Multiple sequence alignment - TraesCS5D01G078200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G078200 chr5D 100.000 5560 0 0 1 5560 78050699 78056258 0.000000e+00 10268.0
1 TraesCS5D01G078200 chr5D 88.526 2083 203 17 1740 3793 78010360 78012435 0.000000e+00 2490.0
2 TraesCS5D01G078200 chr5D 80.556 1692 236 58 3404 5054 77738895 77740534 0.000000e+00 1216.0
3 TraesCS5D01G078200 chr5D 87.677 990 112 8 2365 3350 77737708 77738691 0.000000e+00 1144.0
4 TraesCS5D01G078200 chr5D 92.341 457 34 1 1854 2310 77737252 77737707 0.000000e+00 649.0
5 TraesCS5D01G078200 chr5D 80.518 734 119 16 3859 4589 78012474 78013186 4.900000e-150 542.0
6 TraesCS5D01G078200 chr5D 82.863 531 36 23 782 1284 78008878 78009381 5.150000e-115 425.0
7 TraesCS5D01G078200 chr5D 83.810 420 58 5 1199 1611 78009466 78009882 1.880000e-104 390.0
8 TraesCS5D01G078200 chr5D 90.566 212 16 1 1574 1785 77737045 77737252 1.530000e-70 278.0
9 TraesCS5D01G078200 chr5D 82.353 119 17 3 753 869 77735849 77735965 3.540000e-17 100.0
10 TraesCS5D01G078200 chr5B 93.982 4952 192 35 390 5267 87763327 87768246 0.000000e+00 7396.0
11 TraesCS5D01G078200 chr5B 93.187 2407 108 23 668 3044 87967429 87969809 0.000000e+00 3485.0
12 TraesCS5D01G078200 chr5B 93.143 1925 87 17 3356 5267 87970317 87972209 0.000000e+00 2782.0
13 TraesCS5D01G078200 chr5B 87.009 2494 248 28 1343 3801 87650101 87652553 0.000000e+00 2741.0
14 TraesCS5D01G078200 chr5B 81.643 1716 220 53 3401 5054 87293945 87295627 0.000000e+00 1336.0
15 TraesCS5D01G078200 chr5B 87.439 820 92 7 2533 3350 87292933 87293743 0.000000e+00 933.0
16 TraesCS5D01G078200 chr5B 92.779 457 32 1 1854 2310 87291075 87291530 0.000000e+00 660.0
17 TraesCS5D01G078200 chr5B 81.855 744 114 11 3859 4600 87652583 87653307 1.710000e-169 606.0
18 TraesCS5D01G078200 chr5B 92.484 306 23 0 3043 3348 87969968 87970273 6.610000e-119 438.0
19 TraesCS5D01G078200 chr5B 76.981 934 83 59 415 1284 87649000 87649865 4.010000e-111 412.0
20 TraesCS5D01G078200 chr5B 90.756 238 16 1 394 625 87967187 87967424 4.180000e-81 313.0
21 TraesCS5D01G078200 chr5B 89.623 212 18 1 1574 1785 87290868 87291075 3.300000e-67 267.0
22 TraesCS5D01G078200 chr5B 80.997 321 42 11 4885 5202 87653541 87653845 2.590000e-58 237.0
23 TraesCS5D01G078200 chr5B 83.399 253 28 7 5313 5560 87972451 87972694 7.250000e-54 222.0
24 TraesCS5D01G078200 chr5B 85.714 112 15 1 1197 1307 87649990 87650101 3.520000e-22 117.0
25 TraesCS5D01G078200 chr5B 87.755 98 12 0 753 850 87289816 87289913 1.270000e-21 115.0
26 TraesCS5D01G078200 chr5B 88.889 63 4 1 332 394 87763236 87763295 2.150000e-09 75.0
27 TraesCS5D01G078200 chr5B 100.000 28 0 0 231 258 430093699 430093672 1.000000e-02 52.8
28 TraesCS5D01G078200 chr5B 100.000 28 0 0 231 258 430190817 430190790 1.000000e-02 52.8
29 TraesCS5D01G078200 chr5A 94.824 4250 174 35 778 5006 74671141 74675365 0.000000e+00 6588.0
30 TraesCS5D01G078200 chr5A 86.262 2919 324 35 1740 4618 74590201 74593082 0.000000e+00 3097.0
31 TraesCS5D01G078200 chr5A 83.740 1230 160 26 3401 4618 74497802 74499003 0.000000e+00 1127.0
32 TraesCS5D01G078200 chr5A 86.869 990 117 9 2365 3350 74496621 74497601 0.000000e+00 1096.0
33 TraesCS5D01G078200 chr5A 95.669 508 18 2 281 784 74670219 74670726 0.000000e+00 813.0
34 TraesCS5D01G078200 chr5A 92.560 457 33 1 1854 2310 74496165 74496620 0.000000e+00 654.0
35 TraesCS5D01G078200 chr5A 85.913 575 49 15 718 1284 74589054 74589604 8.030000e-163 584.0
36 TraesCS5D01G078200 chr5A 86.015 522 63 7 1197 1713 74589686 74590202 8.140000e-153 551.0
37 TraesCS5D01G078200 chr5A 92.537 268 20 0 5293 5560 74676342 74676609 8.740000e-103 385.0
38 TraesCS5D01G078200 chr5A 78.733 442 58 23 4639 5053 74499081 74499513 4.270000e-66 263.0
39 TraesCS5D01G078200 chr5A 89.151 212 19 1 1574 1785 74495958 74496165 1.540000e-65 261.0
40 TraesCS5D01G078200 chr5A 81.735 219 18 12 415 633 74588795 74588991 4.460000e-36 163.0
41 TraesCS5D01G078200 chr5A 87.129 101 13 0 753 853 74494957 74495057 1.270000e-21 115.0
42 TraesCS5D01G078200 chr5A 100.000 28 0 0 231 258 575237474 575237501 1.000000e-02 52.8
43 TraesCS5D01G078200 chr1D 88.968 562 57 3 1495 2055 16107288 16106731 0.000000e+00 689.0
44 TraesCS5D01G078200 chrUn 100.000 28 0 0 231 258 224617304 224617331 1.000000e-02 52.8
45 TraesCS5D01G078200 chrUn 100.000 28 0 0 231 258 249626134 249626161 1.000000e-02 52.8
46 TraesCS5D01G078200 chrUn 100.000 28 0 0 231 258 405746965 405746992 1.000000e-02 52.8
47 TraesCS5D01G078200 chr3D 100.000 28 0 0 231 258 528948915 528948942 1.000000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G078200 chr5D 78050699 78056258 5559 False 10268.000000 10268 100.000000 1 5560 1 chr5D.!!$F1 5559
1 TraesCS5D01G078200 chr5D 78008878 78013186 4308 False 961.750000 2490 83.929250 782 4589 4 chr5D.!!$F3 3807
2 TraesCS5D01G078200 chr5D 77735849 77740534 4685 False 677.400000 1216 86.698600 753 5054 5 chr5D.!!$F2 4301
3 TraesCS5D01G078200 chr5B 87763236 87768246 5010 False 3735.500000 7396 91.435500 332 5267 2 chr5B.!!$F3 4935
4 TraesCS5D01G078200 chr5B 87967187 87972694 5507 False 1448.000000 3485 90.593800 394 5560 5 chr5B.!!$F4 5166
5 TraesCS5D01G078200 chr5B 87649000 87653845 4845 False 822.600000 2741 82.511200 415 5202 5 chr5B.!!$F2 4787
6 TraesCS5D01G078200 chr5B 87289816 87295627 5811 False 662.200000 1336 87.847800 753 5054 5 chr5B.!!$F1 4301
7 TraesCS5D01G078200 chr5A 74670219 74676609 6390 False 2595.333333 6588 94.343333 281 5560 3 chr5A.!!$F4 5279
8 TraesCS5D01G078200 chr5A 74588795 74593082 4287 False 1098.750000 3097 84.981250 415 4618 4 chr5A.!!$F3 4203
