Multiple sequence alignment - TraesCS5D01G079300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G079300 chr5D 100.000 2700 0 0 1 2700 79895357 79898056 0.000000e+00 4987
1 TraesCS5D01G079300 chr5D 98.171 164 3 0 2537 2700 90876502 90876339 1.220000e-73 287
2 TraesCS5D01G079300 chr5D 98.742 159 2 0 2542 2700 348437896 348437738 1.580000e-72 283
3 TraesCS5D01G079300 chr5D 94.382 178 9 1 2524 2700 490680650 490680827 3.430000e-69 272
4 TraesCS5D01G079300 chrUn 97.404 1695 41 3 1 1694 189394036 189395728 0.000000e+00 2883
5 TraesCS5D01G079300 chrUn 97.086 858 24 1 1687 2543 189395768 189396625 0.000000e+00 1445
6 TraesCS5D01G079300 chr4D 97.344 1694 43 2 1 1694 123414379 123416070 0.000000e+00 2878
7 TraesCS5D01G079300 chr4D 96.966 857 24 2 1687 2543 123416110 123416964 0.000000e+00 1437
8 TraesCS5D01G079300 chr4D 97.576 165 4 0 2536 2700 78239851 78239687 1.580000e-72 283
9 TraesCS5D01G079300 chr5B 97.285 1694 44 2 1 1694 679660394 679662085 0.000000e+00 2872
10 TraesCS5D01G079300 chr5B 96.966 857 26 0 1687 2543 679662125 679662981 0.000000e+00 1439
11 TraesCS5D01G079300 chr2A 97.285 1694 44 2 1 1694 618278459 618276768 0.000000e+00 2872
12 TraesCS5D01G079300 chr7D 97.168 1695 45 3 1 1694 203554849 203553157 0.000000e+00 2861
13 TraesCS5D01G079300 chr7D 97.107 1694 47 2 1 1694 626696993 626695302 0.000000e+00 2856
14 TraesCS5D01G079300 chr7D 97.086 858 23 2 1687 2543 626694547 626693691 0.000000e+00 1445
15 TraesCS5D01G079300 chr7D 96.970 858 25 1 1687 2543 203553117 203552260 0.000000e+00 1439
16 TraesCS5D01G079300 chr7B 97.107 1694 47 2 1 1694 743087696 743089387 0.000000e+00 2856
17 TraesCS5D01G079300 chr7B 96.966 857 26 0 1687 2543 743089427 743090283 0.000000e+00 1439
18 TraesCS5D01G079300 chr5A 97.107 1694 47 2 1 1694 16601426 16599735 0.000000e+00 2856
19 TraesCS5D01G079300 chr5A 96.966 857 26 0 1687 2543 16599695 16598839 0.000000e+00 1439
20 TraesCS5D01G079300 chr6A 97.048 1694 48 2 1 1694 289130127 289131818 0.000000e+00 2850
21 TraesCS5D01G079300 chr7A 97.083 857 25 0 1687 2543 4963070 4963926 0.000000e+00 1445
22 TraesCS5D01G079300 chr6D 96.966 857 26 0 1687 2543 283209470 283210326 0.000000e+00 1439
23 TraesCS5D01G079300 chr4A 99.363 157 1 0 2544 2700 469001762 469001918 4.400000e-73 285
24 TraesCS5D01G079300 chr2D 98.137 161 3 0 2540 2700 605994701 605994541 5.690000e-72 281
25 TraesCS5D01G079300 chr2D 97.546 163 4 0 2538 2700 457027164 457027002 2.050000e-71 279
26 TraesCS5D01G079300 chr1D 95.882 170 5 2 2531 2700 256082391 256082558 9.520000e-70 274
27 TraesCS5D01G079300 chr1D 95.349 172 8 0 2529 2700 371801990 371802161 9.520000e-70 274


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G079300 chr5D 79895357 79898056 2699 False 4987.0 4987 100.0000 1 2700 1 chr5D.!!$F1 2699
1 TraesCS5D01G079300 chrUn 189394036 189396625 2589 False 2164.0 2883 97.2450 1 2543 2 chrUn.!!$F1 2542
2 TraesCS5D01G079300 chr4D 123414379 123416964 2585 False 2157.5 2878 97.1550 1 2543 2 chr4D.!!$F1 2542
3 TraesCS5D01G079300 chr5B 679660394 679662981 2587 False 2155.5 2872 97.1255 1 2543 2 chr5B.!!$F1 2542
4 TraesCS5D01G079300 chr2A 618276768 618278459 1691 True 2872.0 2872 97.2850 1 1694 1 chr2A.!!$R1 1693
5 TraesCS5D01G079300 chr7D 626693691 626696993 3302 True 2150.5 2856 97.0965 1 2543 2 chr7D.!!$R2 2542
6 TraesCS5D01G079300 chr7D 203552260 203554849 2589 True 2150.0 2861 97.0690 1 2543 2 chr7D.!!$R1 2542
7 TraesCS5D01G079300 chr7B 743087696 743090283 2587 False 2147.5 2856 97.0365 1 2543 2 chr7B.!!$F1 2542
8 TraesCS5D01G079300 chr5A 16598839 16601426 2587 True 2147.5 2856 97.0365 1 2543 2 chr5A.!!$R1 2542
