Multiple sequence alignment - TraesCS5D01G080700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G080700 chr5D 100.000 6502 0 0 1 6502 80705069 80698568 0.000000e+00 12008.0
1 TraesCS5D01G080700 chr5D 95.000 300 12 2 6202 6499 538182386 538182684 9.870000e-128 468.0
2 TraesCS5D01G080700 chr5D 87.937 315 22 8 6204 6502 559836797 559837111 2.230000e-94 357.0
3 TraesCS5D01G080700 chr5D 92.308 91 7 0 1 91 558970444 558970534 5.290000e-26 130.0
4 TraesCS5D01G080700 chr5B 94.221 5710 196 55 532 6201 89633357 89627742 0.000000e+00 8593.0
5 TraesCS5D01G080700 chr5B 90.615 309 19 6 6204 6502 472218355 472218663 1.020000e-107 401.0
6 TraesCS5D01G080700 chr5B 90.572 297 18 7 100 391 89633712 89633421 1.020000e-102 385.0
7 TraesCS5D01G080700 chr5B 93.103 87 6 0 3 89 561938510 561938596 1.900000e-25 128.0
8 TraesCS5D01G080700 chr5B 92.135 89 7 0 1 89 537533235 537533147 6.840000e-25 126.0
9 TraesCS5D01G080700 chr5B 90.323 93 9 0 2 94 288902475 288902567 8.850000e-24 122.0
10 TraesCS5D01G080700 chr5A 93.483 5739 194 67 532 6162 77090555 77084889 0.000000e+00 8360.0
11 TraesCS5D01G080700 chr5A 82.394 426 29 7 93 481 77090970 77090554 4.860000e-86 329.0
12 TraesCS5D01G080700 chr5A 97.619 42 1 0 6160 6201 77084766 77084725 9.040000e-09 73.1
13 TraesCS5D01G080700 chr1B 92.381 315 10 2 6202 6502 45357777 45357463 2.780000e-118 436.0
14 TraesCS5D01G080700 chr1B 89.524 315 17 6 6204 6502 174650848 174651162 1.020000e-102 385.0
15 TraesCS5D01G080700 chr1B 93.103 87 6 0 2 88 368411316 368411230 1.900000e-25 128.0
16 TraesCS5D01G080700 chr4D 92.332 313 10 2 6204 6502 42242606 42242294 3.600000e-117 433.0
17 TraesCS5D01G080700 chr4D 83.163 196 31 2 1001 1195 427931627 427931433 1.860000e-40 178.0
18 TraesCS5D01G080700 chr7D 92.063 315 11 2 6202 6502 210382591 210382905 1.300000e-116 431.0
19 TraesCS5D01G080700 chr7D 94.894 235 11 1 6193 6427 500520806 500521039 3.700000e-97 366.0
20 TraesCS5D01G080700 chr7D 93.133 233 15 1 6195 6427 500472793 500473024 2.250000e-89 340.0
21 TraesCS5D01G080700 chr7D 91.579 95 7 1 2 96 168579929 168580022 5.290000e-26 130.0
22 TraesCS5D01G080700 chr1D 91.857 307 20 3 6197 6502 282132768 282133070 2.170000e-114 424.0
23 TraesCS5D01G080700 chr6D 91.401 314 14 1 6202 6502 417527582 417527895 1.010000e-112 418.0
24 TraesCS5D01G080700 chr3D 90.852 317 15 2 6200 6502 75150754 75151070 4.690000e-111 412.0
25 TraesCS5D01G080700 chr3D 88.254 315 19 8 6204 6502 39170602 39170290 1.720000e-95 361.0
26 TraesCS5D01G080700 chr2B 90.397 302 17 5 6202 6502 706702380 706702090 2.840000e-103 387.0
27 TraesCS5D01G080700 chr2A 87.417 302 22 4 6204 6502 646854213 646853925 3.760000e-87 333.0
28 TraesCS5D01G080700 chr4A 85.311 177 24 2 1001 1176 38363059 38363234 1.440000e-41 182.0
29 TraesCS5D01G080700 chr4A 81.868 182 33 0 4377 4558 38367601 38367782 3.140000e-33 154.0
30 TraesCS5D01G080700 chr4B 84.358 179 28 0 1001 1179 524010864 524010686 6.700000e-40 176.0
31 TraesCS5D01G080700 chr4B 89.583 96 10 0 1 96 463214366 463214271 8.850000e-24 122.0
32 TraesCS5D01G080700 chrUn 92.308 91 7 0 1 91 288726298 288726388 5.290000e-26 130.0
33 TraesCS5D01G080700 chr6A 93.103 87 6 0 2 88 457850382 457850468 1.900000e-25 128.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G080700 chr5D 80698568 80705069 6501 True 12008.0 12008 100.000000 1 6502 1 chr5D.!!$R1 6501
1 TraesCS5D01G080700 chr5B 89627742 89633712 5970 True 4489.0 8593 92.396500 100 6201 2 chr5B.!!$R2 6101
2 TraesCS5D01G080700 chr5A 77084725 77090970 6245 True 2920.7 8360 91.165333 93 6201 3 chr5A.!!$R1 6108

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
299 331 0.669318 TTTGTCTCATCACGCGTCCC 60.669 55.000 9.86 0.00 0.00 4.46 F
1195 1295 0.323542 CGTGTGTACCTCCCTCCTCT 60.324 60.000 0.00 0.00 0.00 3.69 F
1217 1322 0.516439 GTTCTGACTTCTGCTGCTGC 59.484 55.000 8.89 8.89 40.20 5.25 F
2130 2288 0.822944 TAGCAGCCAAGCTTGCAACA 60.823 50.000 21.43 0.46 43.70 3.33 F
2134 2292 1.174712 AGCCAAGCTTGCAACATCGT 61.175 50.000 21.43 0.00 33.89 3.73 F
2541 2699 1.812571 GTCGTCAATCTGGCAATTGGT 59.187 47.619 7.72 0.00 37.27 3.67 F
3831 3989 2.278142 GCGATTGCCCGTGAATGC 60.278 61.111 0.00 0.00 33.98 3.56 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1220 1325 0.251916 TAACTGCAGGGAACGGATGG 59.748 55.000 19.93 0.0 0.00 3.51 R
2994 3152 0.320247 CCAGACTCAGTGTGACTGCC 60.320 60.000 16.04 0.0 45.54 4.85 R
3601 3759 4.201891 GCACAATGTCCTAAGAGCTTCATG 60.202 45.833 0.00 0.0 0.00 3.07 R
3831 3989 3.553096 GGCCATCTTCAGTGAGTATACCG 60.553 52.174 0.00 0.0 0.00 4.02 R
3962 4120 4.674281 AGCACTATTAGGAGGTAAGCAC 57.326 45.455 0.00 0.0 0.00 4.40 R
4708 4875 2.113860 AGTCATCATTGGGTGGTTCG 57.886 50.000 0.00 0.0 0.00 3.95 R
6147 6326 1.407025 CCCTTTTACCTTCGGAGAGGC 60.407 57.143 0.00 0.0 38.43 4.70 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.934023 TGTCCCAAAATAAGTATCTCAAGTTT 57.066 30.769 0.00 0.00 0.00 2.66
26 27 8.792633 TGTCCCAAAATAAGTATCTCAAGTTTG 58.207 33.333 0.00 0.00 0.00 2.93
27 28 8.793592 GTCCCAAAATAAGTATCTCAAGTTTGT 58.206 33.333 0.00 0.00 0.00 2.83
64 65 7.801716 ACAAAATTGTACTAAGCTCAAGACA 57.198 32.000 0.00 0.00 40.16 3.41
65 66 8.396272 ACAAAATTGTACTAAGCTCAAGACAT 57.604 30.769 0.00 0.00 40.16 3.06
66 67 8.850156 ACAAAATTGTACTAAGCTCAAGACATT 58.150 29.630 0.00 0.00 40.16 2.71
67 68 9.683069 CAAAATTGTACTAAGCTCAAGACATTT 57.317 29.630 3.19 0.00 0.00 2.32
76 77 9.507329 ACTAAGCTCAAGACATTTATTTTGAGA 57.493 29.630 15.10 0.00 45.82 3.27
77 78 9.766277 CTAAGCTCAAGACATTTATTTTGAGAC 57.234 33.333 15.10 7.85 45.82 3.36
78 79 6.835914 AGCTCAAGACATTTATTTTGAGACG 58.164 36.000 15.10 0.00 45.82 4.18
79 80 6.024049 GCTCAAGACATTTATTTTGAGACGG 58.976 40.000 15.10 0.00 45.82 4.79
80 81 6.128282 GCTCAAGACATTTATTTTGAGACGGA 60.128 38.462 15.10 0.00 45.82 4.69
81 82 7.364522 TCAAGACATTTATTTTGAGACGGAG 57.635 36.000 0.00 0.00 0.00 4.63
82 83 6.371548 TCAAGACATTTATTTTGAGACGGAGG 59.628 38.462 0.00 0.00 0.00 4.30
83 84 5.186198 AGACATTTATTTTGAGACGGAGGG 58.814 41.667 0.00 0.00 0.00 4.30
84 85 5.045869 AGACATTTATTTTGAGACGGAGGGA 60.046 40.000 0.00 0.00 0.00 4.20
85 86 5.186198 ACATTTATTTTGAGACGGAGGGAG 58.814 41.667 0.00 0.00 0.00 4.30
86 87 4.903045 TTTATTTTGAGACGGAGGGAGT 57.097 40.909 0.00 0.00 0.00 3.85
87 88 6.070424 ACATTTATTTTGAGACGGAGGGAGTA 60.070 38.462 0.00 0.00 0.00 2.59
88 89 6.555463 TTTATTTTGAGACGGAGGGAGTAT 57.445 37.500 0.00 0.00 0.00 2.12
89 90 6.555463 TTATTTTGAGACGGAGGGAGTATT 57.445 37.500 0.00 0.00 0.00 1.89
90 91 7.664552 TTATTTTGAGACGGAGGGAGTATTA 57.335 36.000 0.00 0.00 0.00 0.98
91 92 6.749036 ATTTTGAGACGGAGGGAGTATTAT 57.251 37.500 0.00 0.00 0.00 1.28