9 TraesCS5D01G078200 chr5A 74494957 74499513 4556 False 586.000000 1127 86.363667 753 5053 6 chr5A.!!$F2 4300
10 TraesCS5D01G078200 chr1D 16106731 16107288 557 True 689.000000 689 88.968000 1495 2055 1 chr1D.!!$R1 560

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
150 151 0.101219 GACCCGATCAAATGCAAGCC 59.899 55.000 0.00 0.00 0.00 4.35 F
165 166 0.179000 AAGCCGGATTGAGAAGCGAT 59.821 50.000 2.94 0.00 0.00 4.58 F
174 175 0.179073 TGAGAAGCGATGCTAAGCCC 60.179 55.000 0.00 0.00 38.25 5.19 F
306 307 0.316772 CACCTGGTCTATCGTACGCG 60.317 60.000 11.24 3.53 39.92 6.01 F
1845 3479 0.179009 AGGGCTGCGATGCACATTAT 60.179 50.000 5.20 0.00 39.15 1.28 F
2342 3978 1.546923 TCGATCGCTACTGGGTGAAAA 59.453 47.619 11.09 0.00 0.00 2.29 F
2379 4015 2.369860 TGGATCAAGCAACAGTGAGTCT 59.630 45.455 0.00 0.00 0.00 3.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1130 1721 1.284785 CCCAGAGGAAAAGGGCATACA 59.715 52.381 0.00 0.00 35.44 2.29 R
1158 1749 1.503542 CAGCCAGAATGCCAACGAC 59.496 57.895 0.00 0.00 31.97 4.34 R
1737 3370 2.479389 CGGCGCCATGACAAATGTAATT 60.479 45.455 28.98 0.00 38.98 1.40 R
2331 3967 0.958822 GGCATCGTTTTTCACCCAGT 59.041 50.000 0.00 0.00 0.00 4.00 R
3431 6627 2.626743 GGCAGCATAATCCTTGCAGATT 59.373 45.455 6.45 6.45 42.62 2.40 R
4040 7253 0.539438 CTCCTCTAGCTCCTCGCCAT 60.539 60.000 0.00 0.00 40.39 4.40 R
4612 7863 5.220710 ACACAAGCTACTCTCAGTTCATT 57.779 39.130 0.00 0.00 0.00 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.517037 GGTTGAAGAACACGTCATAGAAG 57.483 43.478 0.00 0.00 33.27 2.85
23 24 5.227908 GGTTGAAGAACACGTCATAGAAGA 58.772 41.667 0.00 0.00 33.27 2.87
24 25 5.346281 GGTTGAAGAACACGTCATAGAAGAG 59.654 44.000 0.00 0.00 33.27 2.85
25 26 4.486090 TGAAGAACACGTCATAGAAGAGC 58.514 43.478 0.00 0.00 0.00 4.09
26 27 4.218635 TGAAGAACACGTCATAGAAGAGCT 59.781 41.667 0.00 0.00 0.00 4.09
27 28 4.103365 AGAACACGTCATAGAAGAGCTG 57.897 45.455 0.00 0.00 0.00 4.24
28 29 2.949451 ACACGTCATAGAAGAGCTGG 57.051 50.000 0.00 0.00 0.00 4.85
29 30 1.134965 ACACGTCATAGAAGAGCTGGC 60.135 52.381 0.00 0.00 0.00 4.85
30 31 1.135915 CACGTCATAGAAGAGCTGGCT 59.864 52.381 0.00 0.00 0.00 4.75
31 32 1.827969 ACGTCATAGAAGAGCTGGCTT 59.172 47.619 0.00 0.00 0.00 4.35
32 33 2.200067 CGTCATAGAAGAGCTGGCTTG 58.800 52.381 0.00 0.00 0.00 4.01
33 34 2.417924 CGTCATAGAAGAGCTGGCTTGT 60.418 50.000 0.00 0.00 0.00 3.16
34 35 3.604582 GTCATAGAAGAGCTGGCTTGTT 58.395 45.455 0.00 0.00 0.00 2.83
35 36 4.678044 CGTCATAGAAGAGCTGGCTTGTTA 60.678 45.833 0.00 0.00 0.00 2.41
36 37 5.178797 GTCATAGAAGAGCTGGCTTGTTAA 58.821 41.667 0.00 0.00 0.00 2.01
37 38 5.643777 GTCATAGAAGAGCTGGCTTGTTAAA 59.356 40.000 0.00 0.00 0.00 1.52
38 39 5.877012 TCATAGAAGAGCTGGCTTGTTAAAG 59.123 40.000 0.00 0.00 36.41 1.85
39 40 4.357918 AGAAGAGCTGGCTTGTTAAAGA 57.642 40.909 0.00 0.00 35.19 2.52
40 41 4.718961 AGAAGAGCTGGCTTGTTAAAGAA 58.281 39.130 0.00 0.00 35.19 2.52
41 42 4.759183 AGAAGAGCTGGCTTGTTAAAGAAG 59.241 41.667 0.00 0.00 35.19 2.85
42 43 4.092116 AGAGCTGGCTTGTTAAAGAAGT 57.908 40.909 0.00 0.00 35.19 3.01
43 44 4.068599 AGAGCTGGCTTGTTAAAGAAGTC 58.931 43.478 0.00 0.00 35.19 3.01
44 45 4.068599 GAGCTGGCTTGTTAAAGAAGTCT 58.931 43.478 0.00 0.00 35.19 3.24
45 46 4.464947 AGCTGGCTTGTTAAAGAAGTCTT 58.535 39.130 0.00 0.00 35.19 3.01
46 47 4.276926 AGCTGGCTTGTTAAAGAAGTCTTG 59.723 41.667 0.00 0.00 36.12 3.02
47 48 4.275936 GCTGGCTTGTTAAAGAAGTCTTGA 59.724 41.667 0.00 0.00 36.12 3.02
48 49 5.048434 GCTGGCTTGTTAAAGAAGTCTTGAT 60.048 40.000 0.00 0.00 36.12 2.57
49 50 6.317789 TGGCTTGTTAAAGAAGTCTTGATG 57.682 37.500 0.00 0.00 36.12 3.07
50 51 5.827797 TGGCTTGTTAAAGAAGTCTTGATGT 59.172 36.000 0.00 0.00 36.12 3.06
51 52 6.145535 GGCTTGTTAAAGAAGTCTTGATGTG 58.854 40.000 0.00 0.00 36.12 3.21
52 53 5.626955 GCTTGTTAAAGAAGTCTTGATGTGC 59.373 40.000 0.00 0.00 36.12 4.57
53 54 6.514048 GCTTGTTAAAGAAGTCTTGATGTGCT 60.514 38.462 0.00 0.00 36.12 4.40
54 55 6.304356 TGTTAAAGAAGTCTTGATGTGCTG 57.696 37.500 0.00 0.00 36.12 4.41
55 56 5.239306 TGTTAAAGAAGTCTTGATGTGCTGG 59.761 40.000 0.00 0.00 36.12 4.85
56 57 2.486472 AGAAGTCTTGATGTGCTGGG 57.514 50.000 0.00 0.00 0.00 4.45
57 58 1.701847 AGAAGTCTTGATGTGCTGGGT 59.298 47.619 0.00 0.00 0.00 4.51
58 59 2.107204 AGAAGTCTTGATGTGCTGGGTT 59.893 45.455 0.00 0.00 0.00 4.11
59 60 2.191128 AGTCTTGATGTGCTGGGTTC 57.809 50.000 0.00 0.00 0.00 3.62
60 61 0.798776 GTCTTGATGTGCTGGGTTCG 59.201 55.000 0.00 0.00 0.00 3.95
61 62 0.321564 TCTTGATGTGCTGGGTTCGG 60.322 55.000 0.00 0.00 0.00 4.30
62 63 1.926511 CTTGATGTGCTGGGTTCGGC 61.927 60.000 0.00 0.00 45.23 5.54
63 64 3.134127 GATGTGCTGGGTTCGGCC 61.134 66.667 0.00 0.00 44.42 6.13
68 69 4.699522 GCTGGGTTCGGCCGTCTT 62.700 66.667 27.15 0.00 39.31 3.01
69 70 2.742372 CTGGGTTCGGCCGTCTTG 60.742 66.667 27.15 8.08 38.44 3.02
72 73 2.746277 GGTTCGGCCGTCTTGCAT 60.746 61.111 27.15 0.00 0.00 3.96
73 74 2.750888 GGTTCGGCCGTCTTGCATC 61.751 63.158 27.15 3.23 0.00 3.91
74 75 2.032634 GTTCGGCCGTCTTGCATCA 61.033 57.895 27.15 0.00 0.00 3.07
75 76 1.741401 TTCGGCCGTCTTGCATCAG 60.741 57.895 27.15 0.00 0.00 2.90
76 77 2.125552 CGGCCGTCTTGCATCAGA 60.126 61.111 19.50 0.00 0.00 3.27
77 78 2.456119 CGGCCGTCTTGCATCAGAC 61.456 63.158 19.50 8.27 40.02 3.51
84 85 2.677199 GTCTTGCATCAGACGTTGAGA 58.323 47.619 2.87 0.00 39.68 3.27
85 86 2.410053 GTCTTGCATCAGACGTTGAGAC 59.590 50.000 2.87 0.00 39.68 3.36
86 87 1.728971 CTTGCATCAGACGTTGAGACC 59.271 52.381 0.00 0.00 39.68 3.85
87 88 0.678950 TGCATCAGACGTTGAGACCA 59.321 50.000 0.00 0.00 39.68 4.02
88 89 1.337167 TGCATCAGACGTTGAGACCAG 60.337 52.381 0.00 0.00 39.68 4.00
89 90 2.001812 CATCAGACGTTGAGACCAGG 57.998 55.000 0.00 0.00 39.68 4.45
