Multiple sequence alignment - TraesCS5D01G078400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G078400 chr5D 100.000 4331 0 0 1 4331 78130471 78134801 0.000000e+00 7998.0
1 TraesCS5D01G078400 chr5D 93.416 243 16 0 3753 3995 78136140 78135898 1.140000e-95 361.0
2 TraesCS5D01G078400 chr5D 89.139 267 29 0 3753 4019 77453443 77453177 2.500000e-87 333.0
3 TraesCS5D01G078400 chr5A 95.936 3396 126 6 362 3752 74730531 74733919 0.000000e+00 5496.0
4 TraesCS5D01G078400 chr5B 96.944 3240 97 2 514 3752 87987839 87991077 0.000000e+00 5433.0
5 TraesCS5D01G078400 chr5B 96.530 317 8 3 4018 4331 423348004 423348320 4.960000e-144 521.0
6 TraesCS5D01G078400 chr5B 94.882 254 12 1 3743 3995 423349657 423349404 3.140000e-106 396.0
7 TraesCS5D01G078400 chr5B 94.239 243 14 0 3753 3995 423347306 423347548 5.290000e-99 372.0
8 TraesCS5D01G078400 chr5B 91.156 147 5 4 336 480 87987378 87987518 4.420000e-45 193.0
9 TraesCS5D01G078400 chr5B 96.491 57 1 1 4012 4067 423347545 423347601 4.610000e-15 93.5
10 TraesCS5D01G078400 chr6A 93.793 580 23 2 3753 4331 101569740 101570307 0.000000e+00 859.0
11 TraesCS5D01G078400 chr6A 94.239 243 14 0 3753 3995 101571653 101571411 5.290000e-99 372.0
12 TraesCS5D01G078400 chr6A 97.872 47 0 1 4022 4067 101571404 101571358 3.590000e-11 80.5
13 TraesCS5D01G078400 chr3D 88.129 278 31 2 3753 4029 574715045 574715321 3.230000e-86 329.0
14 TraesCS5D01G078400 chr2D 87.770 278 31 3 3753 4029 159703268 159702993 5.400000e-84 322.0
15 TraesCS5D01G078400 chr2D 91.775 231 18 1 3753 3983 159693488 159693717 1.940000e-83 320.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G078400 chr5D 78130471 78134801 4330 False 7998.000000 7998 100.000000 1 4331 1 chr5D.!!$F1 4330
1 TraesCS5D01G078400 chr5A 74730531 74733919 3388 False 5496.000000 5496 95.936000 362 3752 1 chr5A.!!$F1 3390
2 TraesCS5D01G078400 chr5B 87987378 87991077 3699 False 2813.000000 5433 94.050000 336 3752 2 chr5B.!!$F1 3416
3 TraesCS5D01G078400 chr5B 423347306 423348320 1014 False 328.833333 521 95.753333 3753 4331 3 chr5B.!!$F2 578
4 TraesCS5D01G078400 chr6A 101569740 101570307 567 False 859.000000 859 93.793000 3753 4331 1 chr6A.!!$F1 578

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
273 274 0.033228 GTGGCAGAGAGATCCATCGG 59.967 60.000 0.0 0.0 31.83 4.18 F
1231 1521 0.036388 GACAATGAAGAGGGACGGCA 60.036 55.000 0.0 0.0 0.00 5.69 F
1387 1677 1.144708 TGGTTGATGGACTTTGCAGGA 59.855 47.619 0.0 0.0 0.00 3.86 F
3168 3458 0.888736 TTCTTGTGTGTGGATGGGCG 60.889 55.000 0.0 0.0 0.00 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1707 1997 0.743097 GCTCTGCCCCATCAACATTC 59.257 55.000 0.00 0.0 0.00 2.67 R
2739 3029 0.804989 GGGTGCTCTTGAAATGACCG 59.195 55.000 0.00 0.0 0.00 4.79 R
3234 3524 4.181309 AGAACTAAGAGTGCCTTTCGAG 57.819 45.455 0.00 0.0 36.34 4.04 R
4072 4830 3.385755 AGCATGCACCTTTCAGAAAACTT 59.614 39.130 21.98 0.0 0.00 2.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.462426 GGAGGAGGAGATAGGGGAGA 58.538 60.000 0.00 0.00 0.00 3.71
20 21 1.790157 GGAGGAGGAGATAGGGGAGAA 59.210 57.143 0.00 0.00 0.00 2.87
21 22 2.492010 GGAGGAGGAGATAGGGGAGAAC 60.492 59.091 0.00 0.00 0.00 3.01
22 23 1.505977 AGGAGGAGATAGGGGAGAACC 59.494 57.143 0.00 0.00 39.11 3.62
23 24 1.623163 GAGGAGATAGGGGAGAACCG 58.377 60.000 0.00 0.00 41.60 4.44
24 25 1.145325 GAGGAGATAGGGGAGAACCGA 59.855 57.143 0.00 0.00 41.60 4.69
25 26 1.133419 AGGAGATAGGGGAGAACCGAC 60.133 57.143 0.00 0.00 41.60 4.79
26 27 0.953003 GAGATAGGGGAGAACCGACG 59.047 60.000 0.00 0.00 41.60 5.12
27 28 0.549950 AGATAGGGGAGAACCGACGA 59.450 55.000 0.00 0.00 41.60 4.20
28 29 0.667453 GATAGGGGAGAACCGACGAC 59.333 60.000 0.00 0.00 41.60 4.34
29 30 0.754587 ATAGGGGAGAACCGACGACC 60.755 60.000 0.00 0.00 41.60 4.79
30 31 2.141011 TAGGGGAGAACCGACGACCA 62.141 60.000 0.00 0.00 41.60 4.02
31 32 2.576832 GGGGAGAACCGACGACCAA 61.577 63.158 0.00 0.00 41.60 3.67
32 33 1.080025 GGGAGAACCGACGACCAAG 60.080 63.158 0.00 0.00 36.97 3.61
33 34 1.530013 GGGAGAACCGACGACCAAGA 61.530 60.000 0.00 0.00 36.97 3.02
34 35 0.316204 GGAGAACCGACGACCAAGAA 59.684 55.000 0.00 0.00 0.00 2.52
35 36 1.669211 GGAGAACCGACGACCAAGAAG 60.669 57.143 0.00 0.00 0.00 2.85
36 37 1.268899 GAGAACCGACGACCAAGAAGA 59.731 52.381 0.00 0.00 0.00 2.87
37 38 1.684983 AGAACCGACGACCAAGAAGAA 59.315 47.619 0.00 0.00 0.00 2.52
38 39 2.059541 GAACCGACGACCAAGAAGAAG 58.940 52.381 0.00 0.00 0.00 2.85
39 40 0.317479 ACCGACGACCAAGAAGAAGG 59.683 55.000 0.00 0.00 0.00 3.46
40 41 0.601558 CCGACGACCAAGAAGAAGGA 59.398 55.000 0.00 0.00 0.00 3.36
41 42 1.402984 CCGACGACCAAGAAGAAGGAG 60.403 57.143 0.00 0.00 0.00 3.69
42 43 1.540267 CGACGACCAAGAAGAAGGAGA 59.460 52.381 0.00 0.00 0.00 3.71
43 44 2.030185 CGACGACCAAGAAGAAGGAGAA 60.030 50.000 0.00 0.00 0.00 2.87
44 45 3.580731 GACGACCAAGAAGAAGGAGAAG 58.419 50.000 0.00 0.00 0.00 2.85
45 46 2.300437 ACGACCAAGAAGAAGGAGAAGG 59.700 50.000 0.00 0.00 0.00 3.46
46 47 2.563179 CGACCAAGAAGAAGGAGAAGGA 59.437 50.000 0.00 0.00 0.00 3.36
47 48 3.367910 CGACCAAGAAGAAGGAGAAGGAG 60.368 52.174 0.00 0.00 0.00 3.69
48 49 3.835395 GACCAAGAAGAAGGAGAAGGAGA 59.165 47.826 0.00 0.00 0.00 3.71
49 50 3.837731 ACCAAGAAGAAGGAGAAGGAGAG 59.162 47.826 0.00 0.00 0.00 3.20
50 51 3.369366 CCAAGAAGAAGGAGAAGGAGAGC 60.369 52.174 0.00 0.00 0.00 4.09
51 52 3.473113 AGAAGAAGGAGAAGGAGAGCT 57.527 47.619 0.00 0.00 0.00 4.09
52 53 3.790126 AGAAGAAGGAGAAGGAGAGCTT 58.210 45.455 0.00 0.00 0.00 3.74
53 54 3.515104 AGAAGAAGGAGAAGGAGAGCTTG 59.485 47.826 0.00 0.00 0.00 4.01
54 55 1.554617 AGAAGGAGAAGGAGAGCTTGC 59.445 52.381 0.00 0.00 0.00 4.01
55 56 1.554617 GAAGGAGAAGGAGAGCTTGCT 59.445 52.381 0.00 0.00 0.00 3.91
56 57 1.194218 AGGAGAAGGAGAGCTTGCTC 58.806 55.000 14.16 14.16 0.00 4.26
57 58 0.179113 GGAGAAGGAGAGCTTGCTCG 60.179 60.000 15.74 0.00 35.74 5.03
58 59 0.805711 GAGAAGGAGAGCTTGCTCGC 60.806 60.000 16.10 16.10 35.74 5.03
59 60 1.217779 GAAGGAGAGCTTGCTCGCT 59.782 57.895 21.68 7.00 44.33 4.93
82 83 4.459331 CGGCGGCGACACATTTGG 62.459 66.667 29.19 0.00 0.00 3.28
