTACCATGCAGTATG 59.189 45.833 0.00 0.00 40.87 2.39
202 203 4.141711 CCACCTTACACTACCATGCAGTAT 60.142 45.833 0.00 0.00 0.00 2.12
203 204 3.196901 CCACCTTACACTACCATGCAGTA 59.803 47.826 0.00 0.00 0.00 2.74
204 205 2.027192 CCACCTTACACTACCATGCAGT 60.027 50.000 0.00 0.00 0.00 4.40
205 206 2.027192 ACCACCTTACACTACCATGCAG 60.027 50.000 0.00 0.00 0.00 4.41
206 207 1.982226 ACCACCTTACACTACCATGCA 59.018 47.619 0.00 0.00 0.00 3.96
207 208 2.781681 ACCACCTTACACTACCATGC 57.218 50.000 0.00 0.00 0.00 4.06
208 209 5.815740 GTCAATACCACCTTACACTACCATG 59.184 44.000 0.00 0.00 0.00 3.66
209 210 5.724854 AGTCAATACCACCTTACACTACCAT 59.275 40.000 0.00 0.00 0.00 3.55
210 211 5.088730 AGTCAATACCACCTTACACTACCA 58.911 41.667 0.00 0.00 0.00 3.25
211 212 5.186409 TGAGTCAATACCACCTTACACTACC 59.814 44.000 0.00 0.00 0.00 3.18
212 213 6.098017 GTGAGTCAATACCACCTTACACTAC 58.902 44.000 0.00 0.00 0.00 2.73
213 214 5.186409 GGTGAGTCAATACCACCTTACACTA 59.814 44.000 0.00 0.00 40.75 2.74
214 215 4.020485 GGTGAGTCAATACCACCTTACACT 60.020 45.833 0.00 0.00 40.75 3.55
215 216 4.020485 AGGTGAGTCAATACCACCTTACAC 60.020 45.833 7.41 0.00 46.52 2.90
216 217 4.020573 CAGGTGAGTCAATACCACCTTACA 60.021 45.833 10.26 0.00 46.52 2.41
217 218 4.222145 TCAGGTGAGTCAATACCACCTTAC 59.778 45.833 10.26 0.00 46.52 2.34
218 219 4.422057 TCAGGTGAGTCAATACCACCTTA 58.578 43.478 10.26 0.96 46.52 2.69
219 220 3.248024 TCAGGTGAGTCAATACCACCTT 58.752 45.455 10.26 0.00 46.52 3.50
221 222 3.914426 ATCAGGTGAGTCAATACCACC 57.086 47.619 0.00 0.00 42.61 4.61
222 223 4.406003 AGGTATCAGGTGAGTCAATACCAC 59.594 45.833 24.18 8.33 42.76 4.16
223 224 4.620723 AGGTATCAGGTGAGTCAATACCA 58.379 43.478 24.18 0.00 42.76 3.25
224 225 5.615925 AAGGTATCAGGTGAGTCAATACC 57.384 43.478 18.36 18.36 41.34 2.73
225 226 6.539103 GGAAAAGGTATCAGGTGAGTCAATAC 59.461 42.308 0.00 0.00 0.00 1.89
226 227 6.629515 CGGAAAAGGTATCAGGTGAGTCAATA 60.630 42.308 0.00 0.00 0.00 1.90
227 228 5.501156 GGAAAAGGTATCAGGTGAGTCAAT 58.499 41.667 0.00 0.00 0.00 2.57
228 229 4.562757 CGGAAAAGGTATCAGGTGAGTCAA 60.563 45.833 0.00 0.00 0.00 3.18
229 230 3.056107 CGGAAAAGGTATCAGGTGAGTCA 60.056 47.826 0.00 0.00 0.00 3.41
230 231 3.194968 TCGGAAAAGGTATCAGGTGAGTC 59.805 47.826 0.00 0.00 0.00 3.36
231 232 3.170717 TCGGAAAAGGTATCAGGTGAGT 58.829 45.455 0.00 0.00 0.00 3.41
232 233 3.195825 ACTCGGAAAAGGTATCAGGTGAG 59.804 47.826 0.00 0.00 0.00 3.51
233 234 3.170717 ACTCGGAAAAGGTATCAGGTGA 58.829 45.455 0.00 0.00 0.00 4.02
234 235 3.611766 ACTCGGAAAAGGTATCAGGTG 57.388 47.619 0.00 0.00 0.00 4.00
235 236 4.960469 TCATACTCGGAAAAGGTATCAGGT 59.040 41.667 0.00 0.00 0.00 4.00
236 237 5.531122 TCATACTCGGAAAAGGTATCAGG 57.469 43.478 0.00 0.00 0.00 3.86
237 238 8.141909 TGTATTCATACTCGGAAAAGGTATCAG 58.858 37.037 0.00 0.00 34.41 2.90
238 239 8.014070 TGTATTCATACTCGGAAAAGGTATCA 57.986 34.615 0.00 0.00 34.41 2.15
302 303 9.819267 TGTATATTTGGTATGACAACATTCGTA 57.181 29.630 0.00 0.00 37.87 3.43
328 333 2.568509 TGGGCTAGGCTAGTTTTTACGT 59.431 45.455 21.92 0.00 0.00 3.57
372 377 4.202315 GGTTACTTTTTGGAATGGTTGGCT 60.202 41.667 0.00 0.00 0.00 4.75
373 378 4.062293 GGTTACTTTTTGGAATGGTTGGC 58.938 43.478 0.00 0.00 0.00 4.52