129 130 2.262915 GCGGAGTGACCCAGAGTG 59.737 66.667 0.00 0.00 34.64 3.51
175 182 4.946157 CCAGAGGTTAAGCATGTGATTCTT 59.054 41.667 7.52 0.00 0.00 2.52
184 191 2.852143 GCATGTGATTCTTGCGATTCCG 60.852 50.000 0.00 0.00 37.44 4.30
194 201 2.380410 GCGATTCCGTCAGTGCGTT 61.380 57.895 6.29 0.00 38.24 4.84
299 331 0.669318 TTTGTCTCATCACGCGTCCC 60.669 55.000 9.86 0.00 0.00 4.46
301 333 1.215647 GTCTCATCACGCGTCCCTT 59.784 57.895 9.86 0.00 0.00 3.95
302 334 1.078759 GTCTCATCACGCGTCCCTTG 61.079 60.000 9.86 4.73 0.00 3.61
334 366 7.502120 AAATATACTTCCTGTTGCTATGCTG 57.498 36.000 0.00 0.00 0.00 4.41
409 449 4.175489 CGCGGGTCGTCGTCTCAT 62.175 66.667 0.00 0.00 0.00 2.90
410 450 2.816360 CGCGGGTCGTCGTCTCATA 61.816 63.158 0.00 0.00 0.00 2.15
411 451 1.298190 GCGGGTCGTCGTCTCATAC 60.298 63.158 0.00 0.00 0.00 2.39
459 499 6.778834 ATCTATACATGCCATCTCTCTCTG 57.221 41.667 0.00 0.00 0.00 3.35
466 506 4.410481 TGCCATCTCTCTCTGGGTATAT 57.590 45.455 0.00 0.00 32.90 0.86
467 507 4.348486 TGCCATCTCTCTCTGGGTATATC 58.652 47.826 0.00 0.00 32.90 1.63
468 508 4.045207 TGCCATCTCTCTCTGGGTATATCT 59.955 45.833 0.00 0.00 32.90 1.98
469 509 5.254032 TGCCATCTCTCTCTGGGTATATCTA 59.746 44.000 0.00 0.00 32.90 1.98
470 510 6.068557 TGCCATCTCTCTCTGGGTATATCTAT 60.069 42.308 0.00 0.00 32.90 1.98
471 511 6.490040 GCCATCTCTCTCTGGGTATATCTATC 59.510 46.154 0.00 0.00 32.90 2.08
472 512 7.640209 GCCATCTCTCTCTGGGTATATCTATCT 60.640 44.444 0.00 0.00 32.90 1.98
473 513 7.720957 CCATCTCTCTCTGGGTATATCTATCTG 59.279 44.444 0.00 0.00 0.00 2.90
474 514 7.822749 TCTCTCTCTGGGTATATCTATCTGT 57.177 40.000 0.00 0.00 0.00 3.41
475 515 8.919018 TCTCTCTCTGGGTATATCTATCTGTA 57.081 38.462 0.00 0.00 0.00 2.74
476 516 9.514093 TCTCTCTCTGGGTATATCTATCTGTAT 57.486 37.037 0.00 0.00 0.00 2.29
477 517 9.778741 CTCTCTCTGGGTATATCTATCTGTATC 57.221 40.741 0.00 0.00 0.00 2.24
478 518 8.719596 TCTCTCTGGGTATATCTATCTGTATCC 58.280 40.741 0.00 0.00 0.00 2.59
479 519 7.817440 TCTCTGGGTATATCTATCTGTATCCC 58.183 42.308 0.00 0.00 0.00 3.85
480 520 7.633801 TCTCTGGGTATATCTATCTGTATCCCT 59.366 40.741 0.00 0.00 34.14 4.20
481 521 8.188501 TCTGGGTATATCTATCTGTATCCCTT 57.811 38.462 0.00 0.00 34.14 3.95
482 522 8.633724 TCTGGGTATATCTATCTGTATCCCTTT 58.366 37.037 0.00 0.00 34.14 3.11
483 523 9.273137 CTGGGTATATCTATCTGTATCCCTTTT 57.727 37.037 0.00 0.00 34.14 2.27
484 524 9.629649 TGGGTATATCTATCTGTATCCCTTTTT 57.370 33.333 0.00 0.00 34.14 1.94
512 552 5.746656 GCGGGGTATCTATCTCTATCCCTAG 60.747 52.000 0.00 0.00 34.44 3.02
513 553 5.607592 CGGGGTATCTATCTCTATCCCTAGA 59.392 48.000 0.00 0.00 34.44 2.43
601 654 3.244911 CCTCTAAAAGGCACCTTCCTTGA 60.245 47.826 1.61 0.00 45.25 3.02
613 666 5.215160 CACCTTCCTTGAATCTTCGTTTTG 58.785 41.667 0.00 0.00 0.00 2.44
615 668 3.915437 TCCTTGAATCTTCGTTTTGGC 57.085 42.857 0.00 0.00 0.00 4.52
620 673 3.074412 TGAATCTTCGTTTTGGCTCTCC 58.926 45.455 0.00 0.00 0.00 3.71
654 710 1.153823 CTAGTGACGTTGCCGGGAG 60.154 63.158 2.18 0.00 38.78 4.30
666 722 1.305930 GCCGGGAGAAGAAACGCATT 61.306 55.000 2.18 0.00 0.00 3.56
677 733 5.867716 AGAAGAAACGCATTAGTGACGTTAT 59.132 36.000 16.25 8.99 42.68 1.89
678 734 6.367969 AGAAGAAACGCATTAGTGACGTTATT 59.632 34.615 16.25 14.35 42.68 1.40
679 735 7.543172 AGAAGAAACGCATTAGTGACGTTATTA 59.457 33.333 16.25 0.00 42.68 0.98
681 737 8.193250 AGAAACGCATTAGTGACGTTATTAAT 57.807 30.769 16.25 2.75 42.68 1.40
682 738 8.114290 AGAAACGCATTAGTGACGTTATTAATG 58.886 33.333 23.02 23.02 42.68 1.90
684 740 7.528481 ACGCATTAGTGACGTTATTAATGAA 57.472 32.000 28.25 0.08 36.21 2.57
685 741 7.618442 ACGCATTAGTGACGTTATTAATGAAG 58.382 34.615 28.25 23.30 36.21 3.02
686 742 7.490079 ACGCATTAGTGACGTTATTAATGAAGA 59.510 33.333 28.25 0.00 36.21 2.87
733 801 6.976220 GAAAAAGATTTCTCTCGGTACGTAC 58.024 40.000 17.56 17.56 46.36 3.67
734 802 6.805760 GAAAAAGATTTCTCTCGGTACGTACT 59.194 38.462 24.07 1.80 46.36 2.73
735 803 7.965107 GAAAAAGATTTCTCTCGGTACGTACTA 59.035 37.037 24.07 12.45 46.36 1.82
778 846 1.079543 CTCCGGCCTCAGTGACTTG 60.080 63.158 0.00 0.00 0.00 3.16
786 862 1.978580 CCTCAGTGACTTGGGGTACTT 59.021 52.381 0.00 0.00 33.79 2.24
967 1064 3.213402 CGAGGGAGCGAGGAGTCC 61.213 72.222 0.00 0.00 0.00 3.85
1032 1132 1.612739 GGAGGAGAACTTCGGGGGT 60.613 63.158 0.00 0.00 0.00 4.95
1110 1210 2.954611 GTCAAGAACCCCAAGCGC 59.045 61.111 0.00 0.00 0.00 5.92
1189 1289 0.601841 CAACCACGTGTGTACCTCCC 60.602 60.000 15.65 0.00 0.00 4.30
1190 1290 0.761702 AACCACGTGTGTACCTCCCT 60.762 55.000 15.65 0.00 0.00 4.20
1193 1293 0.898789 CACGTGTGTACCTCCCTCCT 60.899 60.000 7.58 0.00 0.00 3.69
1194 1294 0.611340 ACGTGTGTACCTCCCTCCTC 60.611 60.000 0.00 0.00 0.00 3.71
1195 1295 0.323542 CGTGTGTACCTCCCTCCTCT 60.324 60.000 0.00 0.00 0.00 3.69
1197 1297 1.006162 GTGTGTACCTCCCTCCTCTCT 59.994 57.143 0.00 0.00 0.00 3.10
1198 1298 1.006043 TGTGTACCTCCCTCCTCTCTG 59.994 57.143 0.00 0.00 0.00 3.35
1199 1299 1.006162 GTGTACCTCCCTCCTCTCTGT 59.994 57.143 0.00 0.00 0.00 3.41
1200 1300 1.717077 TGTACCTCCCTCCTCTCTGTT 59.283 52.381 0.00 0.00 0.00 3.16
1201 1301 2.291670 TGTACCTCCCTCCTCTCTGTTC 60.292 54.545 0.00 0.00 0.00 3.18
1202 1302 1.089123 ACCTCCCTCCTCTCTGTTCT 58.911 55.000 0.00 0.00 0.00 3.01
1203 1303 1.272985 ACCTCCCTCCTCTCTGTTCTG 60.273 57.143 0.00 0.00 0.00 3.02
1217 1322 0.516439 GTTCTGACTTCTGCTGCTGC 59.484 55.000 8.89 8.89 40.20 5.25
1219 1324 2.357881 TGACTTCTGCTGCTGCCG 60.358 61.111 13.47 6.90 38.71 5.69
1220 1325 3.797546 GACTTCTGCTGCTGCCGC 61.798 66.667 13.47 9.23 38.71 6.53
1223 1328 4.728110 TTCTGCTGCTGCCGCCAT 62.728 61.111 13.49 0.00 38.71 4.40
1235 1340 4.776322 CGCCATCCGTTCCCTGCA 62.776 66.667 0.00 0.00 0.00 4.41
1236 1341 2.825836 GCCATCCGTTCCCTGCAG 60.826 66.667 6.78 6.78 0.00 4.41
1237 1342 2.671070 CCATCCGTTCCCTGCAGT 59.329 61.111 13.81 0.00 0.00 4.40
1245 1350 2.817258 CCGTTCCCTGCAGTTAATTTGA 59.183 45.455 13.81 0.00 0.00 2.69
1257 1362 2.595124 TAATTTGATCCTCTGCGCGA 57.405 45.000 12.10 1.90 0.00 5.87
1262 1367 2.755876 ATCCTCTGCGCGACCTCA 60.756 61.111 12.10 0.00 0.00 3.86
1413 1537 2.436292 CCCAGAGTGCTGCTGCTC 60.436 66.667 17.00 13.08 40.91 4.26
1414 1538 2.814341 CCAGAGTGCTGCTGCTCG 60.814 66.667 17.00 11.49 40.91 5.03
1415 1539 3.488978 CAGAGTGCTGCTGCTCGC 61.489 66.667 17.00 14.41 40.48 5.03
1416 1540 3.693471 AGAGTGCTGCTGCTCGCT 61.693 61.111 17.00 16.41 37.84 4.93
1417 1541 2.741598 GAGTGCTGCTGCTCGCTT 60.742 61.111 17.00 0.00 40.48 4.68
1461 1585 3.408157 TGGTAGGATTGTAGCCCAGTA 57.592 47.619 0.00 0.00 0.00 2.74
1465 1589 2.846950 AGGATTGTAGCCCAGTAACCT 58.153 47.619 0.00 0.00 0.00 3.50
1469 1593 2.241281 TGTAGCCCAGTAACCTGCTA 57.759 50.000 0.00 0.00 37.38 3.49
1519 1643 8.561738 TCTCAAGTGAATTAACCAATTCTACC 57.438 34.615 10.49 1.31 46.87 3.18