83 84 3.361977 GGCGGCGACACATTTGGT 61.362 61.111 12.98 0.00 0.00 3.67
93 94 2.857592 CACATTTGGTGGCTAGCATC 57.142 50.000 18.24 8.43 44.04 3.91
94 95 2.372264 CACATTTGGTGGCTAGCATCT 58.628 47.619 18.24 0.00 44.04 2.90
95 96 2.357009 CACATTTGGTGGCTAGCATCTC 59.643 50.000 18.24 0.00 44.04 2.75
96 97 2.240667 ACATTTGGTGGCTAGCATCTCT 59.759 45.455 18.24 0.00 33.73 3.10
97 98 3.285484 CATTTGGTGGCTAGCATCTCTT 58.715 45.455 18.24 0.00 33.73 2.85
98 99 4.080356 ACATTTGGTGGCTAGCATCTCTTA 60.080 41.667 18.24 0.00 33.73 2.10
99 100 3.827008 TTGGTGGCTAGCATCTCTTAG 57.173 47.619 18.24 0.00 33.73 2.18
100 101 2.752030 TGGTGGCTAGCATCTCTTAGT 58.248 47.619 18.24 0.00 0.00 2.24
101 102 2.695666 TGGTGGCTAGCATCTCTTAGTC 59.304 50.000 18.24 0.00 0.00 2.59
102 103 2.287909 GGTGGCTAGCATCTCTTAGTCG 60.288 54.545 18.24 0.00 0.00 4.18
103 104 1.338337 TGGCTAGCATCTCTTAGTCGC 59.662 52.381 18.24 0.00 0.00 5.19
104 105 1.336424 GGCTAGCATCTCTTAGTCGCC 60.336 57.143 18.24 0.00 0.00 5.54
105 106 1.664588 GCTAGCATCTCTTAGTCGCCG 60.665 57.143 10.63 0.00 0.00 6.46
106 107 0.311165 TAGCATCTCTTAGTCGCCGC 59.689 55.000 0.00 0.00 0.00 6.53
107 108 1.066587 GCATCTCTTAGTCGCCGCT 59.933 57.895 0.00 0.00 0.00 5.52
108 109 1.211818 GCATCTCTTAGTCGCCGCTG 61.212 60.000 0.00 0.00 0.00 5.18
109 110 0.101399 CATCTCTTAGTCGCCGCTGT 59.899 55.000 0.00 0.00 0.00 4.40
110 111 0.101399 ATCTCTTAGTCGCCGCTGTG 59.899 55.000 0.00 0.00 0.00 3.66
111 112 1.517257 CTCTTAGTCGCCGCTGTGG 60.517 63.158 2.05 2.05 42.50 4.17
112 113 2.509336 CTTAGTCGCCGCTGTGGG 60.509 66.667 9.65 0.00 38.63 4.61
119 120 4.329545 GCCGCTGTGGGGTTCTCA 62.330 66.667 9.65 0.00 37.97 3.27
120 121 2.046892 CCGCTGTGGGGTTCTCAG 60.047 66.667 0.00 0.00 39.32 3.35
121 122 2.583441 CCGCTGTGGGGTTCTCAGA 61.583 63.158 0.00 0.00 38.80 3.27
122 123 1.599047 CGCTGTGGGGTTCTCAGAT 59.401 57.895 0.00 0.00 38.80 2.90
123 124 0.742281 CGCTGTGGGGTTCTCAGATG 60.742 60.000 0.00 0.00 38.80 2.90
124 125 0.326264 GCTGTGGGGTTCTCAGATGT 59.674 55.000 0.00 0.00 38.80 3.06
125 126 1.271597 GCTGTGGGGTTCTCAGATGTT 60.272 52.381 0.00 0.00 38.80 2.71
126 127 2.430465 CTGTGGGGTTCTCAGATGTTG 58.570 52.381 0.00 0.00 38.80 3.33
127 128 1.168714 GTGGGGTTCTCAGATGTTGC 58.831 55.000 0.00 0.00 0.00 4.17
128 129 0.770499 TGGGGTTCTCAGATGTTGCA 59.230 50.000 0.00 0.00 0.00 4.08
129 130 1.144708 TGGGGTTCTCAGATGTTGCAA 59.855 47.619 0.00 0.00 0.00 4.08
130 131 1.541588 GGGGTTCTCAGATGTTGCAAC 59.458 52.381 22.83 22.83 0.00 4.17
131 132 2.229792 GGGTTCTCAGATGTTGCAACA 58.770 47.619 32.78 32.78 44.06 3.33
132 133 2.622942 GGGTTCTCAGATGTTGCAACAA 59.377 45.455 34.06 17.92 43.03 2.83
133 134 3.550842 GGGTTCTCAGATGTTGCAACAAC 60.551 47.826 34.06 30.35 43.03 3.32
134 135 3.291585 GTTCTCAGATGTTGCAACAACG 58.708 45.455 34.06 24.81 43.03 4.10
135 136 1.264020 TCTCAGATGTTGCAACAACGC 59.736 47.619 34.06 24.68 43.03 4.84
136 137 1.002576 CTCAGATGTTGCAACAACGCA 60.003 47.619 34.06 21.16 43.03 5.24
137 138 1.002576 TCAGATGTTGCAACAACGCAG 60.003 47.619 34.06 24.19 44.14 5.18
153 154 1.508632 GCAGTTGTTGCGGTAGAAGA 58.491 50.000 0.00 0.00 44.09 2.87
154 155 1.871039 GCAGTTGTTGCGGTAGAAGAA 59.129 47.619 0.00 0.00 44.09 2.52
155 156 2.096218 GCAGTTGTTGCGGTAGAAGAAG 60.096 50.000 0.00 0.00 44.09 2.85
156 157 3.390135 CAGTTGTTGCGGTAGAAGAAGA 58.610 45.455 0.00 0.00 0.00 2.87
157 158 3.997021 CAGTTGTTGCGGTAGAAGAAGAT 59.003 43.478 0.00 0.00 0.00 2.40
158 159 4.452455 CAGTTGTTGCGGTAGAAGAAGATT 59.548 41.667 0.00 0.00 0.00 2.40
159 160 4.452455 AGTTGTTGCGGTAGAAGAAGATTG 59.548 41.667 0.00 0.00 0.00 2.67
160 161 2.742053 TGTTGCGGTAGAAGAAGATTGC 59.258 45.455 0.00 0.00 0.00 3.56
161 162 2.742053 GTTGCGGTAGAAGAAGATTGCA 59.258 45.455 0.00 0.00 0.00 4.08
162 163 3.052455 TGCGGTAGAAGAAGATTGCAA 57.948 42.857 0.00 0.00 0.00 4.08
163 164 2.742053 TGCGGTAGAAGAAGATTGCAAC 59.258 45.455 0.00 0.00 0.00 4.17
164 165 2.742053 GCGGTAGAAGAAGATTGCAACA 59.258 45.455 0.00 0.00 0.00 3.33
165 166 3.188460 GCGGTAGAAGAAGATTGCAACAA 59.812 43.478 0.00 0.00 0.00 2.83
166 167 4.712763 CGGTAGAAGAAGATTGCAACAAC 58.287 43.478 0.00 0.00 0.00 3.32
167 168 4.213270 CGGTAGAAGAAGATTGCAACAACA 59.787 41.667 0.00 0.00 0.00 3.33
168 169 5.106555 CGGTAGAAGAAGATTGCAACAACAT 60.107 40.000 0.00 0.00 0.00 2.71
169 170 6.317857 GGTAGAAGAAGATTGCAACAACATC 58.682 40.000 0.00 0.00 0.00 3.06
170 171 5.382618 AGAAGAAGATTGCAACAACATCC 57.617 39.130 0.00 0.00 0.00 3.51
171 172 4.219288 AGAAGAAGATTGCAACAACATCCC 59.781 41.667 0.00 0.00 0.00 3.85
172 173 3.499338 AGAAGATTGCAACAACATCCCA 58.501 40.909 0.00 0.00 0.00 4.37
173 174 3.896888 AGAAGATTGCAACAACATCCCAA 59.103 39.130 0.00 0.00 0.00 4.12
174 175 4.529377 AGAAGATTGCAACAACATCCCAAT 59.471 37.500 0.00 0.00 0.00 3.16
175 176 4.895668 AGATTGCAACAACATCCCAATT 57.104 36.364 0.00 0.00 0.00 2.32
176 177 4.571919 AGATTGCAACAACATCCCAATTG 58.428 39.130 0.00 0.00 0.00 2.32
177 178 2.166821 TGCAACAACATCCCAATTGC 57.833 45.000 0.00 0.00 44.66 3.56
178 179 2.166821 GCAACAACATCCCAATTGCA 57.833 45.000 0.00 0.00 44.01 4.08
179 180 2.070783 GCAACAACATCCCAATTGCAG 58.929 47.619 0.00 0.00 44.01 4.41
180 181 2.288948 GCAACAACATCCCAATTGCAGA 60.289 45.455 0.00 0.00 44.01 4.26
181 182 3.319755 CAACAACATCCCAATTGCAGAC 58.680 45.455 0.00 0.00 0.00 3.51
182 183 1.895131 ACAACATCCCAATTGCAGACC 59.105 47.619 0.00 0.00 0.00 3.85
183 184 2.173519 CAACATCCCAATTGCAGACCT 58.826 47.619 0.00 0.00 0.00 3.85
184 185 1.843368 ACATCCCAATTGCAGACCTG 58.157 50.000 0.00 0.00 0.00 4.00
185 186 1.108776 CATCCCAATTGCAGACCTGG 58.891 55.000 0.00 0.00 0.00 4.45
186 187 4.023137 CCCAATTGCAGACCTGGG 57.977 61.111 0.00 9.33 42.60 4.45
187 188 2.353610 CCCAATTGCAGACCTGGGC 61.354 63.158 10.47 0.00 42.10 5.36
188 189 1.304713 CCAATTGCAGACCTGGGCT 60.305 57.895 0.00 0.00 0.00 5.19
189 190 0.034186 CCAATTGCAGACCTGGGCTA 60.034 55.000 0.00 0.00 0.00 3.93
190 191 1.410648 CCAATTGCAGACCTGGGCTAT 60.411 52.381 0.00 0.00 0.00 2.97
191 192 1.679680 CAATTGCAGACCTGGGCTATG 59.320 52.381 0.00 0.00 0.00 2.23
192 193 1.216064 ATTGCAGACCTGGGCTATGA 58.784 50.000 0.00 0.00 0.00 2.15