380 385 7.088272 GCTCGTATTTGGTTACTTTTTGGAAT 58.912 34.615 0.00 0.00 0.00 3.01
382 387 5.048573 GGCTCGTATTTGGTTACTTTTTGGA 60.049 40.000 0.00 0.00 0.00 3.53
403 408 4.163839 AGTGAATCAGCAGAGAAATAGGCT 59.836 41.667 0.00 0.00 36.99 4.58
404 409 4.450053 AGTGAATCAGCAGAGAAATAGGC 58.550 43.478 0.00 0.00 0.00 3.93
405 410 5.689514 CGTAGTGAATCAGCAGAGAAATAGG 59.310 44.000 0.00 0.00 0.00 2.57
406 411 5.174761 GCGTAGTGAATCAGCAGAGAAATAG 59.825 44.000 0.00 0.00 0.00 1.73
407 412 5.043903 GCGTAGTGAATCAGCAGAGAAATA 58.956 41.667 0.00 0.00 0.00 1.40
408 413 3.868077 GCGTAGTGAATCAGCAGAGAAAT 59.132 43.478 0.00 0.00 0.00 2.17
409 414 3.254060 GCGTAGTGAATCAGCAGAGAAA 58.746 45.455 0.00 0.00 0.00 2.52
410 415 2.732282 CGCGTAGTGAATCAGCAGAGAA 60.732 50.000 0.00 0.00 43.07 2.87
411 416 1.202188 CGCGTAGTGAATCAGCAGAGA 60.202 52.381 0.00 0.00 43.07 3.10
412 417 1.195347 CGCGTAGTGAATCAGCAGAG 58.805 55.000 0.00 0.00 43.07 3.35
413 418 0.802222 GCGCGTAGTGAATCAGCAGA 60.802 55.000 8.43 0.00 43.07 4.26
414 419 1.078201 TGCGCGTAGTGAATCAGCAG 61.078 55.000 8.43 0.00 43.07 4.24
415 420 1.080161 TGCGCGTAGTGAATCAGCA 60.080 52.632 8.43 0.00 43.07 4.41
416 421 1.345176 GTGCGCGTAGTGAATCAGC 59.655 57.895 8.43 0.00 43.07 4.26
417 422 1.625870 CGTGCGCGTAGTGAATCAG 59.374 57.895 12.43 0.00 43.07 2.90
418 423 2.441378 GCGTGCGCGTAGTGAATCA 61.441 57.895 22.18 0.00 43.07 2.57
419 424 2.316687 GCGTGCGCGTAGTGAATC 59.683 61.111 22.18 0.00 43.07 2.52
449 454 3.281359 AATTTTGCGCGTGGAGGCC 62.281 57.895 8.43 0.00 0.00 5.19
451 456 0.179189 GAGAATTTTGCGCGTGGAGG 60.179 55.000 8.43 0.00 0.00 4.30
452 457 0.179189 GGAGAATTTTGCGCGTGGAG 60.179 55.000 8.43 0.00 0.00 3.86
458 463 0.729140 CGGTGTGGAGAATTTTGCGC 60.729 55.000 0.00 0.00 0.00 6.09
479 484 6.536731 AAATTTGTCAAATTTGCATACGCA 57.463 29.167 27.61 2.99 46.30 5.24
511 516 8.859156 CGGTTCATTTTATGATTTGATTTCGTT 58.141 29.630 0.00 0.00 39.39 3.85
512 517 8.026607 ACGGTTCATTTTATGATTTGATTTCGT 58.973 29.630 0.00 0.00 39.39 3.85
513 518 8.393395 ACGGTTCATTTTATGATTTGATTTCG 57.607 30.769 0.00 0.00 39.39 3.46
514 519 8.807581 GGACGGTTCATTTTATGATTTGATTTC 58.192 33.333 0.00 0.00 39.39 2.17
515 520 7.487829 CGGACGGTTCATTTTATGATTTGATTT 59.512 33.333 0.00 0.00 39.39 2.17
516 521 6.972328 CGGACGGTTCATTTTATGATTTGATT 59.028 34.615 0.00 0.00 39.39 2.57
517 522 6.094881 ACGGACGGTTCATTTTATGATTTGAT 59.905 34.615 0.00 0.00 39.39 2.57
518 523 5.413213 ACGGACGGTTCATTTTATGATTTGA 59.587 36.000 0.00 0.00 39.39 2.69
519 524 5.511377 CACGGACGGTTCATTTTATGATTTG 59.489 40.000 0.00 0.00 39.39 2.32
520 525 5.413213 TCACGGACGGTTCATTTTATGATTT 59.587 36.000 0.00 0.00 39.39 2.17
521 526 4.938832 TCACGGACGGTTCATTTTATGATT 59.061 37.500 0.00 0.00 39.39 2.57
522 527 4.509616 TCACGGACGGTTCATTTTATGAT 58.490 39.130 0.00 0.00 39.39 2.45
523 528 3.927854 TCACGGACGGTTCATTTTATGA 58.072 40.909 0.00 0.00 37.55 2.15
524 529 4.671880 TTCACGGACGGTTCATTTTATG 57.328 40.909 0.00 0.00 0.00 1.90
525 530 4.758165 AGTTTCACGGACGGTTCATTTTAT 59.242 37.500 0.00 0.00 0.00 1.40
526 531 4.128643 AGTTTCACGGACGGTTCATTTTA 58.871 39.130 0.00 0.00 0.00 1.52
527 532 2.946990 AGTTTCACGGACGGTTCATTTT 59.053 40.909 0.00 0.00 0.00 1.82