1547 1671 1.118356 TTGGAGCATTTTGGGGCGTT 61.118 50.000 0.00 0.00 34.54 4.84
1570 1694 1.685517 TGATCTGCTTCTGAGATCGGG 59.314 52.381 0.00 0.00 46.10 5.14
1648 1790 6.421801 GCATATGACTTCTTTGCACTGTTTTT 59.578 34.615 6.97 0.00 33.58 1.94
1653 1795 7.469260 TGACTTCTTTGCACTGTTTTTAGTAC 58.531 34.615 0.00 0.00 0.00 2.73
1695 1837 1.111277 GCCATAATGGGTGTTGGGAC 58.889 55.000 0.00 0.00 38.19 4.46
1705 1847 1.626825 GGTGTTGGGACTGGCTAGTTA 59.373 52.381 3.47 0.00 37.25 2.24
1719 1861 7.731054 ACTGGCTAGTTAGAAATCCTATTCTG 58.269 38.462 0.00 0.00 39.87 3.02
1907 2055 4.389890 TTGCACAGCTTCATGTTTTCTT 57.610 36.364 0.00 0.00 0.00 2.52
1954 2112 5.793030 ACTAGTATCTAACCATGCCACTC 57.207 43.478 0.00 0.00 0.00 3.51
1966 2124 4.236935 CCATGCCACTCACAAACAAATAC 58.763 43.478 0.00 0.00 0.00 1.89
2130 2288 0.822944 TAGCAGCCAAGCTTGCAACA 60.823 50.000 21.43 0.46 43.70 3.33
2134 2292 1.174712 AGCCAAGCTTGCAACATCGT 61.175 50.000 21.43 0.00 33.89 3.73
2262 2420 3.055094 TGTGGGAAGCTCTTCAAGATACC 60.055 47.826 11.27 3.41 41.20 2.73
2379 2537 3.674997 TGTTGCAAGTATCCTCTTGGTC 58.325 45.455 0.00 0.00 43.26 4.02
2385 2543 4.215613 GCAAGTATCCTCTTGGTCGTTTTT 59.784 41.667 8.22 0.00 43.26 1.94
2538 2696 3.614092 AGATGTCGTCAATCTGGCAATT 58.386 40.909 0.00 0.00 0.00 2.32
2541 2699 1.812571 GTCGTCAATCTGGCAATTGGT 59.187 47.619 7.72 0.00 37.27 3.67
2584 2742 4.281941 GGCTCTTCATTTCTGGGTTTTCTT 59.718 41.667 0.00 0.00 0.00 2.52
2586 2744 5.693555 GCTCTTCATTTCTGGGTTTTCTTTG 59.306 40.000 0.00 0.00 0.00 2.77
2610 2768 5.957771 TGATTAATGAGTCCAGCCTAACT 57.042 39.130 0.00 0.00 0.00 2.24
2643 2801 6.912591 GTGAACCTGTTGTTGTAAATGAAGAG 59.087 38.462 0.00 0.00 37.29 2.85
3420 3578 3.667960 CGAAAGTGGAGCCTTTCAATTCG 60.668 47.826 12.55 3.65 46.91 3.34
3601 3759 8.196771 TCAATGGTATTATTGATGGTTTTGCTC 58.803 33.333 0.00 0.00 40.95 4.26
3831 3989 2.278142 GCGATTGCCCGTGAATGC 60.278 61.111 0.00 0.00 33.98 3.56
3965 4123 8.894768 AATATCCTGTTGACTTCTAATAGTGC 57.105 34.615 0.00 0.00 0.00 4.40
3966 4124 6.552445 ATCCTGTTGACTTCTAATAGTGCT 57.448 37.500 0.00 0.00 0.00 4.40
3967 4125 6.360370 TCCTGTTGACTTCTAATAGTGCTT 57.640 37.500 0.00 0.00 0.00 3.91
3968 4126 7.476540 TCCTGTTGACTTCTAATAGTGCTTA 57.523 36.000 0.00 0.00 0.00 3.09
3969 4127 7.321153 TCCTGTTGACTTCTAATAGTGCTTAC 58.679 38.462 0.00 0.00 0.00 2.34
3970 4128 6.535508 CCTGTTGACTTCTAATAGTGCTTACC 59.464 42.308 0.00 0.00 0.00 2.85
3971 4129 7.241042 TGTTGACTTCTAATAGTGCTTACCT 57.759 36.000 0.00 0.00 0.00 3.08
3972 4130 7.321153 TGTTGACTTCTAATAGTGCTTACCTC 58.679 38.462 0.00 0.00 0.00 3.85
3973 4131 6.466885 TGACTTCTAATAGTGCTTACCTCC 57.533 41.667 0.00 0.00 0.00 4.30
3974 4132 6.195700 TGACTTCTAATAGTGCTTACCTCCT 58.804 40.000 0.00 0.00 0.00 3.69
3975 4133 7.351952 TGACTTCTAATAGTGCTTACCTCCTA 58.648 38.462 0.00 0.00 0.00 2.94
3976 4134 7.837689 TGACTTCTAATAGTGCTTACCTCCTAA 59.162 37.037 0.00 0.00 0.00 2.69
3977 4135 8.785184 ACTTCTAATAGTGCTTACCTCCTAAT 57.215 34.615 0.00 0.00 0.00 1.73
3978 4136 9.878737 ACTTCTAATAGTGCTTACCTCCTAATA 57.121 33.333 0.00 0.00 0.00 0.98
3994 4152 8.399529 ACCTCCTAATAGTGCTTACCATCTATA 58.600 37.037 0.00 0.00 0.00 1.31
4231 4398 7.922699 AAAGAGACCAAGCCTAATCTACTAT 57.077 36.000 0.00 0.00 0.00 2.12
4512 4679 9.221775 CAGTTTCAGTTAACTGTTAATGTTGTC 57.778 33.333 29.83 14.52 46.27 3.18
4708 4875 1.137404 CGCACTTGCATTAGCCACC 59.863 57.895 1.48 0.00 42.21 4.61
4940 5107 3.101643 TCTGCCAGGTATGTCTACTGT 57.898 47.619 0.00 0.00 0.00 3.55
5011 5178 4.208632 CCTACAGAAGGCAAGGCG 57.791 61.111 0.00 0.00 38.97 5.52
5016 5183 1.620822 ACAGAAGGCAAGGCGATTTT 58.379 45.000 0.00 0.00 0.00 1.82
5108 5286 6.212791 AGGTAAATAAACACAGCTGGTAGAGA 59.787 38.462 19.93 0.00 0.00 3.10
5112 5290 3.393089 AACACAGCTGGTAGAGAGTTG 57.607 47.619 19.93 6.14 0.00 3.16
5114 5292 2.560542 ACACAGCTGGTAGAGAGTTGAG 59.439 50.000 19.93 0.00 0.00 3.02
5115 5293 2.560542 CACAGCTGGTAGAGAGTTGAGT 59.439 50.000 19.93 0.00 0.00 3.41
5116 5294 3.759086 CACAGCTGGTAGAGAGTTGAGTA 59.241 47.826 19.93 0.00 0.00 2.59
5117 5295 4.218635 CACAGCTGGTAGAGAGTTGAGTAA 59.781 45.833 19.93 0.00 0.00 2.24
5118 5296 5.020132 ACAGCTGGTAGAGAGTTGAGTAAT 58.980 41.667 19.93 0.00 0.00 1.89
5120 5298 6.095720 ACAGCTGGTAGAGAGTTGAGTAATAC 59.904 42.308 19.93 0.00 0.00 1.89
5121 5299 6.095580 CAGCTGGTAGAGAGTTGAGTAATACA 59.904 42.308 5.57 0.00 0.00 2.29
5123 5301 7.343316 AGCTGGTAGAGAGTTGAGTAATACATT 59.657 37.037 0.00 0.00 0.00 2.71
5124 5302 7.982354 GCTGGTAGAGAGTTGAGTAATACATTT 59.018 37.037 0.00 0.00 0.00 2.32
5130 5308 9.220767 AGAGAGTTGAGTAATACATTTTTCACC 57.779 33.333 0.00 0.00 0.00 4.02
5132 5310 7.119262 AGAGTTGAGTAATACATTTTTCACCCG 59.881 37.037 0.00 0.00 0.00 5.28
5133 5311 5.554822 TGAGTAATACATTTTTCACCCGC 57.445 39.130 0.00 0.00 0.00 6.13
5134 5312 5.004448 TGAGTAATACATTTTTCACCCGCA 58.996 37.500 0.00 0.00 0.00 5.69
5135 5313 5.473846 TGAGTAATACATTTTTCACCCGCAA 59.526 36.000 0.00 0.00 0.00 4.85
5136 5314 6.016192 TGAGTAATACATTTTTCACCCGCAAA 60.016 34.615 0.00 0.00 0.00 3.68
5137 5315 6.750148 AGTAATACATTTTTCACCCGCAAAA 58.250 32.000 0.00 0.00 0.00 2.44
5138 5316 7.210873 AGTAATACATTTTTCACCCGCAAAAA 58.789 30.769 0.00 0.00 37.18 1.94
5174 5352 0.239347 GACATGCAGACCTGTTGTGC 59.761 55.000 10.80 0.00 37.73 4.57
5193 5371 6.072112 TGTGCCAAAGTTCTGAAATAAGAC 57.928 37.500 0.00 0.00 0.00 3.01
5205 5383 9.495754 GTTCTGAAATAAGACTGCACATTATTC 57.504 33.333 0.00 0.00 30.71 1.75
5213 5391 4.876107 AGACTGCACATTATTCTTAACGGG 59.124 41.667 0.00 0.00 0.00 5.28
5414 5592 4.057428 ACGACGCCTCTCACCAGC 62.057 66.667 0.00 0.00 0.00 4.85
5441 5619 3.429141 CTTGCCAGCGTGCTCCTG 61.429 66.667 0.00 0.00 0.00 3.86
5634 5812 3.321968 TGAGAAGAGCTGCACTAGACAAA 59.678 43.478 1.02 0.00 0.00 2.83
5655 5834 5.622770 AATTTTAAAGCCTACGAGTGTGG 57.377 39.130 0.00 0.00 0.00 4.17
5758 5937 4.223700 TCTGTAAGATTGATGTCTGGCTGT 59.776 41.667 0.00 0.00 38.67 4.40
5811 5990 5.642063 GTGGATCGATAAACAGAAACCTGAA 59.358 40.000 0.00 0.00 35.67 3.02
5962 6141 7.993183 TCTTCTAAGATGGTCCCAAATTGATAC 59.007 37.037 0.00 0.00 0.00 2.24
5963 6142 7.451731 TCTAAGATGGTCCCAAATTGATACT 57.548 36.000 0.00 0.00 0.00 2.12
5964 6143 8.561536 TCTAAGATGGTCCCAAATTGATACTA 57.438 34.615 0.00 0.00 0.00 1.82
5972 6151 8.944138 TGGTCCCAAATTGATACTATGAGATAA 58.056 33.333 0.00 0.00 0.00 1.75
6147 6326 4.096984 AGTTTTGAGCAAACACTCCTCTTG 59.903 41.667 0.00 0.00 46.55 3.02
6153 6332 2.421619 CAAACACTCCTCTTGCCTCTC 58.578 52.381 0.00 0.00 0.00 3.20
6236 6540 6.035843 CCAATAGATGGTCCAAATTTTGACG 58.964 40.000 14.31 1.06 44.85 4.35
6237 6541 5.835113 ATAGATGGTCCAAATTTTGACGG 57.165 39.130 14.31 1.67 0.00 4.79
6238 6542 3.496331 AGATGGTCCAAATTTTGACGGT 58.504 40.909 14.31 6.99 0.00 4.83