193 194 0.991146 TTGCAGACCTGGGCTATGAA 59.009 50.000 0.00 0.00 0.00 2.57
194 195 0.543277 TGCAGACCTGGGCTATGAAG 59.457 55.000 0.00 0.00 0.00 3.02
195 196 0.833287 GCAGACCTGGGCTATGAAGA 59.167 55.000 0.00 0.00 0.00 2.87
196 197 1.419387 GCAGACCTGGGCTATGAAGAT 59.581 52.381 0.00 0.00 0.00 2.40
197 198 2.549778 GCAGACCTGGGCTATGAAGATC 60.550 54.545 0.00 0.00 0.00 2.75
198 199 2.038295 CAGACCTGGGCTATGAAGATCC 59.962 54.545 0.00 0.00 0.00 3.36
199 200 1.001406 GACCTGGGCTATGAAGATCCG 59.999 57.143 0.00 0.00 0.00 4.18
200 201 1.342074 CCTGGGCTATGAAGATCCGA 58.658 55.000 0.00 0.00 0.00 4.55
201 202 1.905215 CCTGGGCTATGAAGATCCGAT 59.095 52.381 0.00 0.00 0.00 4.18
202 203 2.354503 CCTGGGCTATGAAGATCCGATG 60.355 54.545 0.00 0.00 0.00 3.84
203 204 1.625315 TGGGCTATGAAGATCCGATGG 59.375 52.381 0.00 0.00 0.00 3.51
204 205 1.625818 GGGCTATGAAGATCCGATGGT 59.374 52.381 0.00 0.00 0.00 3.55
205 206 2.354203 GGGCTATGAAGATCCGATGGTC 60.354 54.545 0.00 0.00 0.00 4.02
206 207 2.300152 GGCTATGAAGATCCGATGGTCA 59.700 50.000 0.00 0.00 0.00 4.02
207 208 3.321497 GCTATGAAGATCCGATGGTCAC 58.679 50.000 0.00 0.00 0.00 3.67
208 209 2.515926 ATGAAGATCCGATGGTCACG 57.484 50.000 0.00 0.00 0.00 4.35
209 210 1.470051 TGAAGATCCGATGGTCACGA 58.530 50.000 0.00 0.00 0.00 4.35
210 211 1.822371 TGAAGATCCGATGGTCACGAA 59.178 47.619 0.00 0.00 0.00 3.85
211 212 2.159240 TGAAGATCCGATGGTCACGAAG 60.159 50.000 0.00 0.00 0.00 3.79
212 213 0.747255 AGATCCGATGGTCACGAAGG 59.253 55.000 0.00 0.00 0.00 3.46
213 214 0.876342 GATCCGATGGTCACGAAGGC 60.876 60.000 0.00 0.00 0.00 4.35
214 215 2.629050 ATCCGATGGTCACGAAGGCG 62.629 60.000 0.00 0.00 44.79 5.52
215 216 2.180769 CGATGGTCACGAAGGCGA 59.819 61.111 0.00 0.00 41.64 5.54
216 217 1.226974 CGATGGTCACGAAGGCGAT 60.227 57.895 0.00 0.00 41.64 4.58
217 218 1.209275 CGATGGTCACGAAGGCGATC 61.209 60.000 0.00 0.00 41.64 3.69
219 220 2.582498 GGTCACGAAGGCGATCGG 60.582 66.667 18.30 1.63 46.82 4.18
220 221 3.255379 GTCACGAAGGCGATCGGC 61.255 66.667 32.17 32.17 46.82 5.54
221 222 4.847516 TCACGAAGGCGATCGGCG 62.848 66.667 32.35 22.07 46.82 6.46
236 237 4.581648 GCGCGCGCAGAAAGATCC 62.582 66.667 46.11 15.61 41.49 3.36
237 238 3.188100 CGCGCGCAGAAAGATCCA 61.188 61.111 32.61 0.00 0.00 3.41
238 239 2.528743 CGCGCGCAGAAAGATCCAT 61.529 57.895 32.61 0.00 0.00 3.41
239 240 1.278038 GCGCGCAGAAAGATCCATC 59.722 57.895 29.10 0.00 0.00 3.51
240 241 1.561730 CGCGCAGAAAGATCCATCG 59.438 57.895 8.75 0.00 0.00 3.84
241 242 1.825285 CGCGCAGAAAGATCCATCGG 61.825 60.000 8.75 0.00 0.00 4.18
242 243 0.811616 GCGCAGAAAGATCCATCGGT 60.812 55.000 0.30 0.00 0.00 4.69
243 244 1.656652 CGCAGAAAGATCCATCGGTT 58.343 50.000 0.00 0.00 0.00 4.44
244 245 2.009774 CGCAGAAAGATCCATCGGTTT 58.990 47.619 0.00 0.00 0.00 3.27
245 246 2.420022 CGCAGAAAGATCCATCGGTTTT 59.580 45.455 0.00 0.00 0.00 2.43
246 247 3.119849 CGCAGAAAGATCCATCGGTTTTT 60.120 43.478 0.00 0.00 0.00 1.94
268 269 3.340814 TTTTGAGTGGCAGAGAGATCC 57.659 47.619 0.00 0.00 0.00 3.36
269 270 1.942776 TTGAGTGGCAGAGAGATCCA 58.057 50.000 0.00 0.00 0.00 3.41
270 271 2.171568 TGAGTGGCAGAGAGATCCAT 57.828 50.000 0.00 0.00 31.83 3.41
271 272 2.037901 TGAGTGGCAGAGAGATCCATC 58.962 52.381 0.00 0.00 31.83 3.51
272 273 1.000385 GAGTGGCAGAGAGATCCATCG 60.000 57.143 0.00 0.00 31.83 3.84
273 274 0.033228 GTGGCAGAGAGATCCATCGG 59.967 60.000 0.00 0.00 31.83 4.18
274 275 1.117749 TGGCAGAGAGATCCATCGGG 61.118 60.000 0.00 0.00 0.00 5.14
275 276 1.118356 GGCAGAGAGATCCATCGGGT 61.118 60.000 0.00 0.00 34.93 5.28
276 277 0.033228 GCAGAGAGATCCATCGGGTG 59.967 60.000 0.00 0.00 34.93 4.61
277 278 1.697284 CAGAGAGATCCATCGGGTGA 58.303 55.000 0.00 0.00 34.93 4.02
278 279 2.034878 CAGAGAGATCCATCGGGTGAA 58.965 52.381 0.00 0.00 34.93 3.18
279 280 2.035632 AGAGAGATCCATCGGGTGAAC 58.964 52.381 0.00 0.00 34.93 3.18
280 281 0.747255 AGAGATCCATCGGGTGAACG 59.253 55.000 0.00 0.00 34.93 3.95
281 282 0.249489 GAGATCCATCGGGTGAACGG 60.249 60.000 0.00 0.00 34.93 4.44
282 283 0.686441 AGATCCATCGGGTGAACGGA 60.686 55.000 0.00 0.00 35.08 4.69
283 284 0.177141 GATCCATCGGGTGAACGGAA 59.823 55.000 0.00 0.00 34.49 4.30
284 285 0.178068 ATCCATCGGGTGAACGGAAG 59.822 55.000 0.00 0.00 34.49 3.46
285 286 2.106683 CCATCGGGTGAACGGAAGC 61.107 63.158 0.00 0.00 31.76 3.86
286 287 2.125673 ATCGGGTGAACGGAAGCG 60.126 61.111 0.00 0.00 31.76 4.68
287 288 2.939261 ATCGGGTGAACGGAAGCGT 61.939 57.895 0.00 0.00 31.76 5.07
288 289 2.444700 ATCGGGTGAACGGAAGCGTT 62.445 55.000 0.00 0.00 34.52 4.84
289 290 2.248835 CGGGTGAACGGAAGCGTTT 61.249 57.895 0.00 0.00 31.71 3.60
290 291 1.778027 CGGGTGAACGGAAGCGTTTT 61.778 55.000 0.00 0.00 31.71 2.43
291 292 0.040692 GGGTGAACGGAAGCGTTTTC 60.041 55.000 0.00 0.00 31.71 2.29
292 293 0.040692 GGTGAACGGAAGCGTTTTCC 60.041 55.000 9.89 9.89 35.27 3.13
293 294 0.942252 GTGAACGGAAGCGTTTTCCT 59.058 50.000 15.68 2.04 36.45 3.36
294 295 1.332686 GTGAACGGAAGCGTTTTCCTT 59.667 47.619 15.68 6.64 36.45 3.36
295 296 2.018515 TGAACGGAAGCGTTTTCCTTT 58.981 42.857 15.68 13.23 36.45 3.11
296 297 2.424246 TGAACGGAAGCGTTTTCCTTTT 59.576 40.909 15.68 10.15 36.45 2.27
297 298 3.626670 TGAACGGAAGCGTTTTCCTTTTA 59.373 39.130 15.68 8.91 36.45 1.52
298 299 3.614159 ACGGAAGCGTTTTCCTTTTAC 57.386 42.857 15.68 0.00 36.45 2.01
299 300 2.944349 ACGGAAGCGTTTTCCTTTTACA 59.056 40.909 15.68 0.00 36.45 2.41
300 301 3.377798 ACGGAAGCGTTTTCCTTTTACAA 59.622 39.130 15.68 0.00 36.45 2.41
301 302 4.142425 ACGGAAGCGTTTTCCTTTTACAAA 60.142 37.500 15.68 0.00 36.45 2.83
302 303 4.799428 CGGAAGCGTTTTCCTTTTACAAAA 59.201 37.500 15.68 0.00 36.45 2.44
303 304 5.051973 CGGAAGCGTTTTCCTTTTACAAAAG 60.052 40.000 15.68 7.35 43.82 2.27
304 305 5.276678 GGAAGCGTTTTCCTTTTACAAAAGC 60.277 40.000 12.00 0.00 43.07 3.51
305 306 4.749976 AGCGTTTTCCTTTTACAAAAGCA 58.250 34.783 8.62 0.00 43.07 3.91
306 307 4.803613 AGCGTTTTCCTTTTACAAAAGCAG 59.196 37.500 8.62 0.00 43.07 4.24
307 308 4.801516 GCGTTTTCCTTTTACAAAAGCAGA 59.198 37.500 8.62 0.41 43.07 4.26
308 309 5.051708 GCGTTTTCCTTTTACAAAAGCAGAG 60.052 40.000 8.62 0.00 43.07 3.35