9 TraesCS5D01G079300 chr6A 289130127 289131818 1691 False 2850.0 2850 97.0480 1 1694 1 chr6A.!!$F1 1693
10 TraesCS5D01G079300 chr7A 4963070 4963926 856 False 1445.0 1445 97.0830 1687 2543 1 chr7A.!!$F1 856
11 TraesCS5D01G079300 chr6D 283209470 283210326 856 False 1439.0 1439 96.9660 1687 2543 1 chr6D.!!$F1 856

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
303 304 1.512735 AGAATGGGGAGTTAGGGCTC 58.487 55.0 0.0 0.0 34.89 4.70 F
1373 1376 0.035056 CTTTCGGGTCTGGGATGCTT 60.035 55.0 0.0 0.0 0.00 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1438 1441 0.179119 AAATAGGAGCCGGTTCGACG 60.179 55.0 12.54 0.0 0.0 5.12 R
2613 3380 0.036306 AACATTGTGTCCCCCGTCTC 59.964 55.0 0.00 0.0 0.0 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
69 70 7.450014 TCTCTCACAAGACAGAGAAAGATTACT 59.550 37.037 0.00 0.00 41.82 2.24
92 93 8.771521 ACTGATTCATCCAATCCAATTTGATA 57.228 30.769 0.00 0.00 40.44 2.15
190 191 6.070309 GCTATCTATCCAGATCAGGGTTGAAT 60.070 42.308 5.70 0.00 40.81 2.57
241 242 8.225603 ACATAAATCCATTGCGATTAGAAACT 57.774 30.769 0.00 0.00 32.12 2.66
303 304 1.512735 AGAATGGGGAGTTAGGGCTC 58.487 55.000 0.00 0.00 34.89 4.70
370 371 3.914312 TGCGGACTCACTTCTCTTTTAG 58.086 45.455 0.00 0.00 0.00 1.85
416 417 6.828785 AGTTGTCTAATTATGTGGGTGAATCC 59.171 38.462 0.00 0.00 0.00 3.01
502 503 5.148651 ACTAGGAAAGAAGTACGCATTGT 57.851 39.130 0.00 0.00 0.00 2.71
545 546 9.386010 CGATCCTAGTTACTAGTAGCTAATCAT 57.614 37.037 23.90 17.34 32.62 2.45
841 842 9.525826 AAGTCAATCCTTCTTTTTCTGATATGT 57.474 29.630 0.00 0.00 0.00 2.29
849 850 3.520290 TTTTCTGATATGTCGCTCCGT 57.480 42.857 0.00 0.00 0.00 4.69
885 886 1.860078 CACGAGTGGAGCGAAAACC 59.140 57.895 0.00 0.00 0.00 3.27
1015 1016 9.673454 AGGAAAATAAAATGTCAGTTTCGTTAC 57.327 29.630 0.75 0.00 0.00 2.50
1075 1077 3.248363 CGCGCAAATTCTCATTGGATCTA 59.752 43.478 8.75 0.00 0.00 1.98
1259 1261 6.147000 CCATTAACAAAACATCCCCTTTTTCG 59.853 38.462 0.00 0.00 0.00 3.46
1270 1272 1.508632 CCTTTTTCGTCGCTCTTCCA 58.491 50.000 0.00 0.00 0.00 3.53
1272 1274 0.865769 TTTTTCGTCGCTCTTCCAGC 59.134 50.000 0.00 0.00 45.85 4.85
1282 1284 0.320374 CTCTTCCAGCACCGGTACAA 59.680 55.000 6.87 0.00 0.00 2.41
1315 1318 9.442033 GTGCTTTTTCTACTTTGTTTACGTTAT 57.558 29.630 0.00 0.00 0.00 1.89
1322 1325 8.301730 TCTACTTTGTTTACGTTATTGACTGG 57.698 34.615 0.00 0.00 0.00 4.00
1373 1376 0.035056 CTTTCGGGTCTGGGATGCTT 60.035 55.000 0.00 0.00 0.00 3.91
1422 1425 0.112218 ATTTACCTGGGTGCACTGCA 59.888 50.000 17.98 0.00 35.60 4.41
1438 1441 3.495753 CACTGCATTTTCAAAAGCTTCCC 59.504 43.478 0.00 0.00 34.04 3.97
1557 1560 3.071602 AGCATTAGCCGATCTGGTACATT 59.928 43.478 0.00 0.00 43.56 2.71
1568 1571 7.571244 GCCGATCTGGTACATTAATACATGTTG 60.571 40.741 2.30 0.00 41.21 3.33
1570 1573 7.042119 CGATCTGGTACATTAATACATGTTGCA 60.042 37.037 2.30 0.00 38.40 4.08
1810 2575 1.398390 CGGATGCACTGCCTCTTAAAC 59.602 52.381 6.30 0.00 0.00 2.01
1820 2585 4.947388 ACTGCCTCTTAAACACAGAAACAA 59.053 37.500 0.00 0.00 32.67 2.83
1859 2624 4.600062 AGTATAGGGAACTTGCTTTTGGG 58.400 43.478 0.00 0.00 43.67 4.12
1893 2658 7.554959 AAAGTGAATCCCTCTAACACTTCTA 57.445 36.000 0.00 0.00 46.37 2.10
2038 2804 4.740154 TTCAAAGGAAAGAGGGAATGGA 57.260 40.909 0.00 0.00 0.00 3.41
2064 2830 6.493166 AGTTTCCCTCCATTGAACATCAATA 58.507 36.000 5.34 0.00 44.60 1.90
2097 2863 2.770232 AGGTAAAGGAAGGGGTATCACG 59.230 50.000 0.00 0.00 0.00 4.35
2217 2984 4.164413 GGGAGGAGTAGCTCTTGGTTTAAT 59.836 45.833 0.00 0.00 0.00 1.40
2298 3065 5.240183 CACATCTATTTGAATTCCCTGCGAT 59.760 40.000 2.27 0.00 0.00 4.58
2335 3102 2.863809 TGGAGAAAAACCTCTTGAGCC 58.136 47.619 0.00 0.00 33.79 4.70
2381 3148 8.616799 ATTTAAAATATGGGACCTGCCTTTTA 57.383 30.769 0.00 0.00 36.66 1.52