90 91 1.273606 CATCAGACGTTGAGACCAGGT 59.726 52.381 0.00 0.00 39.68 4.00
91 92 1.410004 TCAGACGTTGAGACCAGGTT 58.590 50.000 0.00 0.00 0.00 3.50
92 93 1.068588 TCAGACGTTGAGACCAGGTTG 59.931 52.381 0.00 0.00 0.00 3.77
93 94 1.120530 AGACGTTGAGACCAGGTTGT 58.879 50.000 0.00 0.00 0.00 3.32
94 95 1.068741 AGACGTTGAGACCAGGTTGTC 59.931 52.381 0.00 0.00 35.43 3.18
95 96 0.249322 ACGTTGAGACCAGGTTGTCG 60.249 55.000 0.00 0.00 40.26 4.35
96 97 0.249322 CGTTGAGACCAGGTTGTCGT 60.249 55.000 0.00 0.00 40.26 4.34
97 98 1.805120 CGTTGAGACCAGGTTGTCGTT 60.805 52.381 0.00 0.00 40.26 3.85
98 99 1.865340 GTTGAGACCAGGTTGTCGTTC 59.135 52.381 0.00 0.00 40.26 3.95
99 100 1.410004 TGAGACCAGGTTGTCGTTCT 58.590 50.000 0.00 0.00 40.26 3.01
100 101 1.068588 TGAGACCAGGTTGTCGTTCTG 59.931 52.381 0.00 0.00 40.26 3.02
101 102 1.340248 GAGACCAGGTTGTCGTTCTGA 59.660 52.381 0.00 0.00 40.26 3.27
112 113 2.611518 GTCGTTCTGACCAGATTGAGG 58.388 52.381 0.01 0.00 42.04 3.86
113 114 1.550524 TCGTTCTGACCAGATTGAGGG 59.449 52.381 0.01 0.00 37.29 4.30
114 115 1.550524 CGTTCTGACCAGATTGAGGGA 59.449 52.381 0.01 0.00 37.29 4.20
115 116 2.675317 CGTTCTGACCAGATTGAGGGAC 60.675 54.545 0.01 0.00 37.29 4.46
116 117 2.569404 GTTCTGACCAGATTGAGGGACT 59.431 50.000 0.01 0.00 38.48 3.85
117 118 2.907892 TCTGACCAGATTGAGGGACTT 58.092 47.619 0.00 0.00 32.24 3.01
118 119 2.568956 TCTGACCAGATTGAGGGACTTG 59.431 50.000 0.00 0.00 32.24 3.16
119 120 1.630369 TGACCAGATTGAGGGACTTGG 59.370 52.381 0.00 0.00 41.55 3.61
120 121 0.329596 ACCAGATTGAGGGACTTGGC 59.670 55.000 0.00 0.00 41.55 4.52
121 122 0.394899 CCAGATTGAGGGACTTGGCC 60.395 60.000 0.00 0.00 41.55 5.36
122 123 0.745845 CAGATTGAGGGACTTGGCCG 60.746 60.000 0.00 0.00 41.55 6.13
123 124 1.452108 GATTGAGGGACTTGGCCGG 60.452 63.158 0.00 0.00 41.55 6.13
124 125 2.893682 GATTGAGGGACTTGGCCGGG 62.894 65.000 2.18 0.00 41.55 5.73
145 146 2.715624 GGCGACCCGATCAAATGC 59.284 61.111 0.00 0.00 0.00 3.56
146 147 2.112198 GGCGACCCGATCAAATGCA 61.112 57.895 0.00 0.00 0.00 3.96
147 148 1.653094 GGCGACCCGATCAAATGCAA 61.653 55.000 0.00 0.00 0.00 4.08
148 149 0.248215 GCGACCCGATCAAATGCAAG 60.248 55.000 0.00 0.00 0.00 4.01
149 150 0.248215 CGACCCGATCAAATGCAAGC 60.248 55.000 0.00 0.00 0.00 4.01
150 151 0.101219 GACCCGATCAAATGCAAGCC 59.899 55.000 0.00 0.00 0.00 4.35
151 152 1.064621 CCCGATCAAATGCAAGCCG 59.935 57.895 0.00 0.00 0.00 5.52
152 153 1.064621 CCGATCAAATGCAAGCCGG 59.935 57.895 0.00 0.00 0.00 6.13
153 154 1.375853 CCGATCAAATGCAAGCCGGA 61.376 55.000 5.05 0.00 37.87 5.14
154 155 0.664761 CGATCAAATGCAAGCCGGAT 59.335 50.000 5.05 0.00 0.00 4.18
155 156 1.066002 CGATCAAATGCAAGCCGGATT 59.934 47.619 5.05 0.00 37.23 3.01
156 157 2.466846 GATCAAATGCAAGCCGGATTG 58.533 47.619 27.79 27.79 35.56 2.67
157 158 1.543607 TCAAATGCAAGCCGGATTGA 58.456 45.000 35.29 20.14 35.56 2.57
158 159 1.473677 TCAAATGCAAGCCGGATTGAG 59.526 47.619 35.29 17.69 35.56 3.02
159 160 1.473677 CAAATGCAAGCCGGATTGAGA 59.526 47.619 35.29 20.67 35.56 3.27
160 161 1.838112 AATGCAAGCCGGATTGAGAA 58.162 45.000 35.29 19.62 33.83 2.87
161 162 1.386533 ATGCAAGCCGGATTGAGAAG 58.613 50.000 35.29 9.64 31.55 2.85
162 163 1.308069 TGCAAGCCGGATTGAGAAGC 61.308 55.000 35.29 19.95 31.55 3.86
163 164 1.717937 CAAGCCGGATTGAGAAGCG 59.282 57.895 28.15 0.00 31.55 4.68
164 165 0.740868 CAAGCCGGATTGAGAAGCGA 60.741 55.000 28.15 0.00 31.55 4.93
165 166 0.179000 AAGCCGGATTGAGAAGCGAT 59.821 50.000 2.94 0.00 0.00 4.58
166 167 0.531532 AGCCGGATTGAGAAGCGATG 60.532 55.000 5.05 0.00 0.00 3.84
167 168 1.937391 CCGGATTGAGAAGCGATGC 59.063 57.895 0.00 0.00 0.00 3.91
168 169 0.531532 CCGGATTGAGAAGCGATGCT 60.532 55.000 0.00 0.00 42.56 3.79
169 170 1.269778 CCGGATTGAGAAGCGATGCTA 60.270 52.381 0.00 0.00 38.25 3.49
170 171 2.473816 CGGATTGAGAAGCGATGCTAA 58.526 47.619 0.00 0.00 38.25 3.09
171 172 2.474359 CGGATTGAGAAGCGATGCTAAG 59.526 50.000 0.00 0.00 38.25 2.18
172 173 2.222911 GGATTGAGAAGCGATGCTAAGC 59.777 50.000 0.00 0.00 38.25 3.09
173 174 1.656652 TTGAGAAGCGATGCTAAGCC 58.343 50.000 0.00 0.00 38.25 4.35
174 175 0.179073 TGAGAAGCGATGCTAAGCCC 60.179 55.000 0.00 0.00 38.25 5.19
175 176 1.218230 GAGAAGCGATGCTAAGCCCG 61.218 60.000 0.00 0.00 38.25 6.13
176 177 1.227263 GAAGCGATGCTAAGCCCGA 60.227 57.895 0.00 0.00 38.25 5.14
177 178 0.601311 GAAGCGATGCTAAGCCCGAT 60.601 55.000 0.00 0.00 38.25 4.18
178 179 0.882042 AAGCGATGCTAAGCCCGATG 60.882 55.000 0.00 0.00 38.25 3.84
179 180 1.595382 GCGATGCTAAGCCCGATGT 60.595 57.895 0.00 0.00 0.00 3.06
180 181 1.160329 GCGATGCTAAGCCCGATGTT 61.160 55.000 0.00 0.00 0.00 2.71
181 182 1.299541 CGATGCTAAGCCCGATGTTT 58.700 50.000 0.00 0.00 0.00 2.83
182 183 1.670811 CGATGCTAAGCCCGATGTTTT 59.329 47.619 0.00 0.00 0.00 2.43
183 184 2.097466 CGATGCTAAGCCCGATGTTTTT 59.903 45.455 0.00 0.00 0.00 1.94
184 185 3.438360 GATGCTAAGCCCGATGTTTTTG 58.562 45.455 0.00 0.00 0.00 2.44
185 186 2.509569 TGCTAAGCCCGATGTTTTTGA 58.490 42.857 0.00 0.00 0.00 2.69
186 187 2.887783 TGCTAAGCCCGATGTTTTTGAA 59.112 40.909 0.00 0.00 0.00 2.69
187 188 3.319405 TGCTAAGCCCGATGTTTTTGAAA 59.681 39.130 0.00 0.00 0.00 2.69
188 189 4.202161 TGCTAAGCCCGATGTTTTTGAAAA 60.202 37.500 0.00 0.00 0.00 2.29
189 190 4.385748 GCTAAGCCCGATGTTTTTGAAAAG 59.614 41.667 0.00 0.00 0.00 2.27
190 191 2.754472 AGCCCGATGTTTTTGAAAAGC 58.246 42.857 0.00 0.00 0.00 3.51
191 192 2.102252 AGCCCGATGTTTTTGAAAAGCA 59.898 40.909 9.55 9.55 0.00 3.91
192 193 3.066380 GCCCGATGTTTTTGAAAAGCAT 58.934 40.909 17.85 17.85 0.00 3.79
193 194 3.123453 GCCCGATGTTTTTGAAAAGCATC 59.877 43.478 27.09 27.09 35.50 3.91
194 195 4.559153 CCCGATGTTTTTGAAAAGCATCT 58.441 39.130 30.71 11.65 36.02 2.90