309 310 6.033966 CGTTTTCCTTTTACAAAAGCAGAGT 58.966 36.000 8.62 0.00 43.07 3.24
310 311 7.190871 CGTTTTCCTTTTACAAAAGCAGAGTA 58.809 34.615 8.62 0.00 43.07 2.59
311 312 7.698970 CGTTTTCCTTTTACAAAAGCAGAGTAA 59.301 33.333 8.62 0.00 43.07 2.24
312 313 9.361315 GTTTTCCTTTTACAAAAGCAGAGTAAA 57.639 29.630 8.62 0.00 43.07 2.01
314 315 9.528018 TTTCCTTTTACAAAAGCAGAGTAAATG 57.472 29.630 8.62 0.00 43.07 2.32
315 316 7.657336 TCCTTTTACAAAAGCAGAGTAAATGG 58.343 34.615 18.94 18.94 45.19 3.16
316 317 6.366061 CCTTTTACAAAAGCAGAGTAAATGGC 59.634 38.462 15.87 0.00 41.69 4.40
317 318 3.942130 ACAAAAGCAGAGTAAATGGCC 57.058 42.857 0.00 0.00 0.00 5.36
318 319 2.562738 ACAAAAGCAGAGTAAATGGCCC 59.437 45.455 0.00 0.00 0.00 5.80
319 320 2.562298 CAAAAGCAGAGTAAATGGCCCA 59.438 45.455 0.00 0.00 0.00 5.36
320 321 2.134789 AAGCAGAGTAAATGGCCCAG 57.865 50.000 0.00 0.00 0.00 4.45
321 322 0.394899 AGCAGAGTAAATGGCCCAGC 60.395 55.000 0.00 0.00 0.00 4.85
350 351 1.202521 GGCCCAACCACAAGTTCAAAG 60.203 52.381 0.00 0.00 36.18 2.77
388 390 1.960689 CCACGAAACCCCATCAGTTTT 59.039 47.619 0.00 0.00 37.55 2.43
434 436 1.889530 CGGAGACTTCCTTTCGGCCT 61.890 60.000 0.00 0.00 41.67 5.19
435 437 1.192428 GGAGACTTCCTTTCGGCCTA 58.808 55.000 0.00 0.00 40.58 3.93
436 438 1.134759 GGAGACTTCCTTTCGGCCTAC 60.135 57.143 0.00 0.00 40.58 3.18
437 439 0.903236 AGACTTCCTTTCGGCCTACC 59.097 55.000 0.00 0.00 0.00 3.18
1072 1362 5.163405 GCTCTCATTGATGGGTACTGTAAGA 60.163 44.000 0.00 0.00 37.43 2.10
1143 1433 0.988832 GGGTGGGAGTTGATGTGGTA 59.011 55.000 0.00 0.00 0.00 3.25
1201 1491 4.790962 AGGCTGATGCTGCACGGG 62.791 66.667 3.57 0.00 39.59 5.28
1222 1512 3.603532 GACATGCTGGAGACAATGAAGA 58.396 45.455 0.00 0.00 42.06 2.87
1231 1521 0.036388 GACAATGAAGAGGGACGGCA 60.036 55.000 0.00 0.00 0.00 5.69
1368 1658 1.735920 GGTCACACTCAGCGCTCTG 60.736 63.158 7.13 5.66 41.67 3.35
1387 1677 1.144708 TGGTTGATGGACTTTGCAGGA 59.855 47.619 0.00 0.00 0.00 3.86
1407 1697 1.289066 CGGACGGTTCTCAGAAGCA 59.711 57.895 16.68 0.00 0.00 3.91
1483 1773 8.267183 TCACCTATTGTACACTGATTGATTCAT 58.733 33.333 0.00 0.00 32.72 2.57
1494 1784 3.129113 TGATTGATTCATTGTGGAAGGCG 59.871 43.478 0.00 0.00 0.00 5.52
1578 1868 8.224389 TGGATTTGGTCATGTATACATCTTTG 57.776 34.615 15.60 6.62 33.61 2.77
1625 1915 5.350504 AAGATCGATGAAGTGAAGGACAT 57.649 39.130 0.54 0.00 0.00 3.06
1631 1921 4.452114 CGATGAAGTGAAGGACATGTTTCA 59.548 41.667 8.57 8.57 33.93 2.69
1668 1958 6.306987 GGATAATCATACTCCCAATGGTGTT 58.693 40.000 0.00 0.00 39.11 3.32
1683 1973 6.698766 CCAATGGTGTTACTTATACCGTACTC 59.301 42.308 0.00 0.00 37.29 2.59
1707 1997 2.436292 GCACTCTGCAGAGCTGGG 60.436 66.667 37.78 26.13 45.79 4.45
1752 2042 7.069085 CAGATGTTGTTGGAAATGGAGGATAAT 59.931 37.037 0.00 0.00 0.00 1.28
1813 2103 7.606456 TCATCAATGGTCTTAGTAAACAAGGAC 59.394 37.037 0.00 0.00 0.00 3.85
1913 2203 7.168219 ACAGTTATTGATGGCTTCTTCAAGTA 58.832 34.615 1.86 0.00 37.76 2.24
1927 2217 3.685139 TCAAGTACCAGGAGCAAGAAG 57.315 47.619 0.00 0.00 0.00 2.85
2142 2432 3.518068 GGTAACATGCCGGCTGCC 61.518 66.667 29.70 16.68 40.16 4.85
2157 2447 1.408702 GCTGCCTTCAAAGTTGGTCAA 59.591 47.619 0.00 0.00 0.00 3.18
2446 2736 3.181437 GGGTCTTTTTGAGGTTGGGTCTA 60.181 47.826 0.00 0.00 0.00 2.59
2603 2893 1.251251 GTGAATGCTGGGCTTTCTGT 58.749 50.000 15.49 0.00 41.32 3.41
2607 2897 1.251251 ATGCTGGGCTTTCTGTTGAC 58.749 50.000 0.00 0.00 0.00 3.18
2646 2936 5.744490 ACACTTCTGCGTGTTTTATGTTAC 58.256 37.500 0.00 0.00 45.27 2.50
2704 2994 4.547671 AGAGATGTCGGGAAGAGGAATTA 58.452 43.478 0.00 0.00 0.00 1.40
2706 2996 4.290942 AGATGTCGGGAAGAGGAATTACT 58.709 43.478 0.00 0.00 0.00 2.24
2739 3029 7.013083 ACCATCACATTCAATGCTCTAATTCTC 59.987 37.037 0.00 0.00 0.00 2.87
3060 3350 3.372206 ACAATGCACTCATAAGCGACTTC 59.628 43.478 0.00 0.00 31.46 3.01
3168 3458 0.888736 TTCTTGTGTGTGGATGGGCG 60.889 55.000 0.00 0.00 0.00 6.13
3413 3703 0.604243 TGTTTGTATGACCGCGGCTT 60.604 50.000 28.58 18.01 0.00 4.35
3460 3750 4.898265 AGAAGCTACTGGCAGAGATAATCA 59.102 41.667 23.66 0.00 44.79 2.57
3478 3768 3.144657 TCACCGAGTCACCTGTAAGTA 57.855 47.619 0.00 0.00 0.00 2.24
3510 3800 7.417456 GGTTCTCTGTTTAGTTGGGTTGAATTT 60.417 37.037 0.00 0.00 0.00 1.82
3588 3881 2.240493 ACAGCTGTCTTAACACGCTT 57.760 45.000 15.25 0.00 37.61 4.68
3730 4024 1.100510 CCAGAGGCATGTGATGTTGG 58.899 55.000 0.00 0.00 0.00 3.77
3787 4081 0.109342 AGGTCCCTGAACTTGCACAG 59.891 55.000 0.00 0.00 0.00 3.66
3838 4132 6.606796 TGCAAAAGCAGATTATTTCATCCCTA 59.393 34.615 0.00 0.00 0.00 3.53
3869 4163 0.954452 GAGGTGCAAGTTTGGTCCTG 59.046 55.000 0.00 0.00 0.00 3.86
3909 4203 1.985159 AGTGGATGCCAAGTGGACTAA 59.015 47.619 0.18 0.00 34.18 2.24
3912 4206 2.375174 TGGATGCCAAGTGGACTAACTT 59.625 45.455 0.18 0.00 41.08 2.66
3920 4214 1.000955 AGTGGACTAACTTGTCAGCGG 59.999 52.381 0.00 0.00 38.61 5.52
3923 4217 0.037232 GACTAACTTGTCAGCGGGCT 60.037 55.000 0.00 0.00 36.97 5.19
3995 4297 1.037030 ACCAAGTGGCACCTGTGTTG 61.037 55.000 15.27 11.55 39.32 3.33
3996 4298 1.735360 CAAGTGGCACCTGTGTTGG 59.265 57.895 15.27 0.00 0.00 3.77
3997 4299 1.037030 CAAGTGGCACCTGTGTTGGT 61.037 55.000 15.27 0.00 41.77 3.67
3998 4300 0.548989 AAGTGGCACCTGTGTTGGTA 59.451 50.000 15.27 0.00 38.45 3.25
3999 4301 0.771127 AGTGGCACCTGTGTTGGTAT 59.229 50.000 15.27 0.00 38.45 2.73
4000 4302 1.982226 AGTGGCACCTGTGTTGGTATA 59.018 47.619 15.27 0.00 38.45 1.47
4001 4303 2.576191 AGTGGCACCTGTGTTGGTATAT 59.424 45.455 15.27 0.00 38.45 0.86
4002 4304 3.010138 AGTGGCACCTGTGTTGGTATATT 59.990 43.478 15.27 0.00 38.45 1.28
4003 4305 3.377172 GTGGCACCTGTGTTGGTATATTC 59.623 47.826 6.29 0.00 38.45 1.75
4004 4306 3.265737 TGGCACCTGTGTTGGTATATTCT 59.734 43.478 0.00 0.00 38.45 2.40
4005 4307 4.263727 TGGCACCTGTGTTGGTATATTCTT 60.264 41.667 0.00 0.00 38.45 2.52
4006 4308 4.705023 GGCACCTGTGTTGGTATATTCTTT 59.295 41.667 0.00 0.00 38.45 2.52
4007 4309 5.393027 GGCACCTGTGTTGGTATATTCTTTG 60.393 44.000 0.00 0.00 38.45 2.77
4008 4310 5.393027 GCACCTGTGTTGGTATATTCTTTGG 60.393 44.000 0.00 0.00 38.45 3.28
4009 4311 5.943416 CACCTGTGTTGGTATATTCTTTGGA 59.057 40.000 0.00 0.00 38.45 3.53
