Multiple sequence alignment - TraesCS5D01G078100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G078100 chr5D 100.000 4787 0 0 1 4787 78009371 78014157 0.000000e+00 8841.0
1 TraesCS5D01G078100 chr5D 88.526 2083 203 17 990 3065 78052438 78054491 0.000000e+00 2490.0
2 TraesCS5D01G078100 chr5D 90.866 1062 90 6 1615 2670 77737708 77738768 0.000000e+00 1417.0
3 TraesCS5D01G078100 chr5D 83.561 1247 158 21 2673 3884 77738892 77740126 0.000000e+00 1123.0
4 TraesCS5D01G078100 chr5D 89.912 456 43 3 1106 1560 77737254 77737707 6.900000e-163 584.0
5 TraesCS5D01G078100 chr5D 80.518 734 119 16 3104 3816 78054557 78055287 4.210000e-150 542.0
6 TraesCS5D01G078100 chr5D 83.886 422 54 8 96 512 78051897 78052309 1.620000e-104 390.0
7 TraesCS5D01G078100 chr5D 95.000 80 4 0 912 991 78052332 78052411 5.030000e-25 126.0
8 TraesCS5D01G078100 chr5D 96.875 32 1 0 297 328 77736602 77736633 2.000000e-03 54.7
9 TraesCS5D01G078100 chr5B 95.658 3040 120 6 912 3941 87650390 87653427 0.000000e+00 4872.0
10 TraesCS5D01G078100 chr5B 88.569 2082 208 12 990 3065 87764680 87766737 0.000000e+00 2499.0
11 TraesCS5D01G078100 chr5B 90.177 1303 124 3 990 2291 87968506 87969805 0.000000e+00 1694.0
12 TraesCS5D01G078100 chr5B 90.807 892 76 5 1782 2670 87292932 87293820 0.000000e+00 1188.0
13 TraesCS5D01G078100 chr5B 83.547 1246 165 21 2676 3884 87293948 87295190 0.000000e+00 1129.0
14 TraesCS5D01G078100 chr5B 86.990 784 91 5 2293 3065 87969972 87970755 0.000000e+00 872.0
15 TraesCS5D01G078100 chr5B 90.330 455 43 1 1106 1560 87291077 87291530 3.190000e-166 595.0
16 TraesCS5D01G078100 chr5B 76.604 1013 184 37 3104 4084 87766804 87767795 4.270000e-140 508.0
17 TraesCS5D01G078100 chr5B 93.333 285 14 1 236 520 87650096 87650375 2.660000e-112 416.0
18 TraesCS5D01G078100 chr5B 83.412 422 55 9 96 512 87967966 87968377 1.260000e-100 377.0
19 TraesCS5D01G078100 chr5B 82.532 395 46 6 56 450 87290502 87290873 4.620000e-85 326.0
20 TraesCS5D01G078100 chr5B 98.658 149 2 0 56 204 87649953 87650101 1.020000e-66 265.0
21 TraesCS5D01G078100 chr5B 88.125 160 12 3 4392 4547 87653692 87653848 2.940000e-42 183.0
22 TraesCS5D01G078100 chr5B 93.478 92 6 0 4218 4309 87653561 87653652 2.320000e-28 137.0
23 TraesCS5D01G078100 chr5B 96.250 80 3 0 912 991 87968400 87968479 1.080000e-26 132.0
24 TraesCS5D01G078100 chr5B 86.667 75 10 0 3647 3721 87240999 87241073 3.070000e-12 84.2
25 TraesCS5D01G078100 chr5B 91.111 45 3 1 4302 4346 87653657 87653700 5.170000e-05 60.2
26 TraesCS5D01G078100 chr5A 95.945 2170 77 7 912 3075 74590123 74592287 0.000000e+00 3509.0
27 TraesCS5D01G078100 chr5A 88.106 2085 211 18 990 3063 74672098 74674156 0.000000e+00 2442.0
28 TraesCS5D01G078100 chr5A 92.993 1213 71 6 3104 4306 74592344 74593552 0.000000e+00 1757.0
29 TraesCS5D01G078100 chr5A 89.727 1061 101 7 1615 2670 74496621 74497678 0.000000e+00 1349.0
30 TraesCS5D01G078100 chr5A 84.375 1248 148 24 2676 3884 74497805 74499044 0.000000e+00 1181.0
31 TraesCS5D01G078100 chr5A 95.385 520 19 2 1 520 74589594 74590108 0.000000e+00 822.0
32 TraesCS5D01G078100 chr5A 90.110 455 44 1 1106 1560 74496167 74496620 1.480000e-164 590.0
33 TraesCS5D01G078100 chr5A 94.142 239 13 1 4398 4635 74593554 74593792 3.520000e-96 363.0
34 TraesCS5D01G078100 chr5A 94.040 151 9 0 4637 4787 74593910 74594060 3.730000e-56 230.0
35 TraesCS5D01G078100 chr5A 86.154 65 9 0 3655 3719 74488110 74488174 2.390000e-08 71.3
36 TraesCS5D01G078100 chr5A 84.746 59 7 2 297 353 74495512 74495570 1.860000e-04 58.4
37 TraesCS5D01G078100 chr4A 92.537 402 19 4 520 911 108369011 108368611 2.500000e-157 566.0
38 TraesCS5D01G078100 chr4A 84.615 65 8 2 3656 3719 665445534 665445471 4.000000e-06 63.9
39 TraesCS5D01G078100 chr1A 92.519 401 20 3 521 911 582217805 582217405 2.500000e-157 566.0
40 TraesCS5D01G078100 chr7D 93.130 393 13 5 521 911 426545270 426544890 8.990000e-157 564.0
41 TraesCS5D01G078100 chr2A 92.138 407 19 6 521 915 261666079 261665674 3.230000e-156 562.0
42 TraesCS5D01G078100 chr3A 92.060 403 20 5 521 911 34039056 34039458 1.500000e-154 556.0
43 TraesCS5D01G078100 chr3A 87.500 392 40 4 521 911 748360150 748359767 1.220000e-120 444.0
44 TraesCS5D01G078100 chr3A 93.684 95 5 1 824 917 44313518 44313424 1.800000e-29 141.0
45 TraesCS5D01G078100 chr1B 91.837 392 25 4 521 911 593054212 593054597 1.520000e-149 540.0
46 TraesCS5D01G078100 chr1B 84.712 399 38 11 518 914 171104819 171104442 1.260000e-100 377.0
47 TraesCS5D01G078100 chr7B 91.349 393 30 3 521 912 313771457 313771068 7.050000e-148 534.0
48 TraesCS5D01G078100 chr2B 90.415 386 26 6 530 911 698302085 698301707 9.250000e-137 497.0
49 TraesCS5D01G078100 chrUn 85.714 147 10 5 767 912 126721657 126721521 1.390000e-30 145.0
50 TraesCS5D01G078100 chrUn 91.139 79 7 0 913 991 45881515 45881593 1.820000e-19 108.0
51 TraesCS5D01G078100 chr1D 92.593 81 6 0 911 991 16107153 16107073 3.030000e-22 117.0
52 TraesCS5D01G078100 chr1D 100.000 31 0 0 4714 4744 10673908 10673878 1.860000e-04 58.4
53 TraesCS5D01G078100 chr2D 95.122 41 1 1 4175 4215 649517443 649517482 4.000000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G078100 chr5D 78009371 78014157 4786 False 8841.000000 8841 100.000000 1 4787 1 chr5D.!!$F1 4786
1 TraesCS5D01G078100 chr5D 78051897 78055287 3390 False 887.000000 2490 86.982500 96 3816 4 chr5D.!!$F3 3720
2 TraesCS5D01G078100 chr5D 77736602 77740126 3524 False 794.675000 1417 90.303500 297 3884 4 chr5D.!!$F2 3587
3 TraesCS5D01G078100 chr5B 87764680 87767795 3115 False 1503.500000 2499 82.586500 990 4084 2 chr5B.!!$F4 3094
4 TraesCS5D01G078100 chr5B 87649953 87653848 3895 False 988.866667 4872 93.393833 56 4547 6 chr5B.!!$F3 4491
5 TraesCS5D01G078100 chr5B 87290502 87295190 4688 False 809.500000 1188 86.804000 56 3884 4 chr5B.!!$F2 3828
6 TraesCS5D01G078100 chr5B 87967966 87970755 2789 False 768.750000 1694 89.207250 96 3065 4 chr5B.!!$F5 2969
7 TraesCS5D01G078100 chr5A 74672098 74674156 2058 False 2442.000000 2442 88.106000 990 3063 1 chr5A.!!$F2 2073
8 TraesCS5D01G078100 chr5A 74589594 74594060 4466 False 1336.200000 3509 94.501000 1 4787 5 chr5A.!!$F4 4786
9 TraesCS5D01G078100 chr5A 74495512 74499044 3532 False 794.600000 1349 87.239500 297 3884 4 chr5A.!!$F3 3587