195 196 4.386652 CCCGATGTTTTTGAAAAGCATCTG 59.613 41.667 30.71 26.58 36.02 2.90
196 197 5.221880 CCGATGTTTTTGAAAAGCATCTGA 58.778 37.500 30.71 5.27 36.02 3.27
197 198 5.344128 CCGATGTTTTTGAAAAGCATCTGAG 59.656 40.000 30.71 21.03 36.02 3.35
198 199 5.916883 CGATGTTTTTGAAAAGCATCTGAGT 59.083 36.000 30.71 9.86 36.02 3.41
199 200 6.418819 CGATGTTTTTGAAAAGCATCTGAGTT 59.581 34.615 30.71 9.27 36.02 3.01
200 201 7.357859 CGATGTTTTTGAAAAGCATCTGAGTTC 60.358 37.037 30.71 14.97 36.02 3.01
201 202 6.042143 TGTTTTTGAAAAGCATCTGAGTTCC 58.958 36.000 3.00 0.00 0.00 3.62
202 203 4.488126 TTTGAAAAGCATCTGAGTTCCG 57.512 40.909 0.00 0.00 0.00 4.30
203 204 3.126001 TGAAAAGCATCTGAGTTCCGT 57.874 42.857 0.00 0.00 0.00 4.69
204 205 3.476552 TGAAAAGCATCTGAGTTCCGTT 58.523 40.909 0.00 0.00 0.00 4.44
205 206 3.498397 TGAAAAGCATCTGAGTTCCGTTC 59.502 43.478 0.00 0.00 0.00 3.95
206 207 2.100605 AAGCATCTGAGTTCCGTTCC 57.899 50.000 0.00 0.00 0.00 3.62
207 208 1.270907 AGCATCTGAGTTCCGTTCCT 58.729 50.000 0.00 0.00 0.00 3.36
208 209 1.066573 AGCATCTGAGTTCCGTTCCTG 60.067 52.381 0.00 0.00 0.00 3.86
209 210 1.363744 CATCTGAGTTCCGTTCCTGC 58.636 55.000 0.00 0.00 0.00 4.85
210 211 1.066573 CATCTGAGTTCCGTTCCTGCT 60.067 52.381 0.00 0.00 0.00 4.24
211 212 0.603569 TCTGAGTTCCGTTCCTGCTC 59.396 55.000 0.00 0.00 0.00 4.26
212 213 0.734253 CTGAGTTCCGTTCCTGCTCG 60.734 60.000 0.00 0.00 0.00 5.03
213 214 1.446272 GAGTTCCGTTCCTGCTCGG 60.446 63.158 0.00 0.00 46.93 4.63
214 215 2.434359 GTTCCGTTCCTGCTCGGG 60.434 66.667 3.85 0.00 45.79 5.14
215 216 3.702048 TTCCGTTCCTGCTCGGGG 61.702 66.667 3.85 0.00 45.79 5.73
217 218 4.016706 CCGTTCCTGCTCGGGGTT 62.017 66.667 0.00 0.00 42.61 4.11
218 219 2.434359 CGTTCCTGCTCGGGGTTC 60.434 66.667 0.00 0.00 0.00 3.62
219 220 2.747686 GTTCCTGCTCGGGGTTCA 59.252 61.111 0.00 0.00 0.00 3.18
220 221 1.299976 GTTCCTGCTCGGGGTTCAT 59.700 57.895 0.00 0.00 0.00 2.57
221 222 1.026718 GTTCCTGCTCGGGGTTCATG 61.027 60.000 0.00 0.00 0.00 3.07
222 223 2.819984 TTCCTGCTCGGGGTTCATGC 62.820 60.000 0.00 0.00 0.00 4.06
223 224 2.825836 CTGCTCGGGGTTCATGCC 60.826 66.667 0.00 0.00 0.00 4.40
230 231 2.034999 GGGTTCATGCCCCGACAA 59.965 61.111 4.71 0.00 42.89 3.18
231 232 2.046285 GGGTTCATGCCCCGACAAG 61.046 63.158 4.71 0.00 42.89 3.16
232 233 2.700773 GGTTCATGCCCCGACAAGC 61.701 63.158 0.00 0.00 0.00 4.01
233 234 2.361104 TTCATGCCCCGACAAGCC 60.361 61.111 0.00 0.00 0.00 4.35
234 235 4.776322 TCATGCCCCGACAAGCCG 62.776 66.667 0.00 0.00 0.00 5.52
243 244 4.785453 GACAAGCCGCCAGGGAGG 62.785 72.222 3.43 3.43 38.47 4.30
245 246 4.479993 CAAGCCGCCAGGGAGGAG 62.480 72.222 12.67 0.00 41.22 3.69
246 247 4.722535 AAGCCGCCAGGGAGGAGA 62.723 66.667 12.67 0.00 40.01 3.71
249 250 2.364317 CCGCCAGGGAGGAGAGAA 60.364 66.667 1.29 0.00 40.01 2.87
250 251 1.990060 CCGCCAGGGAGGAGAGAAA 60.990 63.158 1.29 0.00 40.01 2.52
251 252 1.553690 CCGCCAGGGAGGAGAGAAAA 61.554 60.000 1.29 0.00 40.01 2.29
252 253 0.324943 CGCCAGGGAGGAGAGAAAAA 59.675 55.000 0.00 0.00 40.01 1.94
253 254 1.827681 GCCAGGGAGGAGAGAAAAAC 58.172 55.000 0.00 0.00 41.22 2.43
254 255 1.946283 GCCAGGGAGGAGAGAAAAACG 60.946 57.143 0.00 0.00 41.22 3.60
255 256 1.623811 CCAGGGAGGAGAGAAAAACGA 59.376 52.381 0.00 0.00 41.22 3.85
256 257 2.237392 CCAGGGAGGAGAGAAAAACGAT 59.763 50.000 0.00 0.00 41.22 3.73
257 258 3.526534 CAGGGAGGAGAGAAAAACGATC 58.473 50.000 0.00 0.00 0.00 3.69
258 259 2.502130 AGGGAGGAGAGAAAAACGATCC 59.498 50.000 0.00 0.00 0.00 3.36
259 260 2.541556 GGAGGAGAGAAAAACGATCCG 58.458 52.381 0.00 0.00 34.64 4.18
260 261 2.094130 GGAGGAGAGAAAAACGATCCGT 60.094 50.000 0.00 0.00 43.97 4.69
274 275 5.952526 ACGATCCGTTTATTTCCAAAGTT 57.047 34.783 0.00 0.00 36.35 2.66
276 277 7.068692 ACGATCCGTTTATTTCCAAAGTTAG 57.931 36.000 0.00 0.00 36.35 2.34
277 278 6.652062 ACGATCCGTTTATTTCCAAAGTTAGT 59.348 34.615 0.00 0.00 36.35 2.24
278 279 7.173735 ACGATCCGTTTATTTCCAAAGTTAGTT 59.826 33.333 0.00 0.00 36.35 2.24
279 280 8.658609 CGATCCGTTTATTTCCAAAGTTAGTTA 58.341 33.333 0.00 0.00 0.00 2.24
298 299 1.885049 ACCATGAGCACCTGGTCTAT 58.115 50.000 5.30 0.00 40.10 1.98
306 307 0.316772 CACCTGGTCTATCGTACGCG 60.317 60.000 11.24 3.53 39.92 6.01
348 349 0.742990 TACGTCCGTACCGTACCCTG 60.743 60.000 0.00 0.00 39.60 4.45
639 685 7.148623 CGACACTGTAAAGTTAAATCTTCTCCC 60.149 40.741 0.00 0.00 0.00 4.30
841 1378 3.880490 TGTTGTCGTTTTTGCTATGGAGT 59.120 39.130 0.00 0.00 0.00 3.85
860 1413 0.674581 TCTCGGCTGCACCAAAGATG 60.675 55.000 0.50 0.00 39.03 2.90
876 1431 5.065731 CCAAAGATGCTGACAGAATCTAACC 59.934 44.000 23.84 0.00 39.72 2.85
930 1501 3.440127 TGGAATTGCTAAAAGAAGGGGG 58.560 45.455 0.00 0.00 0.00 5.40
1017 1592 4.883585 GGAACCATGTCATGCTTTCATCTA 59.116 41.667 19.41 0.00 0.00 1.98
1129 1720 8.602472 TGGTATGGTGTGTATCTGCATATATA 57.398 34.615 0.00 0.00 0.00 0.86
1130 1721 9.212593 TGGTATGGTGTGTATCTGCATATATAT 57.787 33.333 0.00 0.00 0.00 0.86
1158 1749 3.567579 TTTCCTCTGGGCTTGGGCG 62.568 63.158 0.00 0.00 39.81 6.13
1252 2414 6.292923 TCTACTCTCTACATCCTTAGAGCAC 58.707 44.000 2.78 0.00 43.40 4.40
1396 2573 3.840991 AGGCATGAAATATGTGCATCCT 58.159 40.909 0.00 0.00 40.53 3.24
1737 3370 3.920197 TCCCTTGACTCCCCAGAATTTTA 59.080 43.478 0.00 0.00 0.00 1.52
1845 3479 0.179009 AGGGCTGCGATGCACATTAT 60.179 50.000 5.20 0.00 39.15 1.28
2331 3967 2.032808 CACTCGTCTTGATCGATCGCTA 60.033 50.000 20.03 7.59 36.73 4.26
2342 3978 1.546923 TCGATCGCTACTGGGTGAAAA 59.453 47.619 11.09 0.00 0.00 2.29
2379 4015 2.369860 TGGATCAAGCAACAGTGAGTCT 59.630 45.455 0.00 0.00 0.00 3.24
2797 5672 7.169982 CAGTTACACTGGAAACTCTCACTTTAG 59.830 40.741 0.00 0.00 42.35 1.85
2849 5724 7.029563 GTGAGAAAGAATTATTCCGCATTGTT 58.970 34.615 0.78 0.00 0.00 2.83
