Multiple sequence alignment - TraesCS5D01G079000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G079000 chr5D 100.000 3184 0 0 1 3184 79740533 79743716 0.000000e+00 5880.0
1 TraesCS5D01G079000 chr5D 95.012 802 22 3 1 800 79719558 79720343 0.000000e+00 1243.0
2 TraesCS5D01G079000 chr2A 94.575 2212 88 10 816 3007 514663755 514665954 0.000000e+00 3391.0
3 TraesCS5D01G079000 chr2A 90.311 1414 88 9 816 2205 534605407 534604019 0.000000e+00 1807.0
4 TraesCS5D01G079000 chr2A 92.850 951 55 3 884 1834 489635756 489634819 0.000000e+00 1367.0
5 TraesCS5D01G079000 chr2A 94.007 801 30 3 2 800 274520032 274519248 0.000000e+00 1197.0
6 TraesCS5D01G079000 chr2A 93.142 802 37 4 1 800 274512172 274511387 0.000000e+00 1160.0
7 TraesCS5D01G079000 chr2A 93.636 770 46 3 876 1643 196080473 196079705 0.000000e+00 1147.0
8 TraesCS5D01G079000 chr2A 94.000 300 7 5 2892 3184 196079437 196079142 8.100000e-121 444.0
9 TraesCS5D01G079000 chr2A 91.586 309 8 6 2894 3184 534604013 534603705 8.220000e-111 411.0
10 TraesCS5D01G079000 chr2A 89.796 245 6 4 1979 2204 196079686 196079442 2.400000e-76 296.0
11 TraesCS5D01G079000 chr2A 94.798 173 9 0 1860 2032 489634821 489634649 1.460000e-68 270.0
12 TraesCS5D01G079000 chr7A 93.866 1614 75 8 965 2557 688771595 688769985 0.000000e+00 2410.0
13 TraesCS5D01G079000 chr7A 86.971 307 8 8 2892 3184 581690039 581689751 1.840000e-82 316.0
14 TraesCS5D01G079000 chr2D 93.546 1410 61 7 818 2205 651123750 651122349 0.000000e+00 2073.0
15 TraesCS5D01G079000 chr2D 92.771 1411 68 9 816 2204 430734131 430735529 0.000000e+00 2010.0
16 TraesCS5D01G079000 chr2D 96.689 453 13 2 350 800 145274313 145273861 0.000000e+00 752.0
17 TraesCS5D01G079000 chr2D 94.352 301 9 5 2892 3184 430735534 430735834 3.740000e-124 455.0
18 TraesCS5D01G079000 chr2D 93.248 311 3 6 2892 3184 651122345 651122035 2.910000e-120 442.0
19 TraesCS5D01G079000 chr1D 89.231 1365 115 8 872 2205 381612982 381614345 0.000000e+00 1677.0
20 TraesCS5D01G079000 chr1D 94.524 347 17 2 1 347 245071699 245071355 4.670000e-148 534.0
21 TraesCS5D01G079000 chr4D 87.689 1389 113 13 872 2205 451880332 451881717 0.000000e+00 1565.0
22 TraesCS5D01G079000 chr6A 93.023 1075 53 5 816 1889 257020511 257019458 0.000000e+00 1550.0
23 TraesCS5D01G079000 chr6A 95.042 827 34 4 2268 3092 257019462 257018641 0.000000e+00 1293.0
24 TraesCS5D01G079000 chr6A 95.948 691 24 4 2206 2892 280597072 280597762 0.000000e+00 1118.0
25 TraesCS5D01G079000 chr2B 84.903 1338 150 10 907 2205 126755457 126756781 0.000000e+00 1304.0
26 TraesCS5D01G079000 chr2B 90.714 140 11 1 2892 3031 126756785 126756922 5.420000e-43 185.0
27 TraesCS5D01G079000 chr3A 94.888 802 33 3 1 800 316501519 316500724 0.000000e+00 1247.0
28 TraesCS5D01G079000 chr3A 94.264 802 29 4 1 800 339757044 339756258 0.000000e+00 1210.0
29 TraesCS5D01G079000 chr3A 93.017 802 38 3 1 800 339749135 339748350 0.000000e+00 1155.0
30 TraesCS5D01G079000 chr3A 94.385 374 16 5 1 370 316493597 316493225 1.280000e-158 569.0
31 TraesCS5D01G079000 chr5A 93.142 802 31 6 1 800 87615300 87614521 0.000000e+00 1155.0
32 TraesCS5D01G079000 chr5A 92.893 802 35 4 1 800 87623195 87622414 0.000000e+00 1146.0
33 TraesCS5D01G079000 chr5A 88.704 301 6 9 2892 3184 560417050 560417330 3.040000e-90 342.0
34 TraesCS5D01G079000 chr4A 93.645 771 46 3 874 1643 586021041 586020273 0.000000e+00 1149.0
35 TraesCS5D01G079000 chr4A 90.924 617 30 12 188 801 419511770 419511177 0.000000e+00 806.0
36 TraesCS5D01G079000 chr4A 95.333 300 7 3 2892 3184 586020005 586019706 1.340000e-128 470.0
37 TraesCS5D01G079000 chr4A 89.796 245 6 4 1979 2204 586020254 586020010 2.400000e-76 296.0
38 TraesCS5D01G079000 chr6D 96.512 688 23 1 2206 2892 214542377 214543064 0.000000e+00 1136.0
39 TraesCS5D01G079000 chr6D 84.691 712 97 10 58 765 233464304 233465007 0.000000e+00 701.0
40 TraesCS5D01G079000 chr6B 96.076 688 26 1 2206 2892 390635664 390634977 0.000000e+00 1120.0
41 TraesCS5D01G079000 chr6B 92.996 671 28 4 1554 2205 665317127 665317797 0.000000e+00 961.0
42 TraesCS5D01G079000 chr6B 91.285 677 49 4 818 1494 665316462 665317128 0.000000e+00 915.0
43 TraesCS5D01G079000 chrUn 88.714 381 24 9 1844 2205 37758600 37758220 6.270000e-122 448.0
44 TraesCS5D01G079000 chrUn 88.714 381 24 9 1844 2205 322369457 322369837 6.270000e-122 448.0
45 TraesCS5D01G079000 chrUn 92.000 175 6 5 3018 3184 37758201 37758027 4.100000e-59 239.0
46 TraesCS5D01G079000 chrUn 91.573 178 7 5 3015 3184 322369853 322370030 4.100000e-59 239.0
47 TraesCS5D01G079000 chr1A 85.473 296 18 14 2892 3176 168047537 168047256 5.200000e-73 285.0
48 TraesCS5D01G079000 chr3D 100.000 39 0 0 816 854 578665454 578665492 4.410000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G079000 chr5D 79740533 79743716 3183 False 5880.000000 5880 100.000000 1 3184 1 chr5D.!!$F2 3183
1 TraesCS5D01G079000 chr5D 79719558 79720343 785 False 1243.000000 1243 95.012000 1 800 1 chr5D.!!$F1 799
2 TraesCS5D01G079000 chr2A 514663755 514665954 2199 False 3391.000000 3391 94.575000 816 3007 1 chr2A.!!$F1 2191
3 TraesCS5D01G079000 chr2A 274519248 274520032 784 True 1197.000000 1197 94.007000 2 800 1 chr2A.!!$R2 798
4 TraesCS5D01G079000 chr2A 274511387 274512172 785 True 1160.000000 1160 93.142000 1 800 1 chr2A.!!$R1 799
5 TraesCS5D01G079000 chr2A 534603705 534605407 1702 True 1109.000000 1807 90.948500 816 3184 2 chr2A.!!$R5 2368
6 TraesCS5D01G079000 chr2A 489634649 489635756 1107 True 818.500000 1367 93.824000 884 2032 2 chr2A.!!$R4 1148
7 TraesCS5D01G079000 chr2A 196079142 196080473 1331 True 629.000000 1147 92.477333 876 3184 3 chr2A.!!$R3 2308
8 TraesCS5D01G079000 chr7A 688769985 688771595 1610 True 2410.000000 2410 93.866000 965 2557 1 chr7A.!!$R2 1592
9 TraesCS5D01G079000 chr2D 651122035 651123750 1715 True 1257.500000 2073 93.397000 818 3184 2 chr2D.!!$R2 2366
10 TraesCS5D01G079000 chr2D 430734131 430735834 1703 False 1232.500000 2010 93.561500 816 3184 2 chr2D.!!$F1 2368
11 TraesCS5D01G079000 chr1D 381612982 381614345 1363 False 1677.000000 1677 89.231000 872 2205 1 chr1D.!!$F1 1333