2386 3153 3.252554 TGGGACCTGCCTTTTAAATGT 57.747 42.857 0.00 0.00 36.66 2.71
2487 3254 2.704572 GAGGTCTGGTTCATTGAGGTG 58.295 52.381 0.00 0.00 0.00 4.00
2543 3310 1.595311 TTGGATGGAGTATGGCTGGT 58.405 50.000 0.00 0.00 0.00 4.00
2544 3311 0.839277 TGGATGGAGTATGGCTGGTG 59.161 55.000 0.00 0.00 0.00 4.17
2545 3312 0.839946 GGATGGAGTATGGCTGGTGT 59.160 55.000 0.00 0.00 0.00 4.16
2546 3313 1.202698 GGATGGAGTATGGCTGGTGTC 60.203 57.143 0.00 0.00 0.00 3.67
2547 3314 0.465705 ATGGAGTATGGCTGGTGTCG 59.534 55.000 0.00 0.00 0.00 4.35
2548 3315 1.144057 GGAGTATGGCTGGTGTCGG 59.856 63.158 0.00 0.00 0.00 4.79
2549 3316 1.614241 GGAGTATGGCTGGTGTCGGT 61.614 60.000 0.00 0.00 0.00 4.69
2550 3317 0.460284 GAGTATGGCTGGTGTCGGTG 60.460 60.000 0.00 0.00 0.00 4.94
2551 3318 1.192146 AGTATGGCTGGTGTCGGTGT 61.192 55.000 0.00 0.00 0.00 4.16
2552 3319 0.739813 GTATGGCTGGTGTCGGTGTC 60.740 60.000 0.00 0.00 0.00 3.67
2553 3320 1.188871 TATGGCTGGTGTCGGTGTCA 61.189 55.000 0.00 0.00 0.00 3.58
2554 3321 2.050836 ATGGCTGGTGTCGGTGTCAA 62.051 55.000 0.00 0.00 0.00 3.18
2555 3322 1.525077 GGCTGGTGTCGGTGTCAAA 60.525 57.895 0.00 0.00 0.00 2.69
2556 3323 1.098712 GGCTGGTGTCGGTGTCAAAA 61.099 55.000 0.00 0.00 0.00 2.44
2557 3324 0.028902 GCTGGTGTCGGTGTCAAAAC 59.971 55.000 0.00 0.00 0.00 2.43
2558 3325 0.661020 CTGGTGTCGGTGTCAAAACC 59.339 55.000 0.00 0.00 36.82 3.27
2564 3331 4.563404 GGTGTCAAAACCGGTGGA 57.437 55.556 8.52 3.34 0.00 4.02
2565 3332 3.030415 GGTGTCAAAACCGGTGGAT 57.970 52.632 8.52 0.00 0.00 3.41
2566 3333 0.879090 GGTGTCAAAACCGGTGGATC 59.121 55.000 8.52 4.54 0.00 3.36
2567 3334 1.544759 GGTGTCAAAACCGGTGGATCT 60.545 52.381 8.52 0.00 0.00 2.75
2568 3335 1.804748 GTGTCAAAACCGGTGGATCTC 59.195 52.381 8.52 0.00 0.00 2.75
2569 3336 1.076332 GTCAAAACCGGTGGATCTCG 58.924 55.000 8.52 0.00 0.00 4.04
2573 3340 0.615544 AAACCGGTGGATCTCGGGTA 60.616 55.000 8.52 0.00 46.82 3.69
2574 3341 1.041447 AACCGGTGGATCTCGGGTAG 61.041 60.000 8.52 3.31 45.54 3.18
2575 3342 2.201022 CCGGTGGATCTCGGGTAGG 61.201 68.421 12.54 0.00 42.32 3.18
2576 3343 2.201022 CGGTGGATCTCGGGTAGGG 61.201 68.421 0.00 0.00 0.00 3.53
2577 3344 1.837499 GGTGGATCTCGGGTAGGGG 60.837 68.421 0.00 0.00 0.00 4.79
2578 3345 1.837499 GTGGATCTCGGGTAGGGGG 60.837 68.421 0.00 0.00 0.00 5.40
2579 3346 2.330209 TGGATCTCGGGTAGGGGGT 61.330 63.158 0.00 0.00 0.00 4.95
2580 3347 1.533513 GGATCTCGGGTAGGGGGTC 60.534 68.421 0.00 0.00 0.00 4.46
2581 3348 1.533513 GATCTCGGGTAGGGGGTCC 60.534 68.421 0.00 0.00 0.00 4.46
2582 3349 3.097429 ATCTCGGGTAGGGGGTCCC 62.097 68.421 0.00 0.00 45.90 4.46
2591 3358 4.717313 GGGGGTCCCGAACTGTGC 62.717 72.222 0.48 0.00 36.85 4.57
2593 3360 4.309950 GGGTCCCGAACTGTGCGT 62.310 66.667 7.51 0.00 0.00 5.24
2594 3361 2.737376 GGTCCCGAACTGTGCGTC 60.737 66.667 7.51 0.00 0.00 5.19
2595 3362 2.338984 GTCCCGAACTGTGCGTCT 59.661 61.111 7.51 0.00 0.00 4.18
2596 3363 1.582968 GTCCCGAACTGTGCGTCTA 59.417 57.895 7.51 0.00 0.00 2.59
2597 3364 0.456312 GTCCCGAACTGTGCGTCTAG 60.456 60.000 7.51 0.00 0.00 2.43
2598 3365 1.153823 CCCGAACTGTGCGTCTAGG 60.154 63.158 7.51 0.00 0.00 3.02
2599 3366 1.592400 CCCGAACTGTGCGTCTAGGA 61.592 60.000 7.51 0.00 0.00 2.94
2600 3367 0.456221 CCGAACTGTGCGTCTAGGAT 59.544 55.000 7.51 0.00 0.00 3.24
2601 3368 1.534175 CCGAACTGTGCGTCTAGGATC 60.534 57.143 7.51 0.00 0.00 3.36
2602 3369 1.828832 GAACTGTGCGTCTAGGATCG 58.171 55.000 0.00 0.00 0.00 3.69
2603 3370 1.400846 GAACTGTGCGTCTAGGATCGA 59.599 52.381 0.00 0.00 0.00 3.59
2604 3371 1.681538 ACTGTGCGTCTAGGATCGAT 58.318 50.000 0.00 0.00 0.00 3.59
2605 3372 1.335182 ACTGTGCGTCTAGGATCGATG 59.665 52.381 0.54 0.00 0.00 3.84
2606 3373 0.668535 TGTGCGTCTAGGATCGATGG 59.331 55.000 0.54 0.00 0.00 3.51