6239 6543 3.506067 AGATGGTCCAAATTTTGACGGTC 59.494 43.478 14.31 13.77 0.00 4.79
6240 6544 1.957877 TGGTCCAAATTTTGACGGTCC 59.042 47.619 14.31 8.45 0.00 4.46
6241 6545 1.957877 GGTCCAAATTTTGACGGTCCA 59.042 47.619 14.31 0.00 0.00 4.02
6242 6546 2.362717 GGTCCAAATTTTGACGGTCCAA 59.637 45.455 14.31 0.00 0.00 3.53
6243 6547 3.181474 GGTCCAAATTTTGACGGTCCAAA 60.181 43.478 14.31 9.48 34.56 3.28
6244 6548 4.434520 GTCCAAATTTTGACGGTCCAAAA 58.565 39.130 10.72 13.64 46.18 2.44
6245 6549 4.269123 GTCCAAATTTTGACGGTCCAAAAC 59.731 41.667 10.72 2.08 45.32 2.43
6246 6550 3.558006 CCAAATTTTGACGGTCCAAAACC 59.442 43.478 10.72 0.00 45.32 3.27
6254 6558 3.644861 GGTCCAAAACCGGAGATGT 57.355 52.632 9.46 0.00 38.58 3.06
6255 6559 2.773993 GGTCCAAAACCGGAGATGTA 57.226 50.000 9.46 0.00 38.58 2.29
6256 6560 3.062122 GGTCCAAAACCGGAGATGTAA 57.938 47.619 9.46 0.00 38.58 2.41
6257 6561 3.414269 GGTCCAAAACCGGAGATGTAAA 58.586 45.455 9.46 0.00 38.58 2.01
6258 6562 4.014406 GGTCCAAAACCGGAGATGTAAAT 58.986 43.478 9.46 0.00 38.58 1.40
6259 6563 4.461431 GGTCCAAAACCGGAGATGTAAATT 59.539 41.667 9.46 0.00 38.58 1.82
6260 6564 5.047590 GGTCCAAAACCGGAGATGTAAATTT 60.048 40.000 9.46 0.00 38.58 1.82
6261 6565 6.452242 GTCCAAAACCGGAGATGTAAATTTT 58.548 36.000 9.46 0.00 35.10 1.82
6262 6566 6.364976 GTCCAAAACCGGAGATGTAAATTTTG 59.635 38.462 9.46 11.16 35.10 2.44
6263 6567 5.637387 CCAAAACCGGAGATGTAAATTTTGG 59.363 40.000 19.53 19.53 0.00 3.28
6264 6568 6.451393 CAAAACCGGAGATGTAAATTTTGGA 58.549 36.000 9.46 0.00 0.00 3.53
6265 6569 5.638596 AACCGGAGATGTAAATTTTGGAC 57.361 39.130 9.46 0.00 0.00 4.02
6266 6570 4.014406 ACCGGAGATGTAAATTTTGGACC 58.986 43.478 9.46 0.00 0.00 4.46
6267 6571 3.064820 CCGGAGATGTAAATTTTGGACCG 59.935 47.826 0.00 0.00 37.02 4.79
6268 6572 3.486875 CGGAGATGTAAATTTTGGACCGC 60.487 47.826 0.00 0.00 0.00 5.68
6269 6573 3.694566 GGAGATGTAAATTTTGGACCGCT 59.305 43.478 0.00 0.00 0.00 5.52
6270 6574 4.879545 GGAGATGTAAATTTTGGACCGCTA 59.120 41.667 0.00 0.00 0.00 4.26
6271 6575 5.355910 GGAGATGTAAATTTTGGACCGCTAA 59.644 40.000 0.00 0.00 0.00 3.09
6272 6576 6.127842 GGAGATGTAAATTTTGGACCGCTAAA 60.128 38.462 0.00 0.00 0.00 1.85
6273 6577 7.222000 AGATGTAAATTTTGGACCGCTAAAA 57.778 32.000 0.00 0.00 38.56 1.52
6274 6578 7.662897 AGATGTAAATTTTGGACCGCTAAAAA 58.337 30.769 0.00 0.00 37.87 1.94
6275 6579 7.812669 AGATGTAAATTTTGGACCGCTAAAAAG 59.187 33.333 0.00 0.00 37.87 2.27
6276 6580 6.807789 TGTAAATTTTGGACCGCTAAAAAGT 58.192 32.000 0.00 0.00 37.87 2.66
6277 6581 6.697892 TGTAAATTTTGGACCGCTAAAAAGTG 59.302 34.615 0.00 0.00 37.87 3.16
6278 6582 4.929819 ATTTTGGACCGCTAAAAAGTGT 57.070 36.364 0.00 0.00 37.87 3.55
6279 6583 3.701532 TTTGGACCGCTAAAAAGTGTG 57.298 42.857 0.00 0.00 0.00 3.82
6280 6584 2.335316 TGGACCGCTAAAAAGTGTGT 57.665 45.000 0.00 0.00 0.00 3.72
6281 6585 2.645802 TGGACCGCTAAAAAGTGTGTT 58.354 42.857 0.00 0.00 0.00 3.32
6282 6586 3.018149 TGGACCGCTAAAAAGTGTGTTT 58.982 40.909 0.00 0.00 0.00 2.83
6283 6587 3.444388 TGGACCGCTAAAAAGTGTGTTTT 59.556 39.130 0.00 0.00 35.02 2.43
6284 6588 3.794564 GGACCGCTAAAAAGTGTGTTTTG 59.205 43.478 0.00 0.00 32.95 2.44
6285 6589 3.776340 ACCGCTAAAAAGTGTGTTTTGG 58.224 40.909 0.00 0.00 32.95 3.28
6286 6590 3.444388 ACCGCTAAAAAGTGTGTTTTGGA 59.556 39.130 0.00 0.00 32.38 3.53
6287 6591 4.041723 CCGCTAAAAAGTGTGTTTTGGAG 58.958 43.478 0.00 0.00 32.38 3.86
6288 6592 3.485743 CGCTAAAAAGTGTGTTTTGGAGC 59.514 43.478 0.00 7.07 32.38 4.70
6289 6593 4.682787 GCTAAAAAGTGTGTTTTGGAGCT 58.317 39.130 0.00 0.00 32.38 4.09
6290 6594 4.740205 GCTAAAAAGTGTGTTTTGGAGCTC 59.260 41.667 4.71 4.71 32.38 4.09
6291 6595 3.801114 AAAAGTGTGTTTTGGAGCTCC 57.199 42.857 26.78 26.78 0.00 4.70
6292 6596 1.308998 AAGTGTGTTTTGGAGCTCCG 58.691 50.000 27.43 0.00 39.43 4.63
6293 6597 0.468226 AGTGTGTTTTGGAGCTCCGA 59.532 50.000 27.43 23.72 39.43 4.55
6294 6598 1.134220 AGTGTGTTTTGGAGCTCCGAA 60.134 47.619 28.68 28.68 39.43 4.30
6295 6599 1.673920 GTGTGTTTTGGAGCTCCGAAA 59.326 47.619 35.12 35.12 44.84 3.46
6314 6618 2.452600 AAAAGGCCAACTCCAACAGA 57.547 45.000 5.01 0.00 0.00 3.41
6315 6619 2.683211 AAAGGCCAACTCCAACAGAT 57.317 45.000 5.01 0.00 0.00 2.90
6316 6620 1.915141 AAGGCCAACTCCAACAGATG 58.085 50.000 5.01 0.00 0.00 2.90
6327 6631 3.492421 CCAACAGATGGTCCAAATTCG 57.508 47.619 0.00 0.00 44.85 3.34
6328 6632 2.819608 CCAACAGATGGTCCAAATTCGT 59.180 45.455 0.00 0.00 44.85 3.85
6329 6633 3.366273 CCAACAGATGGTCCAAATTCGTG 60.366 47.826 0.00 0.00 44.85 4.35
6330 6634 2.436417 ACAGATGGTCCAAATTCGTGG 58.564 47.619 0.00 0.00 40.33 4.94
6331 6635 2.224769 ACAGATGGTCCAAATTCGTGGT 60.225 45.455 0.00 0.00 39.88 4.16
6332 6636 2.420022 CAGATGGTCCAAATTCGTGGTC 59.580 50.000 0.00 0.00 39.88 4.02
6333 6637 1.743394 GATGGTCCAAATTCGTGGTCC 59.257 52.381 0.00 5.71 44.50 4.46
6334 6638 3.332706 GGTCCAAATTCGTGGTCCA 57.667 52.632 7.37 0.00 43.91 4.02
6335 6639 1.165270 GGTCCAAATTCGTGGTCCAG 58.835 55.000 7.37 0.00 43.91 3.86
6336 6640 1.271163 GGTCCAAATTCGTGGTCCAGA 60.271 52.381 7.37 0.00 43.91 3.86
6337 6641 2.500229 GTCCAAATTCGTGGTCCAGAA 58.500 47.619 0.00 0.00 39.88 3.02
6338 6642 2.484264 GTCCAAATTCGTGGTCCAGAAG 59.516 50.000 0.00 0.00 39.88 2.85
6339 6643 2.370519 TCCAAATTCGTGGTCCAGAAGA 59.629 45.455 0.00 0.00 39.88 2.87
6340 6644 2.744202 CCAAATTCGTGGTCCAGAAGAG 59.256 50.000 0.00 0.00 33.63 2.85
6341 6645 2.100605 AATTCGTGGTCCAGAAGAGC 57.899 50.000 0.00 0.00 43.62 4.09
6347 6651 3.542046 GGTCCAGAAGAGCAACTCC 57.458 57.895 0.00 0.00 42.81 3.85
6348 6652 0.687354 GGTCCAGAAGAGCAACTCCA 59.313 55.000 0.00 0.00 42.81 3.86
6349 6653 1.072331 GGTCCAGAAGAGCAACTCCAA 59.928 52.381 0.00 0.00 42.81 3.53
6350 6654 2.290577 GGTCCAGAAGAGCAACTCCAAT 60.291 50.000 0.00 0.00 42.81 3.16
6351 6655 3.055094 GGTCCAGAAGAGCAACTCCAATA 60.055 47.826 0.00 0.00 42.81 1.90
6352 6656 4.187694 GTCCAGAAGAGCAACTCCAATAG 58.812 47.826 0.00 0.00 0.00 1.73
6353 6657 4.081420 GTCCAGAAGAGCAACTCCAATAGA 60.081 45.833 0.00 0.00 0.00 1.98
6354 6658 4.718774 TCCAGAAGAGCAACTCCAATAGAT 59.281 41.667 0.00 0.00 0.00 1.98
6355 6659 4.815308 CCAGAAGAGCAACTCCAATAGATG 59.185 45.833 0.00 0.00 0.00 2.90
6373 6677 2.114411 GTCCAAAACCGGCCAGGA 59.886 61.111 18.74 0.42 45.00 3.86
6374 6678 1.971695 GTCCAAAACCGGCCAGGAG 60.972 63.158 18.74 0.00 45.00 3.69
6375 6679 3.373565 CCAAAACCGGCCAGGAGC 61.374 66.667 18.74 0.00 45.00 4.70
6400 6704 2.667536 CTGCTGTTCAGCCGCTGT 60.668 61.111 19.77 0.00 35.78 4.40
6401 6705 2.666190 TGCTGTTCAGCCGCTGTC 60.666 61.111 19.77 14.13 32.61 3.51
6402 6706 3.426568 GCTGTTCAGCCGCTGTCC 61.427 66.667 19.77 11.80 32.61 4.02
6403 6707 2.031012 CTGTTCAGCCGCTGTCCA 59.969 61.111 19.77 15.35 32.61 4.02
6404 6708 2.031012 TGTTCAGCCGCTGTCCAG 59.969 61.111 19.77 0.00 32.61 3.86