12 TraesCS5D01G079000 chr4D 451880332 451881717 1385 False 1565.000000 1565 87.689000 872 2205 1 chr4D.!!$F1 1333
13 TraesCS5D01G079000 chr6A 257018641 257020511 1870 True 1421.500000 1550 94.032500 816 3092 2 chr6A.!!$R1 2276
14 TraesCS5D01G079000 chr6A 280597072 280597762 690 False 1118.000000 1118 95.948000 2206 2892 1 chr6A.!!$F1 686
15 TraesCS5D01G079000 chr2B 126755457 126756922 1465 False 744.500000 1304 87.808500 907 3031 2 chr2B.!!$F1 2124
16 TraesCS5D01G079000 chr3A 316500724 316501519 795 True 1247.000000 1247 94.888000 1 800 1 chr3A.!!$R2 799
17 TraesCS5D01G079000 chr3A 339756258 339757044 786 True 1210.000000 1210 94.264000 1 800 1 chr3A.!!$R4 799
18 TraesCS5D01G079000 chr3A 339748350 339749135 785 True 1155.000000 1155 93.017000 1 800 1 chr3A.!!$R3 799
19 TraesCS5D01G079000 chr5A 87614521 87615300 779 True 1155.000000 1155 93.142000 1 800 1 chr5A.!!$R1 799
20 TraesCS5D01G079000 chr5A 87622414 87623195 781 True 1146.000000 1146 92.893000 1 800 1 chr5A.!!$R2 799
21 TraesCS5D01G079000 chr4A 419511177 419511770 593 True 806.000000 806 90.924000 188 801 1 chr4A.!!$R1 613
22 TraesCS5D01G079000 chr4A 586019706 586021041 1335 True 638.333333 1149 92.924667 874 3184 3 chr4A.!!$R2 2310
23 TraesCS5D01G079000 chr6D 214542377 214543064 687 False 1136.000000 1136 96.512000 2206 2892 1 chr6D.!!$F1 686
24 TraesCS5D01G079000 chr6D 233464304 233465007 703 False 701.000000 701 84.691000 58 765 1 chr6D.!!$F2 707
25 TraesCS5D01G079000 chr6B 390634977 390635664 687 True 1120.000000 1120 96.076000 2206 2892 1 chr6B.!!$R1 686
26 TraesCS5D01G079000 chr6B 665316462 665317797 1335 False 938.000000 961 92.140500 818 2205 2 chr6B.!!$F1 1387
27 TraesCS5D01G079000 chrUn 37758027 37758600 573 True 343.500000 448 90.357000 1844 3184 2 chrUn.!!$R1 1340
28 TraesCS5D01G079000 chrUn 322369457 322370030 573 False 343.500000 448 90.143500 1844 3184 2 chrUn.!!$F1 1340

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
810 813 0.035598 GCTAGGGCTAAAGCTAGGGC 59.964 60.0 1.39 0.0 41.70 5.19 F
1185 1194 1.680522 CCCAGGCAGACGAGCAGTAT 61.681 60.0 0.00 0.0 35.83 2.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1989 2082 1.188863 AATGTTCCAATGCTGGCCTC 58.811 50.000 3.32 0.0 43.17 4.70 R
2304 2465 4.634883 TGGTAAGAGAGACTAGCTAACGTG 59.365 45.833 0.00 0.0 0.00 4.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
113 114 1.309688 GGAGCAGAGGAGAGGAGGT 59.690 63.158 0.00 0.00 0.00 3.85
339 342 3.380320 GCCAGGTAAACTCTCTCTCTCTC 59.620 52.174 0.00 0.00 0.00 3.20
340 343 4.855340 CCAGGTAAACTCTCTCTCTCTCT 58.145 47.826 0.00 0.00 0.00 3.10
341 344 4.881850 CCAGGTAAACTCTCTCTCTCTCTC 59.118 50.000 0.00 0.00 0.00 3.20
342 345 5.339200 CCAGGTAAACTCTCTCTCTCTCTCT 60.339 48.000 0.00 0.00 0.00 3.10
343 346 5.817816 CAGGTAAACTCTCTCTCTCTCTCTC 59.182 48.000 0.00 0.00 0.00 3.20
344 347 5.726793 AGGTAAACTCTCTCTCTCTCTCTCT 59.273 44.000 0.00 0.00 0.00 3.10
345 348 6.049790 GGTAAACTCTCTCTCTCTCTCTCTC 58.950 48.000 0.00 0.00 0.00 3.20
346 349 6.127026 GGTAAACTCTCTCTCTCTCTCTCTCT 60.127 46.154 0.00 0.00 0.00 3.10
347 350 5.606348 AACTCTCTCTCTCTCTCTCTCTC 57.394 47.826 0.00 0.00 0.00 3.20
348 351 4.877773 ACTCTCTCTCTCTCTCTCTCTCT 58.122 47.826 0.00 0.00 0.00 3.10
349 352 4.892934 ACTCTCTCTCTCTCTCTCTCTCTC 59.107 50.000 0.00 0.00 0.00 3.20
350 353 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
351 354 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
352 355 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
353 356 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
354 357 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
355 358 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
356 359 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
357 360 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
358 361 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
359 362 5.523588 TCTCTCTCTCTCTCTCTCTCTCTT 58.476 45.833 0.00 0.00 0.00 2.85
360 363 5.596361 TCTCTCTCTCTCTCTCTCTCTCTTC 59.404 48.000 0.00 0.00 0.00 2.87
361 364 5.523588 TCTCTCTCTCTCTCTCTCTCTTCT 58.476 45.833 0.00 0.00 0.00 2.85
362 365 6.673583 TCTCTCTCTCTCTCTCTCTCTTCTA 58.326 44.000 0.00 0.00 0.00 2.10
363 366 7.301420 TCTCTCTCTCTCTCTCTCTCTTCTAT 58.699 42.308 0.00 0.00 0.00 1.98
364 367 7.786943 TCTCTCTCTCTCTCTCTCTCTTCTATT 59.213 40.741 0.00 0.00 0.00 1.73
365 368 7.957002 TCTCTCTCTCTCTCTCTCTTCTATTC 58.043 42.308 0.00 0.00 0.00 1.75
366 369 7.786943 TCTCTCTCTCTCTCTCTCTTCTATTCT 59.213 40.741 0.00 0.00 0.00 2.40
367 370 7.730084 TCTCTCTCTCTCTCTCTTCTATTCTG 58.270 42.308 0.00 0.00 0.00 3.02
368 371 7.345653 TCTCTCTCTCTCTCTCTTCTATTCTGT 59.654 40.741 0.00 0.00 0.00 3.41
369 372 7.861629 TCTCTCTCTCTCTCTTCTATTCTGTT 58.138 38.462 0.00 0.00 0.00 3.16
370 373 8.328758 TCTCTCTCTCTCTCTTCTATTCTGTTT 58.671 37.037 0.00 0.00 0.00 2.83
371 374 8.279970 TCTCTCTCTCTCTTCTATTCTGTTTG 57.720 38.462 0.00 0.00 0.00 2.93
372 375 7.888021 TCTCTCTCTCTCTTCTATTCTGTTTGT 59.112 37.037 0.00 0.00 0.00 2.83
373 376 8.415950 TCTCTCTCTCTTCTATTCTGTTTGTT 57.584 34.615 0.00 0.00 0.00 2.83
374 377 8.865090 TCTCTCTCTCTTCTATTCTGTTTGTTT 58.135 33.333 0.00 0.00 0.00 2.83
375 378 9.139174 CTCTCTCTCTTCTATTCTGTTTGTTTC 57.861 37.037 0.00 0.00 0.00 2.78
376 379 8.865090 TCTCTCTCTTCTATTCTGTTTGTTTCT 58.135 33.333 0.00 0.00 0.00 2.52
377 380 8.824159 TCTCTCTTCTATTCTGTTTGTTTCTG 57.176 34.615 0.00 0.00 0.00 3.02
378 381 8.424918 TCTCTCTTCTATTCTGTTTGTTTCTGT 58.575 33.333 0.00 0.00 0.00 3.41
379 382 8.964476 TCTCTTCTATTCTGTTTGTTTCTGTT 57.036 30.769 0.00 0.00 0.00 3.16
380 383 9.396022 TCTCTTCTATTCTGTTTGTTTCTGTTT 57.604 29.630 0.00 0.00 0.00 2.83
390 393 9.921637 TCTGTTTGTTTCTGTTTTCTATTTTGT 57.078 25.926 0.00 0.00 0.00 2.83
411 414 9.495754 TTTTGTTTGAAGTTTGTTTTGAGTTTG 57.504 25.926 0.00 0.00 0.00 2.93
412 415 7.183580 TGTTTGAAGTTTGTTTTGAGTTTGG 57.816 32.000 0.00 0.00 0.00 3.28
413 416 6.763610 TGTTTGAAGTTTGTTTTGAGTTTGGT 59.236 30.769 0.00 0.00 0.00 3.67
414 417 7.281100 TGTTTGAAGTTTGTTTTGAGTTTGGTT 59.719 29.630 0.00 0.00 0.00 3.67
415 418 7.793927 TTGAAGTTTGTTTTGAGTTTGGTTT 57.206 28.000 0.00 0.00 0.00 3.27