2607 3374 0.669077 GTGCGTCTAGGATCGATGGT 59.331 55.000 0.54 0.00 0.00 3.55
2608 3375 1.878088 GTGCGTCTAGGATCGATGGTA 59.122 52.381 0.54 0.00 0.00 3.25
2609 3376 2.292569 GTGCGTCTAGGATCGATGGTAA 59.707 50.000 0.54 0.00 0.00 2.85
2610 3377 3.057456 GTGCGTCTAGGATCGATGGTAAT 60.057 47.826 0.54 0.00 0.00 1.89
2611 3378 4.155462 GTGCGTCTAGGATCGATGGTAATA 59.845 45.833 0.54 0.00 0.00 0.98
2612 3379 4.763279 TGCGTCTAGGATCGATGGTAATAA 59.237 41.667 0.54 0.00 0.00 1.40
2613 3380 5.106277 TGCGTCTAGGATCGATGGTAATAAG 60.106 44.000 0.54 0.00 0.00 1.73
2614 3381 5.123502 GCGTCTAGGATCGATGGTAATAAGA 59.876 44.000 0.54 0.00 0.00 2.10
2615 3382 6.675971 GCGTCTAGGATCGATGGTAATAAGAG 60.676 46.154 0.54 0.00 0.00 2.85
2616 3383 6.594547 CGTCTAGGATCGATGGTAATAAGAGA 59.405 42.308 0.54 0.00 0.00 3.10
2617 3384 7.413219 CGTCTAGGATCGATGGTAATAAGAGAC 60.413 44.444 0.54 2.02 0.00 3.36
2618 3385 5.630661 AGGATCGATGGTAATAAGAGACG 57.369 43.478 0.54 0.00 0.00 4.18
2619 3386 4.459685 AGGATCGATGGTAATAAGAGACGG 59.540 45.833 0.54 0.00 0.00 4.79
2620 3387 4.380655 GGATCGATGGTAATAAGAGACGGG 60.381 50.000 0.54 0.00 0.00 5.28
2621 3388 2.889045 TCGATGGTAATAAGAGACGGGG 59.111 50.000 0.00 0.00 0.00 5.73
2622 3389 2.029290 CGATGGTAATAAGAGACGGGGG 60.029 54.545 0.00 0.00 0.00 5.40
2623 3390 2.852714 TGGTAATAAGAGACGGGGGA 57.147 50.000 0.00 0.00 0.00 4.81
2624 3391 2.391678 TGGTAATAAGAGACGGGGGAC 58.608 52.381 0.00 0.00 0.00 4.46
2625 3392 2.292389 TGGTAATAAGAGACGGGGGACA 60.292 50.000 0.00 0.00 0.00 4.02
2626 3393 2.102084 GGTAATAAGAGACGGGGGACAC 59.898 54.545 0.00 0.00 0.00 3.67
2627 3394 1.946984 AATAAGAGACGGGGGACACA 58.053 50.000 0.00 0.00 0.00 3.72
2628 3395 1.946984 ATAAGAGACGGGGGACACAA 58.053 50.000 0.00 0.00 0.00 3.33
2629 3396 1.946984 TAAGAGACGGGGGACACAAT 58.053 50.000 0.00 0.00 0.00 2.71
2630 3397 0.324943 AAGAGACGGGGGACACAATG 59.675 55.000 0.00 0.00 0.00 2.82
2631 3398 0.836400 AGAGACGGGGGACACAATGT 60.836 55.000 0.00 0.00 0.00 2.71
2632 3399 0.036306 GAGACGGGGGACACAATGTT 59.964 55.000 0.00 0.00 0.00 2.71
2633 3400 0.476771 AGACGGGGGACACAATGTTT 59.523 50.000 0.00 0.00 0.00 2.83
2634 3401 1.700739 AGACGGGGGACACAATGTTTA 59.299 47.619 0.00 0.00 0.00 2.01
2635 3402 1.808343 GACGGGGGACACAATGTTTAC 59.192 52.381 0.00 0.00 0.00 2.01
2636 3403 1.170442 CGGGGGACACAATGTTTACC 58.830 55.000 0.00 0.00 0.00 2.85
2637 3404 1.552578 GGGGGACACAATGTTTACCC 58.447 55.000 11.42 11.42 37.95 3.69
2638 3405 1.203075 GGGGGACACAATGTTTACCCA 60.203 52.381 20.61 0.00 39.39 4.51
2639 3406 2.167662 GGGGACACAATGTTTACCCAG 58.832 52.381 14.80 0.00 38.30 4.45
2640 3407 2.167662 GGGACACAATGTTTACCCAGG 58.832 52.381 12.30 0.00 37.50 4.45
2641 3408 2.490168 GGGACACAATGTTTACCCAGGT 60.490 50.000 12.30 0.00 37.50 4.00
2642 3409 3.227614 GGACACAATGTTTACCCAGGTT 58.772 45.455 0.00 0.00 0.00 3.50
2643 3410 3.254903 GGACACAATGTTTACCCAGGTTC 59.745 47.826 0.00 0.00 0.00 3.62
2644 3411 2.882137 ACACAATGTTTACCCAGGTTCG 59.118 45.455 0.00 0.00 0.00 3.95
2645 3412 2.227865 CACAATGTTTACCCAGGTTCGG 59.772 50.000 0.00 0.00 0.00 4.30
2653 3420 3.787001 CCAGGTTCGGGCCCTCTC 61.787 72.222 22.43 9.34 0.00 3.20
2654 3421 2.685380 CAGGTTCGGGCCCTCTCT 60.685 66.667 22.43 9.12 0.00 3.10
2655 3422 1.381327 CAGGTTCGGGCCCTCTCTA 60.381 63.158 22.43 0.00 0.00 2.43
2656 3423 0.760945 CAGGTTCGGGCCCTCTCTAT 60.761 60.000 22.43 0.00 0.00 1.98
2657 3424 0.760945 AGGTTCGGGCCCTCTCTATG 60.761 60.000 22.43 1.43 0.00 2.23
2658 3425 1.749033 GTTCGGGCCCTCTCTATGG 59.251 63.158 22.43 0.54 0.00 2.74
2659 3426 0.759436 GTTCGGGCCCTCTCTATGGA 60.759 60.000 22.43 3.53 0.00 3.41
2660 3427 0.470080 TTCGGGCCCTCTCTATGGAG 60.470 60.000 22.43 0.00 40.73 3.86
2670 3437 5.278127 CCTCTCTATGGAGGTAATACCCT 57.722 47.826 5.71 0.00 45.65 4.34