4010 4312 6.432783 CACCTGTGTTGGTATATTCTTTGGAA 59.567 38.462 0.00 0.00 38.45 3.53
4011 4313 7.122650 CACCTGTGTTGGTATATTCTTTGGAAT 59.877 37.037 0.00 0.00 40.54 3.01
4012 4314 7.122650 ACCTGTGTTGGTATATTCTTTGGAATG 59.877 37.037 2.01 0.00 39.27 2.67
4013 4315 7.122650 CCTGTGTTGGTATATTCTTTGGAATGT 59.877 37.037 2.01 0.00 41.66 2.71
4014 4316 8.415950 TGTGTTGGTATATTCTTTGGAATGTT 57.584 30.769 2.01 0.00 41.66 2.71
4067 4825 5.379706 AGCTTTCTGAAAGGTATATGCCT 57.620 39.130 27.82 6.53 46.49 4.75
4069 4827 6.900194 AGCTTTCTGAAAGGTATATGCCTAA 58.100 36.000 27.82 0.25 46.49 2.69
4072 4830 9.284968 GCTTTCTGAAAGGTATATGCCTAATTA 57.715 33.333 26.47 1.79 38.03 1.40
4150 4908 6.570654 TTAGGTCCTAACTAATTCCCTTGG 57.429 41.667 7.29 0.00 0.00 3.61
4229 4987 5.836024 TGGAACCTGTACTTAACCAAGAT 57.164 39.130 0.00 0.00 35.60 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.462426 TCTCCCCTATCTCCTCCTCC 58.538 60.000 0.00 0.00 0.00 4.30
1 2 2.492010 GGTTCTCCCCTATCTCCTCCTC 60.492 59.091 0.00 0.00 0.00 3.71
2 3 1.505977 GGTTCTCCCCTATCTCCTCCT 59.494 57.143 0.00 0.00 0.00 3.69
3 4 1.824045 CGGTTCTCCCCTATCTCCTCC 60.824 61.905 0.00 0.00 0.00 4.30
4 5 1.145325 TCGGTTCTCCCCTATCTCCTC 59.855 57.143 0.00 0.00 0.00 3.71
5 6 1.133419 GTCGGTTCTCCCCTATCTCCT 60.133 57.143 0.00 0.00 0.00 3.69
6 7 1.330234 GTCGGTTCTCCCCTATCTCC 58.670 60.000 0.00 0.00 0.00 3.71
7 8 0.953003 CGTCGGTTCTCCCCTATCTC 59.047 60.000 0.00 0.00 0.00 2.75
8 9 0.549950 TCGTCGGTTCTCCCCTATCT 59.450 55.000 0.00 0.00 0.00 1.98
9 10 0.667453 GTCGTCGGTTCTCCCCTATC 59.333 60.000 0.00 0.00 0.00 2.08
10 11 0.754587 GGTCGTCGGTTCTCCCCTAT 60.755 60.000 0.00 0.00 0.00 2.57
11 12 1.379044 GGTCGTCGGTTCTCCCCTA 60.379 63.158 0.00 0.00 0.00 3.53
12 13 2.679287 GGTCGTCGGTTCTCCCCT 60.679 66.667 0.00 0.00 0.00 4.79
13 14 2.502692 CTTGGTCGTCGGTTCTCCCC 62.503 65.000 0.00 0.00 0.00 4.81
14 15 1.080025 CTTGGTCGTCGGTTCTCCC 60.080 63.158 0.00 0.00 0.00 4.30
15 16 0.316204 TTCTTGGTCGTCGGTTCTCC 59.684 55.000 0.00 0.00 0.00 3.71
16 17 1.268899 TCTTCTTGGTCGTCGGTTCTC 59.731 52.381 0.00 0.00 0.00 2.87
17 18 1.325355 TCTTCTTGGTCGTCGGTTCT 58.675 50.000 0.00 0.00 0.00 3.01
18 19 2.059541 CTTCTTCTTGGTCGTCGGTTC 58.940 52.381 0.00 0.00 0.00 3.62
19 20 1.270147 CCTTCTTCTTGGTCGTCGGTT 60.270 52.381 0.00 0.00 0.00 4.44
20 21 0.317479 CCTTCTTCTTGGTCGTCGGT 59.683 55.000 0.00 0.00 0.00 4.69
21 22 0.601558 TCCTTCTTCTTGGTCGTCGG 59.398 55.000 0.00 0.00 0.00 4.79
22 23 1.540267 TCTCCTTCTTCTTGGTCGTCG 59.460 52.381 0.00 0.00 0.00 5.12
23 24 3.580731 CTTCTCCTTCTTCTTGGTCGTC 58.419 50.000 0.00 0.00 0.00 4.20
24 25 2.300437 CCTTCTCCTTCTTCTTGGTCGT 59.700 50.000 0.00 0.00 0.00 4.34
25 26 2.563179 TCCTTCTCCTTCTTCTTGGTCG 59.437 50.000 0.00 0.00 0.00 4.79
26 27 3.835395 TCTCCTTCTCCTTCTTCTTGGTC 59.165 47.826 0.00 0.00 0.00 4.02
27 28 3.837731 CTCTCCTTCTCCTTCTTCTTGGT 59.162 47.826 0.00 0.00 0.00 3.67
28 29 3.369366 GCTCTCCTTCTCCTTCTTCTTGG 60.369 52.174 0.00 0.00 0.00 3.61
29 30 3.515104 AGCTCTCCTTCTCCTTCTTCTTG 59.485 47.826 0.00 0.00 0.00 3.02
30 31 3.790126 AGCTCTCCTTCTCCTTCTTCTT 58.210 45.455 0.00 0.00 0.00 2.52
31 32 3.473113 AGCTCTCCTTCTCCTTCTTCT 57.527 47.619 0.00 0.00 0.00 2.85
32 33 3.860641 CAAGCTCTCCTTCTCCTTCTTC 58.139 50.000 0.00 0.00 0.00 2.87
33 34 2.027285 GCAAGCTCTCCTTCTCCTTCTT 60.027 50.000 0.00 0.00 0.00 2.52
34 35 1.554617 GCAAGCTCTCCTTCTCCTTCT 59.445 52.381 0.00 0.00 0.00 2.85
35 36 1.554617 AGCAAGCTCTCCTTCTCCTTC 59.445 52.381 0.00 0.00 0.00 3.46
36 37 1.554617 GAGCAAGCTCTCCTTCTCCTT 59.445 52.381 14.52 0.00 39.80 3.36
37 38 1.194218 GAGCAAGCTCTCCTTCTCCT 58.806 55.000 14.52 0.00 39.80 3.69
38 39 0.179113 CGAGCAAGCTCTCCTTCTCC 60.179 60.000 18.82 0.00 40.69 3.71
39 40 0.805711 GCGAGCAAGCTCTCCTTCTC 60.806 60.000 18.82 0.00 40.69 2.87
40 41 1.217779 GCGAGCAAGCTCTCCTTCT 59.782 57.895 18.82 0.00 40.69 2.85
41 42 1.217779 AGCGAGCAAGCTCTCCTTC 59.782 57.895 18.82 4.33 45.67 3.46
42 43 3.386592 AGCGAGCAAGCTCTCCTT 58.613 55.556 18.82 0.48 45.67 3.36
65 66 4.459331 CCAAATGTGTCGCCGCCG 62.459 66.667 0.00 0.00 0.00 6.46
66 67 3.361977 ACCAAATGTGTCGCCGCC 61.362 61.111 0.00 0.00 0.00 6.13
67 68 2.126888 CACCAAATGTGTCGCCGC 60.127 61.111 0.00 0.00 40.26 6.53
68 69 2.560861 CCACCAAATGTGTCGCCG 59.439 61.111 0.00 0.00 43.85 6.46
69 70 0.958382 TAGCCACCAAATGTGTCGCC 60.958 55.000 0.00 0.00 43.85 5.54
70 71 0.447801 CTAGCCACCAAATGTGTCGC 59.552 55.000 0.00 0.00 43.85 5.19
71 72 0.447801 GCTAGCCACCAAATGTGTCG 59.552 55.000 2.29 0.00 43.85 4.35
72 73 1.533625 TGCTAGCCACCAAATGTGTC 58.466 50.000 13.29 0.00 43.85 3.67
73 74 2.094675 GATGCTAGCCACCAAATGTGT 58.905 47.619 13.29 0.00 43.85 3.72
74 75 2.357009 GAGATGCTAGCCACCAAATGTG 59.643 50.000 13.29 0.00 45.01 3.21
75 76 2.240667 AGAGATGCTAGCCACCAAATGT 59.759 45.455 13.29 0.00 0.00 2.71
76 77 2.928334 AGAGATGCTAGCCACCAAATG 58.072 47.619 13.29 0.00 0.00 2.32
77 78 3.659183 AAGAGATGCTAGCCACCAAAT 57.341 42.857 13.29 0.00 0.00 2.32
78 79 3.519510 ACTAAGAGATGCTAGCCACCAAA 59.480 43.478 13.29 0.00 0.00 3.28
79 80 3.107601 ACTAAGAGATGCTAGCCACCAA 58.892 45.455 13.29 0.00 0.00 3.67
80 81 2.695666 GACTAAGAGATGCTAGCCACCA 59.304 50.000 13.29 0.00 0.00 4.17
81 82 2.287909 CGACTAAGAGATGCTAGCCACC 60.288 54.545 13.29 0.86 0.00 4.61
82 83 2.860582 GCGACTAAGAGATGCTAGCCAC 60.861 54.545 13.29 6.19 0.00 5.01
83 84 1.338337 GCGACTAAGAGATGCTAGCCA 59.662 52.381 13.29 0.24 0.00 4.75
84 85 1.336424 GGCGACTAAGAGATGCTAGCC 60.336 57.143 13.29 0.00 35.00 3.93
85 86 1.664588 CGGCGACTAAGAGATGCTAGC 60.665 57.143 8.10 8.10 0.00 3.42
86 87 1.664588 GCGGCGACTAAGAGATGCTAG 60.665 57.143 12.98 0.00 0.00 3.42
87 88 0.311165 GCGGCGACTAAGAGATGCTA 59.689 55.000 12.98 0.00 0.00 3.49
88 89 1.066587 GCGGCGACTAAGAGATGCT 59.933 57.895 12.98 0.00 0.00 3.79
89 90 1.066587 AGCGGCGACTAAGAGATGC 59.933 57.895 12.98 0.00 0.00 3.91
90 91 0.101399 ACAGCGGCGACTAAGAGATG 59.899 55.000 12.98 0.00 0.00 2.90
91 92 0.101399 CACAGCGGCGACTAAGAGAT 59.899 55.000 12.98 0.00 0.00 2.75
92 93 1.506718 CACAGCGGCGACTAAGAGA 59.493 57.895 12.98 0.00 0.00 3.10