3051 6088 9.838339 ACATTTTCCTTGGTATCTATTCTGTAG 57.162 33.333 0.00 0.00 0.00 2.74
3126 6163 2.710377 CGGAGGACACCATGAATTCAA 58.290 47.619 13.09 0.00 0.00 2.69
3210 6247 2.416747 CTCAGAAGGCACAAATCGACA 58.583 47.619 0.00 0.00 0.00 4.35
3303 6340 6.013119 TGGATCTCTGGTACGTATGGAGTATA 60.013 42.308 16.30 4.60 0.00 1.47
3353 6422 7.066766 TGCAAAATTTGTTCTTTAATGTTGGCT 59.933 29.630 7.60 0.00 32.19 4.75
3354 6423 7.376601 GCAAAATTTGTTCTTTAATGTTGGCTG 59.623 33.333 7.60 0.00 32.19 4.85
3704 6900 4.138487 CCTACAAGGTGAGTATGGGAAC 57.862 50.000 0.00 0.00 0.00 3.62
3730 6927 6.597262 TTTATACTTGCACATACGACATGG 57.403 37.500 0.00 0.00 0.00 3.66
3877 7090 4.533815 AGTGTCTCTGTACCGGATCATTA 58.466 43.478 9.46 0.00 0.00 1.90
4703 8039 0.104855 TCATCTGCCACGGCTATGAC 59.895 55.000 17.43 0.00 42.51 3.06
4742 8080 2.027561 AGTATTTCACCGCTTGTAGCCA 60.028 45.455 0.00 0.00 38.18 4.75
4782 8138 9.617975 CTTACTCCACTGAAATTTTCTTCAATC 57.382 33.333 10.33 0.00 34.96 2.67
4783 8139 6.672147 ACTCCACTGAAATTTTCTTCAATCG 58.328 36.000 10.33 0.00 34.96 3.34
4843 8207 1.975680 TCCCAGTTAGTCCCAGTTGAC 59.024 52.381 0.00 0.00 35.43 3.18
4988 8357 1.802880 GCAGTGATATGGTTCTCGCGT 60.803 52.381 5.77 0.00 0.00 6.01
5064 8434 2.159531 GCAGTTGCAAATGTCTGCGATA 60.160 45.455 25.91 0.00 45.74 2.92
5070 8440 5.871465 TGCAAATGTCTGCGATAACTTAA 57.129 34.783 0.00 0.00 45.74 1.85
5207 8584 3.886505 TCCAATTCATAAACATACCGGGC 59.113 43.478 6.32 0.00 0.00 6.13
5229 8606 5.050159 GGCTTCGCAATTTCAGAAATTTGTT 60.050 36.000 17.12 0.00 38.97 2.83
5269 8646 4.670621 CACAACGTCAACAGCAAGAATAAC 59.329 41.667 0.00 0.00 0.00 1.89
5270 8647 4.219033 CAACGTCAACAGCAAGAATAACC 58.781 43.478 0.00 0.00 0.00 2.85
5271 8648 3.472652 ACGTCAACAGCAAGAATAACCA 58.527 40.909 0.00 0.00 0.00 3.67
5272 8649 4.072131 ACGTCAACAGCAAGAATAACCAT 58.928 39.130 0.00 0.00 0.00 3.55
5273 8650 5.242434 ACGTCAACAGCAAGAATAACCATA 58.758 37.500 0.00 0.00 0.00 2.74
5274 8651 5.703592 ACGTCAACAGCAAGAATAACCATAA 59.296 36.000 0.00 0.00 0.00 1.90
5275 8652 6.128282 ACGTCAACAGCAAGAATAACCATAAG 60.128 38.462 0.00 0.00 0.00 1.73
5277 8654 7.201644 CGTCAACAGCAAGAATAACCATAAGAT 60.202 37.037 0.00 0.00 0.00 2.40
5278 8655 8.462016 GTCAACAGCAAGAATAACCATAAGATT 58.538 33.333 0.00 0.00 0.00 2.40
5281 8658 8.579850 ACAGCAAGAATAACCATAAGATTGAA 57.420 30.769 0.00 0.00 0.00 2.69
5282 8659 8.462016 ACAGCAAGAATAACCATAAGATTGAAC 58.538 33.333 0.00 0.00 0.00 3.18
5283 8660 8.461222 CAGCAAGAATAACCATAAGATTGAACA 58.539 33.333 0.00 0.00 0.00 3.18
5382 9519 5.760253 CCACAAGATTGAACTAACAGTCTGT 59.240 40.000 0.00 0.00 37.05 3.41
5391 9528 7.462571 TGAACTAACAGTCTGTATAGCAAGA 57.537 36.000 5.77 0.00 0.00 3.02
5447 9584 4.194678 AGATGTATTCCCGAACCCTCTA 57.805 45.455 0.00 0.00 0.00 2.43
5488 9633 2.772568 TGACAAACATGCAAGGAACG 57.227 45.000 0.00 0.00 0.00 3.95
5489 9634 1.336440 TGACAAACATGCAAGGAACGG 59.664 47.619 0.00 0.00 0.00 4.44
5538 9686 9.924650 TCCTTCTAATCTTAGTTTGACTTGTAC 57.075 33.333 0.00 0.00 32.61 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.227908 TCTTCTATGACGTGTTCTTCAACC 58.772 41.667 0.00 0.00 0.00 3.77
1 2 5.164041 GCTCTTCTATGACGTGTTCTTCAAC 60.164 44.000 0.00 0.00 0.00 3.18
2 3 4.923871 GCTCTTCTATGACGTGTTCTTCAA 59.076 41.667 0.00 0.00 0.00 2.69
3 4 4.218635 AGCTCTTCTATGACGTGTTCTTCA 59.781 41.667 0.00 0.00 0.00 3.02
4 5 4.560819 CAGCTCTTCTATGACGTGTTCTTC 59.439 45.833 0.00 0.00 0.00 2.87
5 6 4.489810 CAGCTCTTCTATGACGTGTTCTT 58.510 43.478 0.00 0.00 0.00 2.52
6 7 3.119316 CCAGCTCTTCTATGACGTGTTCT 60.119 47.826 0.00 0.00 0.00 3.01
7 8 3.182967 CCAGCTCTTCTATGACGTGTTC 58.817 50.000 0.00 0.00 0.00 3.18
8 9 2.675317 GCCAGCTCTTCTATGACGTGTT 60.675 50.000 0.00 0.00 0.00 3.32
9 10 1.134965 GCCAGCTCTTCTATGACGTGT 60.135 52.381 0.00 0.00 0.00 4.49
10 11 1.135915 AGCCAGCTCTTCTATGACGTG 59.864 52.381 0.00 0.00 0.00 4.49
11 12 1.479709 AGCCAGCTCTTCTATGACGT 58.520 50.000 0.00 0.00 0.00 4.34
12 13 2.200067 CAAGCCAGCTCTTCTATGACG 58.800 52.381 0.00 0.00 0.00 4.35
13 14 3.258971 ACAAGCCAGCTCTTCTATGAC 57.741 47.619 0.00 0.00 0.00 3.06
14 15 3.988976 AACAAGCCAGCTCTTCTATGA 57.011 42.857 0.00 0.00 0.00 2.15
15 16 5.877012 TCTTTAACAAGCCAGCTCTTCTATG 59.123 40.000 0.00 0.00 0.00 2.23
16 17 6.054860 TCTTTAACAAGCCAGCTCTTCTAT 57.945 37.500 0.00 0.00 0.00 1.98
17 18 5.483685 TCTTTAACAAGCCAGCTCTTCTA 57.516 39.130 0.00 0.00 0.00 2.10
18 19 4.357918 TCTTTAACAAGCCAGCTCTTCT 57.642 40.909 0.00 0.00 0.00 2.85
19 20 4.517075 ACTTCTTTAACAAGCCAGCTCTTC 59.483 41.667 0.00 0.00 0.00 2.87
20 21 4.464947 ACTTCTTTAACAAGCCAGCTCTT 58.535 39.130 0.00 0.00 0.00 2.85
21 22 4.068599 GACTTCTTTAACAAGCCAGCTCT 58.931 43.478 0.00 0.00 0.00 4.09
22 23 4.068599 AGACTTCTTTAACAAGCCAGCTC 58.931 43.478 0.00 0.00 0.00 4.09
23 24 4.092116 AGACTTCTTTAACAAGCCAGCT 57.908 40.909 0.00 0.00 0.00 4.24
24 25 4.275936 TCAAGACTTCTTTAACAAGCCAGC 59.724 41.667 0.00 0.00 33.11 4.85
25 26 6.016777 ACATCAAGACTTCTTTAACAAGCCAG 60.017 38.462 0.00 0.00 33.11 4.85
26 27 5.827797 ACATCAAGACTTCTTTAACAAGCCA 59.172 36.000 0.00 0.00 33.11 4.75
27 28 6.145535 CACATCAAGACTTCTTTAACAAGCC 58.854 40.000 0.00 0.00 33.11 4.35
28 29 5.626955 GCACATCAAGACTTCTTTAACAAGC 59.373 40.000 0.00 0.00 33.11 4.01
29 30 6.854892 CAGCACATCAAGACTTCTTTAACAAG 59.145 38.462 0.00 0.00 33.11 3.16
30 31 6.238731 CCAGCACATCAAGACTTCTTTAACAA 60.239 38.462 0.00 0.00 33.11 2.83
31 32 5.239306 CCAGCACATCAAGACTTCTTTAACA 59.761 40.000 0.00 0.00 33.11 2.41
32 33 5.335191 CCCAGCACATCAAGACTTCTTTAAC 60.335 44.000 0.00 0.00 33.11 2.01
33 34 4.761739 CCCAGCACATCAAGACTTCTTTAA 59.238 41.667 0.00 0.00 33.11 1.52
34 35 4.202461 ACCCAGCACATCAAGACTTCTTTA 60.202 41.667 0.00 0.00 33.11 1.85