528 533 2.567985 AGTTTCACGGACGGTTCATTT 58.432 42.857 0.00 0.00 0.00 2.32
529 534 2.249844 AGTTTCACGGACGGTTCATT 57.750 45.000 0.00 0.00 0.00 2.57
530 535 3.604875 ATAGTTTCACGGACGGTTCAT 57.395 42.857 0.00 0.00 0.00 2.57
531 536 3.389925 AATAGTTTCACGGACGGTTCA 57.610 42.857 0.00 0.00 0.00 3.18
532 537 3.742369 TGAAATAGTTTCACGGACGGTTC 59.258 43.478 1.24 0.00 44.21 3.62
533 538 3.731089 TGAAATAGTTTCACGGACGGTT 58.269 40.909 1.24 0.00 44.21 4.44
534 539 3.389925 TGAAATAGTTTCACGGACGGT 57.610 42.857 1.24 0.00 44.21 4.83
542 547 1.463056 CAGCCGCGTGAAATAGTTTCA 59.537 47.619 4.92 1.24 46.68 2.69
543 548 1.730064 TCAGCCGCGTGAAATAGTTTC 59.270 47.619 4.92 0.00 40.08 2.78
544 549 1.463444 GTCAGCCGCGTGAAATAGTTT 59.537 47.619 4.92 0.00 0.00 2.66
545 550 1.076332 GTCAGCCGCGTGAAATAGTT 58.924 50.000 4.92 0.00 0.00 2.24
546 551 0.246635 AGTCAGCCGCGTGAAATAGT 59.753 50.000 4.92 0.00 0.00 2.12
547 552 1.359848 AAGTCAGCCGCGTGAAATAG 58.640 50.000 4.92 0.00 0.00 1.73
548 553 1.803334 AAAGTCAGCCGCGTGAAATA 58.197 45.000 4.92 0.00 0.00 1.40
549 554 0.951558 AAAAGTCAGCCGCGTGAAAT 59.048 45.000 4.92 0.00 0.00 2.17
550 555 0.736053 AAAAAGTCAGCCGCGTGAAA 59.264 45.000 4.92 0.00 0.00 2.69
551 556 2.399856 AAAAAGTCAGCCGCGTGAA 58.600 47.368 4.92 0.00 0.00 3.18
552 557 4.134623 AAAAAGTCAGCCGCGTGA 57.865 50.000 4.92 0.00 0.00 4.35
566 571 1.025113 TGTCGGGCGTCACACAAAAA 61.025 50.000 0.00 0.00 0.00 1.94
567 572 1.449778 TGTCGGGCGTCACACAAAA 60.450 52.632 0.00 0.00 0.00 2.44
568 573 2.174969 GTGTCGGGCGTCACACAAA 61.175 57.895 5.81 0.00 42.20 2.83
569 574 2.586635 GTGTCGGGCGTCACACAA 60.587 61.111 5.81 0.00 42.20 3.33
570 575 4.934942 CGTGTCGGGCGTCACACA 62.935 66.667 10.72 0.00 42.67 3.72
571 576 4.634133 TCGTGTCGGGCGTCACAC 62.634 66.667 0.75 0.75 39.70 3.82
572 577 3.834447 CTTCGTGTCGGGCGTCACA 62.834 63.158 0.00 0.00 34.69 3.58
573 578 3.103911 CTTCGTGTCGGGCGTCAC 61.104 66.667 0.00 0.00 0.00 3.67
574 579 4.351938 CCTTCGTGTCGGGCGTCA 62.352 66.667 0.00 0.00 0.00 4.35
582 587 2.758770 TAGTGTGGCGCCTTCGTGTC 62.759 60.000 29.70 10.72 38.14 3.67
583 588 2.863346 TAGTGTGGCGCCTTCGTGT 61.863 57.895 29.70 9.85 38.14 4.49
584 589 2.048597 TAGTGTGGCGCCTTCGTG 60.049 61.111 29.70 0.00 38.14 4.35
585 590 2.048503 GTAGTGTGGCGCCTTCGT 60.049 61.111 29.70 12.53 38.14 3.85
586 591 2.048597 TGTAGTGTGGCGCCTTCG 60.049 61.111 29.70 0.00 39.07 3.79
587 592 1.004918 AGTGTAGTGTGGCGCCTTC 60.005 57.895 29.70 20.58 0.00 3.46
588 593 1.301716 CAGTGTAGTGTGGCGCCTT 60.302 57.895 29.70 13.03 0.00 4.35
589 594 2.343758 CAGTGTAGTGTGGCGCCT 59.656 61.111 29.70 9.99 0.00 5.52
590 595 2.030562 ACAGTGTAGTGTGGCGCC 59.969 61.111 22.73 22.73 0.00 6.53
591 596 2.954753 GCACAGTGTAGTGTGGCGC 61.955 63.158 18.52 0.00 46.73 6.53
592 597 1.157257 TTGCACAGTGTAGTGTGGCG 61.157 55.000 18.52 0.00 46.73 5.69
593 598 0.307760 GTTGCACAGTGTAGTGTGGC 59.692 55.000 18.52 12.34 46.73 5.01
594 599 0.581529 CGTTGCACAGTGTAGTGTGG 59.418 55.000 18.52 1.81 46.73 4.17
596 601 1.157870 GGCGTTGCACAGTGTAGTGT 61.158 55.000 1.61 0.00 41.52 3.55
597 602 0.880278 AGGCGTTGCACAGTGTAGTG 60.880 55.000 1.61 0.00 42.37 2.74