93 94 1.517257 CCACAGCGGCGACTAAGAG 60.517 63.158 12.98 0.00 0.00 2.85
94 95 2.571757 CCACAGCGGCGACTAAGA 59.428 61.111 12.98 0.00 0.00 2.10
95 96 2.509336 CCCACAGCGGCGACTAAG 60.509 66.667 12.98 3.33 0.00 2.18
96 97 4.077184 CCCCACAGCGGCGACTAA 62.077 66.667 12.98 0.00 0.00 2.24
102 103 4.329545 TGAGAACCCCACAGCGGC 62.330 66.667 0.00 0.00 0.00 6.53
103 104 1.903877 ATCTGAGAACCCCACAGCGG 61.904 60.000 0.00 0.00 0.00 5.52
104 105 0.742281 CATCTGAGAACCCCACAGCG 60.742 60.000 0.00 0.00 0.00 5.18
105 106 0.326264 ACATCTGAGAACCCCACAGC 59.674 55.000 0.00 0.00 0.00 4.40
106 107 2.430465 CAACATCTGAGAACCCCACAG 58.570 52.381 0.00 0.00 0.00 3.66
107 108 1.545428 GCAACATCTGAGAACCCCACA 60.545 52.381 0.00 0.00 0.00 4.17
108 109 1.168714 GCAACATCTGAGAACCCCAC 58.831 55.000 0.00 0.00 0.00 4.61
109 110 0.770499 TGCAACATCTGAGAACCCCA 59.230 50.000 0.00 0.00 0.00 4.96
110 111 1.541588 GTTGCAACATCTGAGAACCCC 59.458 52.381 24.52 0.00 0.00 4.95
111 112 2.229792 TGTTGCAACATCTGAGAACCC 58.770 47.619 27.96 0.00 33.17 4.11
112 113 3.632189 GTTGTTGCAACATCTGAGAACC 58.368 45.455 31.48 8.58 38.95 3.62
113 114 3.291585 CGTTGTTGCAACATCTGAGAAC 58.708 45.455 31.48 22.36 38.95 3.01
114 115 2.286950 GCGTTGTTGCAACATCTGAGAA 60.287 45.455 31.48 13.22 38.95 2.87
115 116 1.264020 GCGTTGTTGCAACATCTGAGA 59.736 47.619 31.48 13.98 38.95 3.27
116 117 1.002576 TGCGTTGTTGCAACATCTGAG 60.003 47.619 31.48 20.40 43.02 3.35
117 118 1.002576 CTGCGTTGTTGCAACATCTGA 60.003 47.619 31.48 15.13 45.74 3.27
118 119 1.268692 ACTGCGTTGTTGCAACATCTG 60.269 47.619 31.48 24.98 45.74 2.90
119 120 1.024271 ACTGCGTTGTTGCAACATCT 58.976 45.000 31.48 12.84 45.74 2.90
120 121 1.518102 CAACTGCGTTGTTGCAACATC 59.482 47.619 31.48 27.61 45.74 3.06
121 122 1.558741 CAACTGCGTTGTTGCAACAT 58.441 45.000 31.48 13.98 45.74 2.71
122 123 3.027312 CAACTGCGTTGTTGCAACA 57.973 47.368 27.96 27.96 45.74 3.33
135 136 3.390135 TCTTCTTCTACCGCAACAACTG 58.610 45.455 0.00 0.00 0.00 3.16
136 137 3.746045 TCTTCTTCTACCGCAACAACT 57.254 42.857 0.00 0.00 0.00 3.16
137 138 4.712763 CAATCTTCTTCTACCGCAACAAC 58.287 43.478 0.00 0.00 0.00 3.32
138 139 3.188460 GCAATCTTCTTCTACCGCAACAA 59.812 43.478 0.00 0.00 0.00 2.83
139 140 2.742053 GCAATCTTCTTCTACCGCAACA 59.258 45.455 0.00 0.00 0.00 3.33
140 141 2.742053 TGCAATCTTCTTCTACCGCAAC 59.258 45.455 0.00 0.00 0.00 4.17
141 142 3.052455 TGCAATCTTCTTCTACCGCAA 57.948 42.857 0.00 0.00 0.00 4.85
142 143 2.742053 GTTGCAATCTTCTTCTACCGCA 59.258 45.455 0.59 0.00 0.00 5.69
143 144 2.742053 TGTTGCAATCTTCTTCTACCGC 59.258 45.455 0.59 0.00 0.00 5.68
144 145 4.213270 TGTTGTTGCAATCTTCTTCTACCG 59.787 41.667 0.59 0.00 0.00 4.02
145 146 5.689383 TGTTGTTGCAATCTTCTTCTACC 57.311 39.130 0.59 0.00 0.00 3.18
146 147 6.317857 GGATGTTGTTGCAATCTTCTTCTAC 58.682 40.000 0.59 0.00 0.00 2.59
147 148 5.415701 GGGATGTTGTTGCAATCTTCTTCTA 59.584 40.000 0.59 0.00 0.00 2.10
148 149 4.219288 GGGATGTTGTTGCAATCTTCTTCT 59.781 41.667 0.59 0.00 0.00 2.85
149 150 4.022068 TGGGATGTTGTTGCAATCTTCTTC 60.022 41.667 0.59 2.42 0.00 2.87
150 151 3.896888 TGGGATGTTGTTGCAATCTTCTT 59.103 39.130 0.59 0.00 0.00 2.52
151 152 3.499338 TGGGATGTTGTTGCAATCTTCT 58.501 40.909 0.59 0.00 0.00 2.85
152 153 3.940209 TGGGATGTTGTTGCAATCTTC 57.060 42.857 0.59 4.75 0.00 2.87
153 154 4.895668 ATTGGGATGTTGTTGCAATCTT 57.104 36.364 0.59 0.00 0.00 2.40
154 155 4.571919 CAATTGGGATGTTGTTGCAATCT 58.428 39.130 0.59 0.00 0.00 2.40
155 156 3.125658 GCAATTGGGATGTTGTTGCAATC 59.874 43.478 0.59 0.00 43.33 2.67
156 157 3.075884 GCAATTGGGATGTTGTTGCAAT 58.924 40.909 0.59 0.00 43.33 3.56
157 158 2.492012 GCAATTGGGATGTTGTTGCAA 58.508 42.857 7.72 0.00 43.33 4.08
158 159 2.166821 GCAATTGGGATGTTGTTGCA 57.833 45.000 7.72 0.00 43.33 4.08
159 160 2.070783 CTGCAATTGGGATGTTGTTGC 58.929 47.619 7.72 0.00 43.93 4.17
160 161 3.319755 GTCTGCAATTGGGATGTTGTTG 58.680 45.455 7.72 0.00 0.00 3.33
161 162 2.299867 GGTCTGCAATTGGGATGTTGTT 59.700 45.455 7.72 0.00 0.00 2.83
162 163 1.895131 GGTCTGCAATTGGGATGTTGT 59.105 47.619 7.72 0.00 0.00 3.32
163 164 2.094390 CAGGTCTGCAATTGGGATGTTG 60.094 50.000 7.72 0.00 0.00 3.33
164 165 2.173519 CAGGTCTGCAATTGGGATGTT 58.826 47.619 7.72 0.00 0.00 2.71
165 166 1.617804 CCAGGTCTGCAATTGGGATGT 60.618 52.381 7.72 0.00 0.00 3.06
166 167 1.108776 CCAGGTCTGCAATTGGGATG 58.891 55.000 7.72 0.00 0.00 3.51
167 168 3.602104 CCAGGTCTGCAATTGGGAT 57.398 52.632 7.72 0.00 0.00 3.85
169 170 4.023137 CCCAGGTCTGCAATTGGG 57.977 61.111 7.72 9.33 43.92 4.12
170 171 0.034186 TAGCCCAGGTCTGCAATTGG 60.034 55.000 7.72 0.00 0.00 3.16
171 172 1.679680 CATAGCCCAGGTCTGCAATTG 59.320 52.381 0.00 0.00 0.00 2.32
172 173 1.565759 TCATAGCCCAGGTCTGCAATT 59.434 47.619 0.00 0.00 0.00 2.32
173 174 1.216064 TCATAGCCCAGGTCTGCAAT 58.784 50.000 0.00 0.00 0.00 3.56
174 175 0.991146 TTCATAGCCCAGGTCTGCAA 59.009 50.000 0.00 0.00 0.00 4.08
175 176 0.543277 CTTCATAGCCCAGGTCTGCA 59.457 55.000 0.00 0.00 0.00 4.41
176 177 0.833287 TCTTCATAGCCCAGGTCTGC 59.167 55.000 0.00 0.00 0.00 4.26
177 178 2.038295 GGATCTTCATAGCCCAGGTCTG 59.962 54.545 0.00 0.00 0.00 3.51
178 179 2.334023 GGATCTTCATAGCCCAGGTCT 58.666 52.381 0.00 0.00 0.00 3.85
179 180 1.001406 CGGATCTTCATAGCCCAGGTC 59.999 57.143 0.00 0.00 0.00 3.85
180 181 1.051812 CGGATCTTCATAGCCCAGGT 58.948 55.000 0.00 0.00 0.00 4.00
181 182 1.342074 TCGGATCTTCATAGCCCAGG 58.658 55.000 0.00 0.00 0.00 4.45
182 183 2.354503 CCATCGGATCTTCATAGCCCAG 60.355 54.545 0.00 0.00 0.00 4.45
183 184 1.625315 CCATCGGATCTTCATAGCCCA 59.375 52.381 0.00 0.00 0.00 5.36
184 185 1.625818 ACCATCGGATCTTCATAGCCC 59.374 52.381 0.00 0.00 0.00 5.19
185 186 2.300152 TGACCATCGGATCTTCATAGCC 59.700 50.000 0.00 0.00 0.00 3.93
186 187 3.321497 GTGACCATCGGATCTTCATAGC 58.679 50.000 0.00 0.00 0.00 2.97
187 188 3.253432 TCGTGACCATCGGATCTTCATAG 59.747 47.826 0.00 1.51 0.00 2.23
188 189 3.219281 TCGTGACCATCGGATCTTCATA 58.781 45.455 0.00 0.00 0.00 2.15
189 190 2.031870 TCGTGACCATCGGATCTTCAT 58.968 47.619 0.00 0.00 0.00 2.57
190 191 1.470051 TCGTGACCATCGGATCTTCA 58.530 50.000 0.00 0.00 0.00 3.02