416 419 7.793927 TGAAGTTTGTTTTGAGTTTGGTTTT 57.206 28.000 0.00 0.00 0.00 2.43
417 420 7.856556 TGAAGTTTGTTTTGAGTTTGGTTTTC 58.143 30.769 0.00 0.00 0.00 2.29
418 421 7.495934 TGAAGTTTGTTTTGAGTTTGGTTTTCA 59.504 29.630 0.00 0.00 0.00 2.69
419 422 7.793927 AGTTTGTTTTGAGTTTGGTTTTCAA 57.206 28.000 0.00 0.00 0.00 2.69
420 423 8.214721 AGTTTGTTTTGAGTTTGGTTTTCAAA 57.785 26.923 0.00 0.00 42.50 2.69
434 437 5.705813 GTTTTCAAACCGAACCGATTTTT 57.294 34.783 0.00 0.00 31.73 1.94
435 438 6.809297 GTTTTCAAACCGAACCGATTTTTA 57.191 33.333 0.00 0.00 31.73 1.52
436 439 7.397512 GTTTTCAAACCGAACCGATTTTTAT 57.602 32.000 0.00 0.00 31.73 1.40
437 440 6.994868 TTTCAAACCGAACCGATTTTTATG 57.005 33.333 0.00 0.00 31.73 1.90
438 441 4.477780 TCAAACCGAACCGATTTTTATGC 58.522 39.130 0.00 0.00 0.00 3.14
439 442 4.216687 TCAAACCGAACCGATTTTTATGCT 59.783 37.500 0.00 0.00 0.00 3.79
440 443 4.776795 AACCGAACCGATTTTTATGCTT 57.223 36.364 0.00 0.00 0.00 3.91
441 444 4.351131 ACCGAACCGATTTTTATGCTTC 57.649 40.909 0.00 0.00 0.00 3.86
442 445 4.007659 ACCGAACCGATTTTTATGCTTCT 58.992 39.130 0.00 0.00 0.00 2.85
443 446 4.142687 ACCGAACCGATTTTTATGCTTCTG 60.143 41.667 0.00 0.00 0.00 3.02
444 447 4.094294 CCGAACCGATTTTTATGCTTCTGA 59.906 41.667 0.00 0.00 0.00 3.27
445 448 5.391523 CCGAACCGATTTTTATGCTTCTGAA 60.392 40.000 0.00 0.00 0.00 3.02
446 449 6.083630 CGAACCGATTTTTATGCTTCTGAAA 58.916 36.000 0.00 0.00 0.00 2.69
447 450 6.580791 CGAACCGATTTTTATGCTTCTGAAAA 59.419 34.615 0.00 0.00 0.00 2.29
448 451 7.273381 CGAACCGATTTTTATGCTTCTGAAAAT 59.727 33.333 0.00 0.00 35.18 1.82
449 452 8.831715 AACCGATTTTTATGCTTCTGAAAATT 57.168 26.923 0.00 0.00 33.29 1.82
450 453 9.921637 AACCGATTTTTATGCTTCTGAAAATTA 57.078 25.926 0.00 0.00 33.29 1.40
461 464 8.579850 TGCTTCTGAAAATTATTATGTGGACT 57.420 30.769 0.00 0.00 0.00 3.85
462 465 9.023962 TGCTTCTGAAAATTATTATGTGGACTT 57.976 29.630 0.00 0.00 0.00 3.01
476 479 6.681729 ATGTGGACTTAGGAAACTAGTTCA 57.318 37.500 8.95 0.00 45.45 3.18
477 480 6.097915 TGTGGACTTAGGAAACTAGTTCAG 57.902 41.667 8.95 3.28 45.45 3.02
478 481 5.836898 TGTGGACTTAGGAAACTAGTTCAGA 59.163 40.000 8.95 0.00 45.45 3.27
479 482 6.015350 TGTGGACTTAGGAAACTAGTTCAGAG 60.015 42.308 8.95 5.85 45.45 3.35
480 483 5.047235 TGGACTTAGGAAACTAGTTCAGAGC 60.047 44.000 8.95 0.00 45.45 4.09
481 484 5.408880 ACTTAGGAAACTAGTTCAGAGCC 57.591 43.478 8.95 6.02 45.45 4.70
482 485 4.838986 ACTTAGGAAACTAGTTCAGAGCCA 59.161 41.667 8.95 0.00 45.45 4.75
483 486 3.686916 AGGAAACTAGTTCAGAGCCAC 57.313 47.619 8.95 0.00 40.61 5.01
484 487 2.972713 AGGAAACTAGTTCAGAGCCACA 59.027 45.455 8.95 0.00 40.61 4.17
485 488 3.584848 AGGAAACTAGTTCAGAGCCACAT 59.415 43.478 8.95 0.00 40.61 3.21
486 489 3.686726 GGAAACTAGTTCAGAGCCACATG 59.313 47.826 8.95 0.00 38.06 3.21
487 490 2.393271 ACTAGTTCAGAGCCACATGC 57.607 50.000 0.00 0.00 41.71 4.06
488 491 1.625315 ACTAGTTCAGAGCCACATGCA 59.375 47.619 0.00 0.00 44.83 3.96
489 492 2.038952 ACTAGTTCAGAGCCACATGCAA 59.961 45.455 0.00 0.00 44.83 4.08
490 493 1.985473 AGTTCAGAGCCACATGCAAA 58.015 45.000 0.00 0.00 44.83 3.68
491 494 1.610522 AGTTCAGAGCCACATGCAAAC 59.389 47.619 0.00 0.00 44.83 2.93
492 495 1.610522 GTTCAGAGCCACATGCAAACT 59.389 47.619 0.00 0.00 44.83 2.66
493 496 1.985473 TCAGAGCCACATGCAAACTT 58.015 45.000 0.00 0.00 44.83 2.66
494 497 2.309613 TCAGAGCCACATGCAAACTTT 58.690 42.857 0.00 0.00 44.83 2.66
495 498 2.294233 TCAGAGCCACATGCAAACTTTC 59.706 45.455 0.00 0.00 44.83 2.62
496 499 2.034939 CAGAGCCACATGCAAACTTTCA 59.965 45.455 0.00 0.00 44.83 2.69
497 500 2.694628 AGAGCCACATGCAAACTTTCAA 59.305 40.909 0.00 0.00 44.83 2.69
498 501 3.132646 AGAGCCACATGCAAACTTTCAAA 59.867 39.130 0.00 0.00 44.83 2.69
499 502 3.870419 GAGCCACATGCAAACTTTCAAAA 59.130 39.130 0.00 0.00 44.83 2.44
500 503 4.453751 AGCCACATGCAAACTTTCAAAAT 58.546 34.783 0.00 0.00 44.83 1.82
501 504 4.883006 AGCCACATGCAAACTTTCAAAATT 59.117 33.333 0.00 0.00 44.83 1.82
502 505 6.054295 AGCCACATGCAAACTTTCAAAATTA 58.946 32.000 0.00 0.00 44.83 1.40
503 506 6.711645 AGCCACATGCAAACTTTCAAAATTAT 59.288 30.769 0.00 0.00 44.83 1.28
504 507 7.229106 AGCCACATGCAAACTTTCAAAATTATT 59.771 29.630 0.00 0.00 44.83 1.40
505 508 7.324135 GCCACATGCAAACTTTCAAAATTATTG 59.676 33.333 0.00 0.00 40.77 1.90
506 509 7.804129 CCACATGCAAACTTTCAAAATTATTGG 59.196 33.333 0.00 0.00 0.00 3.16
507 510 7.804129 CACATGCAAACTTTCAAAATTATTGGG 59.196 33.333 0.00 0.00 0.00 4.12
508 511 6.311055 TGCAAACTTTCAAAATTATTGGGC 57.689 33.333 0.00 0.00 0.00 5.36
509 512 6.060788 TGCAAACTTTCAAAATTATTGGGCT 58.939 32.000 0.00 0.00 0.00 5.19
510 513 6.545298 TGCAAACTTTCAAAATTATTGGGCTT 59.455 30.769 0.00 0.00 0.00 4.35
511 514 7.716998 TGCAAACTTTCAAAATTATTGGGCTTA 59.283 29.630 0.00 0.00 0.00 3.09
512 515 8.729756 GCAAACTTTCAAAATTATTGGGCTTAT 58.270 29.630 0.00 0.00 0.00 1.73
557 560 7.775053 AAACCCAATTCAAATAGCTAGTGAA 57.225 32.000 19.52 19.52 35.83 3.18
558 561 7.961326 AACCCAATTCAAATAGCTAGTGAAT 57.039 32.000 21.48 21.48 42.38 2.57
560 563 9.474313 AACCCAATTCAAATAGCTAGTGAATTA 57.526 29.630 29.64 12.33 45.59 1.40
561 564 9.474313 ACCCAATTCAAATAGCTAGTGAATTAA 57.526 29.630 29.64 12.07 45.59 1.40
577 580 6.678568 TGAATTAATTCAAAGGCCCAAGAA 57.321 33.333 25.11 0.65 43.26 2.52
578 581 7.256494 TGAATTAATTCAAAGGCCCAAGAAT 57.744 32.000 25.11 3.47 43.26 2.40
579 582 8.372877 TGAATTAATTCAAAGGCCCAAGAATA 57.627 30.769 25.11 0.00 43.26 1.75
580 583 8.820831 TGAATTAATTCAAAGGCCCAAGAATAA 58.179 29.630 25.11 9.01 43.26 1.40
581 584 9.836864 GAATTAATTCAAAGGCCCAAGAATAAT 57.163 29.630 20.89 10.34 36.80 1.28
587 590 9.617523 ATTCAAAGGCCCAAGAATAATTATTTG 57.382 29.630 11.92 7.40 0.00 2.32
588 591 8.144862 TCAAAGGCCCAAGAATAATTATTTGT 57.855 30.769 11.92 0.77 0.00 2.83
589 592 8.040132 TCAAAGGCCCAAGAATAATTATTTGTG 58.960 33.333 11.92 12.02 0.00 3.33
590 593 7.494922 AAGGCCCAAGAATAATTATTTGTGT 57.505 32.000 11.92 0.00 0.00 3.72
591 594 6.877236 AGGCCCAAGAATAATTATTTGTGTG 58.123 36.000 11.92 6.25 0.00 3.82
592 595 6.667414 AGGCCCAAGAATAATTATTTGTGTGA 59.333 34.615 11.92 0.00 0.00 3.58
593 596 7.345392 AGGCCCAAGAATAATTATTTGTGTGAT 59.655 33.333 11.92 0.00 0.00 3.06
594 597 7.986889 GGCCCAAGAATAATTATTTGTGTGATT 59.013 33.333 11.92 0.00 0.00 2.57