598 603 0.600255 GAGGCGTTGCACAGTGTAGT 60.600 55.000 1.61 0.00 0.00 2.73
599 604 0.599991 TGAGGCGTTGCACAGTGTAG 60.600 55.000 1.61 0.00 0.00 2.74
600 605 0.878523 GTGAGGCGTTGCACAGTGTA 60.879 55.000 1.61 0.00 35.19 2.90
601 606 2.180204 GTGAGGCGTTGCACAGTGT 61.180 57.895 1.61 0.00 35.19 3.55
602 607 2.179547 TGTGAGGCGTTGCACAGTG 61.180 57.895 0.00 0.00 39.86 3.66
603 608 2.189257 TGTGAGGCGTTGCACAGT 59.811 55.556 0.00 0.00 39.86 3.55
605 610 0.320050 TATCTGTGAGGCGTTGCACA 59.680 50.000 0.00 0.00 42.25 4.57
606 611 1.002366 CTATCTGTGAGGCGTTGCAC 58.998 55.000 0.00 0.00 35.63 4.57
607 612 0.108186 CCTATCTGTGAGGCGTTGCA 60.108 55.000 0.00 0.00 0.00 4.08
608 613 2.682893 CCTATCTGTGAGGCGTTGC 58.317 57.895 0.00 0.00 0.00 4.17
614 619 1.032794 TGTAGCGCCTATCTGTGAGG 58.967 55.000 2.29 0.00 37.12 3.86
615 620 1.598183 CGTGTAGCGCCTATCTGTGAG 60.598 57.143 2.29 0.00 0.00 3.51
616 621 0.380733 CGTGTAGCGCCTATCTGTGA 59.619 55.000 2.29 0.00 0.00 3.58
617 622 0.595053 CCGTGTAGCGCCTATCTGTG 60.595 60.000 2.29 0.00 39.71 3.66
618 623 1.734137 CCGTGTAGCGCCTATCTGT 59.266 57.895 2.29 0.00 39.71 3.41
619 624 1.661821 GCCGTGTAGCGCCTATCTG 60.662 63.158 2.29 0.00 39.71 2.90
620 625 2.728817 GCCGTGTAGCGCCTATCT 59.271 61.111 2.29 0.00 39.71 1.98
621 626 2.355956 GGCCGTGTAGCGCCTATC 60.356 66.667 2.29 0.00 39.71 2.08
622 627 3.151710 TGGCCGTGTAGCGCCTAT 61.152 61.111 2.29 0.00 39.71 2.57
623 628 3.833645 CTGGCCGTGTAGCGCCTA 61.834 66.667 2.29 0.00 39.71 3.93
641 646 3.179265 GATCACACGGGTGCGACG 61.179 66.667 14.50 0.00 44.87 5.12
642 647 2.813908 GGATCACACGGGTGCGAC 60.814 66.667 14.50 6.54 44.87 5.19
643 648 4.429212 CGGATCACACGGGTGCGA 62.429 66.667 14.50 0.00 44.87 5.10
644 649 3.925362 TTCGGATCACACGGGTGCG 62.925 63.158 14.50 11.68 44.87 5.34
645 650 1.231958 TTTTCGGATCACACGGGTGC 61.232 55.000 14.50 0.00 44.87 5.01
646 651 1.448985 ATTTTCGGATCACACGGGTG 58.551 50.000 12.84 12.84 46.66 4.61
647 652 2.194201 AATTTTCGGATCACACGGGT 57.806 45.000 0.00 0.00 0.00 5.28
648 653 3.267483 AGTAATTTTCGGATCACACGGG 58.733 45.455 0.00 0.00 0.00 5.28
649 654 5.579511 ACTTAGTAATTTTCGGATCACACGG 59.420 40.000 0.00 0.00 0.00 4.94
650 655 6.309494 TGACTTAGTAATTTTCGGATCACACG 59.691 38.462 0.00 0.00 0.00 4.49
651 656 7.331193 ACTGACTTAGTAATTTTCGGATCACAC 59.669 37.037 0.00 0.00 38.04 3.82
652 657 7.330946 CACTGACTTAGTAATTTTCGGATCACA 59.669 37.037 0.00 0.00 37.60 3.58
653 658 7.331193 ACACTGACTTAGTAATTTTCGGATCAC 59.669 37.037 0.00 0.00 37.60 3.06
654 659 7.330946 CACACTGACTTAGTAATTTTCGGATCA 59.669 37.037 0.00 0.00 37.60 2.92
655 660 7.674240 GCACACTGACTTAGTAATTTTCGGATC 60.674 40.741 0.00 0.00 37.60 3.36
656 661 6.092259 GCACACTGACTTAGTAATTTTCGGAT 59.908 38.462 0.00 0.00 37.60 4.18
657 662 5.407387 GCACACTGACTTAGTAATTTTCGGA 59.593 40.000 0.00 0.00 37.60 4.55
658 663 5.178623 TGCACACTGACTTAGTAATTTTCGG 59.821 40.000 0.00 0.00 37.60 4.30
659 664 6.223138 TGCACACTGACTTAGTAATTTTCG 57.777 37.500 0.00 0.00 37.60 3.46
660 665 6.080406 GCTGCACACTGACTTAGTAATTTTC 58.920 40.000 0.00 0.00 37.60 2.29
661 666 5.334105 CGCTGCACACTGACTTAGTAATTTT 60.334 40.000 0.00 0.00 37.60 1.82
662 667 4.152402 CGCTGCACACTGACTTAGTAATTT 59.848 41.667 0.00 0.00 37.60 1.82