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
885 956 0.107165 GTTCATGAGGGTGTAGGGGC 60.107 60.000 0.00 0.00 0.00 5.80 F
1086 1185 0.392193 AAAGATGTGAGGGCTGCGAG 60.392 55.000 0.00 0.00 0.00 5.03 F
1158 1257 1.270732 TGCATGGTTGGCAATTTCCAC 60.271 47.619 9.92 0.62 38.54 4.02 F
2436 3936 1.279271 GGGGTGCAATCTGACTACAGT 59.721 52.381 0.00 0.00 43.81 3.55 F
3343 5035 0.738389 CAATCCCGTGTACATTGCCC 59.262 55.000 0.00 0.00 0.00 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2453 3953 0.814010 ACTTTCCTCACAAGCGCGTT 60.814 50.000 8.43 0.0 0.00 4.84 R
3129 4807 2.158842 CCCTGCAAAAACACAAATGGGA 60.159 45.455 0.00 0.0 34.34 4.37 R
3145 4831 1.134551 AGATTCGAGCTCTTTCCCTGC 60.135 52.381 12.85 0.0 0.00 4.85 R
3546 5249 0.176680 GGATGTCATGTGACCTCGCT 59.823 55.000 10.40 0.0 44.15 4.93 R
4705 6604 0.464452 GGGCGACACCACTAAGCTAT 59.536 55.000 0.00 0.0 42.05 2.97 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
227 228 5.050295 GCATAGCTTACGTTCTATTTGTCCC 60.050 44.000 0.00 0.00 0.00 4.46
234 235 7.201548 GCTTACGTTCTATTTGTCCCGAAATTA 60.202 37.037 0.00 0.00 0.00 1.40
278 279 8.510505 AGACACTTTTCTTTGATTTATCTGCTC 58.489 33.333 0.00 0.00 0.00 4.26
279 280 8.401490 ACACTTTTCTTTGATTTATCTGCTCT 57.599 30.769 0.00 0.00 0.00 4.09
280 281 8.295288 ACACTTTTCTTTGATTTATCTGCTCTG 58.705 33.333 0.00 0.00 0.00 3.35
281 282 7.754027 CACTTTTCTTTGATTTATCTGCTCTGG 59.246 37.037 0.00 0.00 0.00 3.86
282 283 5.824904 TTCTTTGATTTATCTGCTCTGGC 57.175 39.130 0.00 0.00 39.26 4.85
292 293 3.414486 TGCTCTGGCATGATGGATG 57.586 52.632 0.00 0.00 44.28 3.51
411 453 3.065371 CGTGTTGGCTTCTTGTCTTTCTT 59.935 43.478 0.00 0.00 0.00 2.52
513 584 4.425577 CAGTATTGGACACCTTTCTTGC 57.574 45.455 0.00 0.00 0.00 4.01
516 587 5.647658 CAGTATTGGACACCTTTCTTGCATA 59.352 40.000 0.00 0.00 0.00 3.14
520 591 6.698008 TTGGACACCTTTCTTGCATATATG 57.302 37.500 8.45 8.45 0.00 1.78
521 592 6.000246 TGGACACCTTTCTTGCATATATGA 58.000 37.500 17.10 0.00 0.00 2.15
522 593 6.057533 TGGACACCTTTCTTGCATATATGAG 58.942 40.000 17.10 6.03 0.00 2.90
523 594 6.126796 TGGACACCTTTCTTGCATATATGAGA 60.127 38.462 17.10 8.33 0.00 3.27
524 595 6.939163 GGACACCTTTCTTGCATATATGAGAT 59.061 38.462 17.10 0.00 0.00 2.75
525 596 8.097038 GGACACCTTTCTTGCATATATGAGATA 58.903 37.037 17.10 5.80 0.00 1.98
526 597 9.149225 GACACCTTTCTTGCATATATGAGATAG 57.851 37.037 17.10 13.72 0.00 2.08
527 598 8.099537 ACACCTTTCTTGCATATATGAGATAGG 58.900 37.037 24.36 24.36 33.04 2.57
528 599 8.316946 CACCTTTCTTGCATATATGAGATAGGA 58.683 37.037 28.60 13.46 31.86 2.94
529 600 9.055689 ACCTTTCTTGCATATATGAGATAGGAT 57.944 33.333 28.60 18.35 31.86 3.24
530 601 9.902684 CCTTTCTTGCATATATGAGATAGGATT 57.097 33.333 23.03 0.00 29.87 3.01
536 607 8.728337 TGCATATATGAGATAGGATTTTCAGC 57.272 34.615 17.10 0.00 0.00 4.26
537 608 8.323567 TGCATATATGAGATAGGATTTTCAGCA 58.676 33.333 17.10 0.00 0.00 4.41
538 609 8.610896 GCATATATGAGATAGGATTTTCAGCAC 58.389 37.037 17.10 0.00 0.00 4.40
539 610 9.107177 CATATATGAGATAGGATTTTCAGCACC 57.893 37.037 6.92 0.00 0.00 5.01
540 611 4.156455 TGAGATAGGATTTTCAGCACCC 57.844 45.455 0.00 0.00 0.00 4.61
541 612 3.117888 TGAGATAGGATTTTCAGCACCCC 60.118 47.826 0.00 0.00 0.00 4.95
542 613 2.158755 AGATAGGATTTTCAGCACCCCG 60.159 50.000 0.00 0.00 0.00 5.73
543 614 0.254747 TAGGATTTTCAGCACCCCGG 59.745 55.000 0.00 0.00 0.00 5.73
544 615 1.304134 GGATTTTCAGCACCCCGGT 60.304 57.895 0.00 0.00 0.00 5.28
560 631 4.800764 GTGCCCCTACACCCTCTA 57.199 61.111 0.00 0.00 34.35 2.43
561 632 3.242355 GTGCCCCTACACCCTCTAT 57.758 57.895 0.00 0.00 34.35 1.98
562 633 0.759346 GTGCCCCTACACCCTCTATG 59.241 60.000 0.00 0.00 34.35 2.23
563 634 0.639943 TGCCCCTACACCCTCTATGA 59.360 55.000 0.00 0.00 0.00 2.15
564 635 1.009060 TGCCCCTACACCCTCTATGAA 59.991 52.381 0.00 0.00 0.00 2.57
565 636 1.416772 GCCCCTACACCCTCTATGAAC 59.583 57.143 0.00 0.00 0.00 3.18
566 637 2.759355 CCCCTACACCCTCTATGAACA 58.241 52.381 0.00 0.00 0.00 3.18
567 638 2.700897 CCCCTACACCCTCTATGAACAG 59.299 54.545 0.00 0.00 0.00 3.16
568 639 3.375699 CCCTACACCCTCTATGAACAGT 58.624 50.000 0.00 0.00 0.00 3.55
569 640 4.543689 CCCTACACCCTCTATGAACAGTA 58.456 47.826 0.00 0.00 0.00 2.74
570 641 4.960469 CCCTACACCCTCTATGAACAGTAA 59.040 45.833 0.00 0.00 0.00 2.24
571 642 5.424252 CCCTACACCCTCTATGAACAGTAAA 59.576 44.000 0.00 0.00 0.00 2.01
572 643 6.099845 CCCTACACCCTCTATGAACAGTAAAT 59.900 42.308 0.00 0.00 0.00 1.40
573 644 7.365652 CCCTACACCCTCTATGAACAGTAAATT 60.366 40.741 0.00 0.00 0.00 1.82
574 645 7.711339 CCTACACCCTCTATGAACAGTAAATTC 59.289 40.741 0.00 0.00 0.00 2.17
575 646 7.016153 ACACCCTCTATGAACAGTAAATTCA 57.984 36.000 0.00 0.00 40.25 2.57
576 647 7.458397 ACACCCTCTATGAACAGTAAATTCAA 58.542 34.615 0.00 0.00 39.43 2.69
577 648 7.942341 ACACCCTCTATGAACAGTAAATTCAAA 59.058 33.333 0.00 0.00 39.43 2.69
578 649 8.792633 CACCCTCTATGAACAGTAAATTCAAAA 58.207 33.333 0.00 0.00 39.43 2.44
579 650 8.793592 ACCCTCTATGAACAGTAAATTCAAAAC 58.206 33.333 0.00 0.00 39.43 2.43
580 651 8.792633 CCCTCTATGAACAGTAAATTCAAAACA 58.207 33.333 0.00 0.00 39.43 2.83
624 695 3.813166 TCTGAAACTTTGGGACATCGAAC 59.187 43.478 0.00 0.00 39.30 3.95
627 698 5.309638 TGAAACTTTGGGACATCGAACATA 58.690 37.500 0.00 0.00 39.30 2.29
628 699 5.765677 TGAAACTTTGGGACATCGAACATAA 59.234 36.000 0.00 0.00 39.30 1.90
629 700 6.432783 TGAAACTTTGGGACATCGAACATAAT 59.567 34.615 0.00 0.00 39.30 1.28
630 701 5.818136 ACTTTGGGACATCGAACATAATG 57.182 39.130 0.00 0.00 39.30 1.90
631 702 5.496556 ACTTTGGGACATCGAACATAATGA 58.503 37.500 0.00 0.00 39.30 2.57
632 703 5.943416 ACTTTGGGACATCGAACATAATGAA 59.057 36.000 0.00 0.00 39.30 2.57
633 704 6.432783 ACTTTGGGACATCGAACATAATGAAA 59.567 34.615 0.00 0.00 39.30 2.69
634 705 5.811399 TGGGACATCGAACATAATGAAAC 57.189 39.130 0.00 0.00 0.00 2.78
635 706 5.496556 TGGGACATCGAACATAATGAAACT 58.503 37.500 0.00 0.00 0.00 2.66
636 707 5.943416 TGGGACATCGAACATAATGAAACTT 59.057 36.000 0.00 0.00 0.00 2.66
637 708 6.432783 TGGGACATCGAACATAATGAAACTTT 59.567 34.615 0.00 0.00 0.00 2.66
638 709 7.040062 TGGGACATCGAACATAATGAAACTTTT 60.040 33.333 0.00 0.00 0.00 2.27
639 710 7.273381 GGGACATCGAACATAATGAAACTTTTG 59.727 37.037 0.00 0.00 0.00 2.44
640 711 8.020819 GGACATCGAACATAATGAAACTTTTGA 58.979 33.333 0.00 0.00 0.00 2.69
641 712 9.559958 GACATCGAACATAATGAAACTTTTGAT 57.440 29.630 0.00 0.00 0.00 2.57