595 598 9.034544 GCCCAAGAATAATTATTTGTGTGATTC 57.965 33.333 11.92 0.00 0.00 2.52
611 614 9.605275 TTGTGTGATTCAAAAATATTGGTTTGA 57.395 25.926 10.07 10.07 40.93 2.69
612 615 9.258826 TGTGTGATTCAAAAATATTGGTTTGAG 57.741 29.630 12.69 0.00 42.86 3.02
613 616 9.260002 GTGTGATTCAAAAATATTGGTTTGAGT 57.740 29.630 12.69 10.99 42.86 3.41
614 617 9.829507 TGTGATTCAAAAATATTGGTTTGAGTT 57.170 25.926 12.69 7.28 42.86 3.01
624 627 9.696917 AAATATTGGTTTGAGTTTTAGCTCTTG 57.303 29.630 0.00 0.00 36.51 3.02
625 628 4.568152 TGGTTTGAGTTTTAGCTCTTGC 57.432 40.909 0.00 0.00 36.51 4.01
626 629 3.317993 TGGTTTGAGTTTTAGCTCTTGCC 59.682 43.478 0.00 0.00 40.80 4.52
627 630 3.317993 GGTTTGAGTTTTAGCTCTTGCCA 59.682 43.478 0.00 0.00 40.80 4.92
628 631 4.202111 GGTTTGAGTTTTAGCTCTTGCCAA 60.202 41.667 0.00 0.00 40.80 4.52
629 632 5.509670 GGTTTGAGTTTTAGCTCTTGCCAAT 60.510 40.000 0.00 0.00 40.80 3.16
630 633 6.294508 GGTTTGAGTTTTAGCTCTTGCCAATA 60.295 38.462 0.00 0.00 40.80 1.90
631 634 7.315890 GTTTGAGTTTTAGCTCTTGCCAATAT 58.684 34.615 0.00 0.00 40.80 1.28
632 635 7.466746 TTGAGTTTTAGCTCTTGCCAATATT 57.533 32.000 0.00 0.00 40.80 1.28
633 636 7.466746 TGAGTTTTAGCTCTTGCCAATATTT 57.533 32.000 0.00 0.00 40.80 1.40
634 637 7.895759 TGAGTTTTAGCTCTTGCCAATATTTT 58.104 30.769 0.00 0.00 40.80 1.82
635 638 8.028938 TGAGTTTTAGCTCTTGCCAATATTTTC 58.971 33.333 0.00 0.00 40.80 2.29
636 639 7.895759 AGTTTTAGCTCTTGCCAATATTTTCA 58.104 30.769 0.00 0.00 40.80 2.69
637 640 8.367156 AGTTTTAGCTCTTGCCAATATTTTCAA 58.633 29.630 0.00 0.00 40.80 2.69
638 641 8.987890 GTTTTAGCTCTTGCCAATATTTTCAAA 58.012 29.630 0.00 0.00 40.80 2.69
639 642 8.761575 TTTAGCTCTTGCCAATATTTTCAAAG 57.238 30.769 0.00 0.00 40.80 2.77
640 643 6.594788 AGCTCTTGCCAATATTTTCAAAGA 57.405 33.333 0.00 0.00 40.80 2.52
641 644 7.179076 AGCTCTTGCCAATATTTTCAAAGAT 57.821 32.000 0.00 0.00 40.80 2.40
642 645 7.618137 AGCTCTTGCCAATATTTTCAAAGATT 58.382 30.769 0.00 0.00 40.80 2.40
643 646 8.752187 AGCTCTTGCCAATATTTTCAAAGATTA 58.248 29.630 0.00 0.00 40.80 1.75
644 647 9.028185 GCTCTTGCCAATATTTTCAAAGATTAG 57.972 33.333 0.00 0.00 29.51 1.73
645 648 8.931385 TCTTGCCAATATTTTCAAAGATTAGC 57.069 30.769 3.89 3.89 35.69 3.09
646 649 8.530311 TCTTGCCAATATTTTCAAAGATTAGCA 58.470 29.630 8.16 8.16 40.53 3.49
647 650 8.706492 TTGCCAATATTTTCAAAGATTAGCAG 57.294 30.769 10.97 0.00 42.13 4.24
648 651 7.267128 TGCCAATATTTTCAAAGATTAGCAGG 58.733 34.615 8.16 0.89 38.57 4.85
649 652 7.123997 TGCCAATATTTTCAAAGATTAGCAGGA 59.876 33.333 8.16 0.00 38.57 3.86
650 653 7.981225 GCCAATATTTTCAAAGATTAGCAGGAA 59.019 33.333 5.52 0.00 35.38 3.36
651 654 9.305925 CCAATATTTTCAAAGATTAGCAGGAAC 57.694 33.333 0.00 0.00 29.51 3.62
652 655 9.859427 CAATATTTTCAAAGATTAGCAGGAACA 57.141 29.630 0.00 0.00 29.51 3.18
656 659 9.783081 ATTTTCAAAGATTAGCAGGAACATTTT 57.217 25.926 0.00 0.00 0.00 1.82
657 660 8.592105 TTTCAAAGATTAGCAGGAACATTTTG 57.408 30.769 0.00 0.00 0.00 2.44
658 661 7.288810 TCAAAGATTAGCAGGAACATTTTGT 57.711 32.000 0.00 0.00 0.00 2.83
659 662 7.725251 TCAAAGATTAGCAGGAACATTTTGTT 58.275 30.769 0.00 0.00 44.37 2.83
660 663 7.652909 TCAAAGATTAGCAGGAACATTTTGTTG 59.347 33.333 0.00 0.00 41.28 3.33
661 664 6.029346 AGATTAGCAGGAACATTTTGTTGG 57.971 37.500 0.00 0.00 41.28 3.77
662 665 4.599047 TTAGCAGGAACATTTTGTTGGG 57.401 40.909 0.00 0.00 41.28 4.12
663 666 1.070601 AGCAGGAACATTTTGTTGGGC 59.929 47.619 0.00 0.00 41.28 5.36
664 667 1.070601 GCAGGAACATTTTGTTGGGCT 59.929 47.619 0.00 0.00 41.28 5.19
665 668 2.867647 GCAGGAACATTTTGTTGGGCTC 60.868 50.000 0.00 0.00 41.28 4.70
666 669 2.364970 CAGGAACATTTTGTTGGGCTCA 59.635 45.455 0.00 0.00 41.28 4.26
667 670 3.007182 CAGGAACATTTTGTTGGGCTCAT 59.993 43.478 0.00 0.00 41.28 2.90
668 671 3.647590 AGGAACATTTTGTTGGGCTCATT 59.352 39.130 0.00 0.00 41.28 2.57
669 672 4.102996 AGGAACATTTTGTTGGGCTCATTT 59.897 37.500 0.00 0.00 41.28 2.32
670 673 4.213906 GGAACATTTTGTTGGGCTCATTTG 59.786 41.667 0.00 0.00 41.28 2.32
671 674 4.686191 ACATTTTGTTGGGCTCATTTGA 57.314 36.364 0.00 0.00 0.00 2.69
672 675 5.033589 ACATTTTGTTGGGCTCATTTGAA 57.966 34.783 0.00 0.00 0.00 2.69
673 676 5.435291 ACATTTTGTTGGGCTCATTTGAAA 58.565 33.333 0.00 0.00 0.00 2.69
674 677 5.884792 ACATTTTGTTGGGCTCATTTGAAAA 59.115 32.000 0.00 0.00 0.00 2.29
675 678 6.546772 ACATTTTGTTGGGCTCATTTGAAAAT 59.453 30.769 0.00 0.00 0.00 1.82
676 679 7.718753 ACATTTTGTTGGGCTCATTTGAAAATA 59.281 29.630 0.00 0.00 0.00 1.40
677 680 8.732531 CATTTTGTTGGGCTCATTTGAAAATAT 58.267 29.630 0.00 0.00 0.00 1.28
678 681 8.688747 TTTTGTTGGGCTCATTTGAAAATATT 57.311 26.923 0.00 0.00 0.00 1.28
679 682 8.688747 TTTGTTGGGCTCATTTGAAAATATTT 57.311 26.923 0.00 0.00 0.00 1.40
680 683 8.688747 TTGTTGGGCTCATTTGAAAATATTTT 57.311 26.923 13.24 13.24 0.00 1.82
681 684 9.784531 TTGTTGGGCTCATTTGAAAATATTTTA 57.215 25.926 13.34 0.00 0.00 1.52
682 685 9.784531 TGTTGGGCTCATTTGAAAATATTTTAA 57.215 25.926 13.34 3.53 0.00 1.52
685 688 9.956640 TGGGCTCATTTGAAAATATTTTAATGT 57.043 25.926 23.37 8.49 32.22 2.71
712 715 9.643693 TGATCATTTTTAAAAGATTTCTGAGGC 57.356 29.630 0.14 0.00 0.00 4.70
713 716 9.866798 GATCATTTTTAAAAGATTTCTGAGGCT 57.133 29.630 0.14 0.00 0.00 4.58
715 718 9.480053 TCATTTTTAAAAGATTTCTGAGGCTTG 57.520 29.630 0.14 0.00 0.00 4.01
716 719 9.480053 CATTTTTAAAAGATTTCTGAGGCTTGA 57.520 29.630 0.14 0.00 0.00 3.02
718 721 9.883142 TTTTTAAAAGATTTCTGAGGCTTGAAA 57.117 25.926 15.45 15.45 36.74 2.69
719 722 9.883142 TTTTAAAAGATTTCTGAGGCTTGAAAA 57.117 25.926 16.53 6.25 36.06 2.29
722 725 8.599055 AAAAGATTTCTGAGGCTTGAAAATTC 57.401 30.769 16.53 12.12 36.06 2.17
723 726 6.278172 AGATTTCTGAGGCTTGAAAATTCC 57.722 37.500 16.53 9.20 36.06 3.01
724 727 4.871933 TTTCTGAGGCTTGAAAATTCCC 57.128 40.909 12.17 0.00 30.41 3.97
725 728 3.814504 TCTGAGGCTTGAAAATTCCCT 57.185 42.857 0.00 0.00 0.00 4.20
726 729 3.690460 TCTGAGGCTTGAAAATTCCCTC 58.310 45.455 8.96 8.96 41.87 4.30
728 731 3.843422 TGAGGCTTGAAAATTCCCTCAA 58.157 40.909 13.77 0.11 46.51 3.02
729 732 4.419282 TGAGGCTTGAAAATTCCCTCAAT 58.581 39.130 13.77 0.00 46.51 2.57
730 733 4.840115 TGAGGCTTGAAAATTCCCTCAATT 59.160 37.500 13.77 0.00 46.51 2.32