6415 6719 0.671781 GCTGTCCAGCCACTGTACAG 60.672 60.000 21.44 21.44 46.47 2.74
6416 6720 0.671781 CTGTCCAGCCACTGTACAGC 60.672 60.000 22.90 10.15 40.44 4.40
6417 6721 1.376037 GTCCAGCCACTGTACAGCC 60.376 63.158 22.90 11.27 0.00 4.85
6418 6722 2.434884 CCAGCCACTGTACAGCCG 60.435 66.667 22.90 13.78 0.00 5.52
6419 6723 3.121030 CAGCCACTGTACAGCCGC 61.121 66.667 22.90 22.06 0.00 6.53
6420 6724 3.625897 AGCCACTGTACAGCCGCA 61.626 61.111 27.35 0.00 0.00 5.69
6421 6725 3.423154 GCCACTGTACAGCCGCAC 61.423 66.667 22.90 4.61 0.00 5.34
6422 6726 2.030412 CCACTGTACAGCCGCACA 59.970 61.111 22.90 0.00 0.00 4.57
6423 6727 1.375908 CCACTGTACAGCCGCACAT 60.376 57.895 22.90 0.00 0.00 3.21
6424 6728 0.108377 CCACTGTACAGCCGCACATA 60.108 55.000 22.90 0.00 0.00 2.29
6425 6729 1.473257 CCACTGTACAGCCGCACATAT 60.473 52.381 22.90 0.00 0.00 1.78
6426 6730 2.279741 CACTGTACAGCCGCACATATT 58.720 47.619 22.90 0.00 0.00 1.28
6427 6731 2.677836 CACTGTACAGCCGCACATATTT 59.322 45.455 22.90 0.00 0.00 1.40
6428 6732 2.677836 ACTGTACAGCCGCACATATTTG 59.322 45.455 22.90 0.00 0.00 2.32
6429 6733 2.935849 CTGTACAGCCGCACATATTTGA 59.064 45.455 10.54 0.00 0.00 2.69
6430 6734 3.339141 TGTACAGCCGCACATATTTGAA 58.661 40.909 0.00 0.00 0.00 2.69
6431 6735 3.753797 TGTACAGCCGCACATATTTGAAA 59.246 39.130 0.00 0.00 0.00 2.69
6432 6736 3.932545 ACAGCCGCACATATTTGAAAA 57.067 38.095 0.00 0.00 0.00 2.29
6433 6737 4.454728 ACAGCCGCACATATTTGAAAAT 57.545 36.364 0.00 0.00 0.00 1.82
6434 6738 5.574891 ACAGCCGCACATATTTGAAAATA 57.425 34.783 0.00 0.00 35.52 1.40
6435 6739 5.960113 ACAGCCGCACATATTTGAAAATAA 58.040 33.333 0.00 0.00 34.79 1.40
6436 6740 5.804979 ACAGCCGCACATATTTGAAAATAAC 59.195 36.000 0.00 0.00 34.79 1.89
6437 6741 5.804473 CAGCCGCACATATTTGAAAATAACA 59.196 36.000 0.00 0.00 34.79 2.41
6438 6742 6.476380 CAGCCGCACATATTTGAAAATAACAT 59.524 34.615 0.00 0.00 34.79 2.71
6439 6743 7.647318 CAGCCGCACATATTTGAAAATAACATA 59.353 33.333 0.00 0.00 34.79 2.29
6440 6744 8.194104 AGCCGCACATATTTGAAAATAACATAA 58.806 29.630 0.00 0.00 34.79 1.90
6441 6745 8.812329 GCCGCACATATTTGAAAATAACATAAA 58.188 29.630 0.00 0.00 34.79 1.40
6491 6795 7.921041 ATTACATAGTTCTTCAGATCCAGGA 57.079 36.000 0.00 0.00 0.00 3.86
6492 6796 5.867903 ACATAGTTCTTCAGATCCAGGAG 57.132 43.478 0.00 0.00 0.00 3.69
6493 6797 5.523588 ACATAGTTCTTCAGATCCAGGAGA 58.476 41.667 0.00 0.00 0.00 3.71
6494 6798 6.142498 ACATAGTTCTTCAGATCCAGGAGAT 58.858 40.000 0.00 0.00 38.17 2.75
6495 6799 6.041865 ACATAGTTCTTCAGATCCAGGAGATG 59.958 42.308 0.00 0.00 34.42 2.90
6496 6800 3.134442 AGTTCTTCAGATCCAGGAGATGC 59.866 47.826 0.00 0.00 34.42 3.91
6497 6801 2.755686 TCTTCAGATCCAGGAGATGCA 58.244 47.619 0.00 0.00 34.42 3.96
6498 6802 3.109928 TCTTCAGATCCAGGAGATGCAA 58.890 45.455 0.00 0.00 34.42 4.08
6499 6803 3.715315 TCTTCAGATCCAGGAGATGCAAT 59.285 43.478 0.00 0.00 34.42 3.56
6500 6804 3.487120 TCAGATCCAGGAGATGCAATG 57.513 47.619 0.00 0.00 34.42 2.82
6501 6805 1.880675 CAGATCCAGGAGATGCAATGC 59.119 52.381 0.00 0.00 34.42 3.56
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.792633 CAAACTTGAGATACTTATTTTGGGACA 58.207 33.333 0.00 0.00 0.00 4.02
1 2 8.793592 ACAAACTTGAGATACTTATTTTGGGAC 58.206 33.333 0.00 0.00 0.00 4.46
2 3 8.934023 ACAAACTTGAGATACTTATTTTGGGA 57.066 30.769 0.00 0.00 0.00 4.37
39 40 8.896320 TGTCTTGAGCTTAGTACAATTTTGTA 57.104 30.769 0.00 0.00 42.35 2.41
40 41 7.801716 TGTCTTGAGCTTAGTACAATTTTGT 57.198 32.000 1.08 1.08 44.86 2.83
41 42 9.683069 AAATGTCTTGAGCTTAGTACAATTTTG 57.317 29.630 0.00 0.00 0.00 2.44
50 51 9.507329 TCTCAAAATAAATGTCTTGAGCTTAGT 57.493 29.630 5.91 0.00 42.87 2.24
51 52 9.766277 GTCTCAAAATAAATGTCTTGAGCTTAG 57.234 33.333 5.91 0.00 42.87 2.18
52 53 8.443160 CGTCTCAAAATAAATGTCTTGAGCTTA 58.557 33.333 5.91 0.00 42.87 3.09
53 54 7.301054 CGTCTCAAAATAAATGTCTTGAGCTT 58.699 34.615 5.91 0.00 42.87 3.74
54 55 6.128172 CCGTCTCAAAATAAATGTCTTGAGCT 60.128 38.462 5.91 0.00 42.87 4.09
55 56 6.024049 CCGTCTCAAAATAAATGTCTTGAGC 58.976 40.000 5.91 1.95 42.87 4.26
56 57 7.364522 TCCGTCTCAAAATAAATGTCTTGAG 57.635 36.000 4.63 4.63 43.97 3.02
57 58 6.371548 CCTCCGTCTCAAAATAAATGTCTTGA 59.628 38.462 0.00 0.00 0.00 3.02
58 59 6.403636 CCCTCCGTCTCAAAATAAATGTCTTG 60.404 42.308 0.00 0.00 0.00 3.02
59 60 5.648092 CCCTCCGTCTCAAAATAAATGTCTT 59.352 40.000 0.00 0.00 0.00 3.01
60 61 5.045869 TCCCTCCGTCTCAAAATAAATGTCT 60.046 40.000 0.00 0.00 0.00 3.41
61 62 5.183228 TCCCTCCGTCTCAAAATAAATGTC 58.817 41.667 0.00 0.00 0.00 3.06
62 63 5.174037 TCCCTCCGTCTCAAAATAAATGT 57.826 39.130 0.00 0.00 0.00 2.71
63 64 5.186198 ACTCCCTCCGTCTCAAAATAAATG 58.814 41.667 0.00 0.00 0.00 2.32
64 65 5.437191 ACTCCCTCCGTCTCAAAATAAAT 57.563 39.130 0.00 0.00 0.00 1.40
65 66 4.903045 ACTCCCTCCGTCTCAAAATAAA 57.097 40.909 0.00 0.00 0.00 1.40
66 67 6.555463 AATACTCCCTCCGTCTCAAAATAA 57.445 37.500 0.00 0.00 0.00 1.40
67 68 7.850935 ATAATACTCCCTCCGTCTCAAAATA 57.149 36.000 0.00 0.00 0.00 1.40
68 69 6.749036 ATAATACTCCCTCCGTCTCAAAAT 57.251 37.500 0.00 0.00 0.00 1.82
69 70 6.555463 AATAATACTCCCTCCGTCTCAAAA 57.445 37.500 0.00 0.00 0.00 2.44
70 71 6.555463 AAATAATACTCCCTCCGTCTCAAA 57.445 37.500 0.00 0.00 0.00 2.69
71 72 6.555463 AAAATAATACTCCCTCCGTCTCAA 57.445 37.500 0.00 0.00 0.00 3.02
72 73 6.555463 AAAAATAATACTCCCTCCGTCTCA 57.445 37.500 0.00 0.00 0.00 3.27
113 114 0.393077 AAACACTCTGGGTCACTCCG 59.607 55.000 0.00 0.00 37.00 4.63
175 182 2.809174 CGCACTGACGGAATCGCA 60.809 61.111 0.00 0.00 40.63 5.10
184 191 1.149361 TGGAACACGAACGCACTGAC 61.149 55.000 0.00 0.00 0.00 3.51
435 475 6.154877 CCAGAGAGAGATGGCATGTATAGATT 59.845 42.308 3.81 0.00 0.00 2.40
483 523 6.295688 GGATAGAGATAGATACCCCGCAAAAA 60.296 42.308 0.00 0.00 0.00 1.94
484 524 5.187186 GGATAGAGATAGATACCCCGCAAAA 59.813 44.000 0.00 0.00 0.00 2.44
485 525 4.710375 GGATAGAGATAGATACCCCGCAAA 59.290 45.833 0.00 0.00 0.00 3.68
486 526 4.279145 GGATAGAGATAGATACCCCGCAA 58.721 47.826 0.00 0.00 0.00 4.85
487 527 3.372784 GGGATAGAGATAGATACCCCGCA 60.373 52.174 0.00 0.00 0.00 5.69
488 528 3.117436 AGGGATAGAGATAGATACCCCGC 60.117 52.174 0.00 0.00 37.65 6.13
489 529 4.799715 AGGGATAGAGATAGATACCCCG 57.200 50.000 0.00 0.00 37.65 5.73
490 530 6.622348 ACTCTAGGGATAGAGATAGATACCCC 59.378 46.154 17.00 0.00 44.79 4.95
491 531 7.701257 ACTCTAGGGATAGAGATAGATACCC 57.299 44.000 17.00 0.00 44.79 3.69
519 559 4.914177 AATACTGTAGTCCCCGGAAAAA 57.086 40.909 0.73 0.00 0.00 1.94
520 560 4.914177 AAATACTGTAGTCCCCGGAAAA 57.086 40.909 0.73 0.00 0.00 2.29
521 561 6.610830 TGTATAAATACTGTAGTCCCCGGAAA 59.389 38.462 0.73 0.00 34.41 3.13
522 562 6.040842 GTGTATAAATACTGTAGTCCCCGGAA 59.959 42.308 0.73 0.00 34.41 4.30