642 713 9.345517 ACATCGAACATAATGAAACTTTTGATG 57.654 29.630 7.51 7.51 39.34 3.07
643 714 9.558648 CATCGAACATAATGAAACTTTTGATGA 57.441 29.630 0.00 0.00 37.16 2.92
645 716 9.773328 TCGAACATAATGAAACTTTTGATGATC 57.227 29.630 0.00 0.00 0.00 2.92
646 717 9.778993 CGAACATAATGAAACTTTTGATGATCT 57.221 29.630 0.00 0.00 0.00 2.75
649 720 9.362539 ACATAATGAAACTTTTGATGATCTTGC 57.637 29.630 0.00 0.00 0.00 4.01
650 721 9.361315 CATAATGAAACTTTTGATGATCTTGCA 57.639 29.630 0.00 0.00 0.00 4.08
651 722 9.932207 ATAATGAAACTTTTGATGATCTTGCAA 57.068 25.926 0.00 0.00 0.00 4.08
652 723 8.665643 AATGAAACTTTTGATGATCTTGCAAA 57.334 26.923 0.00 0.00 0.00 3.68
654 725 7.267128 TGAAACTTTTGATGATCTTGCAAAGT 58.733 30.769 0.00 2.14 46.34 2.66
655 726 7.765360 TGAAACTTTTGATGATCTTGCAAAGTT 59.235 29.630 15.31 15.31 46.34 2.66
656 727 8.496707 AAACTTTTGATGATCTTGCAAAGTTT 57.503 26.923 21.05 21.05 46.34 2.66
657 728 8.496707 AACTTTTGATGATCTTGCAAAGTTTT 57.503 26.923 15.31 6.88 46.34 2.43
658 729 9.598517 AACTTTTGATGATCTTGCAAAGTTTTA 57.401 25.926 15.31 0.00 46.34 1.52
659 730 9.252962 ACTTTTGATGATCTTGCAAAGTTTTAG 57.747 29.630 0.00 0.00 46.34 1.85
660 731 7.642071 TTTGATGATCTTGCAAAGTTTTAGC 57.358 32.000 0.00 0.00 46.34 3.09
661 732 6.579666 TGATGATCTTGCAAAGTTTTAGCT 57.420 33.333 0.00 0.00 46.34 3.32
662 733 7.686438 TGATGATCTTGCAAAGTTTTAGCTA 57.314 32.000 0.00 0.00 46.34 3.32
663 734 8.109705 TGATGATCTTGCAAAGTTTTAGCTAA 57.890 30.769 0.86 0.86 46.34 3.09
664 735 8.575589 TGATGATCTTGCAAAGTTTTAGCTAAA 58.424 29.630 14.96 14.96 46.34 1.85
665 736 9.410556 GATGATCTTGCAAAGTTTTAGCTAAAA 57.589 29.630 24.42 24.42 46.34 1.52
666 737 9.762933 ATGATCTTGCAAAGTTTTAGCTAAAAA 57.237 25.926 28.54 12.79 46.34 1.94
667 738 9.762933 TGATCTTGCAAAGTTTTAGCTAAAAAT 57.237 25.926 28.54 25.54 46.34 1.82
681 752 9.769093 TTTAGCTAAAAATAACATTCGAAGAGC 57.231 29.630 16.53 0.03 38.43 4.09
682 753 7.377766 AGCTAAAAATAACATTCGAAGAGCA 57.622 32.000 3.35 0.00 38.43 4.26
683 754 7.244192 AGCTAAAAATAACATTCGAAGAGCAC 58.756 34.615 3.35 0.00 38.43 4.40
684 755 7.119846 AGCTAAAAATAACATTCGAAGAGCACT 59.880 33.333 3.35 0.00 38.43 4.40
685 756 7.426743 GCTAAAAATAACATTCGAAGAGCACTC 59.573 37.037 3.35 0.00 38.43 3.51
686 757 6.801539 AAAATAACATTCGAAGAGCACTCA 57.198 33.333 3.35 0.00 38.43 3.41
687 758 6.801539 AAATAACATTCGAAGAGCACTCAA 57.198 33.333 3.35 0.00 38.43 3.02
688 759 6.801539 AATAACATTCGAAGAGCACTCAAA 57.198 33.333 3.35 0.00 38.43 2.69
689 760 6.992063 ATAACATTCGAAGAGCACTCAAAT 57.008 33.333 3.35 0.00 38.43 2.32
690 761 8.492673 AATAACATTCGAAGAGCACTCAAATA 57.507 30.769 3.35 0.00 38.43 1.40
691 762 6.801539 AACATTCGAAGAGCACTCAAATAA 57.198 33.333 3.35 0.00 38.43 1.40
692 763 6.801539 ACATTCGAAGAGCACTCAAATAAA 57.198 33.333 3.35 0.00 38.43 1.40
693 764 7.202016 ACATTCGAAGAGCACTCAAATAAAA 57.798 32.000 3.35 0.00 38.43 1.52
694 765 7.648142 ACATTCGAAGAGCACTCAAATAAAAA 58.352 30.769 3.35 0.00 38.43 1.94
765 836 1.593196 TTTTTGGTGAGAGCTCCACG 58.407 50.000 21.52 0.00 37.40 4.94
766 837 0.756294 TTTTGGTGAGAGCTCCACGA 59.244 50.000 21.52 17.63 37.40 4.35
767 838 0.756294 TTTGGTGAGAGCTCCACGAA 59.244 50.000 20.60 20.60 37.40 3.85
768 839 0.318441 TTGGTGAGAGCTCCACGAAG 59.682 55.000 20.60 0.00 37.40 3.79
769 840 1.216710 GGTGAGAGCTCCACGAAGG 59.783 63.158 21.52 0.00 35.48 3.46
770 841 1.536943 GGTGAGAGCTCCACGAAGGT 61.537 60.000 21.52 0.00 39.02 3.50
771 842 0.318762 GTGAGAGCTCCACGAAGGTT 59.681 55.000 10.93 0.00 39.02 3.50
772 843 1.544691 GTGAGAGCTCCACGAAGGTTA 59.455 52.381 10.93 0.00 39.02 2.85
773 844 2.166664 GTGAGAGCTCCACGAAGGTTAT 59.833 50.000 10.93 0.00 39.02 1.89
774 845 2.832129 TGAGAGCTCCACGAAGGTTATT 59.168 45.455 10.93 0.00 39.02 1.40
775 846 3.260884 TGAGAGCTCCACGAAGGTTATTT 59.739 43.478 10.93 0.00 39.02 1.40
776 847 3.600388 AGAGCTCCACGAAGGTTATTTG 58.400 45.455 10.93 0.00 39.02 2.32
777 848 3.008049 AGAGCTCCACGAAGGTTATTTGT 59.992 43.478 10.93 0.00 39.02 2.83
778 849 3.751518 AGCTCCACGAAGGTTATTTGTT 58.248 40.909 0.00 0.00 39.02 2.83
779 850 4.142038 AGCTCCACGAAGGTTATTTGTTT 58.858 39.130 0.00 0.00 39.02 2.83
780 851 4.215613 AGCTCCACGAAGGTTATTTGTTTC 59.784 41.667 0.00 0.00 39.02 2.78
781 852 4.215613 GCTCCACGAAGGTTATTTGTTTCT 59.784 41.667 0.00 0.00 39.02 2.52
782 853 5.682943 TCCACGAAGGTTATTTGTTTCTG 57.317 39.130 0.00 0.00 39.02 3.02
783 854 5.369833 TCCACGAAGGTTATTTGTTTCTGA 58.630 37.500 0.00 0.00 39.02 3.27
784 855 5.823570 TCCACGAAGGTTATTTGTTTCTGAA 59.176 36.000 0.00 0.00 39.02 3.02
785 856 6.319152 TCCACGAAGGTTATTTGTTTCTGAAA 59.681 34.615 0.00 0.00 39.02 2.69
786 857 6.416750 CCACGAAGGTTATTTGTTTCTGAAAC 59.583 38.462 22.94 22.94 41.73 2.78
787 858 7.193595 CACGAAGGTTATTTGTTTCTGAAACT 58.806 34.615 27.75 14.54 41.90 2.66
788 859 7.700656 CACGAAGGTTATTTGTTTCTGAAACTT 59.299 33.333 27.75 17.39 41.90 2.66
789 860 8.248253 ACGAAGGTTATTTGTTTCTGAAACTTT 58.752 29.630 27.75 17.12 41.90 2.66
790 861 8.531530 CGAAGGTTATTTGTTTCTGAAACTTTG 58.468 33.333 27.75 14.43 41.90 2.77
791 862 7.770801 AGGTTATTTGTTTCTGAAACTTTGC 57.229 32.000 27.75 15.48 41.90 3.68
792 863 7.327214 AGGTTATTTGTTTCTGAAACTTTGCA 58.673 30.769 27.75 9.89 41.90 4.08
793 864 7.492344 AGGTTATTTGTTTCTGAAACTTTGCAG 59.508 33.333 27.75 0.00 41.90 4.41
794 865 7.254421 GGTTATTTGTTTCTGAAACTTTGCAGG 60.254 37.037 27.75 0.00 41.90 4.85
795 866 5.398603 TTTGTTTCTGAAACTTTGCAGGA 57.601 34.783 27.75 7.93 41.90 3.86
796 867 5.398603 TTGTTTCTGAAACTTTGCAGGAA 57.601 34.783 27.75 12.70 41.90 3.36
797 868 4.743493 TGTTTCTGAAACTTTGCAGGAAC 58.257 39.130 27.75 12.71 46.21 3.62
798 869 4.743493 GTTTCTGAAACTTTGCAGGAACA 58.257 39.130 22.55 0.00 45.63 3.18
799 870 4.637483 TTCTGAAACTTTGCAGGAACAG 57.363 40.909 0.00 0.00 33.05 3.16
800 871 2.358898 TCTGAAACTTTGCAGGAACAGC 59.641 45.455 0.00 0.00 42.84 4.40
801 872 8.984481 GTTTCTGAAACTTTGCAGGAACAGCA 62.984 42.308 22.55 0.00 45.63 4.41
809 880 2.927553 GCAGGAACAGCATACCTTTG 57.072 50.000 0.00 0.00 41.82 2.77
810 881 2.436417 GCAGGAACAGCATACCTTTGA 58.564 47.619 0.00 0.00 41.82 2.69
811 882 3.019564 GCAGGAACAGCATACCTTTGAT 58.980 45.455 0.00 0.00 41.82 2.57
812 883 4.199310 GCAGGAACAGCATACCTTTGATA 58.801 43.478 0.00 0.00 41.82 2.15
813 884 4.640201 GCAGGAACAGCATACCTTTGATAA 59.360 41.667 0.00 0.00 41.82 1.75
814 885 5.300286 GCAGGAACAGCATACCTTTGATAAT 59.700 40.000 0.00 0.00 41.82 1.28