731 734 5.047092 TGAGGCTTGAAAATTCCCTCAATTC 60.047 40.000 13.77 0.00 46.51 2.17
732 735 4.840115 AGGCTTGAAAATTCCCTCAATTCA 59.160 37.500 0.00 0.00 33.16 2.57
733 736 5.307716 AGGCTTGAAAATTCCCTCAATTCAA 59.692 36.000 0.00 0.00 37.59 2.69
734 737 6.013119 AGGCTTGAAAATTCCCTCAATTCAAT 60.013 34.615 0.00 0.00 38.77 2.57
735 738 6.656270 GGCTTGAAAATTCCCTCAATTCAATT 59.344 34.615 0.00 0.00 38.77 2.32
736 739 7.175467 GGCTTGAAAATTCCCTCAATTCAATTT 59.825 33.333 0.00 0.00 38.77 1.82
737 740 8.232513 GCTTGAAAATTCCCTCAATTCAATTTC 58.767 33.333 0.00 0.00 38.77 2.17
738 741 8.620116 TTGAAAATTCCCTCAATTCAATTTCC 57.380 30.769 0.00 0.00 35.67 3.13
739 742 7.976712 TGAAAATTCCCTCAATTCAATTTCCT 58.023 30.769 0.00 0.00 33.16 3.36
740 743 8.439172 TGAAAATTCCCTCAATTCAATTTCCTT 58.561 29.630 0.00 0.00 33.16 3.36
741 744 8.625786 AAAATTCCCTCAATTCAATTTCCTTG 57.374 30.769 0.00 0.00 33.16 3.61
742 745 7.557875 AATTCCCTCAATTCAATTTCCTTGA 57.442 32.000 0.00 0.00 42.15 3.02
756 759 9.590451 TCAATTTCCTTGAATTTTAGATGATGC 57.410 29.630 0.00 0.00 40.92 3.91
757 760 9.373603 CAATTTCCTTGAATTTTAGATGATGCA 57.626 29.630 0.00 0.00 36.97 3.96
759 762 8.936070 TTTCCTTGAATTTTAGATGATGCATG 57.064 30.769 2.46 0.00 0.00 4.06
760 763 7.046292 TCCTTGAATTTTAGATGATGCATGG 57.954 36.000 2.46 0.00 30.78 3.66
761 764 6.834969 TCCTTGAATTTTAGATGATGCATGGA 59.165 34.615 2.46 0.00 34.45 3.41
762 765 7.507956 TCCTTGAATTTTAGATGATGCATGGAT 59.492 33.333 2.46 0.00 32.83 3.41
763 766 7.598869 CCTTGAATTTTAGATGATGCATGGATG 59.401 37.037 2.46 0.00 31.00 3.51
783 786 3.770263 GCATATGCAGAGACAAGCAAA 57.230 42.857 22.84 0.00 44.88 3.68
784 787 3.692576 GCATATGCAGAGACAAGCAAAG 58.307 45.455 22.84 0.00 44.88 2.77
785 788 3.488721 GCATATGCAGAGACAAGCAAAGG 60.489 47.826 22.84 0.00 44.88 3.11
786 789 0.886563 ATGCAGAGACAAGCAAAGGC 59.113 50.000 0.00 0.00 44.88 4.35
798 801 0.741326 GCAAAGGCTAAAGCTAGGGC 59.259 55.000 1.39 0.00 41.70 5.19
799 802 1.683319 GCAAAGGCTAAAGCTAGGGCT 60.683 52.381 1.39 0.00 43.69 5.19
800 803 2.421529 GCAAAGGCTAAAGCTAGGGCTA 60.422 50.000 9.31 0.00 42.05 3.93
801 804 3.935605 GCAAAGGCTAAAGCTAGGGCTAA 60.936 47.826 9.31 0.00 42.05 3.09
802 805 5.407190 GCAAAGGCTAAAGCTAGGGCTAAA 61.407 45.833 9.31 0.00 42.05 1.85
803 806 7.168839 GCAAAGGCTAAAGCTAGGGCTAAAG 62.169 48.000 9.31 5.14 42.05 1.85
810 813 0.035598 GCTAGGGCTAAAGCTAGGGC 59.964 60.000 1.39 0.00 41.70 5.19
811 814 2.381890 GCTAGGGCTAAAGCTAGGGCT 61.382 57.143 1.39 0.00 42.36 5.19
812 815 4.507610 GCTAGGGCTAAAGCTAGGGCTG 62.508 59.091 1.39 0.00 41.22 4.85
865 868 2.815503 CACATGCCAAGTGACAAGATCA 59.184 45.455 0.00 0.00 39.30 2.92
866 869 3.253921 CACATGCCAAGTGACAAGATCAA 59.746 43.478 0.00 0.00 39.72 2.57
867 870 3.890756 ACATGCCAAGTGACAAGATCAAA 59.109 39.130 0.00 0.00 39.72 2.69
868 871 4.341806 ACATGCCAAGTGACAAGATCAAAA 59.658 37.500 0.00 0.00 39.72 2.44
869 872 4.998671 TGCCAAGTGACAAGATCAAAAA 57.001 36.364 0.00 0.00 39.72 1.94
1185 1194 1.680522 CCCAGGCAGACGAGCAGTAT 61.681 60.000 0.00 0.00 35.83 2.12
1404 1431 7.793398 TGAATTTTCAGTAATGCGGCTAGCTT 61.793 38.462 15.72 3.24 38.53 3.74
1434 1461 6.259638 AGTGCGTTTTCTGAATTTTCGTAAA 58.740 32.000 0.00 0.00 0.00 2.01
1442 1469 7.993821 TTCTGAATTTTCGTAAATGCAACAA 57.006 28.000 9.21 3.40 38.53 2.83
1575 1611 7.132694 TGCACAATTAGTTCAGTAATGTCAG 57.867 36.000 0.00 0.00 0.00 3.51
1591 1627 4.203950 TGTCAGGTTCAATTTTCGTTCG 57.796 40.909 0.00 0.00 0.00 3.95
1630 1667 9.706691 TCAACTTGAGTTTAGTTCAGGTATAAG 57.293 33.333 0.00 0.00 34.28 1.73
1645 1682 9.542462 TTCAGGTATAAGATTTTCTATTCACGG 57.458 33.333 0.00 0.00 0.00 4.94
1824 1876 8.052748 TCTAATGGCAAGTGTATTTTGGTCTAT 58.947 33.333 0.00 0.00 0.00 1.98
1953 2029 7.432869 TCCATCAAACTTTGTTTCTATGGTTG 58.567 34.615 21.11 0.00 35.29 3.77
1994 2087 1.348036 ACTGGTAGTGAAGTTGAGGCC 59.652 52.381 0.00 0.00 0.00 5.19
2304 2465 6.058183 AGTTAATGATAGACATCCTTGCCAC 58.942 40.000 0.00 0.00 38.38 5.01
2309 2470 0.108585 AGACATCCTTGCCACACGTT 59.891 50.000 0.00 0.00 0.00 3.99
2319 2480 1.201647 TGCCACACGTTAGCTAGTCTC 59.798 52.381 0.00 0.00 0.00 3.36
2339 2500 7.877003 AGTCTCTCTTACCATCATATAACACG 58.123 38.462 0.00 0.00 0.00 4.49
2461 2623 1.532604 CGCTACTCACCCAGTGTCCA 61.533 60.000 0.00 0.00 36.43 4.02
2569 2731 1.538047 TCTTGAGTGCCATTTGCTCC 58.462 50.000 0.00 0.00 42.00 4.70
2693 2855 2.185004 ACTTGCCGCTATGACAGTTT 57.815 45.000 0.00 0.00 0.00 2.66
2794 2957 6.945218 ACTCGAGTTTCTAGTTACTCTAGGA 58.055 40.000 13.58 13.08 44.45 2.94
2878 3043 6.203072 TCTTATAGGAGAACTAACTTGCCCT 58.797 40.000 0.00 0.00 34.79 5.19
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
93 94 1.457455 CTCCTCTCCTCTGCTCCCC 60.457 68.421 0.00 0.00 0.00 4.81
113 114 0.031716 CTCTCACTCTCCCCCATGGA 60.032 60.000 15.22 0.00 42.41 3.41
240 243 1.070786 GTCCTCAACCTCGTGCCAA 59.929 57.895 0.00 0.00 0.00 4.52
339 342 5.867903 AGAAGAGAGAGAGAGAGAGAGAG 57.132 47.826 0.00 0.00 0.00 3.20
340 343 7.786943 AGAATAGAAGAGAGAGAGAGAGAGAGA 59.213 40.741 0.00 0.00 0.00 3.10
341 344 7.871973 CAGAATAGAAGAGAGAGAGAGAGAGAG 59.128 44.444 0.00 0.00 0.00 3.20
342 345 7.345653 ACAGAATAGAAGAGAGAGAGAGAGAGA 59.654 40.741 0.00 0.00 0.00 3.10
343 346 7.504403 ACAGAATAGAAGAGAGAGAGAGAGAG 58.496 42.308 0.00 0.00 0.00 3.20
344 347 7.437713 ACAGAATAGAAGAGAGAGAGAGAGA 57.562 40.000 0.00 0.00 0.00 3.10
345 348 8.400947 CAAACAGAATAGAAGAGAGAGAGAGAG 58.599 40.741 0.00 0.00 0.00 3.20
346 349 7.888021 ACAAACAGAATAGAAGAGAGAGAGAGA 59.112 37.037 0.00 0.00 0.00 3.10
347 350 8.055279 ACAAACAGAATAGAAGAGAGAGAGAG 57.945 38.462 0.00 0.00 0.00 3.20
348 351 8.415950 AACAAACAGAATAGAAGAGAGAGAGA 57.584 34.615 0.00 0.00 0.00 3.10
349 352 9.139174 GAAACAAACAGAATAGAAGAGAGAGAG 57.861 37.037 0.00 0.00 0.00 3.20
350 353 8.865090 AGAAACAAACAGAATAGAAGAGAGAGA 58.135 33.333 0.00 0.00 0.00 3.10
351 354 8.924691 CAGAAACAAACAGAATAGAAGAGAGAG 58.075 37.037 0.00 0.00 0.00 3.20
352 355 8.424918 ACAGAAACAAACAGAATAGAAGAGAGA 58.575 33.333 0.00 0.00 0.00 3.10
353 356 8.600449 ACAGAAACAAACAGAATAGAAGAGAG 57.400 34.615 0.00 0.00 0.00 3.20
354 357 8.964476 AACAGAAACAAACAGAATAGAAGAGA 57.036 30.769 0.00 0.00 0.00 3.10