523 563 5.536161 GTGTATAAATACTGTAGTCCCCGGA 59.464 44.000 0.73 0.00 34.41 5.14
524 564 5.563475 CGTGTATAAATACTGTAGTCCCCGG 60.563 48.000 0.00 0.00 34.41 5.73
525 565 5.455392 CGTGTATAAATACTGTAGTCCCCG 58.545 45.833 2.07 0.00 34.41 5.73
526 566 5.225642 GCGTGTATAAATACTGTAGTCCCC 58.774 45.833 2.07 0.00 34.41 4.81
527 567 4.913924 CGCGTGTATAAATACTGTAGTCCC 59.086 45.833 0.00 0.00 34.41 4.46
528 568 4.380974 GCGCGTGTATAAATACTGTAGTCC 59.619 45.833 8.43 0.00 34.41 3.85
529 569 4.971830 TGCGCGTGTATAAATACTGTAGTC 59.028 41.667 8.43 0.00 34.41 2.59
530 570 4.923893 TGCGCGTGTATAAATACTGTAGT 58.076 39.130 8.43 0.00 34.41 2.73
531 571 6.448053 AATGCGCGTGTATAAATACTGTAG 57.552 37.500 8.43 0.00 34.41 2.74
532 572 7.927305 TTAATGCGCGTGTATAAATACTGTA 57.073 32.000 8.43 0.00 34.41 2.74
533 573 6.831727 TTAATGCGCGTGTATAAATACTGT 57.168 33.333 8.43 0.00 34.41 3.55
568 616 0.825410 TTTTAGAGGCGCCGGATACA 59.175 50.000 23.20 5.56 0.00 2.29
601 654 2.076863 CGGAGAGCCAAAACGAAGATT 58.923 47.619 0.00 0.00 0.00 2.40
613 666 0.392461 TGCCAATGTAACGGAGAGCC 60.392 55.000 0.00 0.00 0.00 4.70
615 668 1.009829 GCTGCCAATGTAACGGAGAG 58.990 55.000 0.00 0.00 0.00 3.20
620 673 2.094258 CACTAGTGCTGCCAATGTAACG 59.906 50.000 10.54 0.00 0.00 3.18
654 710 4.385244 AACGTCACTAATGCGTTTCTTC 57.615 40.909 0.00 0.00 42.13 2.87
759 827 2.948720 AAGTCACTGAGGCCGGAGC 61.949 63.158 5.05 0.00 38.76 4.70
767 835 2.368875 ACAAGTACCCCAAGTCACTGAG 59.631 50.000 0.00 0.00 0.00 3.35
768 836 2.404559 ACAAGTACCCCAAGTCACTGA 58.595 47.619 0.00 0.00 0.00 3.41
772 840 3.547746 GTCAAACAAGTACCCCAAGTCA 58.452 45.455 0.00 0.00 0.00 3.41
786 862 0.531090 CGGAGTCGTTGGGTCAAACA 60.531 55.000 0.00 0.00 0.00 2.83
1032 1132 0.468226 ACGAGTTCTTGCCCTTGACA 59.532 50.000 0.00 0.00 0.00 3.58
1179 1279 1.006162 ACAGAGAGGAGGGAGGTACAC 59.994 57.143 0.00 0.00 0.00 2.90
1180 1280 1.383963 ACAGAGAGGAGGGAGGTACA 58.616 55.000 0.00 0.00 0.00 2.90
1182 1282 2.024846 CAGAACAGAGAGGAGGGAGGTA 60.025 54.545 0.00 0.00 0.00 3.08
1189 1289 3.367292 GCAGAAGTCAGAACAGAGAGGAG 60.367 52.174 0.00 0.00 0.00 3.69
1190 1290 2.560542 GCAGAAGTCAGAACAGAGAGGA 59.439 50.000 0.00 0.00 0.00 3.71
1193 1293 2.288702 GCAGCAGAAGTCAGAACAGAGA 60.289 50.000 0.00 0.00 0.00 3.10
1194 1294 2.067766 GCAGCAGAAGTCAGAACAGAG 58.932 52.381 0.00 0.00 0.00 3.35
1195 1295 1.690893 AGCAGCAGAAGTCAGAACAGA 59.309 47.619 0.00 0.00 0.00 3.41
1197 1297 1.875009 CAGCAGCAGAAGTCAGAACA 58.125 50.000 0.00 0.00 0.00 3.18
1198 1298 0.516439 GCAGCAGCAGAAGTCAGAAC 59.484 55.000 0.00 0.00 41.58 3.01
1199 1299 0.604780 GGCAGCAGCAGAAGTCAGAA 60.605 55.000 2.65 0.00 44.61 3.02
1200 1300 1.004080 GGCAGCAGCAGAAGTCAGA 60.004 57.895 2.65 0.00 44.61 3.27
1201 1301 2.389020 CGGCAGCAGCAGAAGTCAG 61.389 63.158 2.65 0.00 44.61 3.51
1202 1302 2.357881 CGGCAGCAGCAGAAGTCA 60.358 61.111 2.65 0.00 44.61 3.41
1203 1303 3.797546 GCGGCAGCAGCAGAAGTC 61.798 66.667 13.20 0.00 44.61 3.01
1219 1324 2.825836 CTGCAGGGAACGGATGGC 60.826 66.667 5.57 0.00 0.00 4.40
1220 1325 0.251916 TAACTGCAGGGAACGGATGG 59.748 55.000 19.93 0.00 0.00 3.51
1221 1326 2.107950 TTAACTGCAGGGAACGGATG 57.892 50.000 19.93 0.00 0.00 3.51
1222 1327 3.366052 AATTAACTGCAGGGAACGGAT 57.634 42.857 19.93 0.00 0.00 4.18
1223 1328 2.817258 CAAATTAACTGCAGGGAACGGA 59.183 45.455 19.93 0.00 0.00 4.69
1224 1329 2.817258 TCAAATTAACTGCAGGGAACGG 59.183 45.455 19.93 1.88 0.00 4.44
1225 1330 4.438744 GGATCAAATTAACTGCAGGGAACG 60.439 45.833 19.93 4.38 0.00 3.95
1226 1331 4.706962 AGGATCAAATTAACTGCAGGGAAC 59.293 41.667 19.93 2.74 0.00 3.62
1227 1332 4.934356 AGGATCAAATTAACTGCAGGGAA 58.066 39.130 19.93 11.82 0.00 3.97
1228 1333 4.228210 AGAGGATCAAATTAACTGCAGGGA 59.772 41.667 19.93 1.57 37.82 4.20
1229 1334 4.337555 CAGAGGATCAAATTAACTGCAGGG 59.662 45.833 19.93 0.00 37.82 4.45
1230 1335 4.201990 GCAGAGGATCAAATTAACTGCAGG 60.202 45.833 19.93 0.00 45.33 4.85
1231 1336 4.495349 CGCAGAGGATCAAATTAACTGCAG 60.495 45.833 13.48 13.48 45.99 4.41
1232 1337 3.374988 CGCAGAGGATCAAATTAACTGCA 59.625 43.478 0.77 0.00 45.99 4.41
1233 1338 3.790123 GCGCAGAGGATCAAATTAACTGC 60.790 47.826 0.30 0.00 43.48 4.40
1234 1339 3.544834 CGCGCAGAGGATCAAATTAACTG 60.545 47.826 8.75 0.00 37.82 3.16
1235 1340 2.609459 CGCGCAGAGGATCAAATTAACT 59.391 45.455 8.75 0.00 37.82 2.24
1236 1341 2.607635 TCGCGCAGAGGATCAAATTAAC 59.392 45.455 8.75 0.00 37.82 2.01
1237 1342 2.607635 GTCGCGCAGAGGATCAAATTAA 59.392 45.455 8.75 0.00 37.82 1.40
1245 1350 2.755876 TGAGGTCGCGCAGAGGAT 60.756 61.111 8.75 0.00 0.00 3.24
1333 1457 2.423290 GAATCCCTACGAGCTCCGGC 62.423 65.000 8.47 0.00 43.93 6.13
1469 1593 3.299340 CACGAGGTGTGTAGCTAAACT 57.701 47.619 15.14 0.00 43.88 2.66
1519 1643 3.001127 CCAAAATGCTCCAACAAAACACG 59.999 43.478 0.00 0.00 0.00 4.49
1547 1671 3.429960 CCGATCTCAGAAGCAGATCACAA 60.430 47.826 10.57 0.00 44.61 3.33
1570 1694 2.355010 ATTGGCACTAGCTCCATTCC 57.645 50.000 4.59 0.00 41.70 3.01
1648 1790 5.067413 GCACTAGGATAGCACTGTTGTACTA 59.933 44.000 0.00 0.00 44.39 1.82
1653 1795 3.251479 TGCACTAGGATAGCACTGTTG 57.749 47.619 0.00 0.00 44.39 3.33
1695 1837 7.015682 TCCAGAATAGGATTTCTAACTAGCCAG 59.984 40.741 0.00 0.00 34.21 4.85
1705 1847 9.790344 CAGTGATTATTCCAGAATAGGATTTCT 57.210 33.333 0.72 0.00 37.56 2.52
1719 1861 7.548196 TCGAATTTGGTACAGTGATTATTCC 57.452 36.000 0.00 0.00 42.39 3.01
1768 1916 6.259608 CAGTAACCTCATGAAATAAGAGCAGG 59.740 42.308 0.00 0.00 0.00 4.85
1893 2041 6.978080 TCAAAACTACCAAGAAAACATGAAGC 59.022 34.615 0.00 0.00 0.00 3.86
1946 2104 3.258123 GGGTATTTGTTTGTGAGTGGCAT 59.742 43.478 0.00 0.00 0.00 4.40
1954 2112 1.275010 GCCTGGGGGTATTTGTTTGTG 59.725 52.381 0.00 0.00 34.45 3.33
1966 2124 1.304464 GAAGTTTGAGGCCTGGGGG 60.304 63.158 12.00 0.00 0.00 5.40
2130 2288 2.423898 AAGCCCATCCGTCGACGAT 61.424 57.895 37.65 24.65 43.02 3.73
2134 2292 0.387929 GTATCAAGCCCATCCGTCGA 59.612 55.000 0.00 0.00 0.00 4.20
2262 2420 7.742089 GCGCAAATAGCAAGTATTATAAGAGTG 59.258 37.037 0.30 0.00 46.13 3.51
2274 2432 1.613437 ACAAAGGCGCAAATAGCAAGT 59.387 42.857 10.83 0.00 46.13 3.16
2379 2537 2.031232 CTTGTCGCGGTAACAAAAACG 58.969 47.619 6.13 0.00 36.27 3.60
2385 2543 0.386476 AGTCACTTGTCGCGGTAACA 59.614 50.000 6.13 0.00 0.00 2.41
2538 2696 0.325933 CAGCAGGAACCTGATCACCA 59.674 55.000 22.96 0.00 46.30 4.17
2541 2699 1.211212 CCATCAGCAGGAACCTGATCA 59.789 52.381 22.96 4.99 45.60 2.92
2584 2742 4.922206 AGGCTGGACTCATTAATCAACAA 58.078 39.130 0.00 0.00 0.00 2.83
2586 2744 6.037610 CAGTTAGGCTGGACTCATTAATCAAC 59.962 42.308 0.00 0.00 41.42 3.18
2610 2768 1.837439 ACAACAGGTTCACTCTCACCA 59.163 47.619 0.00 0.00 35.25 4.17
2613 2771 3.627395 ACAACAACAGGTTCACTCTCA 57.373 42.857 0.00 0.00 37.72 3.27
2643 2801 3.364889 CCCGACAAAAGAAAAGGGTTC 57.635 47.619 0.00 0.00 34.36 3.62