663 668 3.679980 CGCTGCACACTGACTTAGTAATT 59.320 43.478 0.00 0.00 37.60 1.40
664 669 3.254060 CGCTGCACACTGACTTAGTAAT 58.746 45.455 0.00 0.00 37.60 1.89
665 670 2.672714 CGCTGCACACTGACTTAGTAA 58.327 47.619 0.00 0.00 37.60 2.24
666 671 1.668919 GCGCTGCACACTGACTTAGTA 60.669 52.381 0.00 0.00 37.60 1.82
667 672 0.946221 GCGCTGCACACTGACTTAGT 60.946 55.000 0.00 0.00 41.36 2.24
668 673 1.630244 GGCGCTGCACACTGACTTAG 61.630 60.000 7.64 0.00 0.00 2.18
669 674 1.667830 GGCGCTGCACACTGACTTA 60.668 57.895 7.64 0.00 0.00 2.24
670 675 2.974698 GGCGCTGCACACTGACTT 60.975 61.111 7.64 0.00 0.00 3.01
671 676 3.933722 AGGCGCTGCACACTGACT 61.934 61.111 7.64 0.00 0.00 3.41
672 677 3.720193 CAGGCGCTGCACACTGAC 61.720 66.667 7.64 0.00 32.86 3.51
673 678 3.871248 CTCAGGCGCTGCACACTGA 62.871 63.158 7.64 9.54 37.61 3.41
674 679 3.420606 CTCAGGCGCTGCACACTG 61.421 66.667 7.64 4.89 0.00 3.66
675 680 3.586461 CTCTCAGGCGCTGCACACT 62.586 63.158 7.64 0.00 0.00 3.55
676 681 3.117171 CTCTCAGGCGCTGCACAC 61.117 66.667 7.64 0.00 0.00 3.82
678 683 3.362399 TAGCTCTCAGGCGCTGCAC 62.362 63.158 7.64 0.00 37.05 4.57
679 684 3.070576 TAGCTCTCAGGCGCTGCA 61.071 61.111 7.64 0.00 37.05 4.41
680 685 2.279385 CTAGCTCTCAGGCGCTGC 60.279 66.667 7.64 2.66 37.05 5.25
681 686 2.416678 CCTAGCTCTCAGGCGCTG 59.583 66.667 7.64 3.67 37.05 5.18
693 698 4.165507 ACTGTATAGTGTGGCGCCTAGC 62.166 54.545 29.70 17.93 39.66 3.42
694 699 1.681793 ACTGTATAGTGTGGCGCCTAG 59.318 52.381 29.70 13.13 35.34 3.02
695 700 1.771565 ACTGTATAGTGTGGCGCCTA 58.228 50.000 29.70 14.39 35.34 3.93
696 701 2.591915 ACTGTATAGTGTGGCGCCT 58.408 52.632 29.70 9.99 35.34 5.52
705 710 2.427453 AGCTAGCGTTGCACTGTATAGT 59.573 45.455 9.55 0.00 37.75 2.12
706 711 3.046390 GAGCTAGCGTTGCACTGTATAG 58.954 50.000 9.55 0.00 0.00 1.31
707 712 2.223735 GGAGCTAGCGTTGCACTGTATA 60.224 50.000 9.55 0.00 0.00 1.47
708 713 1.471676 GGAGCTAGCGTTGCACTGTAT 60.472 52.381 9.55 0.00 0.00 2.29
709 714 0.108804 GGAGCTAGCGTTGCACTGTA 60.109 55.000 9.55 0.00 0.00 2.74
710 715 1.374758 GGAGCTAGCGTTGCACTGT 60.375 57.895 9.55 0.00 0.00 3.55
711 716 0.173481 TAGGAGCTAGCGTTGCACTG 59.827 55.000 9.55 0.00 0.00 3.66
712 717 0.457851 CTAGGAGCTAGCGTTGCACT 59.542 55.000 9.55 5.23 0.00 4.40
713 718 0.528684 CCTAGGAGCTAGCGTTGCAC 60.529 60.000 9.55 0.00 33.12 4.57
714 719 1.816537 CCTAGGAGCTAGCGTTGCA 59.183 57.895 9.55 0.00 33.12 4.08
715 720 1.592939 GCCTAGGAGCTAGCGTTGC 60.593 63.158 14.75 4.11 33.12 4.17
716 721 0.390860 ATGCCTAGGAGCTAGCGTTG 59.609 55.000 14.75 0.00 33.12 4.10
717 722 1.123928 AATGCCTAGGAGCTAGCGTT 58.876 50.000 14.75 0.03 33.12 4.84
718 723 0.390860 CAATGCCTAGGAGCTAGCGT 59.609 55.000 14.75 0.45 33.12 5.07
719 724 0.948141 GCAATGCCTAGGAGCTAGCG 60.948 60.000 14.75 0.00 33.12 4.26
720 725 0.107456 TGCAATGCCTAGGAGCTAGC 59.893 55.000 14.75 6.62 33.12 3.42
721 726 1.415659 AGTGCAATGCCTAGGAGCTAG 59.584 52.381 14.75 0.00 34.16 3.42
722 727 1.500474 AGTGCAATGCCTAGGAGCTA 58.500 50.000 14.75 0.00 0.00 3.32
723 728 1.415659 CTAGTGCAATGCCTAGGAGCT 59.584 52.381 14.75 0.00 31.02 4.09
724 729 1.139853 ACTAGTGCAATGCCTAGGAGC 59.860 52.381 24.21 10.85 35.39 4.70