815 886 6.514048 GCAGGAACAGCATACCTTTGATAATC 60.514 42.308 0.00 0.00 41.82 1.75
816 887 6.769822 CAGGAACAGCATACCTTTGATAATCT 59.230 38.462 0.00 0.00 31.06 2.40
817 888 7.284034 CAGGAACAGCATACCTTTGATAATCTT 59.716 37.037 0.00 0.00 31.06 2.40
818 889 7.836183 AGGAACAGCATACCTTTGATAATCTTT 59.164 33.333 0.00 0.00 0.00 2.52
819 890 7.917505 GGAACAGCATACCTTTGATAATCTTTG 59.082 37.037 0.00 0.00 0.00 2.77
820 891 8.579850 AACAGCATACCTTTGATAATCTTTGA 57.420 30.769 0.00 0.00 0.00 2.69
821 892 8.757982 ACAGCATACCTTTGATAATCTTTGAT 57.242 30.769 0.00 0.00 0.00 2.57
822 893 8.844244 ACAGCATACCTTTGATAATCTTTGATC 58.156 33.333 0.00 0.00 0.00 2.92
823 894 8.295288 CAGCATACCTTTGATAATCTTTGATCC 58.705 37.037 0.00 0.00 0.00 3.36
824 895 7.449704 AGCATACCTTTGATAATCTTTGATCCC 59.550 37.037 0.00 0.00 0.00 3.85
825 896 7.449704 GCATACCTTTGATAATCTTTGATCCCT 59.550 37.037 0.00 0.00 0.00 4.20
826 897 8.790718 CATACCTTTGATAATCTTTGATCCCTG 58.209 37.037 0.00 0.00 0.00 4.45
827 898 6.973642 ACCTTTGATAATCTTTGATCCCTGA 58.026 36.000 0.00 0.00 0.00 3.86
828 899 7.413446 ACCTTTGATAATCTTTGATCCCTGAA 58.587 34.615 0.00 0.00 0.00 3.02
829 900 7.895429 ACCTTTGATAATCTTTGATCCCTGAAA 59.105 33.333 0.00 0.00 0.00 2.69
830 901 8.411683 CCTTTGATAATCTTTGATCCCTGAAAG 58.588 37.037 0.00 0.00 0.00 2.62
831 902 8.884124 TTTGATAATCTTTGATCCCTGAAAGT 57.116 30.769 3.88 0.00 32.11 2.66
832 903 8.884124 TTGATAATCTTTGATCCCTGAAAGTT 57.116 30.769 3.88 1.94 32.11 2.66
833 904 8.884124 TGATAATCTTTGATCCCTGAAAGTTT 57.116 30.769 3.88 0.00 32.11 2.66
834 905 8.960591 TGATAATCTTTGATCCCTGAAAGTTTC 58.039 33.333 8.75 8.75 32.11 2.78
835 906 9.183368 GATAATCTTTGATCCCTGAAAGTTTCT 57.817 33.333 16.33 0.00 32.11 2.52
836 907 6.830873 ATCTTTGATCCCTGAAAGTTTCTG 57.169 37.500 16.33 15.04 32.11 3.02
837 908 5.940617 TCTTTGATCCCTGAAAGTTTCTGA 58.059 37.500 20.52 12.84 32.11 3.27
838 909 6.364701 TCTTTGATCCCTGAAAGTTTCTGAA 58.635 36.000 20.52 10.70 32.11 3.02
839 910 7.006509 TCTTTGATCCCTGAAAGTTTCTGAAT 58.993 34.615 20.52 14.12 32.11 2.57
840 911 7.506938 TCTTTGATCCCTGAAAGTTTCTGAATT 59.493 33.333 20.52 7.21 32.11 2.17
841 912 7.601705 TTGATCCCTGAAAGTTTCTGAATTT 57.398 32.000 20.52 5.76 0.00 1.82
842 913 7.601705 TGATCCCTGAAAGTTTCTGAATTTT 57.398 32.000 20.52 0.00 0.00 1.82
843 914 8.021898 TGATCCCTGAAAGTTTCTGAATTTTT 57.978 30.769 20.52 0.00 0.00 1.94
878 949 6.764308 ATGAATTTACTGTTCATGAGGGTG 57.236 37.500 0.00 0.00 42.87 4.61
879 950 5.630121 TGAATTTACTGTTCATGAGGGTGT 58.370 37.500 0.00 0.00 31.07 4.16
880 951 6.774673 TGAATTTACTGTTCATGAGGGTGTA 58.225 36.000 0.00 0.00 31.07 2.90
881 952 6.878923 TGAATTTACTGTTCATGAGGGTGTAG 59.121 38.462 0.00 0.00 31.07 2.74
882 953 4.819105 TTACTGTTCATGAGGGTGTAGG 57.181 45.455 0.00 0.00 0.00 3.18
883 954 1.909302 ACTGTTCATGAGGGTGTAGGG 59.091 52.381 0.00 0.00 0.00 3.53
884 955 1.210478 CTGTTCATGAGGGTGTAGGGG 59.790 57.143 0.00 0.00 0.00 4.79
885 956 0.107165 GTTCATGAGGGTGTAGGGGC 60.107 60.000 0.00 0.00 0.00 5.80
886 957 0.548926 TTCATGAGGGTGTAGGGGCA 60.549 55.000 0.00 0.00 0.00 5.36
887 958 1.224592 CATGAGGGTGTAGGGGCAC 59.775 63.158 0.00 0.00 38.56 5.01
900 971 3.712907 GGCACCCGGGAGCTGTTA 61.713 66.667 36.82 0.00 32.43 2.41
901 972 2.125106 GCACCCGGGAGCTGTTAG 60.125 66.667 32.83 10.45 0.00 2.34
902 973 2.656069 GCACCCGGGAGCTGTTAGA 61.656 63.158 32.83 0.00 0.00 2.10
903 974 1.218316 CACCCGGGAGCTGTTAGAC 59.782 63.158 32.02 0.00 0.00 2.59
904 975 1.229082 ACCCGGGAGCTGTTAGACA 60.229 57.895 32.02 0.00 0.00 3.41
905 976 0.617820 ACCCGGGAGCTGTTAGACAT 60.618 55.000 32.02 0.00 0.00 3.06
906 977 0.541863 CCCGGGAGCTGTTAGACATT 59.458 55.000 18.48 0.00 0.00 2.71
907 978 1.065418 CCCGGGAGCTGTTAGACATTT 60.065 52.381 18.48 0.00 0.00 2.32
908 979 2.280628 CCGGGAGCTGTTAGACATTTC 58.719 52.381 0.00 0.00 0.00 2.17
909 980 2.093447 CCGGGAGCTGTTAGACATTTCT 60.093 50.000 0.00 0.00 35.66 2.52
910 981 3.190874 CGGGAGCTGTTAGACATTTCTC 58.809 50.000 0.00 0.00 32.75 2.87
1086 1185 0.392193 AAAGATGTGAGGGCTGCGAG 60.392 55.000 0.00 0.00 0.00 5.03
1158 1257 1.270732 TGCATGGTTGGCAATTTCCAC 60.271 47.619 9.92 0.62 38.54 4.02
1369 1469 3.243569 CGTTCAGGCTACCAAGGATCTAG 60.244 52.174 0.00 0.00 0.00 2.43
1540 1640 1.664965 GTTCTCGTGAACTGCGGCT 60.665 57.895 20.18 0.00 46.56 5.52
1704 1804 3.430042 AGGCAGAAGCATTTCTTGAGA 57.570 42.857 0.00 0.00 41.71 3.27
2171 3505 4.037923 GTCATTCCTCAAAGAAACAAGGCA 59.962 41.667 0.00 0.00 0.00 4.75
2436 3936 1.279271 GGGGTGCAATCTGACTACAGT 59.721 52.381 0.00 0.00 43.81 3.55
3069 4708 5.125097 TGAGTCAACGTAGAAATAGACTCCC 59.875 44.000 15.31 0.00 46.93 4.30
3145 4831 6.690194 TTGGAATTCCCATTTGTGTTTTTG 57.310 33.333 21.90 0.00 46.10 2.44
3233 4919 2.975489 AGGAGAGTGACAAGGAACATGT 59.025 45.455 0.00 0.00 45.55 3.21
3308 5000 6.080682 AGCAAGAGGATATATTCAGGTCAGA 58.919 40.000 0.00 0.00 0.00 3.27
3339 5031 3.184736 GGGCAATCCCGTGTACATT 57.815 52.632 0.00 0.00 43.94 2.71
3343 5035 0.738389 CAATCCCGTGTACATTGCCC 59.262 55.000 0.00 0.00 0.00 5.36
3403 5095 3.695830 TGGTAAGCCCAGTTGTTCTAG 57.304 47.619 0.00 0.00 38.72 2.43
3408 5100 5.585047 GGTAAGCCCAGTTGTTCTAGTAATG 59.415 44.000 0.00 0.00 0.00 1.90
3417 5109 7.148641 CAGTTGTTCTAGTAATGACAGACTGT 58.851 38.462 8.12 8.12 0.00 3.55
3431 5123 5.302059 TGACAGACTGTAATACCTAGATGGC 59.698 44.000 8.41 0.00 40.22 4.40
3434 5126 6.183360 ACAGACTGTAATACCTAGATGGCTTG 60.183 42.308 6.24 0.00 40.22 4.01
3443 5135 2.019984 CTAGATGGCTTGGGAAACTGC 58.980 52.381 0.00 0.00 0.00 4.40
3464 5156 5.809001 TGCCTTTGATAGACATTCTGAACT 58.191 37.500 0.00 0.00 0.00 3.01
3470 5163 4.158579 TGATAGACATTCTGAACTGTCGCT 59.841 41.667 18.45 13.37 45.08 4.93
3546 5249 2.586079 GCGGCTAAGCATCTCGCA 60.586 61.111 0.00 0.00 46.13 5.10
3578 5281 1.189752 GACATCCTGCTCCTGAGACA 58.810 55.000 0.00 0.00 0.00 3.41
3627 5330 6.832384 TGAGGTACTACTACCATTCGATCTTT 59.168 38.462 1.95 0.00 44.75 2.52
3637 5346 4.227527 ACCATTCGATCTTTAGGGGTTTCT 59.772 41.667 0.00 0.00 0.00 2.52
3722 5431 1.986575 GAGCTGATCAAAGGCGTGCC 61.987 60.000 1.67 1.67 0.00 5.01
3801 5510 3.012047 TGGACTAACTAGCCAGGTTCCTA 59.988 47.826 0.00 0.00 0.00 2.94
3807 5516 2.240667 ACTAGCCAGGTTCCTACGTAGA 59.759 50.000 24.15 7.36 0.00 2.59
3821 5530 6.231951 TCCTACGTAGATGTATCCTTCTGAG 58.768 44.000 24.15 1.32 0.00 3.35