191 192 2.464865 CTTCGTGACCATCGGATCTTC 58.535 52.381 0.00 0.00 0.00 2.87
192 193 1.137086 CCTTCGTGACCATCGGATCTT 59.863 52.381 0.00 0.00 0.00 2.40
193 194 0.747255 CCTTCGTGACCATCGGATCT 59.253 55.000 0.00 0.00 0.00 2.75
194 195 0.876342 GCCTTCGTGACCATCGGATC 60.876 60.000 0.00 0.00 0.00 3.36
195 196 1.144057 GCCTTCGTGACCATCGGAT 59.856 57.895 0.00 0.00 0.00 4.18
196 197 2.577059 GCCTTCGTGACCATCGGA 59.423 61.111 0.00 0.00 0.00 4.55
197 198 2.629050 ATCGCCTTCGTGACCATCGG 62.629 60.000 0.00 0.00 36.96 4.18
198 199 1.209275 GATCGCCTTCGTGACCATCG 61.209 60.000 0.00 0.00 36.96 3.84
199 200 1.209275 CGATCGCCTTCGTGACCATC 61.209 60.000 0.26 0.00 36.96 3.51
200 201 1.226974 CGATCGCCTTCGTGACCAT 60.227 57.895 0.26 0.00 36.96 3.55
201 202 2.180769 CGATCGCCTTCGTGACCA 59.819 61.111 0.26 0.00 36.96 4.02
202 203 2.582498 CCGATCGCCTTCGTGACC 60.582 66.667 10.32 0.00 37.42 4.02
203 204 3.255379 GCCGATCGCCTTCGTGAC 61.255 66.667 10.32 0.00 37.42 3.67
204 205 4.847516 CGCCGATCGCCTTCGTGA 62.848 66.667 10.32 0.00 37.42 4.35
218 219 4.581648 GATCTTTCTGCGCGCGCC 62.582 66.667 46.85 30.93 41.09 6.53
219 220 4.581648 GGATCTTTCTGCGCGCGC 62.582 66.667 45.02 45.02 42.35 6.86
220 221 2.421835 GATGGATCTTTCTGCGCGCG 62.422 60.000 28.44 28.44 0.00 6.86
221 222 1.278038 GATGGATCTTTCTGCGCGC 59.722 57.895 27.26 27.26 0.00 6.86
222 223 1.561730 CGATGGATCTTTCTGCGCG 59.438 57.895 0.00 0.00 0.00 6.86
223 224 0.811616 ACCGATGGATCTTTCTGCGC 60.812 55.000 0.00 0.00 0.00 6.09
224 225 1.656652 AACCGATGGATCTTTCTGCG 58.343 50.000 0.00 0.00 0.00 5.18
225 226 4.440839 AAAAACCGATGGATCTTTCTGC 57.559 40.909 0.00 0.00 0.00 4.26
247 248 3.072915 TGGATCTCTCTGCCACTCAAAAA 59.927 43.478 0.00 0.00 0.00 1.94
248 249 2.639347 TGGATCTCTCTGCCACTCAAAA 59.361 45.455 0.00 0.00 0.00 2.44
249 250 2.259917 TGGATCTCTCTGCCACTCAAA 58.740 47.619 0.00 0.00 0.00 2.69
250 251 1.942776 TGGATCTCTCTGCCACTCAA 58.057 50.000 0.00 0.00 0.00 3.02
251 252 2.037901 GATGGATCTCTCTGCCACTCA 58.962 52.381 0.00 0.00 33.93 3.41
252 253 1.000385 CGATGGATCTCTCTGCCACTC 60.000 57.143 0.00 0.00 33.93 3.51
253 254 1.039068 CGATGGATCTCTCTGCCACT 58.961 55.000 0.00 0.00 33.93 4.00
254 255 0.033228 CCGATGGATCTCTCTGCCAC 59.967 60.000 0.00 0.00 33.93 5.01
255 256 1.117749 CCCGATGGATCTCTCTGCCA 61.118 60.000 0.00 0.00 35.91 4.92
256 257 1.118356 ACCCGATGGATCTCTCTGCC 61.118 60.000 0.00 0.00 34.81 4.85
257 258 0.033228 CACCCGATGGATCTCTCTGC 59.967 60.000 0.00 0.00 34.81 4.26
258 259 1.697284 TCACCCGATGGATCTCTCTG 58.303 55.000 0.00 0.00 34.81 3.35
259 260 2.035632 GTTCACCCGATGGATCTCTCT 58.964 52.381 0.00 0.00 34.81 3.10
260 261 1.269309 CGTTCACCCGATGGATCTCTC 60.269 57.143 0.00 0.00 34.81 3.20
261 262 0.747255 CGTTCACCCGATGGATCTCT 59.253 55.000 0.00 0.00 34.81 3.10
262 263 0.249489 CCGTTCACCCGATGGATCTC 60.249 60.000 0.00 0.00 34.81 2.75
263 264 0.686441 TCCGTTCACCCGATGGATCT 60.686 55.000 0.00 0.00 34.81 2.75
264 265 0.177141 TTCCGTTCACCCGATGGATC 59.823 55.000 0.00 0.00 34.81 3.36
265 266 0.178068 CTTCCGTTCACCCGATGGAT 59.822 55.000 0.00 0.00 34.81 3.41
266 267 1.594833 CTTCCGTTCACCCGATGGA 59.405 57.895 0.00 0.00 34.81 3.41
267 268 2.106683 GCTTCCGTTCACCCGATGG 61.107 63.158 0.00 0.00 37.80 3.51
268 269 2.452813 CGCTTCCGTTCACCCGATG 61.453 63.158 0.00 0.00 0.00 3.84
269 270 2.125673 CGCTTCCGTTCACCCGAT 60.126 61.111 0.00 0.00 0.00 4.18
278 279 7.384168 CTTTTGTAAAAGGAAAACGCTTCCGT 61.384 38.462 10.38 5.55 44.24 4.69
279 280 3.612472 TGTAAAAGGAAAACGCTTCCG 57.388 42.857 10.38 0.00 43.23 4.30
280 281 5.276678 GCTTTTGTAAAAGGAAAACGCTTCC 60.277 40.000 16.34 8.51 44.24 3.46
281 282 5.289917 TGCTTTTGTAAAAGGAAAACGCTTC 59.710 36.000 16.34 0.00 42.24 3.86
282 283 5.172205 TGCTTTTGTAAAAGGAAAACGCTT 58.828 33.333 16.34 0.00 42.24 4.68
283 284 4.749976 TGCTTTTGTAAAAGGAAAACGCT 58.250 34.783 16.34 0.00 42.24 5.07
284 285 4.801516 TCTGCTTTTGTAAAAGGAAAACGC 59.198 37.500 16.34 4.39 44.05 4.84
285 286 6.033966 ACTCTGCTTTTGTAAAAGGAAAACG 58.966 36.000 16.34 4.79 44.05 3.60
286 287 8.920509 TTACTCTGCTTTTGTAAAAGGAAAAC 57.079 30.769 16.34 3.03 44.05 2.43
288 289 9.528018 CATTTACTCTGCTTTTGTAAAAGGAAA 57.472 29.630 16.34 7.04 44.05 3.13
289 290 8.141268 CCATTTACTCTGCTTTTGTAAAAGGAA 58.859 33.333 16.34 6.37 44.05 3.36
290 291 7.657336 CCATTTACTCTGCTTTTGTAAAAGGA 58.343 34.615 16.34 13.36 42.62 3.36
291 292 6.366061 GCCATTTACTCTGCTTTTGTAAAAGG 59.634 38.462 16.34 12.06 44.24 3.11
292 293 6.366061 GGCCATTTACTCTGCTTTTGTAAAAG 59.634 38.462 11.71 11.71 46.25 2.27
293 294 6.220201 GGCCATTTACTCTGCTTTTGTAAAA 58.780 36.000 0.00 0.00 38.89 1.52
294 295 5.279256 GGGCCATTTACTCTGCTTTTGTAAA 60.279 40.000 4.39 0.00 39.46 2.01
295 296 4.219725 GGGCCATTTACTCTGCTTTTGTAA 59.780 41.667 4.39 0.00 0.00 2.41
296 297 3.761752 GGGCCATTTACTCTGCTTTTGTA 59.238 43.478 4.39 0.00 0.00 2.41
297 298 2.562738 GGGCCATTTACTCTGCTTTTGT 59.437 45.455 4.39 0.00 0.00 2.83
298 299 2.562298 TGGGCCATTTACTCTGCTTTTG 59.438 45.455 0.00 0.00 0.00 2.44
299 300 2.827921 CTGGGCCATTTACTCTGCTTTT 59.172 45.455 6.72 0.00 0.00 2.27
300 301 2.450476 CTGGGCCATTTACTCTGCTTT 58.550 47.619 6.72 0.00 0.00 3.51
301 302 1.957113 GCTGGGCCATTTACTCTGCTT 60.957 52.381 6.72 0.00 0.00 3.91
302 303 0.394899 GCTGGGCCATTTACTCTGCT 60.395 55.000 6.72 0.00 0.00 4.24
303 304 2.110296 GCTGGGCCATTTACTCTGC 58.890 57.895 6.72 0.00 0.00 4.26
326 327 3.294493 CTTGTGGTTGGGCCGTGG 61.294 66.667 0.00 0.00 41.21 4.94
327 328 2.070654 GAACTTGTGGTTGGGCCGTG 62.071 60.000 0.00 0.00 41.21 4.94
328 329 1.826487 GAACTTGTGGTTGGGCCGT 60.826 57.895 0.00 0.00 41.21 5.68
329 330 1.388065 TTGAACTTGTGGTTGGGCCG 61.388 55.000 0.00 0.00 41.21 6.13
330 331 0.827368 TTTGAACTTGTGGTTGGGCC 59.173 50.000 0.00 0.00 38.41 5.80
331 332 1.754226 TCTTTGAACTTGTGGTTGGGC 59.246 47.619 0.00 0.00 38.41 5.36
332 333 4.464069 TTTCTTTGAACTTGTGGTTGGG 57.536 40.909 0.00 0.00 38.41 4.12
364 366 2.081462 CTGATGGGGTTTCGTGGTTAC 58.919 52.381 0.00 0.00 0.00 2.50
434 436 2.050350 CGGAGGAGGAACGCTGGTA 61.050 63.158 0.00 0.00 0.00 3.25
435 437 3.382832 CGGAGGAGGAACGCTGGT 61.383 66.667 0.00 0.00 0.00 4.00