2671 3438 6.404426 CCTCTCTATGGAGGTAATACCCTA 57.596 45.833 5.71 0.00 45.65 3.53
2672 3439 6.189133 CCTCTCTATGGAGGTAATACCCTAC 58.811 48.000 5.71 0.00 45.65 3.18
2673 3440 6.011451 CCTCTCTATGGAGGTAATACCCTACT 60.011 46.154 5.71 0.00 45.65 2.57
2674 3441 7.417811 TCTCTATGGAGGTAATACCCTACTT 57.582 40.000 5.71 0.00 39.75 2.24
2675 3442 7.468496 TCTCTATGGAGGTAATACCCTACTTC 58.532 42.308 5.71 0.00 39.75 3.01
2676 3443 6.559429 TCTATGGAGGTAATACCCTACTTCC 58.441 44.000 5.71 6.77 44.47 3.46
2677 3444 4.913154 TGGAGGTAATACCCTACTTCCT 57.087 45.455 13.63 0.00 44.50 3.36
2678 3445 4.553678 TGGAGGTAATACCCTACTTCCTG 58.446 47.826 13.63 0.00 44.50 3.86
2679 3446 3.324268 GGAGGTAATACCCTACTTCCTGC 59.676 52.174 5.71 0.00 42.18 4.85
2680 3447 4.224762 GAGGTAATACCCTACTTCCTGCT 58.775 47.826 5.71 0.00 39.75 4.24
2681 3448 4.632292 AGGTAATACCCTACTTCCTGCTT 58.368 43.478 5.71 0.00 39.75 3.91
2682 3449 4.409247 AGGTAATACCCTACTTCCTGCTTG 59.591 45.833 5.71 0.00 39.75 4.01
2683 3450 4.407945 GGTAATACCCTACTTCCTGCTTGA 59.592 45.833 0.00 0.00 30.04 3.02
2684 3451 5.071923 GGTAATACCCTACTTCCTGCTTGAT 59.928 44.000 0.00 0.00 30.04 2.57
2685 3452 5.717119 AATACCCTACTTCCTGCTTGATT 57.283 39.130 0.00 0.00 0.00 2.57
2686 3453 3.356529 ACCCTACTTCCTGCTTGATTG 57.643 47.619 0.00 0.00 0.00 2.67
2687 3454 2.912956 ACCCTACTTCCTGCTTGATTGA 59.087 45.455 0.00 0.00 0.00 2.57
2688 3455 3.525199 ACCCTACTTCCTGCTTGATTGAT 59.475 43.478 0.00 0.00 0.00 2.57
2689 3456 4.133078 CCCTACTTCCTGCTTGATTGATC 58.867 47.826 0.00 0.00 0.00 2.92
2690 3457 4.141528 CCCTACTTCCTGCTTGATTGATCT 60.142 45.833 0.00 0.00 0.00 2.75
2691 3458 5.435291 CCTACTTCCTGCTTGATTGATCTT 58.565 41.667 0.00 0.00 0.00 2.40
2692 3459 5.296283 CCTACTTCCTGCTTGATTGATCTTG 59.704 44.000 0.00 0.00 0.00 3.02
2693 3460 4.914983 ACTTCCTGCTTGATTGATCTTGA 58.085 39.130 0.00 0.00 0.00 3.02
2694 3461 5.507637 ACTTCCTGCTTGATTGATCTTGAT 58.492 37.500 0.00 0.00 0.00 2.57
2695 3462 5.357314 ACTTCCTGCTTGATTGATCTTGATG 59.643 40.000 0.00 0.00 0.00 3.07
2696 3463 5.106876 TCCTGCTTGATTGATCTTGATGA 57.893 39.130 0.00 0.00 0.00 2.92
2697 3464 5.503002 TCCTGCTTGATTGATCTTGATGAA 58.497 37.500 0.00 0.00 0.00 2.57
2698 3465 6.127101 TCCTGCTTGATTGATCTTGATGAAT 58.873 36.000 0.00 0.00 0.00 2.57
2699 3466 7.284820 TCCTGCTTGATTGATCTTGATGAATA 58.715 34.615 0.00 0.00 0.00 1.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
69 70 9.423964 TCTTATCAAATTGGATTGGATGAATCA 57.576 29.630 0.00 0.00 42.22 2.57
111 112 6.093633 GTCAAGGAAAGGTTTCGCTATACAAT 59.906 38.462 0.00 0.00 38.06 2.71
190 191 1.614996 TGGCTTTTCCATTCGCTTCA 58.385 45.000 0.00 0.00 40.72 3.02
241 242 1.960471 GCCCTGGCTGTAGAGTCACTA 60.960 57.143 0.00 0.00 38.26 2.74
303 304 1.980052 TGGCTACAGAGGAAACCGG 59.020 57.895 0.00 0.00 0.00 5.28
370 371 7.342026 ACAACTTGGATAATAAAAGTCATCCCC 59.658 37.037 0.00 0.00 36.85 4.81
400 401 5.708736 TGTACTGGATTCACCCACATAAT 57.291 39.130 0.00 0.00 38.00 1.28
404 405 2.439880 TGTTGTACTGGATTCACCCACA 59.560 45.455 0.00 0.00 38.00 4.17
416 417 4.302455 CTCTGACCTGACTTGTTGTACTG 58.698 47.826 0.00 0.00 0.00 2.74
502 503 3.807622 GGATCGTTCAAACAGTCAGTCAA 59.192 43.478 0.00 0.00 0.00 3.18
545 546 1.982395 CGGCCACCCTACTCTGACA 60.982 63.158 2.24 0.00 0.00 3.58
587 588 4.884164 AGTAGAGTCTGTGCTTTGCTTTTT 59.116 37.500 1.86 0.00 0.00 1.94
802 803 3.181458 GGATTGACTTTCTATACGGGCCA 60.181 47.826 4.39 0.00 0.00 5.36
849 850 0.391228 TGCGTGTCACTCCTTGCTTA 59.609 50.000 0.65 0.00 0.00 3.09
873 874 0.667993 CTTGCTTGGTTTTCGCTCCA 59.332 50.000 0.00 0.00 0.00 3.86
885 886 0.811281 GACGGAATTCCCCTTGCTTG 59.189 55.000 19.01 4.63 0.00 4.01
910 911 1.474077 AGGATTTCGCATGCTTTCCAC 59.526 47.619 17.13 2.14 0.00 4.02