3825 5534 7.876936 ACGTAGATGTATCCTTCTGAGTTTA 57.123 36.000 0.00 0.00 0.00 2.01
3830 5539 7.653647 AGATGTATCCTTCTGAGTTTATCGTC 58.346 38.462 0.00 0.00 0.00 4.20
3835 5544 5.962433 TCCTTCTGAGTTTATCGTCGAATT 58.038 37.500 0.00 0.00 0.00 2.17
3892 5608 4.430908 AGTAGTTTATGTACGAGGCAAGC 58.569 43.478 0.00 0.00 0.00 4.01
4113 5872 9.134734 GAGTATCAGCTAGTGCATATTTTACTC 57.865 37.037 0.00 0.00 42.74 2.59
4129 5888 1.034838 ACTCGAGGGCTGCTACTCAG 61.035 60.000 18.41 17.00 45.62 3.35
4172 5939 8.676454 TTGTAACTTGTGTGTTCATGTTTAAC 57.324 30.769 0.00 0.00 37.11 2.01
4209 5976 3.583228 TCTCCTACTGTTCAGGGTTCAA 58.417 45.455 4.82 0.00 33.66 2.69
4210 5977 3.971305 TCTCCTACTGTTCAGGGTTCAAA 59.029 43.478 4.82 0.00 33.66 2.69
4211 5978 4.410883 TCTCCTACTGTTCAGGGTTCAAAA 59.589 41.667 4.82 0.00 33.66 2.44
4331 6110 5.946942 AGACCTGTGATGATATGAAGTGT 57.053 39.130 0.00 0.00 0.00 3.55
4335 6114 6.577103 ACCTGTGATGATATGAAGTGTGTAG 58.423 40.000 0.00 0.00 0.00 2.74
4336 6115 6.155221 ACCTGTGATGATATGAAGTGTGTAGT 59.845 38.462 0.00 0.00 0.00 2.73
4337 6116 7.044181 CCTGTGATGATATGAAGTGTGTAGTT 58.956 38.462 0.00 0.00 0.00 2.24
4338 6117 7.010830 CCTGTGATGATATGAAGTGTGTAGTTG 59.989 40.741 0.00 0.00 0.00 3.16
4339 6118 6.313658 TGTGATGATATGAAGTGTGTAGTTGC 59.686 38.462 0.00 0.00 0.00 4.17
4340 6119 6.313658 GTGATGATATGAAGTGTGTAGTTGCA 59.686 38.462 0.00 0.00 0.00 4.08
4341 6120 6.878389 TGATGATATGAAGTGTGTAGTTGCAA 59.122 34.615 0.00 0.00 0.00 4.08
4342 6121 6.480524 TGATATGAAGTGTGTAGTTGCAAC 57.519 37.500 22.17 22.17 0.00 4.17
4343 6122 5.994668 TGATATGAAGTGTGTAGTTGCAACA 59.005 36.000 30.11 14.17 0.00 3.33
4344 6123 6.654582 TGATATGAAGTGTGTAGTTGCAACAT 59.345 34.615 30.11 17.54 0.00 2.71
4345 6124 5.772825 ATGAAGTGTGTAGTTGCAACATT 57.227 34.783 30.11 14.08 0.00 2.71
4346 6125 5.574891 TGAAGTGTGTAGTTGCAACATTT 57.425 34.783 30.11 13.56 0.00 2.32
4347 6126 5.960113 TGAAGTGTGTAGTTGCAACATTTT 58.040 33.333 30.11 12.97 0.00 1.82
4348 6127 6.393990 TGAAGTGTGTAGTTGCAACATTTTT 58.606 32.000 30.11 12.59 0.00 1.94
4379 6158 5.690997 CAGAAAAACTGTAAGGAAGGTCC 57.309 43.478 0.00 0.00 41.30 4.46
4380 6159 4.519350 CAGAAAAACTGTAAGGAAGGTCCC 59.481 45.833 0.00 0.00 41.30 4.46
4381 6160 4.415846 AGAAAAACTGTAAGGAAGGTCCCT 59.584 41.667 0.00 0.00 37.19 4.20
4382 6161 5.609708 AGAAAAACTGTAAGGAAGGTCCCTA 59.390 40.000 0.00 0.00 37.19 3.53
4383 6162 4.904895 AAACTGTAAGGAAGGTCCCTAC 57.095 45.455 0.00 0.00 37.19 3.18
4384 6163 3.555117 ACTGTAAGGAAGGTCCCTACA 57.445 47.619 5.78 5.78 40.22 2.74
4386 6165 2.829023 TGTAAGGAAGGTCCCTACAGG 58.171 52.381 2.25 0.00 38.25 4.00
4387 6166 2.113052 TGTAAGGAAGGTCCCTACAGGT 59.887 50.000 2.25 0.00 38.25 4.00
4388 6167 3.337605 TGTAAGGAAGGTCCCTACAGGTA 59.662 47.826 2.25 0.00 38.25 3.08
4389 6168 2.850695 AGGAAGGTCCCTACAGGTAG 57.149 55.000 0.00 0.00 37.19 3.18
4390 6169 2.009165 AGGAAGGTCCCTACAGGTAGT 58.991 52.381 5.79 0.00 37.19 2.73
4396 6175 2.614734 GGTCCCTACAGGTAGTTGCAAC 60.615 54.545 22.17 22.17 36.75 4.17
4412 6192 2.761767 TGCAACATTCAGCATGGCTTAT 59.238 40.909 0.00 0.00 36.40 1.73
4497 6280 4.219115 TGCATGTTTTCCCTCTGGTTTTA 58.781 39.130 0.00 0.00 0.00 1.52
4553 6336 8.493607 TCCAGTTCATAATCATATCTGGTTTCA 58.506 33.333 0.00 0.00 40.91 2.69
4554 6337 8.562892 CCAGTTCATAATCATATCTGGTTTCAC 58.437 37.037 0.00 0.00 37.00 3.18
4586 6369 2.754946 ATGTGAAGCAAATTGGCAGG 57.245 45.000 7.75 0.00 35.83 4.85
4628 6411 2.484264 ACAGCAAGAATCAAGCGGTAAC 59.516 45.455 1.62 0.00 35.01 2.50
4629 6412 2.483877 CAGCAAGAATCAAGCGGTAACA 59.516 45.455 0.00 0.00 0.00 2.41
4635 6418 6.458206 GCAAGAATCAAGCGGTAACATATTCA 60.458 38.462 0.00 0.00 0.00 2.57
4703 6602 2.481795 CGATTTGATTTGTGGATGGGCC 60.482 50.000 0.00 0.00 37.10 5.80
4705 6604 0.115944 TTGATTTGTGGATGGGCCCA 59.884 50.000 30.92 30.92 34.97 5.36
4711 6610 1.288508 TGTGGATGGGCCCATAGCTT 61.289 55.000 37.57 17.20 43.05 3.74
4734 6633 3.625897 TGTCGCCCCACTGACCTG 61.626 66.667 0.00 0.00 34.18 4.00
4741 6640 1.843421 CCCACTGACCTGGGTTCAA 59.157 57.895 0.00 0.00 45.58 2.69
4752 6651 4.716003 GGTTCAACCCCTCTTCGG 57.284 61.111 0.00 0.00 30.04 4.30
4770 6669 2.423185 TCGGGTCGAAATTAGCGTCTAA 59.577 45.455 0.00 2.53 31.06 2.10
4780 6679 6.074782 CGAAATTAGCGTCTAACATTCTCTCC 60.075 42.308 16.03 0.00 0.00 3.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
290 291 2.945008 CCAACTTCACATGGATACGCAT 59.055 45.455 0.00 0.00 39.12 4.73
292 293 2.627945 TCCAACTTCACATGGATACGC 58.372 47.619 0.00 0.00 40.74 4.42
293 294 4.000325 TGTTCCAACTTCACATGGATACG 59.000 43.478 0.00 0.00 44.83 3.06
295 296 5.013079 AGTCTGTTCCAACTTCACATGGATA 59.987 40.000 0.00 0.00 44.83 2.59
296 297 4.074970 GTCTGTTCCAACTTCACATGGAT 58.925 43.478 0.00 0.00 44.83 3.41
297 298 3.136443 AGTCTGTTCCAACTTCACATGGA 59.864 43.478 0.00 0.00 43.84 3.41
298 299 3.251729 CAGTCTGTTCCAACTTCACATGG 59.748 47.826 0.00 0.00 38.09 3.66
299 300 3.304257 GCAGTCTGTTCCAACTTCACATG 60.304 47.826 0.93 0.00 0.00 3.21
300 301 2.880890 GCAGTCTGTTCCAACTTCACAT 59.119 45.455 0.93 0.00 0.00 3.21
342 379 9.696917 TTCTTTCAGAGGAAAATAAAAAGATGC 57.303 29.630 0.00 0.00 42.18 3.91
389 426 2.614057 AGAAAGACAAGAAGCCAACACG 59.386 45.455 0.00 0.00 0.00 4.49
424 466 9.202273 CTTCAGGTGATCTATAGATTTAGCAAC 57.798 37.037 16.37 11.94 34.37 4.17
513 584 9.107177 GGTGCTGAAAATCCTATCTCATATATG 57.893 37.037 6.36 6.36 0.00 1.78
516 587 6.479884 GGGTGCTGAAAATCCTATCTCATAT 58.520 40.000 0.00 0.00 0.00 1.78
520 591 3.481453 GGGGTGCTGAAAATCCTATCTC 58.519 50.000 0.00 0.00 0.00 2.75
521 592 2.158755 CGGGGTGCTGAAAATCCTATCT 60.159 50.000 0.00 0.00 0.00 1.98
522 593 2.222027 CGGGGTGCTGAAAATCCTATC 58.778 52.381 0.00 0.00 0.00 2.08
523 594 1.133792 CCGGGGTGCTGAAAATCCTAT 60.134 52.381 0.00 0.00 0.00 2.57
524 595 0.254747 CCGGGGTGCTGAAAATCCTA 59.745 55.000 0.00 0.00 0.00 2.94
525 596 1.000896 CCGGGGTGCTGAAAATCCT 60.001 57.895 0.00 0.00 0.00 3.24
526 597 1.304134 ACCGGGGTGCTGAAAATCC 60.304 57.895 6.32 0.00 0.00 3.01
527 598 1.883021 CACCGGGGTGCTGAAAATC 59.117 57.895 6.32 0.00 39.39 2.17
528 599 4.095590 CACCGGGGTGCTGAAAAT 57.904 55.556 6.32 0.00 39.39 1.82
543 614 0.759346 CATAGAGGGTGTAGGGGCAC 59.241 60.000 0.00 0.00 38.56 5.01
544 615 0.639943 TCATAGAGGGTGTAGGGGCA 59.360 55.000 0.00 0.00 0.00 5.36
545 616 1.416772 GTTCATAGAGGGTGTAGGGGC 59.583 57.143 0.00 0.00 0.00 5.80