35 36 3.152341 CCCAGCACATCAAGACTTCTTT 58.848 45.455 0.00 0.00 33.11 2.52
36 37 2.107204 ACCCAGCACATCAAGACTTCTT 59.893 45.455 0.00 0.00 36.45 2.52
37 38 1.701847 ACCCAGCACATCAAGACTTCT 59.298 47.619 0.00 0.00 0.00 2.85
38 39 2.191128 ACCCAGCACATCAAGACTTC 57.809 50.000 0.00 0.00 0.00 3.01
39 40 2.508526 GAACCCAGCACATCAAGACTT 58.491 47.619 0.00 0.00 0.00 3.01
40 41 1.609061 CGAACCCAGCACATCAAGACT 60.609 52.381 0.00 0.00 0.00 3.24
41 42 0.798776 CGAACCCAGCACATCAAGAC 59.201 55.000 0.00 0.00 0.00 3.01
42 43 0.321564 CCGAACCCAGCACATCAAGA 60.322 55.000 0.00 0.00 0.00 3.02
43 44 1.926511 GCCGAACCCAGCACATCAAG 61.927 60.000 0.00 0.00 0.00 3.02
44 45 1.971167 GCCGAACCCAGCACATCAA 60.971 57.895 0.00 0.00 0.00 2.57
45 46 2.359850 GCCGAACCCAGCACATCA 60.360 61.111 0.00 0.00 0.00 3.07
46 47 3.134127 GGCCGAACCCAGCACATC 61.134 66.667 0.00 0.00 0.00 3.06
51 52 4.699522 AAGACGGCCGAACCCAGC 62.700 66.667 35.90 11.27 33.26 4.85
52 53 2.742372 CAAGACGGCCGAACCCAG 60.742 66.667 35.90 12.41 33.26 4.45
55 56 2.746277 ATGCAAGACGGCCGAACC 60.746 61.111 35.90 19.97 0.00 3.62
56 57 1.970917 CTGATGCAAGACGGCCGAAC 61.971 60.000 35.90 24.39 0.00 3.95
57 58 1.741401 CTGATGCAAGACGGCCGAA 60.741 57.895 35.90 10.04 0.00 4.30
58 59 2.125552 CTGATGCAAGACGGCCGA 60.126 61.111 35.90 8.69 0.00 5.54
59 60 2.125552 TCTGATGCAAGACGGCCG 60.126 61.111 26.86 26.86 0.00 6.13
60 61 3.490890 GTCTGATGCAAGACGGCC 58.509 61.111 2.87 0.00 37.44 6.13
64 65 2.410053 GTCTCAACGTCTGATGCAAGAC 59.590 50.000 8.27 8.27 42.68 3.01
65 66 2.610479 GGTCTCAACGTCTGATGCAAGA 60.610 50.000 0.00 0.00 32.14 3.02
66 67 1.728971 GGTCTCAACGTCTGATGCAAG 59.271 52.381 0.00 0.00 32.14 4.01
67 68 1.069978 TGGTCTCAACGTCTGATGCAA 59.930 47.619 0.00 0.00 32.14 4.08
68 69 0.678950 TGGTCTCAACGTCTGATGCA 59.321 50.000 0.00 0.00 32.14 3.96
69 70 1.354040 CTGGTCTCAACGTCTGATGC 58.646 55.000 0.00 0.00 32.14 3.91
70 71 1.273606 ACCTGGTCTCAACGTCTGATG 59.726 52.381 0.00 0.00 32.14 3.07
71 72 1.633774 ACCTGGTCTCAACGTCTGAT 58.366 50.000 0.00 0.00 32.14 2.90
72 73 1.068588 CAACCTGGTCTCAACGTCTGA 59.931 52.381 0.00 0.00 0.00 3.27
73 74 1.202533 ACAACCTGGTCTCAACGTCTG 60.203 52.381 0.00 0.00 0.00 3.51
74 75 1.068741 GACAACCTGGTCTCAACGTCT 59.931 52.381 0.00 0.00 34.92 4.18
75 76 1.499049 GACAACCTGGTCTCAACGTC 58.501 55.000 0.00 0.00 34.92 4.34
76 77 0.249322 CGACAACCTGGTCTCAACGT 60.249 55.000 0.00 0.00 35.63 3.99
77 78 0.249322 ACGACAACCTGGTCTCAACG 60.249 55.000 0.00 5.17 35.63 4.10
78 79 1.865340 GAACGACAACCTGGTCTCAAC 59.135 52.381 0.00 0.00 35.63 3.18
79 80 1.760613 AGAACGACAACCTGGTCTCAA 59.239 47.619 0.00 0.00 35.63 3.02
80 81 1.068588 CAGAACGACAACCTGGTCTCA 59.931 52.381 0.00 0.00 35.63 3.27
81 82 1.340248 TCAGAACGACAACCTGGTCTC 59.660 52.381 0.00 0.00 35.63 3.36
82 83 1.068741 GTCAGAACGACAACCTGGTCT 59.931 52.381 0.00 0.00 44.69 3.85
83 84 1.499049 GTCAGAACGACAACCTGGTC 58.501 55.000 0.00 0.00 44.69 4.02
84 85 3.680842 GTCAGAACGACAACCTGGT 57.319 52.632 0.00 0.00 44.69 4.00
92 93 2.611518 CCTCAATCTGGTCAGAACGAC 58.388 52.381 4.67 0.00 44.57 4.34
93 94 1.550524 CCCTCAATCTGGTCAGAACGA 59.449 52.381 4.67 4.10 41.36 3.85
94 95 1.550524 TCCCTCAATCTGGTCAGAACG 59.449 52.381 4.67 0.00 41.36 3.95
95 96 2.569404 AGTCCCTCAATCTGGTCAGAAC 59.431 50.000 4.67 0.00 41.36 3.01
96 97 2.907892 AGTCCCTCAATCTGGTCAGAA 58.092 47.619 4.67 0.00 41.36 3.02
97 98 2.568956 CAAGTCCCTCAATCTGGTCAGA 59.431 50.000 2.93 2.93 42.37 3.27
98 99 2.355513 CCAAGTCCCTCAATCTGGTCAG 60.356 54.545 0.00 0.00 0.00 3.51
99 100 1.630369 CCAAGTCCCTCAATCTGGTCA 59.370 52.381 0.00 0.00 0.00 4.02
100 101 1.680249 GCCAAGTCCCTCAATCTGGTC 60.680 57.143 0.00 0.00 0.00 4.02
101 102 0.329596 GCCAAGTCCCTCAATCTGGT 59.670 55.000 0.00 0.00 0.00 4.00
102 103 0.394899 GGCCAAGTCCCTCAATCTGG 60.395 60.000 0.00 0.00 0.00 3.86
103 104 0.745845 CGGCCAAGTCCCTCAATCTG 60.746 60.000 2.24 0.00 0.00 2.90
104 105 1.604378 CGGCCAAGTCCCTCAATCT 59.396 57.895 2.24 0.00 0.00 2.40
105 106 1.452108 CCGGCCAAGTCCCTCAATC 60.452 63.158 2.24 0.00 0.00 2.67
106 107 2.677228 CCGGCCAAGTCCCTCAAT 59.323 61.111 2.24 0.00 0.00 2.57
107 108 3.646715 CCCGGCCAAGTCCCTCAA 61.647 66.667 2.24 0.00 0.00 3.02
124 125 3.969250 TTTGATCGGGTCGCCCAGC 62.969 63.158 14.17 5.91 45.83 4.85
125 126 1.153168 ATTTGATCGGGTCGCCCAG 60.153 57.895 14.17 0.00 45.83 4.45
126 127 1.451207 CATTTGATCGGGTCGCCCA 60.451 57.895 14.17 3.40 45.83 5.36
127 128 2.834618 GCATTTGATCGGGTCGCCC 61.835 63.158 4.96 4.96 41.09 6.13
128 129 1.653094 TTGCATTTGATCGGGTCGCC 61.653 55.000 0.00 0.00 0.00 5.54
129 130 0.248215 CTTGCATTTGATCGGGTCGC 60.248 55.000 0.00 0.00 0.00 5.19
130 131 0.248215 GCTTGCATTTGATCGGGTCG 60.248 55.000 0.00 0.00 0.00 4.79
131 132 0.101219 GGCTTGCATTTGATCGGGTC 59.899 55.000 0.00 0.00 0.00 4.46
132 133 1.656818 CGGCTTGCATTTGATCGGGT 61.657 55.000 0.00 0.00 0.00 5.28
133 134 1.064621 CGGCTTGCATTTGATCGGG 59.935 57.895 0.00 0.00 0.00 5.14
134 135 1.064621 CCGGCTTGCATTTGATCGG 59.935 57.895 0.00 0.00 0.00 4.18
135 136 0.664761 ATCCGGCTTGCATTTGATCG 59.335 50.000 0.00 0.00 0.00 3.69
136 137 2.099592 TCAATCCGGCTTGCATTTGATC 59.900 45.455 13.23 0.00 0.00 2.92
137 138 2.100252 CTCAATCCGGCTTGCATTTGAT 59.900 45.455 13.23 0.00 0.00 2.57
138 139 1.473677 CTCAATCCGGCTTGCATTTGA 59.526 47.619 13.23 4.87 0.00 2.69
139 140 1.473677 TCTCAATCCGGCTTGCATTTG 59.526 47.619 13.23 1.72 0.00 2.32
140 141 1.838112 TCTCAATCCGGCTTGCATTT 58.162 45.000 13.23 0.00 0.00 2.32
141 142 1.747355 CTTCTCAATCCGGCTTGCATT 59.253 47.619 13.23 0.00 0.00 3.56
142 143 1.386533 CTTCTCAATCCGGCTTGCAT 58.613 50.000 13.23 0.00 0.00 3.96
143 144 1.308069 GCTTCTCAATCCGGCTTGCA 61.308 55.000 13.23 0.00 0.00 4.08