1075 1077 3.074412 CCATCGCTGTTAAGAACAACCT 58.926 45.455 0.00 0.00 41.61 3.50
1221 1223 7.342284 TGTTTTGTTAATGGGAACAAGGAACTA 59.658 33.333 13.50 3.49 46.88 2.24
1270 1272 2.035321 CACCAATTTTTGTACCGGTGCT 59.965 45.455 23.67 0.00 37.68 4.40
1272 1274 2.035321 AGCACCAATTTTTGTACCGGTG 59.965 45.455 19.93 0.00 45.36 4.94
1282 1284 8.560355 AACAAAGTAGAAAAAGCACCAATTTT 57.440 26.923 0.00 0.00 0.00 1.82
1363 1366 4.520492 ACAGAAGTTAAACAAGCATCCCAG 59.480 41.667 0.00 0.00 0.00 4.45
1422 1425 2.882137 TCGACGGGAAGCTTTTGAAAAT 59.118 40.909 0.00 0.00 0.00 1.82
1438 1441 0.179119 AAATAGGAGCCGGTTCGACG 60.179 55.000 12.54 0.00 0.00 5.12
1502 1505 3.006940 GCGATGTATTCCACCAGTTGAA 58.993 45.455 0.00 0.00 0.00 2.69
1557 1560 5.453057 GGAATGGGCATTGCAACATGTATTA 60.453 40.000 15.81 0.00 38.74 0.98
1568 1571 2.093341 ACAAGATTGGAATGGGCATTGC 60.093 45.455 0.00 0.00 39.25 3.56
1570 1573 3.716431 AGACAAGATTGGAATGGGCATT 58.284 40.909 0.00 0.00 0.00 3.56
1757 2522 6.097129 TCGAACCTACTTTTTGACCCAATTTT 59.903 34.615 0.00 0.00 0.00 1.82
1761 2526 4.153673 TCGAACCTACTTTTTGACCCAA 57.846 40.909 0.00 0.00 0.00 4.12
1810 2575 4.207165 TCTTTCCCTCCTTTGTTTCTGTG 58.793 43.478 0.00 0.00 0.00 3.66
1820 2585 6.144625 CCTATACTACCTTCTTTCCCTCCTT 58.855 44.000 0.00 0.00 0.00 3.36
1859 2624 6.342111 AGAGGGATTCACTTTCGATAAGAAC 58.658 40.000 12.35 0.82 38.83 3.01
1926 2691 7.012421 AGTGACTAAGGATTTTCACACTTGTTC 59.988 37.037 3.61 0.00 40.44 3.18
2038 2804 5.147032 TGATGTTCAATGGAGGGAAACTTT 58.853 37.500 0.00 0.00 0.00 2.66
2064 2830 8.503573 CCCCTTCCTTTACCTATTTCTAGATTT 58.496 37.037 0.00 0.00 0.00 2.17
2089 2855 4.160642 AGAAAAATACCCCCGTGATACC 57.839 45.455 0.00 0.00 0.00 2.73
2217 2984 2.435805 CGATCCATCTCCTCCCTTTTCA 59.564 50.000 0.00 0.00 0.00 2.69
2298 3065 5.932619 TCTCCATACGAGAAATCCTTCAA 57.067 39.130 0.00 0.00 44.94 2.69
2360 3127 6.943899 TTTAAAAGGCAGGTCCCATATTTT 57.056 33.333 0.00 0.00 34.51 1.82
2381 3148 0.887933 GTTGCCGGGATGTCACATTT 59.112 50.000 2.18 0.00 0.00 2.32
2386 3153 2.350895 CCTGTTGCCGGGATGTCA 59.649 61.111 2.18 0.00 39.78 3.58
2410 3177 2.741553 CGAGTACTTGGCCACATGCATA 60.742 50.000 3.88 0.00 43.89 3.14
2487 3254 4.156556 TGCTAAAGGTTTCATGTGATGCTC 59.843 41.667 0.00 0.00 0.00 4.26
2547 3314 0.879090 GATCCACCGGTTTTGACACC 59.121 55.000 2.97 0.00 0.00 4.16
2548 3315 1.804748 GAGATCCACCGGTTTTGACAC 59.195 52.381 2.97 0.65 0.00 3.67
2549 3316 1.606994 CGAGATCCACCGGTTTTGACA 60.607 52.381 2.97 0.00 0.00 3.58
2550 3317 1.076332 CGAGATCCACCGGTTTTGAC 58.924 55.000 2.97 0.00 0.00 3.18
2551 3318 0.036765 CCGAGATCCACCGGTTTTGA 60.037 55.000 2.97 1.75 40.78 2.69
2552 3319 1.024579 CCCGAGATCCACCGGTTTTG 61.025 60.000 2.97 0.00 43.93 2.44
2553 3320 1.298667 CCCGAGATCCACCGGTTTT 59.701 57.895 2.97 0.00 43.93 2.43
2554 3321 0.615544 TACCCGAGATCCACCGGTTT 60.616 55.000 2.97 0.00 43.93 3.27
2555 3322 1.000739 TACCCGAGATCCACCGGTT 59.999 57.895 2.97 0.00 43.93 4.44
2556 3323 1.455217 CTACCCGAGATCCACCGGT 60.455 63.158 0.00 0.00 43.93 5.28
2557 3324 2.201022 CCTACCCGAGATCCACCGG 61.201 68.421 0.00 0.00 44.94 5.28
2558 3325 2.201022 CCCTACCCGAGATCCACCG 61.201 68.421 0.00 0.00 0.00 4.94
2559 3326 1.837499 CCCCTACCCGAGATCCACC 60.837 68.421 0.00 0.00 0.00 4.61
2560 3327 1.837499 CCCCCTACCCGAGATCCAC 60.837 68.421 0.00 0.00 0.00 4.02
2561 3328 2.308118 GACCCCCTACCCGAGATCCA 62.308 65.000 0.00 0.00 0.00 3.41
2562 3329 1.533513 GACCCCCTACCCGAGATCC 60.534 68.421 0.00 0.00 0.00 3.36
2563 3330 1.533513 GGACCCCCTACCCGAGATC 60.534 68.421 0.00 0.00 0.00 2.75
2564 3331 2.613421 GGACCCCCTACCCGAGAT 59.387 66.667 0.00 0.00 0.00 2.75
2565 3332 3.759101 GGGACCCCCTACCCGAGA 61.759 72.222 0.00 0.00 41.34 4.04