546 617 2.700897 CTGTTCATAGAGGGTGTAGGGG 59.299 54.545 0.00 0.00 0.00 4.79
547 618 3.375699 ACTGTTCATAGAGGGTGTAGGG 58.624 50.000 0.00 0.00 0.00 3.53
548 619 6.540438 TTTACTGTTCATAGAGGGTGTAGG 57.460 41.667 0.00 0.00 0.00 3.18
549 620 8.258007 TGAATTTACTGTTCATAGAGGGTGTAG 58.742 37.037 0.00 0.00 31.07 2.74
550 621 8.141298 TGAATTTACTGTTCATAGAGGGTGTA 57.859 34.615 0.00 0.00 31.07 2.90
551 622 7.016153 TGAATTTACTGTTCATAGAGGGTGT 57.984 36.000 0.00 0.00 31.07 4.16
552 623 7.921786 TTGAATTTACTGTTCATAGAGGGTG 57.078 36.000 0.00 0.00 35.68 4.61
553 624 8.793592 GTTTTGAATTTACTGTTCATAGAGGGT 58.206 33.333 0.00 0.00 35.68 4.34
554 625 8.792633 TGTTTTGAATTTACTGTTCATAGAGGG 58.207 33.333 0.00 0.00 35.68 4.30
589 660 9.423061 CCCAAAGTTTCAGATATTTTCGATTTT 57.577 29.630 0.00 0.00 0.00 1.82
590 661 8.802267 TCCCAAAGTTTCAGATATTTTCGATTT 58.198 29.630 0.00 0.00 0.00 2.17
591 662 8.244113 GTCCCAAAGTTTCAGATATTTTCGATT 58.756 33.333 0.00 0.00 0.00 3.34
592 663 7.393234 TGTCCCAAAGTTTCAGATATTTTCGAT 59.607 33.333 0.00 0.00 0.00 3.59
593 664 6.712998 TGTCCCAAAGTTTCAGATATTTTCGA 59.287 34.615 0.00 0.00 0.00 3.71
594 665 6.908825 TGTCCCAAAGTTTCAGATATTTTCG 58.091 36.000 0.00 0.00 0.00 3.46
595 666 7.698130 CGATGTCCCAAAGTTTCAGATATTTTC 59.302 37.037 0.00 0.00 0.00 2.29
596 667 7.393234 TCGATGTCCCAAAGTTTCAGATATTTT 59.607 33.333 0.00 0.00 0.00 1.82
597 668 6.884295 TCGATGTCCCAAAGTTTCAGATATTT 59.116 34.615 0.00 0.00 0.00 1.40
598 669 6.414732 TCGATGTCCCAAAGTTTCAGATATT 58.585 36.000 0.00 0.00 0.00 1.28
599 670 5.989477 TCGATGTCCCAAAGTTTCAGATAT 58.011 37.500 0.00 0.00 0.00 1.63
600 671 5.414789 TCGATGTCCCAAAGTTTCAGATA 57.585 39.130 0.00 0.00 0.00 1.98
601 672 4.286297 TCGATGTCCCAAAGTTTCAGAT 57.714 40.909 0.00 0.00 0.00 2.90
602 673 3.762407 TCGATGTCCCAAAGTTTCAGA 57.238 42.857 0.00 0.00 0.00 3.27
603 674 3.563808 TGTTCGATGTCCCAAAGTTTCAG 59.436 43.478 0.00 0.00 0.00 3.02
604 675 3.546724 TGTTCGATGTCCCAAAGTTTCA 58.453 40.909 0.00 0.00 0.00 2.69
605 676 4.766404 ATGTTCGATGTCCCAAAGTTTC 57.234 40.909 0.00 0.00 0.00 2.78
606 677 6.432783 TCATTATGTTCGATGTCCCAAAGTTT 59.567 34.615 0.00 0.00 0.00 2.66
607 678 5.943416 TCATTATGTTCGATGTCCCAAAGTT 59.057 36.000 0.00 0.00 0.00 2.66
608 679 5.496556 TCATTATGTTCGATGTCCCAAAGT 58.503 37.500 0.00 0.00 0.00 2.66
609 680 6.435430 TTCATTATGTTCGATGTCCCAAAG 57.565 37.500 0.00 0.00 0.00 2.77
610 681 6.432783 AGTTTCATTATGTTCGATGTCCCAAA 59.567 34.615 0.00 0.00 0.00 3.28
611 682 5.943416 AGTTTCATTATGTTCGATGTCCCAA 59.057 36.000 0.00 0.00 0.00 4.12
612 683 5.496556 AGTTTCATTATGTTCGATGTCCCA 58.503 37.500 0.00 0.00 0.00 4.37
613 684 6.436843 AAGTTTCATTATGTTCGATGTCCC 57.563 37.500 0.00 0.00 0.00 4.46
614 685 8.020819 TCAAAAGTTTCATTATGTTCGATGTCC 58.979 33.333 0.00 0.00 0.00 4.02
624 695 9.361315 TGCAAGATCATCAAAAGTTTCATTATG 57.639 29.630 0.00 0.00 0.00 1.90
627 698 8.665643 TTTGCAAGATCATCAAAAGTTTCATT 57.334 26.923 0.00 0.00 0.00 2.57
628 699 7.929785 ACTTTGCAAGATCATCAAAAGTTTCAT 59.070 29.630 0.00 0.00 30.47 2.57
629 700 7.267128 ACTTTGCAAGATCATCAAAAGTTTCA 58.733 30.769 0.00 0.00 30.47 2.69
630 701 7.704789 ACTTTGCAAGATCATCAAAAGTTTC 57.295 32.000 0.00 0.00 30.47 2.78
631 702 8.496707 AAACTTTGCAAGATCATCAAAAGTTT 57.503 26.923 22.79 22.79 32.73 2.66
632 703 8.496707 AAAACTTTGCAAGATCATCAAAAGTT 57.503 26.923 16.93 16.93 30.47 2.66
633 704 9.252962 CTAAAACTTTGCAAGATCATCAAAAGT 57.747 29.630 0.00 9.50 30.47 2.66
634 705 8.219105 GCTAAAACTTTGCAAGATCATCAAAAG 58.781 33.333 0.00 2.72 30.47 2.27
635 706 7.927629 AGCTAAAACTTTGCAAGATCATCAAAA 59.072 29.630 0.00 0.00 30.47 2.44
636 707 7.436118 AGCTAAAACTTTGCAAGATCATCAAA 58.564 30.769 0.00 1.46 0.00 2.69
637 708 6.985117 AGCTAAAACTTTGCAAGATCATCAA 58.015 32.000 0.00 0.00 0.00 2.57
638 709 6.579666 AGCTAAAACTTTGCAAGATCATCA 57.420 33.333 0.00 0.00 0.00 3.07
639 710 8.970691 TTTAGCTAAAACTTTGCAAGATCATC 57.029 30.769 16.53 0.00 0.00 2.92
640 711 9.762933 TTTTTAGCTAAAACTTTGCAAGATCAT 57.237 25.926 27.22 0.00 35.14 2.45
641 712 9.762933 ATTTTTAGCTAAAACTTTGCAAGATCA 57.237 25.926 27.22 11.33 38.48 2.92
655 726 9.769093 GCTCTTCGAATGTTATTTTTAGCTAAA 57.231 29.630 14.96 14.96 0.00 1.85
656 727 8.941977 TGCTCTTCGAATGTTATTTTTAGCTAA 58.058 29.630 0.86 0.86 0.00 3.09
657 728 8.388103 GTGCTCTTCGAATGTTATTTTTAGCTA 58.612 33.333 0.00 0.00 0.00 3.32
658 729 7.119846 AGTGCTCTTCGAATGTTATTTTTAGCT 59.880 33.333 0.00 0.00 0.00 3.32
659 730 7.244192 AGTGCTCTTCGAATGTTATTTTTAGC 58.756 34.615 0.00 0.00 0.00 3.09
660 731 8.443160 TGAGTGCTCTTCGAATGTTATTTTTAG 58.557 33.333 0.00 0.00 0.00 1.85
661 732 8.317891 TGAGTGCTCTTCGAATGTTATTTTTA 57.682 30.769 0.00 0.00 0.00 1.52
662 733 7.202016 TGAGTGCTCTTCGAATGTTATTTTT 57.798 32.000 0.00 0.00 0.00 1.94
663 734 6.801539 TGAGTGCTCTTCGAATGTTATTTT 57.198 33.333 0.00 0.00 0.00 1.82
664 735 6.801539 TTGAGTGCTCTTCGAATGTTATTT 57.198 33.333 0.00 0.00 0.00 1.40
665 736 6.801539 TTTGAGTGCTCTTCGAATGTTATT 57.198 33.333 0.00 0.00 0.00 1.40
666 737 6.992063 ATTTGAGTGCTCTTCGAATGTTAT 57.008 33.333 0.00 0.00 0.00 1.89
667 738 7.899178 TTATTTGAGTGCTCTTCGAATGTTA 57.101 32.000 0.00 0.00 0.00 2.41
668 739 6.801539 TTATTTGAGTGCTCTTCGAATGTT 57.198 33.333 0.00 0.00 0.00 2.71
669 740 6.801539 TTTATTTGAGTGCTCTTCGAATGT 57.198 33.333 0.00 0.00 0.00 2.71
746 817 1.140052 TCGTGGAGCTCTCACCAAAAA 59.860 47.619 22.03 7.09 37.94 1.94
747 818 0.756294 TCGTGGAGCTCTCACCAAAA 59.244 50.000 22.03 8.86 37.94 2.44
748 819 0.756294 TTCGTGGAGCTCTCACCAAA 59.244 50.000 22.03 16.13 37.94 3.28
749 820 0.318441 CTTCGTGGAGCTCTCACCAA 59.682 55.000 22.03 17.15 37.94 3.67
750 821 1.536073 CCTTCGTGGAGCTCTCACCA 61.536 60.000 22.03 12.18 38.35 4.17
751 822 1.216710 CCTTCGTGGAGCTCTCACC 59.783 63.158 22.03 6.07 38.35 4.02
752 823 0.318762 AACCTTCGTGGAGCTCTCAC 59.681 55.000 14.64 17.70 39.71 3.51
753 824 1.919240 TAACCTTCGTGGAGCTCTCA 58.081 50.000 14.64 7.25 39.71 3.27
754 825 3.528597 AATAACCTTCGTGGAGCTCTC 57.471 47.619 14.64 4.40 39.71 3.20
755 826 3.008049 ACAAATAACCTTCGTGGAGCTCT 59.992 43.478 14.64 0.00 39.71 4.09
756 827 3.335579 ACAAATAACCTTCGTGGAGCTC 58.664 45.455 4.71 4.71 39.71 4.09
757 828 3.418684 ACAAATAACCTTCGTGGAGCT 57.581 42.857 4.38 0.00 39.71 4.09
758 829 4.215613 AGAAACAAATAACCTTCGTGGAGC 59.784 41.667 4.38 0.00 39.71 4.70