725 730 2.831333 CACTAGTGCAATGCCTAGGAG 58.169 52.381 24.21 16.61 35.39 3.69
726 731 2.988010 CACTAGTGCAATGCCTAGGA 57.012 50.000 24.21 0.00 35.39 2.94
738 743 1.808799 CTCAGGCGCTGCACTAGTG 60.809 63.158 18.93 18.93 39.95 2.74
739 744 1.943116 CTCTCAGGCGCTGCACTAGT 61.943 60.000 7.64 0.00 0.00 2.57
740 745 1.226916 CTCTCAGGCGCTGCACTAG 60.227 63.158 7.64 0.00 0.00 2.57
741 746 1.536073 AACTCTCAGGCGCTGCACTA 61.536 55.000 7.64 0.00 0.00 2.74
742 747 1.536073 TAACTCTCAGGCGCTGCACT 61.536 55.000 7.64 0.00 0.00 4.40
743 748 1.079819 TAACTCTCAGGCGCTGCAC 60.080 57.895 7.64 0.00 0.00 4.57
744 749 1.216444 CTAACTCTCAGGCGCTGCA 59.784 57.895 7.64 0.00 0.00 4.41
745 750 1.520342 CCTAACTCTCAGGCGCTGC 60.520 63.158 7.64 0.00 0.00 5.25
746 751 4.823276 CCTAACTCTCAGGCGCTG 57.177 61.111 7.64 3.67 0.00 5.18
751 756 1.153549 GTGGCGCCTAACTCTCAGG 60.154 63.158 29.70 0.00 36.16 3.86
752 757 1.517257 CGTGGCGCCTAACTCTCAG 60.517 63.158 29.70 0.96 0.00 3.35
753 758 2.571757 CGTGGCGCCTAACTCTCA 59.428 61.111 29.70 0.07 0.00 3.27
754 759 2.017559 ATCCGTGGCGCCTAACTCTC 62.018 60.000 29.70 8.06 0.00 3.20
755 760 2.017559 GATCCGTGGCGCCTAACTCT 62.018 60.000 29.70 7.90 0.00 3.24
756 761 1.591863 GATCCGTGGCGCCTAACTC 60.592 63.158 29.70 13.89 0.00 3.01
757 762 2.298158 CTGATCCGTGGCGCCTAACT 62.298 60.000 29.70 8.49 0.00 2.24
758 763 1.883084 CTGATCCGTGGCGCCTAAC 60.883 63.158 29.70 17.80 0.00 2.34
759 764 2.499205 CTGATCCGTGGCGCCTAA 59.501 61.111 29.70 4.80 0.00 2.69
760 765 4.221422 GCTGATCCGTGGCGCCTA 62.221 66.667 29.70 11.59 0.00 3.93
770 775 0.861837 CTATTTCACGCGGCTGATCC 59.138 55.000 12.47 0.00 0.00 3.36
771 776 1.571919 ACTATTTCACGCGGCTGATC 58.428 50.000 12.47 0.00 0.00 2.92
772 777 2.024176 AACTATTTCACGCGGCTGAT 57.976 45.000 12.47 1.51 0.00 2.90
773 778 1.730064 GAAACTATTTCACGCGGCTGA 59.270 47.619 12.47 2.44 39.45 4.26
774 779 1.463056 TGAAACTATTTCACGCGGCTG 59.537 47.619 12.47 0.00 44.21 4.85
775 780 1.803334 TGAAACTATTTCACGCGGCT 58.197 45.000 12.47 0.00 44.21 5.52
785 790 9.520515 ACAGAATAAACTGTCCATGAAACTATT 57.479 29.630 0.00 0.00 46.36 1.73
799 804 9.132521 GACCAAATCAAATCACAGAATAAACTG 57.867 33.333 0.00 0.00 42.78 3.16
800 805 9.082313 AGACCAAATCAAATCACAGAATAAACT 57.918 29.630 0.00 0.00 0.00 2.66
804 809 9.685276 ACATAGACCAAATCAAATCACAGAATA 57.315 29.630 0.00 0.00 0.00 1.75
805 810 8.464404 CACATAGACCAAATCAAATCACAGAAT 58.536 33.333 0.00 0.00 0.00 2.40
806 811 7.448161 ACACATAGACCAAATCAAATCACAGAA 59.552 33.333 0.00 0.00 0.00 3.02
807 812 6.942005 ACACATAGACCAAATCAAATCACAGA 59.058 34.615 0.00 0.00 0.00 3.41
808 813 7.094677 TGACACATAGACCAAATCAAATCACAG 60.095 37.037 0.00 0.00 0.00 3.66
809 814 6.714356 TGACACATAGACCAAATCAAATCACA 59.286 34.615 0.00 0.00 0.00 3.58
810 815 7.144722 TGACACATAGACCAAATCAAATCAC 57.855 36.000 0.00 0.00 0.00 3.06
811 816 7.757941 TTGACACATAGACCAAATCAAATCA 57.242 32.000 0.00 0.00 0.00 2.57
812 817 9.643693 AATTTGACACATAGACCAAATCAAATC 57.356 29.630 9.11 0.00 41.85 2.17
814 819 9.258826 CAAATTTGACACATAGACCAAATCAAA 57.741 29.630 13.08 0.00 38.00 2.69
815 820 8.420222 ACAAATTTGACACATAGACCAAATCAA 58.580 29.630 24.64 0.00 38.00 2.57