2569 3336 3.085947 GTTCGGGACCCCCTACCC 61.086 72.222 4.46 0.00 42.67 3.69
2570 3337 2.040114 AGTTCGGGACCCCCTACC 59.960 66.667 4.46 0.00 42.67 3.18
2571 3338 1.611556 ACAGTTCGGGACCCCCTAC 60.612 63.158 4.46 0.29 42.67 3.18
2572 3339 1.611261 CACAGTTCGGGACCCCCTA 60.611 63.158 4.46 0.00 42.67 3.53
2573 3340 2.928396 CACAGTTCGGGACCCCCT 60.928 66.667 4.46 0.00 42.67 4.79
2574 3341 4.717313 GCACAGTTCGGGACCCCC 62.717 72.222 4.46 0.00 41.09 5.40
2576 3343 4.309950 ACGCACAGTTCGGGACCC 62.310 66.667 0.00 0.00 0.00 4.46
2577 3344 1.870055 TAGACGCACAGTTCGGGACC 61.870 60.000 0.00 0.00 0.00 4.46
2578 3345 0.456312 CTAGACGCACAGTTCGGGAC 60.456 60.000 0.00 0.00 0.00 4.46
2579 3346 1.592400 CCTAGACGCACAGTTCGGGA 61.592 60.000 0.00 0.00 0.00 5.14
2580 3347 1.153823 CCTAGACGCACAGTTCGGG 60.154 63.158 0.00 0.00 0.00 5.14
2581 3348 0.456221 ATCCTAGACGCACAGTTCGG 59.544 55.000 0.00 0.00 0.00 4.30
2582 3349 1.828832 GATCCTAGACGCACAGTTCG 58.171 55.000 0.00 0.00 0.00 3.95
2583 3350 1.400846 TCGATCCTAGACGCACAGTTC 59.599 52.381 0.00 0.00 0.00 3.01
2584 3351 1.460504 TCGATCCTAGACGCACAGTT 58.539 50.000 0.00 0.00 0.00 3.16
2585 3352 1.335182 CATCGATCCTAGACGCACAGT 59.665 52.381 0.00 0.00 0.00 3.55
2586 3353 1.335415 CCATCGATCCTAGACGCACAG 60.335 57.143 0.00 0.00 0.00 3.66
2587 3354 0.668535 CCATCGATCCTAGACGCACA 59.331 55.000 0.00 0.00 0.00 4.57
2588 3355 0.669077 ACCATCGATCCTAGACGCAC 59.331 55.000 0.00 0.00 0.00 5.34
2589 3356 2.265589 TACCATCGATCCTAGACGCA 57.734 50.000 0.00 0.00 0.00 5.24
2590 3357 3.851976 ATTACCATCGATCCTAGACGC 57.148 47.619 0.00 0.00 0.00 5.19
2591 3358 6.594547 TCTCTTATTACCATCGATCCTAGACG 59.405 42.308 0.00 0.00 0.00 4.18
2592 3359 7.413219 CGTCTCTTATTACCATCGATCCTAGAC 60.413 44.444 0.00 0.00 0.00 2.59
2593 3360 6.594547 CGTCTCTTATTACCATCGATCCTAGA 59.405 42.308 0.00 0.00 0.00 2.43
2594 3361 6.183360 CCGTCTCTTATTACCATCGATCCTAG 60.183 46.154 0.00 0.00 0.00 3.02
2595 3362 5.646793 CCGTCTCTTATTACCATCGATCCTA 59.353 44.000 0.00 0.00 0.00 2.94
2596 3363 4.459685 CCGTCTCTTATTACCATCGATCCT 59.540 45.833 0.00 0.00 0.00 3.24
2597 3364 4.380655 CCCGTCTCTTATTACCATCGATCC 60.381 50.000 0.00 0.00 0.00 3.36
2598 3365 4.380655 CCCCGTCTCTTATTACCATCGATC 60.381 50.000 0.00 0.00 0.00 3.69
2599 3366 3.510360 CCCCGTCTCTTATTACCATCGAT 59.490 47.826 0.00 0.00 0.00 3.59
2600 3367 2.889045 CCCCGTCTCTTATTACCATCGA 59.111 50.000 0.00 0.00 0.00 3.59
2601 3368 2.029290 CCCCCGTCTCTTATTACCATCG 60.029 54.545 0.00 0.00 0.00 3.84
2602 3369 3.006644 GTCCCCCGTCTCTTATTACCATC 59.993 52.174 0.00 0.00 0.00 3.51
2603 3370 2.970640 GTCCCCCGTCTCTTATTACCAT 59.029 50.000 0.00 0.00 0.00 3.55
2604 3371 2.292389 TGTCCCCCGTCTCTTATTACCA 60.292 50.000 0.00 0.00 0.00 3.25
2605 3372 2.102084 GTGTCCCCCGTCTCTTATTACC 59.898 54.545 0.00 0.00 0.00 2.85
2606 3373 2.762327 TGTGTCCCCCGTCTCTTATTAC 59.238 50.000 0.00 0.00 0.00 1.89
2607 3374 3.104519 TGTGTCCCCCGTCTCTTATTA 57.895 47.619 0.00 0.00 0.00 0.98
2608 3375 1.946984 TGTGTCCCCCGTCTCTTATT 58.053 50.000 0.00 0.00 0.00 1.40
2609 3376 1.946984 TTGTGTCCCCCGTCTCTTAT 58.053 50.000 0.00 0.00 0.00 1.73
2610 3377 1.553248 CATTGTGTCCCCCGTCTCTTA 59.447 52.381 0.00 0.00 0.00 2.10
2611 3378 0.324943 CATTGTGTCCCCCGTCTCTT 59.675 55.000 0.00 0.00 0.00 2.85
2612 3379 0.836400 ACATTGTGTCCCCCGTCTCT 60.836 55.000 0.00 0.00 0.00 3.10
2613 3380 0.036306 AACATTGTGTCCCCCGTCTC 59.964 55.000 0.00 0.00 0.00 3.36
2614 3381 0.476771 AAACATTGTGTCCCCCGTCT 59.523 50.000 0.00 0.00 0.00 4.18
2615 3382 1.808343 GTAAACATTGTGTCCCCCGTC 59.192 52.381 0.00 0.00 0.00 4.79
2616 3383 1.546099 GGTAAACATTGTGTCCCCCGT 60.546 52.381 0.00 0.00 0.00 5.28
2617 3384 1.170442 GGTAAACATTGTGTCCCCCG 58.830 55.000 0.00 0.00 0.00 5.73