2676 2834 1.105759 GCATCTTGCAGGACCCATCC 61.106 60.000 0.00 0.00 44.26 3.51
2775 2933 2.819608 TCCATTAAGTTTGACCTGCAGC 59.180 45.455 8.66 0.00 0.00 5.25
2994 3152 0.320247 CCAGACTCAGTGTGACTGCC 60.320 60.000 16.04 0.00 45.54 4.85
3601 3759 4.201891 GCACAATGTCCTAAGAGCTTCATG 60.202 45.833 0.00 0.00 0.00 3.07
3831 3989 3.553096 GGCCATCTTCAGTGAGTATACCG 60.553 52.174 0.00 0.00 0.00 4.02
3962 4120 4.674281 AGCACTATTAGGAGGTAAGCAC 57.326 45.455 0.00 0.00 0.00 4.40
3963 4121 5.070047 GGTAAGCACTATTAGGAGGTAAGCA 59.930 44.000 0.00 0.00 0.00 3.91
3964 4122 5.070047 TGGTAAGCACTATTAGGAGGTAAGC 59.930 44.000 0.00 0.00 0.00 3.09
3965 4123 6.726490 TGGTAAGCACTATTAGGAGGTAAG 57.274 41.667 0.00 0.00 0.00 2.34
3966 4124 7.073854 AGATGGTAAGCACTATTAGGAGGTAA 58.926 38.462 0.00 0.00 0.00 2.85
3967 4125 6.621394 AGATGGTAAGCACTATTAGGAGGTA 58.379 40.000 0.00 0.00 0.00 3.08
3968 4126 5.468658 AGATGGTAAGCACTATTAGGAGGT 58.531 41.667 0.00 0.00 0.00 3.85
3969 4127 7.726033 ATAGATGGTAAGCACTATTAGGAGG 57.274 40.000 0.00 0.00 0.00 4.30
3971 4129 8.696374 GCATATAGATGGTAAGCACTATTAGGA 58.304 37.037 0.00 0.00 33.26 2.94
3972 4130 8.478066 TGCATATAGATGGTAAGCACTATTAGG 58.522 37.037 0.00 0.00 33.26 2.69
3973 4131 9.875691 TTGCATATAGATGGTAAGCACTATTAG 57.124 33.333 0.00 0.00 33.26 1.73
3974 4132 9.875691 CTTGCATATAGATGGTAAGCACTATTA 57.124 33.333 0.00 0.00 33.26 0.98
3975 4133 8.378565 ACTTGCATATAGATGGTAAGCACTATT 58.621 33.333 0.00 0.00 33.26 1.73
3976 4134 7.911651 ACTTGCATATAGATGGTAAGCACTAT 58.088 34.615 0.00 0.00 33.26 2.12
3977 4135 7.233553 AGACTTGCATATAGATGGTAAGCACTA 59.766 37.037 0.00 0.00 33.26 2.74
3978 4136 6.042552 AGACTTGCATATAGATGGTAAGCACT 59.957 38.462 0.00 0.00 33.26 4.40
3994 4152 5.053145 GGAATTACGAGATGAGACTTGCAT 58.947 41.667 0.00 0.00 0.00 3.96
4512 4679 6.618811 TGAGGAGAAGTTAACTAGTAAAGCG 58.381 40.000 8.92 0.00 0.00 4.68
4577 4744 9.845214 ATAGGAGGGTATGTCATAGAAAGTAAT 57.155 33.333 0.00 0.00 0.00 1.89
4708 4875 2.113860 AGTCATCATTGGGTGGTTCG 57.886 50.000 0.00 0.00 0.00 3.95
4940 5107 5.076873 CAGTGGAAAAGAGGGGATTTACAA 58.923 41.667 0.00 0.00 31.47 2.41
5016 5183 3.611025 AGGGGTTCTTGAAACCATCAA 57.389 42.857 17.91 0.00 45.71 2.57
5108 5286 6.349033 GCGGGTGAAAAATGTATTACTCAACT 60.349 38.462 0.00 0.00 0.00 3.16
5112 5290 5.554822 TGCGGGTGAAAAATGTATTACTC 57.445 39.130 0.00 0.00 0.00 2.59
5114 5292 7.409465 TTTTTGCGGGTGAAAAATGTATTAC 57.591 32.000 0.00 0.00 32.62 1.89
5138 5316 4.615912 GCATGTCGAACTATGCACCTTTTT 60.616 41.667 19.63 0.00 46.72 1.94
5139 5317 3.119849 GCATGTCGAACTATGCACCTTTT 60.120 43.478 19.63 0.00 46.72 2.27
5174 5352 6.145535 GTGCAGTCTTATTTCAGAACTTTGG 58.854 40.000 0.00 0.00 0.00 3.28
5193 5371 4.196193 TCCCCGTTAAGAATAATGTGCAG 58.804 43.478 0.00 0.00 0.00 4.41
5205 5383 2.302157 AGAGTCCAAGTTCCCCGTTAAG 59.698 50.000 0.00 0.00 0.00 1.85
5213 5391 5.669164 AATCTAGTGAGAGTCCAAGTTCC 57.331 43.478 0.00 0.00 34.35 3.62
5414 5592 2.360852 CTGGCAAGCCACTGGAGG 60.361 66.667 10.24 0.00 41.89 4.30
5634 5812 3.439129 GCCACACTCGTAGGCTTTAAAAT 59.561 43.478 0.00 0.00 44.92 1.82
5675 5854 6.317140 CACCAGATACAAATGCTTCATACACT 59.683 38.462 0.00 0.00 0.00 3.55
5681 5860 3.441222 CAGCACCAGATACAAATGCTTCA 59.559 43.478 0.00 0.00 44.01 3.02
5811 5990 3.275999 CGGAATAAAGGGGTCGAAATGT 58.724 45.455 0.00 0.00 0.00 2.71
6147 6326 1.407025 CCCTTTTACCTTCGGAGAGGC 60.407 57.143 0.00 0.00 38.43 4.70
6153 6332 2.302157 AGACACTCCCTTTTACCTTCGG 59.698 50.000 0.00 0.00 0.00 4.30
6213 6517 6.035843 CCGTCAAAATTTGGACCATCTATTG 58.964 40.000 18.17 3.64 0.00 1.90
6214 6518 5.714806 ACCGTCAAAATTTGGACCATCTATT 59.285 36.000 18.17 0.00 0.00 1.73
6215 6519 5.261216 ACCGTCAAAATTTGGACCATCTAT 58.739 37.500 18.17 0.00 0.00 1.98
6216 6520 4.658063 ACCGTCAAAATTTGGACCATCTA 58.342 39.130 18.17 0.00 0.00 1.98
6217 6521 3.496331 ACCGTCAAAATTTGGACCATCT 58.504 40.909 18.17 0.00 0.00 2.90
6218 6522 3.366985 GGACCGTCAAAATTTGGACCATC 60.367 47.826 18.17 15.03 36.50 3.51
6219 6523 2.560981 GGACCGTCAAAATTTGGACCAT 59.439 45.455 18.17 7.90 36.50 3.55
6220 6524 1.957877 GGACCGTCAAAATTTGGACCA 59.042 47.619 18.17 0.00 36.50 4.02
6221 6525 1.957877 TGGACCGTCAAAATTTGGACC 59.042 47.619 18.17 12.12 36.93 4.46
6222 6526 3.719173 TTGGACCGTCAAAATTTGGAC 57.281 42.857 14.77 14.77 0.00 4.02
6223 6527 4.434520 GTTTTGGACCGTCAAAATTTGGA 58.565 39.130 5.83 0.00 44.90 3.53
6224 6528 3.558006 GGTTTTGGACCGTCAAAATTTGG 59.442 43.478 5.83 0.00 44.90 3.28
6225 6529 4.787381 GGTTTTGGACCGTCAAAATTTG 57.213 40.909 1.80 0.00 44.90 2.32
6236 6540 2.773993 TACATCTCCGGTTTTGGACC 57.226 50.000 0.00 0.00 45.55 4.46
6237 6541 5.638596 AATTTACATCTCCGGTTTTGGAC 57.361 39.130 0.00 0.00 33.48 4.02
6238 6542 6.451393 CAAAATTTACATCTCCGGTTTTGGA 58.549 36.000 0.00 0.00 33.68 3.53
6239 6543 5.637387 CCAAAATTTACATCTCCGGTTTTGG 59.363 40.000 19.53 19.53 44.06 3.28
6240 6544 6.364976 GTCCAAAATTTACATCTCCGGTTTTG 59.635 38.462 0.00 7.70 35.79 2.44
6241 6545 6.452242 GTCCAAAATTTACATCTCCGGTTTT 58.548 36.000 0.00 0.00 0.00 2.43
6242 6546 5.047590 GGTCCAAAATTTACATCTCCGGTTT 60.048 40.000 0.00 0.00 0.00 3.27
6243 6547 4.461431 GGTCCAAAATTTACATCTCCGGTT 59.539 41.667 0.00 0.00 0.00 4.44
6244 6548 4.014406 GGTCCAAAATTTACATCTCCGGT 58.986 43.478 0.00 0.00 0.00 5.28
6245 6549 3.064820 CGGTCCAAAATTTACATCTCCGG 59.935 47.826 0.00 0.00 0.00 5.14
6246 6550 3.486875 GCGGTCCAAAATTTACATCTCCG 60.487 47.826 12.00 12.00 37.71 4.63
6247 6551 3.694566 AGCGGTCCAAAATTTACATCTCC 59.305 43.478 0.00 0.00 0.00 3.71
6248 6552 4.965119 AGCGGTCCAAAATTTACATCTC 57.035 40.909 0.00 0.00 0.00 2.75
6249 6553 6.827586 TTTAGCGGTCCAAAATTTACATCT 57.172 33.333 0.00 0.00 0.00 2.90
6250 6554 7.597369 ACTTTTTAGCGGTCCAAAATTTACATC 59.403 33.333 0.00 0.00 0.00 3.06
6251 6555 7.383843 CACTTTTTAGCGGTCCAAAATTTACAT 59.616 33.333 0.00 0.00 0.00 2.29
6252 6556 6.697892 CACTTTTTAGCGGTCCAAAATTTACA 59.302 34.615 0.00 0.00 0.00 2.41
6253 6557 6.698329 ACACTTTTTAGCGGTCCAAAATTTAC 59.302 34.615 0.00 0.00 0.00 2.01
6254 6558 6.697892 CACACTTTTTAGCGGTCCAAAATTTA 59.302 34.615 0.00 0.00 0.00 1.40
6255 6559 5.522097 CACACTTTTTAGCGGTCCAAAATTT 59.478 36.000 0.00 0.00 0.00 1.82
6256 6560 5.047188 CACACTTTTTAGCGGTCCAAAATT 58.953 37.500 0.00 0.00 0.00 1.82
6257 6561 4.098807 ACACACTTTTTAGCGGTCCAAAAT 59.901 37.500 0.00 0.00 0.00 1.82
6258 6562 3.444388 ACACACTTTTTAGCGGTCCAAAA 59.556 39.130 0.00 0.00 0.00 2.44
6259 6563 3.018149 ACACACTTTTTAGCGGTCCAAA 58.982 40.909 0.00 0.00 0.00 3.28
6260 6564 2.645802 ACACACTTTTTAGCGGTCCAA 58.354 42.857 0.00 0.00 0.00 3.53
6261 6565 2.335316 ACACACTTTTTAGCGGTCCA 57.665 45.000 0.00 0.00 0.00 4.02
6262 6566 3.703286 AAACACACTTTTTAGCGGTCC 57.297 42.857 0.00 0.00 0.00 4.46