759 830 5.468746 TCAGAAACAAATAACCTTCGTGGAG 59.531 40.000 4.38 0.00 39.71 3.86
760 831 5.369833 TCAGAAACAAATAACCTTCGTGGA 58.630 37.500 4.38 0.00 39.71 4.02
761 832 5.682943 TCAGAAACAAATAACCTTCGTGG 57.317 39.130 0.00 0.00 42.93 4.94
762 833 7.193595 AGTTTCAGAAACAAATAACCTTCGTG 58.806 34.615 24.85 0.00 43.79 4.35
763 834 7.329588 AGTTTCAGAAACAAATAACCTTCGT 57.670 32.000 24.85 0.01 43.79 3.85
764 835 8.531530 CAAAGTTTCAGAAACAAATAACCTTCG 58.468 33.333 24.85 0.00 43.79 3.79
765 836 8.328146 GCAAAGTTTCAGAAACAAATAACCTTC 58.672 33.333 24.85 0.00 43.79 3.46
766 837 7.821846 TGCAAAGTTTCAGAAACAAATAACCTT 59.178 29.630 24.85 7.71 43.79 3.50
767 838 7.327214 TGCAAAGTTTCAGAAACAAATAACCT 58.673 30.769 24.85 2.03 43.79 3.50
768 839 7.254421 CCTGCAAAGTTTCAGAAACAAATAACC 60.254 37.037 24.85 9.10 43.79 2.85
769 840 7.491048 TCCTGCAAAGTTTCAGAAACAAATAAC 59.509 33.333 24.85 11.33 43.79 1.89
770 841 7.551585 TCCTGCAAAGTTTCAGAAACAAATAA 58.448 30.769 24.85 9.03 43.79 1.40
771 842 7.106439 TCCTGCAAAGTTTCAGAAACAAATA 57.894 32.000 24.85 8.71 43.79 1.40
772 843 5.976458 TCCTGCAAAGTTTCAGAAACAAAT 58.024 33.333 24.85 10.22 43.79 2.32
773 844 5.398603 TCCTGCAAAGTTTCAGAAACAAA 57.601 34.783 24.85 7.21 43.79 2.83
774 845 5.167845 GTTCCTGCAAAGTTTCAGAAACAA 58.832 37.500 24.85 7.71 43.79 2.83
775 846 4.219507 TGTTCCTGCAAAGTTTCAGAAACA 59.780 37.500 24.85 12.42 43.79 2.83
776 847 4.743493 TGTTCCTGCAAAGTTTCAGAAAC 58.257 39.130 17.11 17.11 41.69 2.78
777 848 4.677779 GCTGTTCCTGCAAAGTTTCAGAAA 60.678 41.667 13.42 0.00 32.26 2.52
778 849 3.181487 GCTGTTCCTGCAAAGTTTCAGAA 60.181 43.478 13.42 1.13 32.26 3.02
779 850 2.358898 GCTGTTCCTGCAAAGTTTCAGA 59.641 45.455 13.42 0.00 32.26 3.27
780 851 2.099592 TGCTGTTCCTGCAAAGTTTCAG 59.900 45.455 0.00 7.63 35.52 3.02
781 852 2.098614 TGCTGTTCCTGCAAAGTTTCA 58.901 42.857 0.00 0.00 35.52 2.69
782 853 2.869233 TGCTGTTCCTGCAAAGTTTC 57.131 45.000 0.00 0.00 35.52 2.78
783 854 3.005791 GGTATGCTGTTCCTGCAAAGTTT 59.994 43.478 0.00 0.00 41.24 2.66
784 855 2.558359 GGTATGCTGTTCCTGCAAAGTT 59.442 45.455 0.00 0.00 41.24 2.66
785 856 2.162681 GGTATGCTGTTCCTGCAAAGT 58.837 47.619 0.00 0.00 41.24 2.66
786 857 2.440409 AGGTATGCTGTTCCTGCAAAG 58.560 47.619 0.00 0.00 41.24 2.77
787 858 2.584835 AGGTATGCTGTTCCTGCAAA 57.415 45.000 0.00 0.00 41.24 3.68
788 859 2.557924 CAAAGGTATGCTGTTCCTGCAA 59.442 45.455 0.00 0.00 41.24 4.08
789 860 2.161855 CAAAGGTATGCTGTTCCTGCA 58.838 47.619 0.00 0.00 42.03 4.41
790 861 2.436417 TCAAAGGTATGCTGTTCCTGC 58.564 47.619 0.00 0.00 0.00 4.85
791 862 6.769822 AGATTATCAAAGGTATGCTGTTCCTG 59.230 38.462 0.00 0.00 0.00 3.86
792 863 6.904626 AGATTATCAAAGGTATGCTGTTCCT 58.095 36.000 0.00 0.00 0.00 3.36
793 864 7.573968 AAGATTATCAAAGGTATGCTGTTCC 57.426 36.000 0.00 0.00 0.00 3.62
794 865 8.677300 TCAAAGATTATCAAAGGTATGCTGTTC 58.323 33.333 0.00 0.00 0.00 3.18
795 866 8.579850 TCAAAGATTATCAAAGGTATGCTGTT 57.420 30.769 0.00 0.00 0.00 3.16
796 867 8.757982 ATCAAAGATTATCAAAGGTATGCTGT 57.242 30.769 0.00 0.00 0.00 4.40
797 868 8.295288 GGATCAAAGATTATCAAAGGTATGCTG 58.705 37.037 0.00 0.00 0.00 4.41
798 869 7.449704 GGGATCAAAGATTATCAAAGGTATGCT 59.550 37.037 0.00 0.00 0.00 3.79
799 870 7.449704 AGGGATCAAAGATTATCAAAGGTATGC 59.550 37.037 0.00 0.00 0.00 3.14
800 871 8.790718 CAGGGATCAAAGATTATCAAAGGTATG 58.209 37.037 0.00 0.00 0.00 2.39
801 872 8.727149 TCAGGGATCAAAGATTATCAAAGGTAT 58.273 33.333 0.00 0.00 0.00 2.73
802 873 8.101309 TCAGGGATCAAAGATTATCAAAGGTA 57.899 34.615 0.00 0.00 0.00 3.08
803 874 6.973642 TCAGGGATCAAAGATTATCAAAGGT 58.026 36.000 0.00 0.00 0.00 3.50
804 875 7.886629 TTCAGGGATCAAAGATTATCAAAGG 57.113 36.000 0.00 0.00 0.00 3.11
805 876 8.964772 ACTTTCAGGGATCAAAGATTATCAAAG 58.035 33.333 9.54 0.00 34.30 2.77
806 877 8.884124 ACTTTCAGGGATCAAAGATTATCAAA 57.116 30.769 9.54 0.00 34.30 2.69
807 878 8.884124 AACTTTCAGGGATCAAAGATTATCAA 57.116 30.769 9.54 0.00 34.30 2.57
808 879 8.884124 AAACTTTCAGGGATCAAAGATTATCA 57.116 30.769 9.54 0.00 34.30 2.15
809 880 9.183368 AGAAACTTTCAGGGATCAAAGATTATC 57.817 33.333 9.54 0.00 34.30 1.75
810 881 8.964772 CAGAAACTTTCAGGGATCAAAGATTAT 58.035 33.333 9.54 0.55 34.30 1.28
811 882 8.163408 TCAGAAACTTTCAGGGATCAAAGATTA 58.837 33.333 9.54 0.00 34.30 1.75
812 883 7.006509 TCAGAAACTTTCAGGGATCAAAGATT 58.993 34.615 9.54 4.84 34.30 2.40
813 884 6.546484 TCAGAAACTTTCAGGGATCAAAGAT 58.454 36.000 9.54 0.00 34.30 2.40
814 885 5.940617 TCAGAAACTTTCAGGGATCAAAGA 58.059 37.500 9.54 0.00 34.30 2.52
815 886 6.639632 TTCAGAAACTTTCAGGGATCAAAG 57.360 37.500 4.34 0.00 35.97 2.77
816 887 7.601705 AATTCAGAAACTTTCAGGGATCAAA 57.398 32.000 4.34 0.00 0.00 2.69
817 888 7.601705 AAATTCAGAAACTTTCAGGGATCAA 57.398 32.000 4.34 0.00 0.00 2.57
818 889 7.601705 AAAATTCAGAAACTTTCAGGGATCA 57.398 32.000 4.34 0.00 0.00 2.92
852 923 9.559732 CACCCTCATGAACAGTAAATTCATATA 57.440 33.333 0.00 0.00 43.39 0.86
853 924 8.055181 ACACCCTCATGAACAGTAAATTCATAT 58.945 33.333 0.00 0.00 43.39 1.78
854 925 7.402054 ACACCCTCATGAACAGTAAATTCATA 58.598 34.615 0.00 0.00 43.39 2.15
855 926 6.248433 ACACCCTCATGAACAGTAAATTCAT 58.752 36.000 0.00 0.00 45.57 2.57
856 927 5.630121 ACACCCTCATGAACAGTAAATTCA 58.370 37.500 0.00 0.00 40.25 2.57
857 928 6.316390 CCTACACCCTCATGAACAGTAAATTC 59.684 42.308 0.00 0.00 0.00 2.17
858 929 6.180472 CCTACACCCTCATGAACAGTAAATT 58.820 40.000 0.00 0.00 0.00 1.82
859 930 5.339200 CCCTACACCCTCATGAACAGTAAAT 60.339 44.000 0.00 0.00 0.00 1.40
860 931 4.019681 CCCTACACCCTCATGAACAGTAAA 60.020 45.833 0.00 0.00 0.00 2.01
861 932 3.517901 CCCTACACCCTCATGAACAGTAA 59.482 47.826 0.00 0.00 0.00 2.24
862 933 3.104512 CCCTACACCCTCATGAACAGTA 58.895 50.000 0.00 0.00 0.00 2.74
863 934 1.909302 CCCTACACCCTCATGAACAGT 59.091 52.381 0.00 0.00 0.00 3.55
864 935 1.210478 CCCCTACACCCTCATGAACAG 59.790 57.143 0.00 0.00 0.00 3.16
865 936 1.285280 CCCCTACACCCTCATGAACA 58.715 55.000 0.00 0.00 0.00 3.18
866 937 0.107165 GCCCCTACACCCTCATGAAC 60.107 60.000 0.00 0.00 0.00 3.18
867 938 0.548926 TGCCCCTACACCCTCATGAA 60.549 55.000 0.00 0.00 0.00 2.57
868 939 1.082019 TGCCCCTACACCCTCATGA 59.918 57.895 0.00 0.00 0.00 3.07
869 940 1.224592 GTGCCCCTACACCCTCATG 59.775 63.158 0.00 0.00 34.35 3.07
870 941 3.741325 GTGCCCCTACACCCTCAT 58.259 61.111 0.00 0.00 34.35 2.90
883 954 3.682292 CTAACAGCTCCCGGGTGCC 62.682 68.421 37.33 22.60 46.30 5.01