364 367 9.921637 ACAAAATAGAAAACAGAAACAAACAGA 57.078 25.926 0.00 0.00 0.00 3.41
385 388 9.495754 CAAACTCAAAACAAACTTCAAACAAAA 57.504 25.926 0.00 0.00 0.00 2.44
386 389 8.125448 CCAAACTCAAAACAAACTTCAAACAAA 58.875 29.630 0.00 0.00 0.00 2.83
387 390 7.281100 ACCAAACTCAAAACAAACTTCAAACAA 59.719 29.630 0.00 0.00 0.00 2.83
388 391 6.763610 ACCAAACTCAAAACAAACTTCAAACA 59.236 30.769 0.00 0.00 0.00 2.83
389 392 7.184800 ACCAAACTCAAAACAAACTTCAAAC 57.815 32.000 0.00 0.00 0.00 2.93
390 393 7.793927 AACCAAACTCAAAACAAACTTCAAA 57.206 28.000 0.00 0.00 0.00 2.69
391 394 7.793927 AAACCAAACTCAAAACAAACTTCAA 57.206 28.000 0.00 0.00 0.00 2.69
392 395 7.495934 TGAAAACCAAACTCAAAACAAACTTCA 59.504 29.630 0.00 0.00 0.00 3.02
393 396 7.856556 TGAAAACCAAACTCAAAACAAACTTC 58.143 30.769 0.00 0.00 0.00 3.01
394 397 7.793927 TGAAAACCAAACTCAAAACAAACTT 57.206 28.000 0.00 0.00 0.00 2.66
395 398 7.793927 TTGAAAACCAAACTCAAAACAAACT 57.206 28.000 0.00 0.00 0.00 2.66
412 415 5.705813 AAAAATCGGTTCGGTTTGAAAAC 57.294 34.783 0.00 0.00 39.34 2.43
413 416 6.074249 GCATAAAAATCGGTTCGGTTTGAAAA 60.074 34.615 0.00 0.00 39.34 2.29
414 417 5.402867 GCATAAAAATCGGTTCGGTTTGAAA 59.597 36.000 0.00 0.00 39.34 2.69
415 418 4.918583 GCATAAAAATCGGTTCGGTTTGAA 59.081 37.500 0.00 0.00 39.34 2.69
416 419 4.216687 AGCATAAAAATCGGTTCGGTTTGA 59.783 37.500 0.00 0.00 39.34 2.69
417 420 4.481463 AGCATAAAAATCGGTTCGGTTTG 58.519 39.130 0.00 0.00 39.34 2.93
418 421 4.776795 AGCATAAAAATCGGTTCGGTTT 57.223 36.364 0.00 0.00 42.17 3.27
419 422 4.457949 AGAAGCATAAAAATCGGTTCGGTT 59.542 37.500 0.00 0.00 40.99 4.44
420 423 4.007659 AGAAGCATAAAAATCGGTTCGGT 58.992 39.130 0.00 0.00 40.99 4.69
421 424 4.094294 TCAGAAGCATAAAAATCGGTTCGG 59.906 41.667 0.00 0.00 40.99 4.30
422 425 5.216566 TCAGAAGCATAAAAATCGGTTCG 57.783 39.130 0.00 0.00 40.99 3.95
423 426 7.867445 TTTTCAGAAGCATAAAAATCGGTTC 57.133 32.000 0.00 0.00 37.40 3.62
424 427 8.831715 AATTTTCAGAAGCATAAAAATCGGTT 57.168 26.923 0.00 0.00 31.86 4.44
435 438 9.193806 AGTCCACATAATAATTTTCAGAAGCAT 57.806 29.630 0.00 0.00 0.00 3.79
436 439 8.579850 AGTCCACATAATAATTTTCAGAAGCA 57.420 30.769 0.00 0.00 0.00 3.91
450 453 8.822805 TGAACTAGTTTCCTAAGTCCACATAAT 58.177 33.333 10.02 0.00 32.58 1.28
451 454 8.197592 TGAACTAGTTTCCTAAGTCCACATAA 57.802 34.615 10.02 0.00 32.58 1.90
452 455 7.672660 TCTGAACTAGTTTCCTAAGTCCACATA 59.327 37.037 10.02 0.00 32.58 2.29
453 456 6.497259 TCTGAACTAGTTTCCTAAGTCCACAT 59.503 38.462 10.02 0.00 32.58 3.21
454 457 5.836898 TCTGAACTAGTTTCCTAAGTCCACA 59.163 40.000 10.02 0.00 32.58 4.17
455 458 6.342338 TCTGAACTAGTTTCCTAAGTCCAC 57.658 41.667 10.02 0.00 32.58 4.02
456 459 5.047235 GCTCTGAACTAGTTTCCTAAGTCCA 60.047 44.000 10.02 0.00 32.58 4.02
457 460 5.412640 GCTCTGAACTAGTTTCCTAAGTCC 58.587 45.833 10.02 0.00 32.58 3.85
458 461 5.047235 TGGCTCTGAACTAGTTTCCTAAGTC 60.047 44.000 10.02 5.94 32.58 3.01
459 462 4.838986 TGGCTCTGAACTAGTTTCCTAAGT 59.161 41.667 10.02 0.00 32.58 2.24
460 463 5.172205 GTGGCTCTGAACTAGTTTCCTAAG 58.828 45.833 10.02 5.06 32.58 2.18
461 464 4.591498 TGTGGCTCTGAACTAGTTTCCTAA 59.409 41.667 10.02 0.00 32.58 2.69
462 465 4.157246 TGTGGCTCTGAACTAGTTTCCTA 58.843 43.478 10.02 0.00 32.58 2.94
463 466 2.972713 TGTGGCTCTGAACTAGTTTCCT 59.027 45.455 10.02 0.00 32.58 3.36
464 467 3.402628 TGTGGCTCTGAACTAGTTTCC 57.597 47.619 10.02 7.12 32.58 3.13
465 468 3.126000 GCATGTGGCTCTGAACTAGTTTC 59.874 47.826 10.02 4.01 40.25 2.78
466 469 3.077359 GCATGTGGCTCTGAACTAGTTT 58.923 45.455 10.02 0.00 40.25 2.66
467 470 2.038952 TGCATGTGGCTCTGAACTAGTT 59.961 45.455 8.13 8.13 45.15 2.24
468 471 1.625315 TGCATGTGGCTCTGAACTAGT 59.375 47.619 0.00 0.00 45.15 2.57
469 472 2.391616 TGCATGTGGCTCTGAACTAG 57.608 50.000 0.00 0.00 45.15 2.57
470 473 2.813754 GTTTGCATGTGGCTCTGAACTA 59.186 45.455 0.00 0.00 45.15 2.24
471 474 1.610522 GTTTGCATGTGGCTCTGAACT 59.389 47.619 0.00 0.00 45.15 3.01
472 475 1.610522 AGTTTGCATGTGGCTCTGAAC 59.389 47.619 0.00 0.00 45.15 3.18
473 476 1.985473 AGTTTGCATGTGGCTCTGAA 58.015 45.000 0.00 0.00 45.15 3.02
474 477 1.985473 AAGTTTGCATGTGGCTCTGA 58.015 45.000 0.00 0.00 45.15 3.27
475 478 2.034939 TGAAAGTTTGCATGTGGCTCTG 59.965 45.455 0.00 0.00 45.15 3.35
476 479 2.309613 TGAAAGTTTGCATGTGGCTCT 58.690 42.857 0.00 0.00 45.15 4.09
477 480 2.798976 TGAAAGTTTGCATGTGGCTC 57.201 45.000 0.00 0.00 45.15 4.70
478 481 3.540314 TTTGAAAGTTTGCATGTGGCT 57.460 38.095 0.00 0.00 45.15 4.75
479 482 4.816786 ATTTTGAAAGTTTGCATGTGGC 57.183 36.364 0.00 0.00 45.13 5.01
480 483 7.804129 CCAATAATTTTGAAAGTTTGCATGTGG 59.196 33.333 0.00 0.00 0.00 4.17
481 484 7.804129 CCCAATAATTTTGAAAGTTTGCATGTG 59.196 33.333 0.00 0.00 0.00 3.21
482 485 7.521910 GCCCAATAATTTTGAAAGTTTGCATGT 60.522 33.333 0.00 0.00 0.00 3.21
483 486 6.802834 GCCCAATAATTTTGAAAGTTTGCATG 59.197 34.615 0.00 0.00 0.00 4.06
484 487 6.716173 AGCCCAATAATTTTGAAAGTTTGCAT 59.284 30.769 0.00 0.00 0.00 3.96
485 488 6.060788 AGCCCAATAATTTTGAAAGTTTGCA 58.939 32.000 0.00 0.00 0.00 4.08
486 489 6.558771 AGCCCAATAATTTTGAAAGTTTGC 57.441 33.333 0.00 0.00 0.00 3.68
531 534 9.474313 TTCACTAGCTATTTGAATTGGGTTTAT 57.526 29.630 11.96 0.00 0.00 1.40
532 535 8.871629 TTCACTAGCTATTTGAATTGGGTTTA 57.128 30.769 11.96 0.00 0.00 2.01
533 536 7.775053 TTCACTAGCTATTTGAATTGGGTTT 57.225 32.000 11.96 0.00 0.00 3.27
534 537 7.961326 ATTCACTAGCTATTTGAATTGGGTT 57.039 32.000 18.58 4.03 36.74 4.11
535 538 7.961326 AATTCACTAGCTATTTGAATTGGGT 57.039 32.000 27.19 13.91 44.49 4.51
545 548 8.633561 GGCCTTTGAATTAATTCACTAGCTATT 58.366 33.333 26.69 0.00 45.63 1.73
546 549 7.231519 GGGCCTTTGAATTAATTCACTAGCTAT 59.768 37.037 26.69 0.00 45.63 2.97
547 550 6.546034 GGGCCTTTGAATTAATTCACTAGCTA 59.454 38.462 26.69 11.34 45.63 3.32
548 551 5.360999 GGGCCTTTGAATTAATTCACTAGCT 59.639 40.000 26.69 0.00 45.63 3.32
549 552 5.127031 TGGGCCTTTGAATTAATTCACTAGC 59.873 40.000 26.69 25.22 45.63 3.42
550 553 6.773976 TGGGCCTTTGAATTAATTCACTAG 57.226 37.500 26.69 23.78 45.63 2.57
551 554 6.951198 TCTTGGGCCTTTGAATTAATTCACTA 59.049 34.615 26.69 17.60 45.63 2.74
552 555 5.779771 TCTTGGGCCTTTGAATTAATTCACT 59.220 36.000 26.69 0.00 45.63 3.41
553 556 6.036577 TCTTGGGCCTTTGAATTAATTCAC 57.963 37.500 26.69 16.51 45.63 3.18