2618 3385 1.203075 TGGGTAAACATTGTGTCCCCC 60.203 52.381 5.22 6.45 33.96 5.40
2619 3386 2.167662 CTGGGTAAACATTGTGTCCCC 58.832 52.381 16.40 10.25 34.88 4.81
2620 3387 2.167662 CCTGGGTAAACATTGTGTCCC 58.832 52.381 13.79 13.79 35.85 4.46
2621 3388 2.871453 ACCTGGGTAAACATTGTGTCC 58.129 47.619 0.00 0.00 0.00 4.02
2622 3389 3.058501 CGAACCTGGGTAAACATTGTGTC 60.059 47.826 0.00 0.00 0.00 3.67
2623 3390 2.882137 CGAACCTGGGTAAACATTGTGT 59.118 45.455 0.00 0.00 0.00 3.72
2624 3391 2.227865 CCGAACCTGGGTAAACATTGTG 59.772 50.000 0.00 0.00 0.00 3.33
2625 3392 2.510613 CCGAACCTGGGTAAACATTGT 58.489 47.619 0.00 0.00 0.00 2.71
2626 3393 1.816224 CCCGAACCTGGGTAAACATTG 59.184 52.381 0.00 0.00 44.76 2.82
2627 3394 2.209690 CCCGAACCTGGGTAAACATT 57.790 50.000 0.00 0.00 44.76 2.71
2628 3395 3.970205 CCCGAACCTGGGTAAACAT 57.030 52.632 0.00 0.00 44.76 2.71
2636 3403 2.873557 TAGAGAGGGCCCGAACCTGG 62.874 65.000 18.44 0.00 38.79 4.45
2637 3404 0.760945 ATAGAGAGGGCCCGAACCTG 60.761 60.000 18.44 0.00 38.79 4.00
2638 3405 0.760945 CATAGAGAGGGCCCGAACCT 60.761 60.000 18.44 14.71 42.18 3.50
2639 3406 1.749033 CATAGAGAGGGCCCGAACC 59.251 63.158 18.44 7.31 0.00 3.62
2640 3407 0.759436 TCCATAGAGAGGGCCCGAAC 60.759 60.000 18.44 12.45 0.00 3.95
2641 3408 0.470080 CTCCATAGAGAGGGCCCGAA 60.470 60.000 18.44 0.98 43.39 4.30
2642 3409 1.153989 CTCCATAGAGAGGGCCCGA 59.846 63.158 18.44 3.54 43.39 5.14
2643 3410 3.784573 CTCCATAGAGAGGGCCCG 58.215 66.667 18.44 0.00 43.39 6.13
2649 3416 7.034967 AGTAGGGTATTACCTCCATAGAGAG 57.965 44.000 12.54 0.00 43.39 3.20
2650 3417 7.417811 AAGTAGGGTATTACCTCCATAGAGA 57.582 40.000 12.54 0.00 43.39 3.10
2651 3418 6.664384 GGAAGTAGGGTATTACCTCCATAGAG 59.336 46.154 12.54 0.00 42.09 2.43
2652 3419 6.337472 AGGAAGTAGGGTATTACCTCCATAGA 59.663 42.308 16.39 0.00 42.09 1.98
2653 3420 6.437793 CAGGAAGTAGGGTATTACCTCCATAG 59.562 46.154 16.39 6.09 42.09 2.23
2654 3421 6.320518 CAGGAAGTAGGGTATTACCTCCATA 58.679 44.000 16.39 3.42 42.09 2.74
2655 3422 5.155905 CAGGAAGTAGGGTATTACCTCCAT 58.844 45.833 16.39 4.17 42.09 3.41
2656 3423 4.553678 CAGGAAGTAGGGTATTACCTCCA 58.446 47.826 16.39 0.80 42.09 3.86
2657 3424 3.324268 GCAGGAAGTAGGGTATTACCTCC 59.676 52.174 12.54 10.66 42.09 4.30
2658 3425 4.224762 AGCAGGAAGTAGGGTATTACCTC 58.775 47.826 12.54 2.11 42.09 3.85
2659 3426 4.282292 AGCAGGAAGTAGGGTATTACCT 57.718 45.455 12.54 2.07 44.75 3.08
2660 3427 4.407945 TCAAGCAGGAAGTAGGGTATTACC 59.592 45.833 4.11 4.11 37.60 2.85
2661 3428 5.609533 TCAAGCAGGAAGTAGGGTATTAC 57.390 43.478 0.00 0.00 0.00 1.89
2662 3429 6.385759 TCAATCAAGCAGGAAGTAGGGTATTA 59.614 38.462 0.00 0.00 0.00 0.98
2663 3430 5.191722 TCAATCAAGCAGGAAGTAGGGTATT 59.808 40.000 0.00 0.00 0.00 1.89
2664 3431 4.721776 TCAATCAAGCAGGAAGTAGGGTAT 59.278 41.667 0.00 0.00 0.00 2.73
2665 3432 4.101114 TCAATCAAGCAGGAAGTAGGGTA 58.899 43.478 0.00 0.00 0.00 3.69
2666 3433 2.912956 TCAATCAAGCAGGAAGTAGGGT 59.087 45.455 0.00 0.00 0.00 4.34
2667 3434 3.634397 TCAATCAAGCAGGAAGTAGGG 57.366 47.619 0.00 0.00 0.00 3.53
2668 3435 5.033589 AGATCAATCAAGCAGGAAGTAGG 57.966 43.478 0.00 0.00 0.00 3.18
2669 3436 6.111382 TCAAGATCAATCAAGCAGGAAGTAG 58.889 40.000 0.00 0.00 0.00 2.57
2670 3437 6.053632 TCAAGATCAATCAAGCAGGAAGTA 57.946 37.500 0.00 0.00 0.00 2.24
2671 3438 4.914983 TCAAGATCAATCAAGCAGGAAGT 58.085 39.130 0.00 0.00 0.00 3.01
2672 3439 5.589050 TCATCAAGATCAATCAAGCAGGAAG 59.411 40.000 0.00 0.00 0.00 3.46
2673 3440 5.503002 TCATCAAGATCAATCAAGCAGGAA 58.497 37.500 0.00 0.00 0.00 3.36
2674 3441 5.106876 TCATCAAGATCAATCAAGCAGGA 57.893 39.130 0.00 0.00 0.00 3.86
2675 3442 5.830000 TTCATCAAGATCAATCAAGCAGG 57.170 39.130 0.00 0.00 0.00 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.