144 145 1.431036 GCTTCTCAATCCGGCTTGC 59.569 57.895 13.23 0.00 0.00 4.01
145 146 0.740868 TCGCTTCTCAATCCGGCTTG 60.741 55.000 11.87 11.87 0.00 4.01
146 147 0.179000 ATCGCTTCTCAATCCGGCTT 59.821 50.000 0.00 0.00 0.00 4.35
147 148 0.531532 CATCGCTTCTCAATCCGGCT 60.532 55.000 0.00 0.00 0.00 5.52
148 149 1.937391 CATCGCTTCTCAATCCGGC 59.063 57.895 0.00 0.00 0.00 6.13
149 150 0.531532 AGCATCGCTTCTCAATCCGG 60.532 55.000 0.00 0.00 33.89 5.14
150 151 2.140065 TAGCATCGCTTCTCAATCCG 57.860 50.000 0.00 0.00 40.44 4.18
151 152 2.222911 GCTTAGCATCGCTTCTCAATCC 59.777 50.000 0.00 0.00 40.44 3.01
152 153 2.222911 GGCTTAGCATCGCTTCTCAATC 59.777 50.000 6.53 0.00 40.44 2.67
153 154 2.216898 GGCTTAGCATCGCTTCTCAAT 58.783 47.619 6.53 0.00 40.44 2.57
154 155 1.656652 GGCTTAGCATCGCTTCTCAA 58.343 50.000 6.53 0.00 40.44 3.02
155 156 0.179073 GGGCTTAGCATCGCTTCTCA 60.179 55.000 6.53 0.00 40.44 3.27
156 157 1.218230 CGGGCTTAGCATCGCTTCTC 61.218 60.000 6.53 0.00 40.44 2.87
157 158 1.227380 CGGGCTTAGCATCGCTTCT 60.227 57.895 6.53 0.00 40.44 2.85
158 159 0.601311 ATCGGGCTTAGCATCGCTTC 60.601 55.000 6.53 0.00 40.44 3.86
159 160 0.882042 CATCGGGCTTAGCATCGCTT 60.882 55.000 6.53 0.00 40.44 4.68
160 161 1.301244 CATCGGGCTTAGCATCGCT 60.301 57.895 6.53 0.00 43.41 4.93
161 162 1.160329 AACATCGGGCTTAGCATCGC 61.160 55.000 6.53 0.00 0.00 4.58
162 163 1.299541 AAACATCGGGCTTAGCATCG 58.700 50.000 6.53 9.62 0.00 3.84
163 164 3.128589 TCAAAAACATCGGGCTTAGCATC 59.871 43.478 6.53 0.00 0.00 3.91
164 165 3.088532 TCAAAAACATCGGGCTTAGCAT 58.911 40.909 6.53 0.00 0.00 3.79
165 166 2.509569 TCAAAAACATCGGGCTTAGCA 58.490 42.857 6.53 0.00 0.00 3.49
166 167 3.569250 TTCAAAAACATCGGGCTTAGC 57.431 42.857 0.00 0.00 0.00 3.09
167 168 4.385748 GCTTTTCAAAAACATCGGGCTTAG 59.614 41.667 0.00 0.00 0.00 2.18
168 169 4.202161 TGCTTTTCAAAAACATCGGGCTTA 60.202 37.500 0.00 0.00 0.00 3.09
169 170 3.130633 GCTTTTCAAAAACATCGGGCTT 58.869 40.909 0.00 0.00 0.00 4.35
170 171 2.102252 TGCTTTTCAAAAACATCGGGCT 59.898 40.909 0.00 0.00 0.00 5.19
171 172 2.478831 TGCTTTTCAAAAACATCGGGC 58.521 42.857 0.00 0.00 0.00 6.13
172 173 4.386652 CAGATGCTTTTCAAAAACATCGGG 59.613 41.667 16.87 11.48 39.11 5.14
173 174 5.221880 TCAGATGCTTTTCAAAAACATCGG 58.778 37.500 16.87 16.46 39.11 4.18
174 175 5.916883 ACTCAGATGCTTTTCAAAAACATCG 59.083 36.000 16.87 13.01 39.11 3.84
175 176 7.095899 GGAACTCAGATGCTTTTCAAAAACATC 60.096 37.037 15.65 15.65 37.07 3.06
176 177 6.703165 GGAACTCAGATGCTTTTCAAAAACAT 59.297 34.615 0.00 0.00 0.00 2.71
177 178 6.042143 GGAACTCAGATGCTTTTCAAAAACA 58.958 36.000 0.00 0.00 0.00 2.83
178 179 5.173854 CGGAACTCAGATGCTTTTCAAAAAC 59.826 40.000 0.00 0.00 0.00 2.43
179 180 5.163561 ACGGAACTCAGATGCTTTTCAAAAA 60.164 36.000 0.00 0.00 0.00 1.94
180 181 4.338118 ACGGAACTCAGATGCTTTTCAAAA 59.662 37.500 0.00 0.00 0.00 2.44
181 182 3.882888 ACGGAACTCAGATGCTTTTCAAA 59.117 39.130 0.00 0.00 0.00 2.69
182 183 3.476552 ACGGAACTCAGATGCTTTTCAA 58.523 40.909 0.00 0.00 0.00 2.69
183 184 3.126001 ACGGAACTCAGATGCTTTTCA 57.874 42.857 0.00 0.00 0.00 2.69
184 185 3.120165 GGAACGGAACTCAGATGCTTTTC 60.120 47.826 0.00 0.00 0.00 2.29
185 186 2.814336 GGAACGGAACTCAGATGCTTTT 59.186 45.455 0.00 0.00 0.00 2.27
186 187 2.039084 AGGAACGGAACTCAGATGCTTT 59.961 45.455 0.00 0.00 0.00 3.51
187 188 1.625818 AGGAACGGAACTCAGATGCTT 59.374 47.619 0.00 0.00 0.00 3.91
188 189 1.066573 CAGGAACGGAACTCAGATGCT 60.067 52.381 0.00 0.00 0.00 3.79
189 190 1.363744 CAGGAACGGAACTCAGATGC 58.636 55.000 0.00 0.00 0.00 3.91
190 191 1.066573 AGCAGGAACGGAACTCAGATG 60.067 52.381 0.00 0.00 0.00 2.90
191 192 1.205893 GAGCAGGAACGGAACTCAGAT 59.794 52.381 0.00 0.00 0.00 2.90
192 193 0.603569 GAGCAGGAACGGAACTCAGA 59.396 55.000 0.00 0.00 0.00 3.27
193 194 0.734253 CGAGCAGGAACGGAACTCAG 60.734 60.000 0.00 0.00 0.00 3.35
194 195 1.289066 CGAGCAGGAACGGAACTCA 59.711 57.895 0.00 0.00 0.00 3.41
195 196 4.170723 CGAGCAGGAACGGAACTC 57.829 61.111 0.00 0.00 0.00 3.01
201 202 2.434359 GAACCCCGAGCAGGAACG 60.434 66.667 0.00 0.00 45.00 3.95
202 203 1.026718 CATGAACCCCGAGCAGGAAC 61.027 60.000 0.00 0.00 45.00 3.62
203 204 1.299648 CATGAACCCCGAGCAGGAA 59.700 57.895 0.00 0.00 45.00 3.36
204 205 2.989639 CATGAACCCCGAGCAGGA 59.010 61.111 0.00 0.00 45.00 3.86
205 206 2.825836 GCATGAACCCCGAGCAGG 60.826 66.667 0.00 0.00 40.63 4.85
206 207 2.825836 GGCATGAACCCCGAGCAG 60.826 66.667 0.00 0.00 0.00 4.24
207 208 4.424711 GGGCATGAACCCCGAGCA 62.425 66.667 0.00 0.00 45.00 4.26
214 215 2.700773 GCTTGTCGGGGCATGAACC 61.701 63.158 0.00 0.00 0.00 3.62
215 216 2.700773 GGCTTGTCGGGGCATGAAC 61.701 63.158 0.00 0.00 0.00 3.18
216 217 2.361104 GGCTTGTCGGGGCATGAA 60.361 61.111 0.00 0.00 0.00 2.57
217 218 4.776322 CGGCTTGTCGGGGCATGA 62.776 66.667 0.00 0.00 0.00 3.07
226 227 4.785453 CCTCCCTGGCGGCTTGTC 62.785 72.222 11.43 0.00 0.00 3.18
228 229 4.479993 CTCCTCCCTGGCGGCTTG 62.480 72.222 11.43 2.82 35.26 4.01
229 230 4.722535 TCTCCTCCCTGGCGGCTT 62.723 66.667 11.43 0.00 35.26 4.35
232 233 1.553690 TTTTCTCTCCTCCCTGGCGG 61.554 60.000 0.00 0.00 35.26 6.13
233 234 0.324943 TTTTTCTCTCCTCCCTGGCG 59.675 55.000 0.00 0.00 35.26 5.69
234 235 1.827681 GTTTTTCTCTCCTCCCTGGC 58.172 55.000 0.00 0.00 35.26 4.85
235 236 1.623811 TCGTTTTTCTCTCCTCCCTGG 59.376 52.381 0.00 0.00 37.10 4.45
236 237 3.526534 GATCGTTTTTCTCTCCTCCCTG 58.473 50.000 0.00 0.00 0.00 4.45
237 238 2.502130 GGATCGTTTTTCTCTCCTCCCT 59.498 50.000 0.00 0.00 0.00 4.20
238 239 2.738964 CGGATCGTTTTTCTCTCCTCCC 60.739 54.545 0.00 0.00 0.00 4.30
239 240 2.094130 ACGGATCGTTTTTCTCTCCTCC 60.094 50.000 0.00 0.00 36.35 4.30