554 557 6.678568 TTCTTGGGCCTTTGAATTAATTCA 57.321 33.333 23.86 23.86 44.42 2.57
555 558 9.836864 ATTATTCTTGGGCCTTTGAATTAATTC 57.163 29.630 19.37 19.37 37.31 2.17
561 564 9.617523 CAAATAATTATTCTTGGGCCTTTGAAT 57.382 29.630 11.08 17.95 34.16 2.57
562 565 8.601546 ACAAATAATTATTCTTGGGCCTTTGAA 58.398 29.630 11.08 6.99 0.00 2.69
563 566 8.040132 CACAAATAATTATTCTTGGGCCTTTGA 58.960 33.333 11.08 0.00 0.00 2.69
564 567 7.823799 ACACAAATAATTATTCTTGGGCCTTTG 59.176 33.333 11.08 5.02 0.00 2.77
565 568 7.823799 CACACAAATAATTATTCTTGGGCCTTT 59.176 33.333 11.08 0.00 0.00 3.11
566 569 7.180051 TCACACAAATAATTATTCTTGGGCCTT 59.820 33.333 11.08 0.00 0.00 4.35
567 570 6.667414 TCACACAAATAATTATTCTTGGGCCT 59.333 34.615 11.08 0.00 0.00 5.19
568 571 6.872920 TCACACAAATAATTATTCTTGGGCC 58.127 36.000 11.08 0.00 0.00 5.80
569 572 8.947055 AATCACACAAATAATTATTCTTGGGC 57.053 30.769 11.08 0.00 0.00 5.36
585 588 9.605275 TCAAACCAATATTTTTGAATCACACAA 57.395 25.926 11.26 0.00 38.48 3.33
586 589 9.258826 CTCAAACCAATATTTTTGAATCACACA 57.741 29.630 13.61 0.00 40.36 3.72
587 590 9.260002 ACTCAAACCAATATTTTTGAATCACAC 57.740 29.630 13.61 0.00 40.36 3.82
588 591 9.829507 AACTCAAACCAATATTTTTGAATCACA 57.170 25.926 13.61 0.00 40.36 3.58
598 601 9.696917 CAAGAGCTAAAACTCAAACCAATATTT 57.303 29.630 0.00 0.00 39.26 1.40
599 602 7.814587 GCAAGAGCTAAAACTCAAACCAATATT 59.185 33.333 0.00 0.00 39.26 1.28
600 603 7.315890 GCAAGAGCTAAAACTCAAACCAATAT 58.684 34.615 0.00 0.00 39.26 1.28
601 604 6.294508 GGCAAGAGCTAAAACTCAAACCAATA 60.295 38.462 0.00 0.00 41.70 1.90
602 605 5.509670 GGCAAGAGCTAAAACTCAAACCAAT 60.510 40.000 0.00 0.00 41.70 3.16
603 606 4.202111 GGCAAGAGCTAAAACTCAAACCAA 60.202 41.667 0.00 0.00 41.70 3.67
604 607 3.317993 GGCAAGAGCTAAAACTCAAACCA 59.682 43.478 0.00 0.00 41.70 3.67
605 608 3.317993 TGGCAAGAGCTAAAACTCAAACC 59.682 43.478 0.00 0.00 41.70 3.27
606 609 4.568152 TGGCAAGAGCTAAAACTCAAAC 57.432 40.909 0.00 0.00 41.70 2.93
607 610 5.789643 ATTGGCAAGAGCTAAAACTCAAA 57.210 34.783 5.96 0.00 44.67 2.69
608 611 7.466746 AATATTGGCAAGAGCTAAAACTCAA 57.533 32.000 5.96 0.00 44.67 3.02
609 612 7.466746 AAATATTGGCAAGAGCTAAAACTCA 57.533 32.000 5.96 0.00 44.67 3.41
610 613 8.028938 TGAAAATATTGGCAAGAGCTAAAACTC 58.971 33.333 5.96 0.00 44.67 3.01
611 614 7.895759 TGAAAATATTGGCAAGAGCTAAAACT 58.104 30.769 5.96 0.00 44.67 2.66
612 615 8.532977 TTGAAAATATTGGCAAGAGCTAAAAC 57.467 30.769 5.96 0.00 44.67 2.43
613 616 9.206870 CTTTGAAAATATTGGCAAGAGCTAAAA 57.793 29.630 5.96 0.92 44.67 1.52
614 617 8.584157 TCTTTGAAAATATTGGCAAGAGCTAAA 58.416 29.630 5.96 1.12 44.67 1.85
615 618 8.121305 TCTTTGAAAATATTGGCAAGAGCTAA 57.879 30.769 5.96 0.00 45.61 3.09
616 619 7.701539 TCTTTGAAAATATTGGCAAGAGCTA 57.298 32.000 5.96 0.00 41.70 3.32
617 620 6.594788 TCTTTGAAAATATTGGCAAGAGCT 57.405 33.333 5.96 0.00 41.70 4.09
618 621 7.838771 AATCTTTGAAAATATTGGCAAGAGC 57.161 32.000 5.96 0.00 41.10 4.09
619 622 9.028185 GCTAATCTTTGAAAATATTGGCAAGAG 57.972 33.333 5.96 0.00 38.19 2.85
620 623 8.530311 TGCTAATCTTTGAAAATATTGGCAAGA 58.470 29.630 16.91 0.09 41.96 3.02
621 624 8.706492 TGCTAATCTTTGAAAATATTGGCAAG 57.294 30.769 16.91 1.89 41.96 4.01
622 625 7.765360 CCTGCTAATCTTTGAAAATATTGGCAA 59.235 33.333 18.60 0.68 43.17 4.52
623 626 7.123997 TCCTGCTAATCTTTGAAAATATTGGCA 59.876 33.333 17.67 17.67 42.34 4.92
624 627 7.491682 TCCTGCTAATCTTTGAAAATATTGGC 58.508 34.615 12.37 12.37 38.52 4.52
625 628 9.305925 GTTCCTGCTAATCTTTGAAAATATTGG 57.694 33.333 0.00 0.00 0.00 3.16
626 629 9.859427 TGTTCCTGCTAATCTTTGAAAATATTG 57.141 29.630 0.00 0.00 0.00 1.90
630 633 9.783081 AAAATGTTCCTGCTAATCTTTGAAAAT 57.217 25.926 0.00 0.00 0.00 1.82
631 634 9.044150 CAAAATGTTCCTGCTAATCTTTGAAAA 57.956 29.630 0.00 0.00 0.00 2.29
632 635 8.203485 ACAAAATGTTCCTGCTAATCTTTGAAA 58.797 29.630 0.00 0.00 0.00 2.69
633 636 7.725251 ACAAAATGTTCCTGCTAATCTTTGAA 58.275 30.769 0.00 0.00 0.00 2.69
634 637 7.288810 ACAAAATGTTCCTGCTAATCTTTGA 57.711 32.000 0.00 0.00 0.00 2.69
635 638 7.095523 CCAACAAAATGTTCCTGCTAATCTTTG 60.096 37.037 0.00 0.00 38.77 2.77
636 639 6.930722 CCAACAAAATGTTCCTGCTAATCTTT 59.069 34.615 0.00 0.00 38.77 2.52
637 640 6.458210 CCAACAAAATGTTCCTGCTAATCTT 58.542 36.000 0.00 0.00 38.77 2.40
638 641 5.047092 CCCAACAAAATGTTCCTGCTAATCT 60.047 40.000 0.00 0.00 38.77 2.40
639 642 5.170748 CCCAACAAAATGTTCCTGCTAATC 58.829 41.667 0.00 0.00 38.77 1.75
640 643 4.563374 GCCCAACAAAATGTTCCTGCTAAT 60.563 41.667 0.00 0.00 38.77 1.73
641 644 3.244044 GCCCAACAAAATGTTCCTGCTAA 60.244 43.478 0.00 0.00 38.77 3.09
642 645 2.298729 GCCCAACAAAATGTTCCTGCTA 59.701 45.455 0.00 0.00 38.77 3.49
643 646 1.070601 GCCCAACAAAATGTTCCTGCT 59.929 47.619 0.00 0.00 38.77 4.24
644 647 1.070601 AGCCCAACAAAATGTTCCTGC 59.929 47.619 0.00 0.00 38.77 4.85
645 648 2.364970 TGAGCCCAACAAAATGTTCCTG 59.635 45.455 0.00 0.00 38.77 3.86
646 649 2.676748 TGAGCCCAACAAAATGTTCCT 58.323 42.857 0.00 0.00 38.77 3.36
647 650 3.683365 ATGAGCCCAACAAAATGTTCC 57.317 42.857 0.00 0.00 38.77 3.62
648 651 5.055812 TCAAATGAGCCCAACAAAATGTTC 58.944 37.500 0.00 0.00 38.77 3.18
649 652 5.033589 TCAAATGAGCCCAACAAAATGTT 57.966 34.783 0.00 0.00 42.08 2.71
650 653 4.686191 TCAAATGAGCCCAACAAAATGT 57.314 36.364 0.00 0.00 0.00 2.71
651 654 6.374565 TTTTCAAATGAGCCCAACAAAATG 57.625 33.333 0.00 0.00 0.00 2.32
652 655 8.866970 ATATTTTCAAATGAGCCCAACAAAAT 57.133 26.923 0.00 0.00 0.00 1.82
653 656 8.688747 AATATTTTCAAATGAGCCCAACAAAA 57.311 26.923 0.00 0.00 0.00 2.44
654 657 8.688747 AAATATTTTCAAATGAGCCCAACAAA 57.311 26.923 0.00 0.00 0.00 2.83
655 658 8.688747 AAAATATTTTCAAATGAGCCCAACAA 57.311 26.923 7.64 0.00 0.00 2.83
656 659 9.784531 TTAAAATATTTTCAAATGAGCCCAACA 57.215 25.926 16.56 0.00 0.00 3.33
659 662 9.956640 ACATTAAAATATTTTCAAATGAGCCCA 57.043 25.926 27.69 5.77 33.51 5.36
686 689 9.643693 GCCTCAGAAATCTTTTAAAAATGATCA 57.356 29.630 0.00 0.00 33.30 2.92
687 690 9.866798 AGCCTCAGAAATCTTTTAAAAATGATC 57.133 29.630 1.66 0.00 33.30 2.92
689 692 9.480053 CAAGCCTCAGAAATCTTTTAAAAATGA 57.520 29.630 1.66 0.00 0.00 2.57
690 693 9.480053 TCAAGCCTCAGAAATCTTTTAAAAATG 57.520 29.630 1.66 0.00 0.00 2.32