816 821 7.950512 ACAAATTTGACACATAGACCAAATCA 58.049 30.769 24.64 0.00 38.00 2.57
817 822 8.081633 TGACAAATTTGACACATAGACCAAATC 58.918 33.333 24.64 6.30 38.00 2.17
818 823 7.950512 TGACAAATTTGACACATAGACCAAAT 58.049 30.769 24.64 0.00 39.90 2.32
819 824 7.340122 TGACAAATTTGACACATAGACCAAA 57.660 32.000 24.64 0.00 33.72 3.28
820 825 6.951062 TGACAAATTTGACACATAGACCAA 57.049 33.333 24.64 0.00 0.00 3.67
821 826 6.951062 TTGACAAATTTGACACATAGACCA 57.049 33.333 24.64 4.45 32.94 4.02
822 827 8.816640 AATTTGACAAATTTGACACATAGACC 57.183 30.769 24.64 1.82 37.84 3.85
835 840 1.797635 CGGCGGCAAATTTGACAAATT 59.202 42.857 23.49 18.41 42.62 1.82
836 841 1.427435 CGGCGGCAAATTTGACAAAT 58.573 45.000 23.49 7.62 35.35 2.32
837 842 1.218230 GCGGCGGCAAATTTGACAAA 61.218 50.000 23.49 2.48 35.35 2.83
838 843 1.663074 GCGGCGGCAAATTTGACAA 60.663 52.632 23.49 0.00 35.35 3.18
839 844 2.049618 GCGGCGGCAAATTTGACA 60.050 55.556 23.49 0.00 35.35 3.58
840 845 2.809174 GGCGGCGGCAAATTTGAC 60.809 61.111 29.41 18.50 42.47 3.18
841 846 4.412270 CGGCGGCGGCAAATTTGA 62.412 61.111 32.59 0.00 42.47 2.69
842 847 2.606155 ATACGGCGGCGGCAAATTTG 62.606 55.000 35.05 17.52 42.47 2.32
843 848 2.331019 GATACGGCGGCGGCAAATTT 62.331 55.000 35.05 14.94 42.47 1.82
844 849 2.826738 ATACGGCGGCGGCAAATT 60.827 55.556 35.05 15.72 42.47 1.82
845 850 3.276846 GATACGGCGGCGGCAAAT 61.277 61.111 35.05 23.78 42.47 2.32
859 864 1.268283 TGTGGATGGTGGTGCGGATA 61.268 55.000 0.00 0.00 0.00 2.59
860 865 1.925285 ATGTGGATGGTGGTGCGGAT 61.925 55.000 0.00 0.00 0.00 4.18
887 894 3.279434 GTGGATATTTTCGTTGAGGGCT 58.721 45.455 0.00 0.00 0.00 5.19
897 904 4.610680 GCGGCGTAGAATGTGGATATTTTC 60.611 45.833 9.37 0.00 0.00 2.29
899 906 2.806244 GCGGCGTAGAATGTGGATATTT 59.194 45.455 9.37 0.00 0.00 1.40
901 908 1.337823 GGCGGCGTAGAATGTGGATAT 60.338 52.381 9.37 0.00 0.00 1.63
902 909 0.032952 GGCGGCGTAGAATGTGGATA 59.967 55.000 9.37 0.00 0.00 2.59
936 946 2.671070 CGGATTGGTGCAGAGGGT 59.329 61.111 0.00 0.00 0.00 4.34
937 947 2.825836 GCGGATTGGTGCAGAGGG 60.826 66.667 0.00 0.00 0.00 4.30
938 948 2.825836 GGCGGATTGGTGCAGAGG 60.826 66.667 0.00 0.00 0.00 3.69
939 949 1.377725 AAGGCGGATTGGTGCAGAG 60.378 57.895 0.00 0.00 0.00 3.35
940 950 1.675310 CAAGGCGGATTGGTGCAGA 60.675 57.895 0.00 0.00 0.00 4.26
941 951 2.879907 CAAGGCGGATTGGTGCAG 59.120 61.111 0.00 0.00 0.00 4.41
942 952 3.372730 GCAAGGCGGATTGGTGCA 61.373 61.111 0.00 0.00 35.28 4.57
943 953 3.056313 GAGCAAGGCGGATTGGTGC 62.056 63.158 4.63 0.00 40.78 5.01
944 954 1.675310 TGAGCAAGGCGGATTGGTG 60.675 57.895 4.63 0.00 40.78 4.17
945 955 1.675641 GTGAGCAAGGCGGATTGGT 60.676 57.895 0.01 0.01 43.24 3.67
946 956 0.962356 AAGTGAGCAAGGCGGATTGG 60.962 55.000 0.00 0.00 0.00 3.16
947 957 0.449388 GAAGTGAGCAAGGCGGATTG 59.551 55.000 0.00 0.00 0.00 2.67
948 958 0.678048 GGAAGTGAGCAAGGCGGATT 60.678 55.000 0.00 0.00 0.00 3.01
949 959 1.078143 GGAAGTGAGCAAGGCGGAT 60.078 57.895 0.00 0.00 0.00 4.18
991 1001 3.903282 CATTTCCATGGCCGGCGG 61.903 66.667 24.35 24.35 0.00 6.13
1016 1026 2.260481 CTTTCTTCGAACTAGGACCGC 58.740 52.381 0.00 0.00 0.00 5.68
1020 1030 7.281040 TGACTTAACTTTCTTCGAACTAGGA 57.719 36.000 0.00 0.00 0.00 2.94