436 438 3.068691 TCGGAGGAGGAACGCTGG 61.069 66.667 0.00 0.00 0.00 4.85
437 439 2.182030 GTCGGAGGAGGAACGCTG 59.818 66.667 0.00 0.00 0.00 5.18
624 914 2.367512 AGGGCATCTGGAGGGGAC 60.368 66.667 0.00 0.00 0.00 4.46
1072 1362 3.461773 CGCCTCCATGTCTCCCGT 61.462 66.667 0.00 0.00 0.00 5.28
1186 1476 3.503363 GTCCCGTGCAGCATCAGC 61.503 66.667 0.00 0.00 42.56 4.26
1201 1491 3.603532 TCTTCATTGTCTCCAGCATGTC 58.396 45.455 0.00 0.00 0.00 3.06
1231 1521 2.047274 CACCACGTTCGGCTCCAT 60.047 61.111 0.00 0.00 0.00 3.41
1259 1549 2.238942 ACAACACTCAGCGATGAACA 57.761 45.000 4.32 0.00 0.00 3.18
1368 1658 1.541588 GTCCTGCAAAGTCCATCAACC 59.458 52.381 0.00 0.00 0.00 3.77
1407 1697 4.166725 TCCATCTCCCTGAAAAGTGCATAT 59.833 41.667 0.00 0.00 0.00 1.78
1483 1773 4.697756 CCTCCGCGCCTTCCACAA 62.698 66.667 0.00 0.00 0.00 3.33
1494 1784 4.459089 GACTCACTGCCCCTCCGC 62.459 72.222 0.00 0.00 0.00 5.54
1505 1795 1.269166 CAATAGACCGTGCGACTCAC 58.731 55.000 0.00 0.00 42.23 3.51
1578 1868 1.598701 GCTTGCCCAACCAGTCCATC 61.599 60.000 0.00 0.00 0.00 3.51
1625 1915 1.872952 CCGACAGAGCACAATGAAACA 59.127 47.619 0.00 0.00 0.00 2.83
1631 1921 4.406648 TGATTATCCGACAGAGCACAAT 57.593 40.909 0.00 0.00 0.00 2.71
1668 1958 5.702209 TGCATCGATGAGTACGGTATAAGTA 59.298 40.000 29.20 0.00 0.00 2.24
1707 1997 0.743097 GCTCTGCCCCATCAACATTC 59.257 55.000 0.00 0.00 0.00 2.67
1752 2042 5.403166 CGTAACTACATTTGGACGAACAGAA 59.597 40.000 0.00 0.00 32.20 3.02
1813 2103 1.311859 TCAGTTGCCTTGTCAAGCAG 58.688 50.000 7.09 0.00 40.73 4.24
1896 2186 3.307691 CCTGGTACTTGAAGAAGCCATCA 60.308 47.826 0.00 0.00 31.68 3.07
1913 2203 1.303155 GCTGCTTCTTGCTCCTGGT 60.303 57.895 0.00 0.00 43.37 4.00
1927 2217 2.169832 TGGTACAAGTCAAGAGCTGC 57.830 50.000 0.00 0.00 31.92 5.25
2142 2432 5.818136 TCAACTCTTGACCAACTTTGAAG 57.182 39.130 0.00 0.00 34.08 3.02
2157 2447 3.385111 ACAAGTTTCTCTCCGTCAACTCT 59.615 43.478 0.00 0.00 0.00 3.24
2295 2585 9.307121 GCAGTGATCATAGTATTATATGTCACC 57.693 37.037 0.00 7.29 40.43 4.02
2446 2736 3.139077 ACAAAAACTTCGCCTTCTCGAT 58.861 40.909 0.00 0.00 38.37 3.59
2557 2847 8.609176 CATCCATTCATGAATTTCCAAAATCAC 58.391 33.333 18.41 0.00 31.25 3.06
2603 2893 9.803315 GAAGTGTATTATAGACAGTGATGTCAA 57.197 33.333 10.72 0.00 41.02 3.18
2607 2897 7.114106 CGCAGAAGTGTATTATAGACAGTGATG 59.886 40.741 0.00 3.16 30.80 3.07
2646 2936 4.796038 AGCTTTTCTTGTCATTCCATGG 57.204 40.909 4.97 4.97 0.00 3.66
2704 2994 2.639347 TGAATGTGATGGTGTCTGGAGT 59.361 45.455 0.00 0.00 0.00 3.85
2706 2996 3.786368 TTGAATGTGATGGTGTCTGGA 57.214 42.857 0.00 0.00 0.00 3.86
2739 3029 0.804989 GGGTGCTCTTGAAATGACCG 59.195 55.000 0.00 0.00 0.00 4.79
3060 3350 4.935205 TGACTCATCATTCCCACTTTAACG 59.065 41.667 0.00 0.00 0.00 3.18
3168 3458 5.123027 CACCTCTGTTCCATTTCTAAGCTTC 59.877 44.000 0.00 0.00 0.00 3.86
3234 3524 4.181309 AGAACTAAGAGTGCCTTTCGAG 57.819 45.455 0.00 0.00 36.34 4.04
3355 3645 4.214971 CCATCATCTATGCTTGCTTGGTAC 59.785 45.833 0.00 0.00 33.92 3.34
3395 3685 0.179200 CAAGCCGCGGTCATACAAAC 60.179 55.000 28.70 6.22 0.00 2.93
3398 3688 2.817834 GCAAGCCGCGGTCATACA 60.818 61.111 28.70 0.00 0.00 2.29
3460 3750 3.428532 ACATACTTACAGGTGACTCGGT 58.571 45.455 0.00 0.00 40.21 4.69
3478 3768 5.308825 CCAACTAAACAGAGAACCAGACAT 58.691 41.667 0.00 0.00 0.00 3.06
3588 3881 1.270571 TGAAGCAGCACCGTCATACAA 60.271 47.619 0.00 0.00 0.00 2.41
3705 3998 1.451567 CACATGCCTCTGGAGCCTG 60.452 63.158 0.00 0.00 32.79 4.85
3706 3999 0.987081 ATCACATGCCTCTGGAGCCT 60.987 55.000 0.00 0.00 0.00 4.58
3707 4000 0.818445 CATCACATGCCTCTGGAGCC 60.818 60.000 0.00 0.00 0.00 4.70
3714 4008 1.108776 ATGCCAACATCACATGCCTC 58.891 50.000 0.00 0.00 0.00 4.70
3730 4024 7.228507 ACCTCCAAATAAAAGGAAACAAAATGC 59.771 33.333 0.00 0.00 34.16 3.56
3787 4081 1.549203 AGGACCAAACCATCACATGC 58.451 50.000 0.00 0.00 0.00 4.06
3838 4132 2.363306 TGCACCTCCATGACAAGTTT 57.637 45.000 0.00 0.00 0.00 2.66
3869 4163 3.512516 GCGAGCTGTGATTGGCCC 61.513 66.667 0.00 0.00 0.00 5.80
3909 4203 3.557903 ATGCAGCCCGCTGACAAGT 62.558 57.895 20.62 1.88 46.30 3.16
3912 4206 1.902918 AAAATGCAGCCCGCTGACA 60.903 52.632 20.62 16.54 46.30 3.58
3954 4248 0.323302 TGCACTGCGGGTTGATAAGA 59.677 50.000 0.00 0.00 0.00 2.10
3995 4297 8.966868 TCCAAAGAACATTCCAAAGAATATACC 58.033 33.333 0.00 0.00 40.89 2.73
3999 4301 9.927668 GAATTCCAAAGAACATTCCAAAGAATA 57.072 29.630 0.00 0.00 36.48 1.75
4000 4302 8.654094 AGAATTCCAAAGAACATTCCAAAGAAT 58.346 29.630 0.65 0.00 37.20 2.40
4001 4303 7.927629 CAGAATTCCAAAGAACATTCCAAAGAA 59.072 33.333 0.65 0.00 33.97 2.52
4002 4304 7.069826 ACAGAATTCCAAAGAACATTCCAAAGA 59.930 33.333 0.65 0.00 33.97 2.52
4003 4305 7.212274 ACAGAATTCCAAAGAACATTCCAAAG 58.788 34.615 0.65 0.00 33.97 2.77
4004 4306 7.123355 ACAGAATTCCAAAGAACATTCCAAA 57.877 32.000 0.65 0.00 33.97 3.28
4005 4307 6.729690 ACAGAATTCCAAAGAACATTCCAA 57.270 33.333 0.65 0.00 33.97 3.53
4006 4308 6.323482 TCAACAGAATTCCAAAGAACATTCCA 59.677 34.615 0.65 0.00 33.97 3.53
4007 4309 6.748132 TCAACAGAATTCCAAAGAACATTCC 58.252 36.000 0.65 0.00 33.97 3.01
4008 4310 8.647143 TTTCAACAGAATTCCAAAGAACATTC 57.353 30.769 0.65 0.00 33.97 2.67
4009 4311 7.712205 CCTTTCAACAGAATTCCAAAGAACATT 59.288 33.333 0.65 0.00 33.97 2.71
4010 4312 7.147672 ACCTTTCAACAGAATTCCAAAGAACAT 60.148 33.333 0.65 0.00 33.97 2.71
4011 4313 6.154363 ACCTTTCAACAGAATTCCAAAGAACA 59.846 34.615 0.65 0.00 33.97 3.18
4012 4314 6.573434 ACCTTTCAACAGAATTCCAAAGAAC 58.427 36.000 0.65 0.00 33.97 3.01
4013 4315 6.790232 ACCTTTCAACAGAATTCCAAAGAA 57.210 33.333 0.65 0.00 36.15 2.52
4014 4316 6.790232 AACCTTTCAACAGAATTCCAAAGA 57.210 33.333 0.65 0.00 0.00 2.52
4067 4825 7.598493 GCATGCACCTTTCAGAAAACTTAATTA 59.402 33.333 14.21 0.00 0.00 1.40
4069 4827 5.928264 GCATGCACCTTTCAGAAAACTTAAT 59.072 36.000 14.21 0.00 0.00 1.40
4072 4830 3.385755 AGCATGCACCTTTCAGAAAACTT 59.614 39.130 21.98 0.00 0.00 2.66
4132 4890 3.589735 TGCACCAAGGGAATTAGTTAGGA 59.410 43.478 0.00 0.00 0.00 2.94
4194 4952 4.168101 ACAGGTTCCATTCCTAGAGACAA 58.832 43.478 0.00 0.00 33.54 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.