692 695 9.883142 TTTCAAGCCTCAGAAATCTTTTAAAAA 57.117 25.926 1.66 0.00 0.00 1.94
693 696 9.883142 TTTTCAAGCCTCAGAAATCTTTTAAAA 57.117 25.926 0.00 0.00 34.10 1.52
696 699 9.696917 GAATTTTCAAGCCTCAGAAATCTTTTA 57.303 29.630 0.00 0.00 34.10 1.52
697 700 7.658982 GGAATTTTCAAGCCTCAGAAATCTTTT 59.341 33.333 0.00 0.00 34.10 2.27
698 701 7.157347 GGAATTTTCAAGCCTCAGAAATCTTT 58.843 34.615 0.00 0.00 34.10 2.52
699 702 6.295518 GGGAATTTTCAAGCCTCAGAAATCTT 60.296 38.462 0.00 0.00 34.10 2.40
700 703 5.186603 GGGAATTTTCAAGCCTCAGAAATCT 59.813 40.000 0.00 0.00 34.10 2.40
701 704 5.186603 AGGGAATTTTCAAGCCTCAGAAATC 59.813 40.000 0.00 0.00 34.10 2.17
702 705 5.089434 AGGGAATTTTCAAGCCTCAGAAAT 58.911 37.500 0.00 0.00 34.10 2.17
703 706 4.482990 AGGGAATTTTCAAGCCTCAGAAA 58.517 39.130 0.00 0.00 32.34 2.52
704 707 4.082125 GAGGGAATTTTCAAGCCTCAGAA 58.918 43.478 0.00 0.00 34.93 3.02
705 708 3.074390 TGAGGGAATTTTCAAGCCTCAGA 59.926 43.478 10.79 0.00 37.87 3.27
706 709 3.424703 TGAGGGAATTTTCAAGCCTCAG 58.575 45.455 10.79 0.00 37.87 3.35
707 710 3.524095 TGAGGGAATTTTCAAGCCTCA 57.476 42.857 10.79 10.79 39.35 3.86
708 711 5.047092 TGAATTGAGGGAATTTTCAAGCCTC 60.047 40.000 0.00 0.00 36.81 4.70
709 712 4.840115 TGAATTGAGGGAATTTTCAAGCCT 59.160 37.500 6.97 0.00 36.81 4.58
710 713 5.151297 TGAATTGAGGGAATTTTCAAGCC 57.849 39.130 6.97 0.00 36.81 4.35
711 714 7.677454 AATTGAATTGAGGGAATTTTCAAGC 57.323 32.000 5.68 3.02 39.04 4.01
712 715 8.724229 GGAAATTGAATTGAGGGAATTTTCAAG 58.276 33.333 0.00 0.00 39.04 3.02
713 716 8.439172 AGGAAATTGAATTGAGGGAATTTTCAA 58.561 29.630 0.00 2.61 39.72 2.69
714 717 7.976712 AGGAAATTGAATTGAGGGAATTTTCA 58.023 30.769 0.00 0.00 34.18 2.69
715 718 8.724229 CAAGGAAATTGAATTGAGGGAATTTTC 58.276 33.333 0.00 0.00 41.83 2.29
716 719 8.439172 TCAAGGAAATTGAATTGAGGGAATTTT 58.561 29.630 0.00 0.00 45.00 1.82
717 720 7.976712 TCAAGGAAATTGAATTGAGGGAATTT 58.023 30.769 0.00 0.00 45.00 1.82
718 721 7.557875 TCAAGGAAATTGAATTGAGGGAATT 57.442 32.000 0.00 0.00 45.00 2.17
730 733 9.590451 GCATCATCTAAAATTCAAGGAAATTGA 57.410 29.630 0.00 0.00 46.31 2.57
731 734 9.373603 TGCATCATCTAAAATTCAAGGAAATTG 57.626 29.630 0.00 0.00 40.52 2.32
733 736 9.542462 CATGCATCATCTAAAATTCAAGGAAAT 57.458 29.630 0.00 0.00 0.00 2.17
734 737 7.982919 CCATGCATCATCTAAAATTCAAGGAAA 59.017 33.333 0.00 0.00 0.00 3.13
735 738 7.342541 TCCATGCATCATCTAAAATTCAAGGAA 59.657 33.333 0.00 0.00 0.00 3.36
736 739 6.834969 TCCATGCATCATCTAAAATTCAAGGA 59.165 34.615 0.00 0.00 0.00 3.36
737 740 7.046292 TCCATGCATCATCTAAAATTCAAGG 57.954 36.000 0.00 0.00 0.00 3.61
738 741 8.520835 CATCCATGCATCATCTAAAATTCAAG 57.479 34.615 0.00 0.00 0.00 3.02
763 766 3.488721 CCTTTGCTTGTCTCTGCATATGC 60.489 47.826 21.09 21.09 39.07 3.14
764 767 3.488721 GCCTTTGCTTGTCTCTGCATATG 60.489 47.826 0.00 0.00 39.07 1.78
765 768 2.686915 GCCTTTGCTTGTCTCTGCATAT 59.313 45.455 0.00 0.00 39.07 1.78
766 769 2.086869 GCCTTTGCTTGTCTCTGCATA 58.913 47.619 0.00 0.00 39.07 3.14
767 770 0.886563 GCCTTTGCTTGTCTCTGCAT 59.113 50.000 0.00 0.00 39.07 3.96
768 771 2.334307 GCCTTTGCTTGTCTCTGCA 58.666 52.632 0.00 0.00 37.42 4.41
776 779 5.285309 GCCCTAGCTTTAGCCTTTGCTTG 62.285 52.174 0.00 0.00 41.90 4.01
777 780 3.207832 GCCCTAGCTTTAGCCTTTGCTT 61.208 50.000 0.00 0.00 41.90 3.91
778 781 1.683319 GCCCTAGCTTTAGCCTTTGCT 60.683 52.381 0.00 0.00 43.43 3.91
779 782 0.741326 GCCCTAGCTTTAGCCTTTGC 59.259 55.000 0.00 0.00 43.38 3.68
786 789 7.763469 GCCCTAGCTTTAGCCCTAGCTTTAG 62.763 52.000 9.04 2.83 45.03 1.85
787 790 6.025989 GCCCTAGCTTTAGCCCTAGCTTTA 62.026 50.000 9.04 0.00 45.03 1.85
788 791 5.334424 GCCCTAGCTTTAGCCCTAGCTTT 62.334 52.174 9.04 0.00 45.03 3.51
789 792 3.879785 GCCCTAGCTTTAGCCCTAGCTT 61.880 54.545 9.04 0.00 45.03 3.74
791 794 0.035598 GCCCTAGCTTTAGCCCTAGC 59.964 60.000 0.00 0.00 43.38 3.42
803 806 1.227002 GTAGCGTCACAGCCCTAGC 60.227 63.158 0.00 0.00 38.01 3.42
804 807 1.334243 GTAGTAGCGTCACAGCCCTAG 59.666 57.143 0.00 0.00 38.01 3.02
805 808 1.064906 AGTAGTAGCGTCACAGCCCTA 60.065 52.381 0.00 0.00 38.01 3.53
806 809 0.323542 AGTAGTAGCGTCACAGCCCT 60.324 55.000 0.00 0.00 38.01 5.19
807 810 0.100861 GAGTAGTAGCGTCACAGCCC 59.899 60.000 0.00 0.00 38.01 5.19
808 811 0.809385 TGAGTAGTAGCGTCACAGCC 59.191 55.000 0.00 0.00 38.01 4.85
809 812 1.795889 GCTGAGTAGTAGCGTCACAGC 60.796 57.143 0.00 0.00 41.33 4.40
810 813 2.181426 GCTGAGTAGTAGCGTCACAG 57.819 55.000 0.00 0.00 0.00 3.66
892 895 0.389037 GTACGGTCGGGGTGAGTTTC 60.389 60.000 0.00 0.00 0.00 2.78
895 898 2.677875 GGTACGGTCGGGGTGAGT 60.678 66.667 0.00 0.00 0.00 3.41
976 984 3.524606 GGAGATCGCCGGAACCGA 61.525 66.667 15.07 5.08 42.83 4.69
1404 1431 1.098869 TCAGAAAACGCACTTGGCAA 58.901 45.000 0.00 0.00 45.17 4.52
1434 1461 4.470334 AAACTGAACTTGGTTGTTGCAT 57.530 36.364 0.00 0.00 0.00 3.96
1442 1469 7.933215 ACACTTAACTAAAACTGAACTTGGT 57.067 32.000 0.00 0.00 0.00 3.67
1575 1611 5.394322 CACTACAACGAACGAAAATTGAACC 59.606 40.000 0.14 0.00 0.00 3.62
1591 1627 2.872245 TCAAGTTGAGCAGCACTACAAC 59.128 45.455 0.08 10.63 41.61 3.32
1630 1667 5.909610 GCAACATAGCCGTGAATAGAAAATC 59.090 40.000 0.00 0.00 0.00 2.17
1645 1682 1.717937 CGGACTGCTGCAACATAGC 59.282 57.895 3.02 0.00 41.49 2.97
1891 1951 5.354234 ACTGCAGCATTGTAGTTGGTATTAC 59.646 40.000 15.27 0.00 46.36 1.89
1989 2082 1.188863 AATGTTCCAATGCTGGCCTC 58.811 50.000 3.32 0.00 43.17 4.70
1994 2087 5.657474 AGCTATCAAAATGTTCCAATGCTG 58.343 37.500 0.00 0.00 0.00 4.41
2107 2226 9.233649 TGAAAATATACCATAACTCGTTGGTTT 57.766 29.630 0.00 0.00 43.73 3.27
2304 2465 4.634883 TGGTAAGAGAGACTAGCTAACGTG 59.365 45.833 0.00 0.00 0.00 4.49
2319 2480 7.085116 GGACTCGTGTTATATGATGGTAAGAG 58.915 42.308 0.00 0.00 0.00 2.85
2693 2855 5.719563 TGGAGAGTATTGTCATCACCTAACA 59.280 40.000 0.00 0.00 0.00 2.41
2732 2895 8.844244 GCTGAATTGTAACATCTCATCCTAAAT 58.156 33.333 0.00 0.00 0.00 1.40
2794 2957 8.265055 TGCAGAGTATTTACTTTACCATAGCTT 58.735 33.333 0.00 0.00 36.50 3.74
2823 2988 5.726980 AATCCTGATAACAAAAGCAAGCA 57.273 34.783 0.00 0.00 0.00 3.91
3016 3181 5.356882 AGTAATAATGTGTGTGTGTGTGC 57.643 39.130 0.00 0.00 0.00 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.