1021 1031 6.089685 GCTGACTTAACTTTCTTCGAACTAGG 59.910 42.308 0.00 0.00 0.00 3.02
1037 1047 0.947180 GTTGACGGCCGCTGACTTAA 60.947 55.000 28.58 5.28 0.00 1.85
1038 1048 1.373748 GTTGACGGCCGCTGACTTA 60.374 57.895 28.58 0.00 0.00 2.24
1137 1147 1.525535 ATCTTCATCAGCTGCGGGC 60.526 57.895 9.47 0.00 42.19 6.13
1138 1148 0.179065 TCATCTTCATCAGCTGCGGG 60.179 55.000 9.47 0.35 0.00 6.13
1140 1150 1.531578 CCATCATCTTCATCAGCTGCG 59.468 52.381 9.47 2.31 0.00 5.18
1141 1151 2.548904 GTCCATCATCTTCATCAGCTGC 59.451 50.000 9.47 0.00 0.00 5.25
1142 1152 2.801111 CGTCCATCATCTTCATCAGCTG 59.199 50.000 7.63 7.63 0.00 4.24
1143 1153 2.806019 GCGTCCATCATCTTCATCAGCT 60.806 50.000 0.00 0.00 0.00 4.24
1144 1154 1.530293 GCGTCCATCATCTTCATCAGC 59.470 52.381 0.00 0.00 0.00 4.26
1145 1155 1.791204 CGCGTCCATCATCTTCATCAG 59.209 52.381 0.00 0.00 0.00 2.90
1147 1157 1.789464 GACGCGTCCATCATCTTCATC 59.211 52.381 28.61 0.00 0.00 2.92
1148 1158 1.858091 GACGCGTCCATCATCTTCAT 58.142 50.000 28.61 0.00 0.00 2.57
1149 1159 0.525455 CGACGCGTCCATCATCTTCA 60.525 55.000 31.84 0.00 0.00 3.02
1150 1160 0.248498 TCGACGCGTCCATCATCTTC 60.248 55.000 31.84 5.40 0.00 2.87
1151 1161 0.525668 GTCGACGCGTCCATCATCTT 60.526 55.000 31.84 0.00 0.00 2.40
1152 1162 1.064296 GTCGACGCGTCCATCATCT 59.936 57.895 31.84 0.00 0.00 2.90
1203 1227 0.183971 GGAGGAGGGAGACGATCTCA 59.816 60.000 14.26 0.00 45.12 3.27
1282 1306 4.070552 GAGGTTGAGAGGCGCGGT 62.071 66.667 8.83 0.00 0.00 5.68
1467 1506 0.322975 GGCAGAACTCAAGCTCCTGA 59.677 55.000 0.00 0.00 0.00 3.86
1560 1599 1.301479 GGTGACAACACGGAGGGTC 60.301 63.158 0.00 0.00 46.77 4.46
1740 1782 0.392327 TGATCCGAGCGCATTGGAAA 60.392 50.000 17.41 7.96 45.17 3.13
1745 1787 0.811616 GGAGTTGATCCGAGCGCATT 60.812 55.000 11.47 0.00 38.67 3.56
1839 1881 4.445052 GCATTCTCGATGATGAGTTCTCTG 59.555 45.833 11.17 0.00 38.03 3.35
2289 2399 1.135141 ACTTCAGAGCACGAGCAGATC 60.135 52.381 7.77 0.00 45.49 2.75
2305 2415 4.919754 GTGATGAAAACAATCAGCCACTTC 59.080 41.667 0.00 0.00 34.89 3.01
2312 2422 7.591165 AGAACAGATGTGATGAAAACAATCAG 58.409 34.615 0.00 0.00 34.78 2.90
2414 2527 8.120465 CGATAAAATTGCATAACTACCGTCTTT 58.880 33.333 0.00 0.00 0.00 2.52
2434 2547 1.150536 GCCCTGATGCCCCGATAAA 59.849 57.895 0.00 0.00 0.00 1.40
2522 2635 1.508632 CCCGGCAGTAATATTCGGTG 58.491 55.000 10.56 0.85 39.13 4.94
2565 2678 1.801178 CCGTTTCTCCAACTGAAGCTC 59.199 52.381 0.00 0.00 32.53 4.09
2621 2734 2.854777 CGAATAACAGCGGAGAAGTCTG 59.145 50.000 0.00 0.00 0.00 3.51
2690 2803 3.816523 CCTAAACCCAAGTTCAACGCTTA 59.183 43.478 0.00 0.00 34.19 3.09
2694 2807 3.250040 CAGACCTAAACCCAAGTTCAACG 59.750 47.826 0.00 0.00 34.19 4.10
2736 4378 8.627208 ATTCAGACAATACACAAACTGAGATT 57.373 30.769 0.00 0.00 36.13 2.40
2847 4770 8.428536 CGTAATCATATTCAACTACAAGCTAGC 58.571 37.037 6.62 6.62 0.00 3.42
2861 4798 8.608844 AAATTCCTCCAGTCGTAATCATATTC 57.391 34.615 0.00 0.00 0.00 1.75
2900 4842 1.003718 AGCTGTACCCCGTTTGAGC 60.004 57.895 0.00 0.00 0.00 4.26
2950 4892 3.041940 CGGTTGTCCACGCTGGTC 61.042 66.667 4.33 0.41 39.03 4.02
2971 4913 3.608662 ACGTCCGCCGACTTTGGA 61.609 61.111 3.71 0.00 40.70 3.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.