240 241 3.233684 ACGGATCGTTTTTCTCTCCTC 57.766 47.619 0.00 0.00 36.35 3.71
252 253 5.952526 AACTTTGGAAATAAACGGATCGT 57.047 34.783 0.00 0.00 43.97 3.73
253 254 7.068692 ACTAACTTTGGAAATAAACGGATCG 57.931 36.000 0.00 0.00 0.00 3.69
254 255 9.764870 GTAACTAACTTTGGAAATAAACGGATC 57.235 33.333 0.00 0.00 0.00 3.36
255 256 8.733458 GGTAACTAACTTTGGAAATAAACGGAT 58.267 33.333 0.00 0.00 0.00 4.18
256 257 7.718753 TGGTAACTAACTTTGGAAATAAACGGA 59.281 33.333 0.00 0.00 37.61 4.69
257 258 7.873910 TGGTAACTAACTTTGGAAATAAACGG 58.126 34.615 0.00 0.00 37.61 4.44
258 259 9.337091 CATGGTAACTAACTTTGGAAATAAACG 57.663 33.333 0.00 0.00 37.61 3.60
261 262 8.736244 GCTCATGGTAACTAACTTTGGAAATAA 58.264 33.333 0.00 0.00 37.61 1.40
262 263 7.885922 TGCTCATGGTAACTAACTTTGGAAATA 59.114 33.333 0.00 0.00 37.61 1.40
263 264 6.719370 TGCTCATGGTAACTAACTTTGGAAAT 59.281 34.615 0.00 0.00 37.61 2.17
264 265 6.016610 GTGCTCATGGTAACTAACTTTGGAAA 60.017 38.462 0.00 0.00 37.61 3.13
265 266 5.472137 GTGCTCATGGTAACTAACTTTGGAA 59.528 40.000 0.00 0.00 37.61 3.53
266 267 5.001232 GTGCTCATGGTAACTAACTTTGGA 58.999 41.667 0.00 0.00 37.61 3.53
267 268 4.156008 GGTGCTCATGGTAACTAACTTTGG 59.844 45.833 0.00 0.00 37.61 3.28
268 269 5.003804 AGGTGCTCATGGTAACTAACTTTG 58.996 41.667 0.00 0.00 37.61 2.77
269 270 5.003804 CAGGTGCTCATGGTAACTAACTTT 58.996 41.667 0.00 0.00 37.61 2.66
270 271 4.565652 CCAGGTGCTCATGGTAACTAACTT 60.566 45.833 11.20 0.00 40.22 2.66
271 272 3.055094 CCAGGTGCTCATGGTAACTAACT 60.055 47.826 11.20 0.00 40.22 2.24
272 273 3.270877 CCAGGTGCTCATGGTAACTAAC 58.729 50.000 11.20 0.00 40.22 2.34
273 274 3.627395 CCAGGTGCTCATGGTAACTAA 57.373 47.619 11.20 0.00 40.22 2.24
306 307 2.019984 AGGAGTATGGTCGGTTCGTAC 58.980 52.381 0.00 0.00 0.00 3.67
348 349 3.009115 TGCTCCAGGGCCCTGTAC 61.009 66.667 42.69 32.19 42.15 2.90
522 567 2.005451 CTTTCAGGGATGCTCTCGTTG 58.995 52.381 0.00 0.00 0.00 4.10
575 620 0.322975 GGACACCACTCATCTGCTGT 59.677 55.000 0.00 0.00 0.00 4.40
592 637 1.550327 ATCGAGTGAACAGAGCAGGA 58.450 50.000 0.00 0.00 0.00 3.86
639 685 9.092876 GTTCTATCTGGAACACTATGAAGAAAG 57.907 37.037 1.99 0.00 43.40 2.62
759 850 0.312102 GCTTCAGTGCCACTGTTTCC 59.688 55.000 23.35 8.01 46.03 3.13
841 1378 0.674581 CATCTTTGGTGCAGCCGAGA 60.675 55.000 14.36 16.07 41.21 4.04
860 1413 5.331876 AGTACAGGTTAGATTCTGTCAGC 57.668 43.478 0.00 0.00 42.51 4.26
876 1431 2.289072 CCCAGTGAGTGTTGGAGTACAG 60.289 54.545 0.00 0.00 36.55 2.74
1129 1720 2.091665 CCCAGAGGAAAAGGGCATACAT 60.092 50.000 0.00 0.00 35.44 2.29
1130 1721 1.284785 CCCAGAGGAAAAGGGCATACA 59.715 52.381 0.00 0.00 35.44 2.29
1143 1734 4.785453 GACGCCCAAGCCCAGAGG 62.785 72.222 0.00 0.00 34.57 3.69
1158 1749 1.503542 CAGCCAGAATGCCAACGAC 59.496 57.895 0.00 0.00 31.97 4.34
1252 2414 3.631145 TCTTAAGCTGCAGCAAGTTTG 57.369 42.857 38.24 22.19 45.16 2.93
1448 2640 6.706716 AGCCAGTACTTCTTTCAGAGTAAAAC 59.293 38.462 0.00 0.00 0.00 2.43
1737 3370 2.479389 CGGCGCCATGACAAATGTAATT 60.479 45.455 28.98 0.00 38.98 1.40
2331 3967 0.958822 GGCATCGTTTTTCACCCAGT 59.041 50.000 0.00 0.00 0.00 4.00
2342 3978 0.327924 TCCACCATTCTGGCATCGTT 59.672 50.000 0.00 0.00 42.67 3.85
2379 4015 1.446099 GTGCTCGCACCTTCGATGA 60.446 57.895 10.82 0.00 40.79 2.92
2797 5672 5.823045 CCACTTGGGTCAAATATTAGGACTC 59.177 44.000 15.71 13.62 32.63 3.36
2849 5724 6.860790 TGTACATTAGGAGTGTGGTTCATA 57.139 37.500 0.00 0.00 0.00 2.15
3051 6088 6.198029 CGATCATCAAGACATCAGTGAGTAAC 59.802 42.308 0.00 0.00 0.00 2.50
3126 6163 4.035102 GGTTTCTGGAGGGCCGCT 62.035 66.667 7.35 0.00 36.79 5.52
3210 6247 5.010012 CAGGCCTAATTTTCTTCACAAGTGT 59.990 40.000 3.98 0.00 0.00 3.55
3225 6262 8.782137 ATGTAAAATGGAATTACAGGCCTAAT 57.218 30.769 3.98 0.00 44.05 1.73
3303 6340 4.947388 GGAGTCTCACTGAATCTGTAGAGT 59.053 45.833 1.47 10.56 39.49 3.24
3431 6627 2.626743 GGCAGCATAATCCTTGCAGATT 59.373 45.455 6.45 6.45 42.62 2.40
3703 6899 7.603963 TGTCGTATGTGCAAGTATAAAATGT 57.396 32.000 0.00 0.00 0.00 2.71
3704 6900 7.587392 CCATGTCGTATGTGCAAGTATAAAATG 59.413 37.037 0.00 0.00 0.00 2.32
3705 6901 7.497579 TCCATGTCGTATGTGCAAGTATAAAAT 59.502 33.333 0.00 0.00 0.00 1.82
3706 6902 6.819146 TCCATGTCGTATGTGCAAGTATAAAA 59.181 34.615 0.00 0.00 0.00 1.52
3714 6911 4.457257 TGATTTTCCATGTCGTATGTGCAA 59.543 37.500 0.00 0.00 0.00 4.08
3730 6927 3.181506 GGTGATCCTGAGCGTTGATTTTC 60.182 47.826 0.00 0.00 0.00 2.29
4040 7253 0.539438 CTCCTCTAGCTCCTCGCCAT 60.539 60.000 0.00 0.00 40.39 4.40
4612 7863 5.220710 ACACAAGCTACTCTCAGTTCATT 57.779 39.130 0.00 0.00 0.00 2.57
4703 8039 2.442413 ACTCCTCTCTCGGTTCTGAAG 58.558 52.381 0.00 0.00 0.00 3.02
4742 8080 5.477291 AGTGGAGTAAGTGCTATATGCGTAT 59.523 40.000 3.47 3.47 46.63 3.06
4820 8184 3.655777 TCAACTGGGACTAACTGGGAATT 59.344 43.478 0.00 0.00 0.00 2.17
4843 8207 3.313526 GCCCTTGAGTAACATATGCACAG 59.686 47.826 1.58 0.00 0.00 3.66
4976 8345 1.153745 GAGCAGACGCGAGAACCAT 60.154 57.895 15.93 0.00 45.49 3.55
4988 8357 4.318332 CACAACAGAATAACCAGAGCAGA 58.682 43.478 0.00 0.00 0.00 4.26
5064 8434 1.005215 AGGCAGGCATCAGCTTAAGTT 59.995 47.619 4.02 0.00 41.70 2.66
5070 8440 2.590645 CAGAGGCAGGCATCAGCT 59.409 61.111 8.73 0.00 41.70 4.24
5207 8584 7.382218 ACCTAACAAATTTCTGAAATTGCGAAG 59.618 33.333 24.51 18.87 40.05 3.79
5229 8606 4.156922 CGTTGTGATTGGCCATTTTACCTA 59.843 41.667 6.09 0.00 0.00 3.08
5391 9528 5.489792 TTGAATGTCCACTAGAAGAGCTT 57.510 39.130 0.00 0.00 0.00 3.74
5447 9584 6.543831 GTCAAACATACATCTGCTTAGGGATT 59.456 38.462 0.00 0.00 0.00 3.01
5480 9625 8.118976 TCTTACTATATGTATCCCGTTCCTTG 57.881 38.462 0.00 0.00 0.00 3.61
5527 9672 7.722363 TGTGATGTTCTCTAGTACAAGTCAAA 58.278 34.615 0.00 0.00 0.00 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.