6263 6567 3.794564 CCAAAACACACTTTTTAGCGGTC 59.205 43.478 0.00 0.00 0.00 4.79
6264 6568 3.444388 TCCAAAACACACTTTTTAGCGGT 59.556 39.130 0.00 0.00 0.00 5.68
6265 6569 4.035278 TCCAAAACACACTTTTTAGCGG 57.965 40.909 0.00 0.00 0.00 5.52
6266 6570 3.485743 GCTCCAAAACACACTTTTTAGCG 59.514 43.478 0.00 0.00 0.00 4.26
6267 6571 4.682787 AGCTCCAAAACACACTTTTTAGC 58.317 39.130 0.00 0.00 32.35 3.09
6268 6572 5.281727 GGAGCTCCAAAACACACTTTTTAG 58.718 41.667 28.43 0.00 35.64 1.85
6269 6573 4.201970 CGGAGCTCCAAAACACACTTTTTA 60.202 41.667 31.67 0.00 35.14 1.52
6270 6574 3.428862 CGGAGCTCCAAAACACACTTTTT 60.429 43.478 31.67 0.00 35.14 1.94
6271 6575 2.099098 CGGAGCTCCAAAACACACTTTT 59.901 45.455 31.67 0.00 35.14 2.27
6272 6576 1.676006 CGGAGCTCCAAAACACACTTT 59.324 47.619 31.67 0.00 35.14 2.66
6273 6577 1.134220 TCGGAGCTCCAAAACACACTT 60.134 47.619 31.67 0.00 35.14 3.16
6274 6578 0.468226 TCGGAGCTCCAAAACACACT 59.532 50.000 31.67 0.00 35.14 3.55
6275 6579 1.305201 TTCGGAGCTCCAAAACACAC 58.695 50.000 31.67 2.06 35.14 3.82
6276 6580 2.045561 TTTCGGAGCTCCAAAACACA 57.954 45.000 31.67 2.12 35.14 3.72
6277 6581 3.430333 TTTTTCGGAGCTCCAAAACAC 57.570 42.857 31.67 3.61 35.14 3.32
6294 6598 2.745968 TCTGTTGGAGTTGGCCTTTTT 58.254 42.857 3.32 0.00 0.00 1.94
6295 6599 2.452600 TCTGTTGGAGTTGGCCTTTT 57.547 45.000 3.32 0.00 0.00 2.27
6296 6600 2.242043 CATCTGTTGGAGTTGGCCTTT 58.758 47.619 3.32 0.00 0.00 3.11
6297 6601 1.915141 CATCTGTTGGAGTTGGCCTT 58.085 50.000 3.32 0.00 0.00 4.35
6298 6602 3.658398 CATCTGTTGGAGTTGGCCT 57.342 52.632 3.32 0.00 0.00 5.19
6308 6612 3.366273 CCACGAATTTGGACCATCTGTTG 60.366 47.826 0.00 0.00 39.24 3.33
6309 6613 2.819608 CCACGAATTTGGACCATCTGTT 59.180 45.455 0.00 0.00 39.24 3.16
6310 6614 2.224769 ACCACGAATTTGGACCATCTGT 60.225 45.455 3.10 0.00 39.24 3.41
6311 6615 2.420022 GACCACGAATTTGGACCATCTG 59.580 50.000 3.10 0.00 39.24 2.90
6312 6616 2.711542 GACCACGAATTTGGACCATCT 58.288 47.619 3.10 0.00 39.24 2.90
6317 6621 2.178912 TCTGGACCACGAATTTGGAC 57.821 50.000 3.10 0.00 39.24 4.02
6318 6622 2.370519 TCTTCTGGACCACGAATTTGGA 59.629 45.455 3.10 0.00 39.24 3.53
6319 6623 2.744202 CTCTTCTGGACCACGAATTTGG 59.256 50.000 0.00 0.00 43.04 3.28
6320 6624 2.160417 GCTCTTCTGGACCACGAATTTG 59.840 50.000 0.00 0.00 0.00 2.32
6321 6625 2.224523 TGCTCTTCTGGACCACGAATTT 60.225 45.455 0.00 0.00 0.00 1.82
6322 6626 1.347707 TGCTCTTCTGGACCACGAATT 59.652 47.619 0.00 0.00 0.00 2.17
6323 6627 0.976641 TGCTCTTCTGGACCACGAAT 59.023 50.000 0.00 0.00 0.00 3.34
6324 6628 0.756294 TTGCTCTTCTGGACCACGAA 59.244 50.000 0.00 0.00 0.00 3.85
6325 6629 0.033504 GTTGCTCTTCTGGACCACGA 59.966 55.000 0.00 0.00 0.00 4.35
6326 6630 0.034059 AGTTGCTCTTCTGGACCACG 59.966 55.000 0.00 0.00 0.00 4.94
6327 6631 1.609320 GGAGTTGCTCTTCTGGACCAC 60.609 57.143 0.00 0.00 0.00 4.16
6328 6632 0.687354 GGAGTTGCTCTTCTGGACCA 59.313 55.000 0.00 0.00 0.00 4.02
6329 6633 0.687354 TGGAGTTGCTCTTCTGGACC 59.313 55.000 0.00 0.00 0.00 4.46
6330 6634 2.550830 TTGGAGTTGCTCTTCTGGAC 57.449 50.000 0.00 0.00 0.00 4.02
6331 6635 4.096681 TCTATTGGAGTTGCTCTTCTGGA 58.903 43.478 0.00 0.00 0.00 3.86
6332 6636 4.478206 TCTATTGGAGTTGCTCTTCTGG 57.522 45.455 0.00 0.00 0.00 3.86
6333 6637 5.987777 CATCTATTGGAGTTGCTCTTCTG 57.012 43.478 0.00 0.00 0.00 3.02
6355 6659 2.989253 CCTGGCCGGTTTTGGACC 60.989 66.667 11.58 0.00 45.55 4.46
6356 6660 1.971695 CTCCTGGCCGGTTTTGGAC 60.972 63.158 11.58 0.00 37.64 4.02
6357 6661 2.434331 CTCCTGGCCGGTTTTGGA 59.566 61.111 11.58 5.39 0.00 3.53
6358 6662 3.373565 GCTCCTGGCCGGTTTTGG 61.374 66.667 11.58 0.51 34.27 3.28
6386 6690 2.031012 TGGACAGCGGCTGAACAG 59.969 61.111 34.70 9.91 35.18 3.16
6387 6691 2.031012 CTGGACAGCGGCTGAACA 59.969 61.111 34.70 27.54 35.18 3.18
6388 6692 3.426568 GCTGGACAGCGGCTGAAC 61.427 66.667 34.70 24.86 45.29 3.18
6399 6703 1.376037 GGCTGTACAGTGGCTGGAC 60.376 63.158 23.44 4.64 44.96 4.02
6400 6704 2.942796 CGGCTGTACAGTGGCTGGA 61.943 63.158 23.44 0.00 35.51 3.86
6401 6705 2.434884 CGGCTGTACAGTGGCTGG 60.435 66.667 23.44 4.16 35.51 4.85
6402 6706 3.121030 GCGGCTGTACAGTGGCTG 61.121 66.667 23.44 16.08 37.52 4.85
6403 6707 3.625897 TGCGGCTGTACAGTGGCT 61.626 61.111 28.30 0.00 32.57 4.75
6404 6708 3.423154 GTGCGGCTGTACAGTGGC 61.423 66.667 23.44 24.03 0.00 5.01
6405 6709 0.108377 TATGTGCGGCTGTACAGTGG 60.108 55.000 23.44 16.11 44.11 4.00
6406 6710 1.939974 ATATGTGCGGCTGTACAGTG 58.060 50.000 23.44 16.97 44.11 3.66
6407 6711 2.677836 CAAATATGTGCGGCTGTACAGT 59.322 45.455 23.44 10.19 44.11 3.55
6408 6712 2.935849 TCAAATATGTGCGGCTGTACAG 59.064 45.455 21.27 18.93 44.11 2.74
6409 6713 2.979240 TCAAATATGTGCGGCTGTACA 58.021 42.857 19.17 19.17 44.99 2.90
6410 6714 4.349663 TTTCAAATATGTGCGGCTGTAC 57.650 40.909 6.84 6.84 0.00 2.90
6411 6715 5.574891 ATTTTCAAATATGTGCGGCTGTA 57.425 34.783 0.00 0.00 0.00 2.74
6412 6716 3.932545 TTTTCAAATATGTGCGGCTGT 57.067 38.095 0.00 0.00 0.00 4.40
6413 6717 5.804473 TGTTATTTTCAAATATGTGCGGCTG 59.196 36.000 0.00 0.00 31.47 4.85
6414 6718 5.960113 TGTTATTTTCAAATATGTGCGGCT 58.040 33.333 0.00 0.00 31.47 5.52
6415 6719 6.826893 ATGTTATTTTCAAATATGTGCGGC 57.173 33.333 0.00 0.00 31.47 6.53
6465 6769 9.434275 TCCTGGATCTGAAGAACTATGTAATAA 57.566 33.333 0.00 0.00 0.00 1.40
6466 6770 9.083422 CTCCTGGATCTGAAGAACTATGTAATA 57.917 37.037 0.00 0.00 0.00 0.98
6467 6771 7.786943 TCTCCTGGATCTGAAGAACTATGTAAT 59.213 37.037 0.00 0.00 0.00 1.89
6468 6772 7.126061 TCTCCTGGATCTGAAGAACTATGTAA 58.874 38.462 0.00 0.00 0.00 2.41
6469 6773 6.673583 TCTCCTGGATCTGAAGAACTATGTA 58.326 40.000 0.00 0.00 0.00 2.29
6470 6774 5.523588 TCTCCTGGATCTGAAGAACTATGT 58.476 41.667 0.00 0.00 0.00 2.29
6471 6775 6.457355 CATCTCCTGGATCTGAAGAACTATG 58.543 44.000 0.00 0.00 31.27 2.23
6472 6776 5.011943 GCATCTCCTGGATCTGAAGAACTAT 59.988 44.000 0.00 0.00 31.27 2.12
6473 6777 4.343526 GCATCTCCTGGATCTGAAGAACTA 59.656 45.833 0.00 0.00 31.27 2.24
6474 6778 3.134442 GCATCTCCTGGATCTGAAGAACT 59.866 47.826 0.00 0.00 31.27 3.01
6475 6779 3.118482 TGCATCTCCTGGATCTGAAGAAC 60.118 47.826 0.00 0.00 31.27 3.01
6476 6780 3.109928 TGCATCTCCTGGATCTGAAGAA 58.890 45.455 0.00 0.00 31.27 2.52
6477 6781 2.755686 TGCATCTCCTGGATCTGAAGA 58.244 47.619 0.00 0.00 31.27 2.87
6478 6782 3.555527 TTGCATCTCCTGGATCTGAAG 57.444 47.619 0.00 0.00 31.27 3.02
6479 6783 3.816994 CATTGCATCTCCTGGATCTGAA 58.183 45.455 0.00 0.00 31.27 3.02
6480 6784 2.486727 GCATTGCATCTCCTGGATCTGA 60.487 50.000 3.15 0.00 31.27 3.27
6481 6785 1.880675 GCATTGCATCTCCTGGATCTG 59.119 52.381 3.15 0.00 31.27 2.90
6482 6786 2.273538 GCATTGCATCTCCTGGATCT 57.726 50.000 3.15 0.00 31.27 2.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.