884 955 2.125106 CTAACAGCTCCCGGGTGC 60.125 66.667 35.10 35.10 46.30 5.01
886 957 0.617820 ATGTCTAACAGCTCCCGGGT 60.618 55.000 22.86 1.40 0.00 5.28
887 958 0.541863 AATGTCTAACAGCTCCCGGG 59.458 55.000 16.85 16.85 0.00 5.73
888 959 2.093447 AGAAATGTCTAACAGCTCCCGG 60.093 50.000 0.00 0.00 29.93 5.73
889 960 3.190874 GAGAAATGTCTAACAGCTCCCG 58.809 50.000 0.00 0.00 32.80 5.14
890 961 4.207891 TGAGAAATGTCTAACAGCTCCC 57.792 45.455 0.00 0.00 32.80 4.30
891 962 4.034975 GCATGAGAAATGTCTAACAGCTCC 59.965 45.833 0.00 0.00 32.80 4.70
892 963 4.633126 TGCATGAGAAATGTCTAACAGCTC 59.367 41.667 0.00 0.00 32.80 4.09
893 964 4.582869 TGCATGAGAAATGTCTAACAGCT 58.417 39.130 0.00 0.00 32.80 4.24
894 965 4.952262 TGCATGAGAAATGTCTAACAGC 57.048 40.909 0.00 0.00 32.80 4.40
895 966 6.673154 TGATGCATGAGAAATGTCTAACAG 57.327 37.500 2.46 0.00 32.80 3.16
896 967 7.121611 ACATTGATGCATGAGAAATGTCTAACA 59.878 33.333 2.46 0.00 36.94 2.41
897 968 7.431376 CACATTGATGCATGAGAAATGTCTAAC 59.569 37.037 2.46 0.00 38.94 2.34
898 969 7.337436 TCACATTGATGCATGAGAAATGTCTAA 59.663 33.333 2.46 1.23 38.94 2.10
899 970 6.824704 TCACATTGATGCATGAGAAATGTCTA 59.175 34.615 2.46 3.39 38.94 2.59
900 971 5.650703 TCACATTGATGCATGAGAAATGTCT 59.349 36.000 2.46 0.00 38.94 3.41
901 972 5.886992 TCACATTGATGCATGAGAAATGTC 58.113 37.500 2.46 0.00 38.94 3.06
902 973 5.163550 CCTCACATTGATGCATGAGAAATGT 60.164 40.000 2.46 11.79 40.92 2.71
903 974 5.163550 ACCTCACATTGATGCATGAGAAATG 60.164 40.000 2.46 11.16 40.92 2.32
904 975 4.954202 ACCTCACATTGATGCATGAGAAAT 59.046 37.500 2.46 0.00 40.92 2.17
905 976 4.338012 ACCTCACATTGATGCATGAGAAA 58.662 39.130 2.46 0.00 40.92 2.52
906 977 3.959293 ACCTCACATTGATGCATGAGAA 58.041 40.909 2.46 0.00 40.92 2.87
907 978 3.639672 ACCTCACATTGATGCATGAGA 57.360 42.857 2.46 0.00 40.92 3.27
908 979 3.181490 CCAACCTCACATTGATGCATGAG 60.181 47.826 2.46 4.64 38.65 2.90
909 980 2.756207 CCAACCTCACATTGATGCATGA 59.244 45.455 2.46 0.00 0.00 3.07
910 981 2.756207 TCCAACCTCACATTGATGCATG 59.244 45.455 2.46 0.00 0.00 4.06
1104 1203 5.768980 ACTTCTGGGTATCATCCATATGG 57.231 43.478 16.25 16.25 33.29 2.74
1158 1257 1.067516 CCAGGGCTTGCCATTTTATCG 59.932 52.381 14.04 0.00 0.00 2.92
1318 1418 2.092968 TGTTTCCATCAGGCGCTTCTAT 60.093 45.455 7.64 0.00 33.74 1.98
1369 1469 3.323403 CCAGATCCCAGGACTATCTTGTC 59.677 52.174 0.00 0.00 36.31 3.18
1416 1516 5.243730 CAGGAAATTGCCCTCTTTTACTTCA 59.756 40.000 0.00 0.00 0.00 3.02
1540 1640 6.493115 TGAATGTCTTTTTCTTGGGCATTAGA 59.507 34.615 0.00 0.00 0.00 2.10
1704 1804 1.468520 CGGAAATCGCCAAACATGAGT 59.531 47.619 0.00 0.00 0.00 3.41
2171 3505 3.242268 CGTGATTCGCAGTCTCGAT 57.758 52.632 0.00 0.00 38.37 3.59
2453 3953 0.814010 ACTTTCCTCACAAGCGCGTT 60.814 50.000 8.43 0.00 0.00 4.84
3129 4807 2.158842 CCCTGCAAAAACACAAATGGGA 60.159 45.455 0.00 0.00 34.34 4.37
3145 4831 1.134551 AGATTCGAGCTCTTTCCCTGC 60.135 52.381 12.85 0.00 0.00 4.85
3210 4896 1.613925 TGTTCCTTGTCACTCTCCTCG 59.386 52.381 0.00 0.00 0.00 4.63
3233 4919 6.433404 CCTTGAGTAGTAGTAGTTGGACTCAA 59.567 42.308 15.99 15.99 46.33 3.02
3308 5000 2.450476 GATTGCCCTGTTGGATCAACT 58.550 47.619 11.36 0.00 43.85 3.16
3343 5035 1.589414 AGGTGATTCTTCCCCAGGAG 58.411 55.000 0.00 0.00 31.21 3.69
3361 5053 5.979517 CCAGCAAGTTGTTCCTCTTTTTAAG 59.020 40.000 4.48 0.00 0.00 1.85
3390 5082 5.869888 GTCTGTCATTACTAGAACAACTGGG 59.130 44.000 0.00 0.00 0.00 4.45
3391 5083 6.587990 CAGTCTGTCATTACTAGAACAACTGG 59.412 42.308 0.00 0.00 0.00 4.00
3403 5095 9.900710 CATCTAGGTATTACAGTCTGTCATTAC 57.099 37.037 9.26 9.55 0.00 1.89
3408 5100 5.536916 AGCCATCTAGGTATTACAGTCTGTC 59.463 44.000 9.26 0.00 40.61 3.51
3417 5109 5.670361 AGTTTCCCAAGCCATCTAGGTATTA 59.330 40.000 0.00 0.00 40.61 0.98
3431 5123 4.156739 GTCTATCAAAGGCAGTTTCCCAAG 59.843 45.833 0.00 0.00 0.00 3.61
3434 5126 3.686016 TGTCTATCAAAGGCAGTTTCCC 58.314 45.455 0.00 0.00 33.94 3.97
3443 5135 6.035435 CGACAGTTCAGAATGTCTATCAAAGG 59.965 42.308 16.90 3.43 42.93 3.11
3470 5163 4.077108 TCACTAGGACAGAAAGCTTCGTA 58.923 43.478 0.00 0.00 34.02 3.43
3485 5178 6.573434 TGCATACAGAACATTAGTCACTAGG 58.427 40.000 0.00 0.00 0.00 3.02
3517 5220 3.000727 GCTTAGCCGCAAACTTTCTAGA 58.999 45.455 0.00 0.00 0.00 2.43
3546 5249 0.176680 GGATGTCATGTGACCTCGCT 59.823 55.000 10.40 0.00 44.15 4.93
3578 5281 1.569072 ACCACTTCTTTCCCCTGTTGT 59.431 47.619 0.00 0.00 0.00 3.32
3627 5330 1.073284 GGACTGTTGCAGAAACCCCTA 59.927 52.381 2.91 0.00 38.06 3.53
3637 5346 0.184692 TTGGTCCATGGACTGTTGCA 59.815 50.000 37.26 25.85 44.04 4.08
3722 5431 3.496130 GTGGACAATCATCATCGCCTTAG 59.504 47.826 0.00 0.00 0.00 2.18
3773 5482 2.100584 CTGGCTAGTTAGTCCAGCAGAG 59.899 54.545 13.11 0.00 39.19 3.35
3792 5501 5.071370 AGGATACATCTACGTAGGAACCTG 58.929 45.833 22.01 13.54 41.41 4.00
3801 5510 6.777213 AAACTCAGAAGGATACATCTACGT 57.223 37.500 0.00 0.00 44.25 3.57
3807 5516 6.262496 TCGACGATAAACTCAGAAGGATACAT 59.738 38.462 0.00 0.00 41.41 2.29
3821 5530 7.148689 ACAGGTTTCAGTAATTCGACGATAAAC 60.149 37.037 0.00 0.00 0.00 2.01
3825 5534 4.817517 ACAGGTTTCAGTAATTCGACGAT 58.182 39.130 0.00 0.00 0.00 3.73
3830 5539 3.252215 TGGCAACAGGTTTCAGTAATTCG 59.748 43.478 0.00 0.00 46.17 3.34
3892 5608 5.196341 TCTACTGGAACCATATTAGTGCG 57.804 43.478 0.00 0.00 0.00 5.34
4129 5888 8.705048 AGTTACAAGCTACAACTTCTATTAGC 57.295 34.615 0.00 0.00 37.76 3.09
4147 5914 8.516234 AGTTAAACATGAACACACAAGTTACAA 58.484 29.630 0.00 0.00 32.67 2.41
4172 5939 1.135333 GGAGAACCTCCTACTGCGAAG 59.865 57.143 5.78 0.00 46.41 3.79
4278 6045 2.719739 CCAGAACCAGATCACTGCAAT 58.280 47.619 0.00 0.00 42.25 3.56
4353 6132 8.547965 GGACCTTCCTTACAGTTTTTCTGTCAA 61.548 40.741 3.73 0.00 43.78 3.18
4354 6133 7.133824 GGACCTTCCTTACAGTTTTTCTGTCA 61.134 42.308 3.73 0.00 43.78 3.58
4355 6134 5.238868 GGACCTTCCTTACAGTTTTTCTGTC 59.761 44.000 3.73 0.00 43.78 3.51
4356 6135 5.131067 GGACCTTCCTTACAGTTTTTCTGT 58.869 41.667 5.82 5.82 45.31 3.41
4357 6136 4.519350 GGGACCTTCCTTACAGTTTTTCTG 59.481 45.833 0.00 0.00 42.15 3.02
4358 6137 4.415846 AGGGACCTTCCTTACAGTTTTTCT 59.584 41.667 0.00 0.00 36.57 2.52
4359 6138 4.726583 AGGGACCTTCCTTACAGTTTTTC 58.273 43.478 0.00 0.00 36.57 2.29
4360 6139 4.808767 AGGGACCTTCCTTACAGTTTTT 57.191 40.909 0.00 0.00 36.57 1.94
4361 6140 5.238624 GTAGGGACCTTCCTTACAGTTTT 57.761 43.478 9.10 0.00 45.36 2.43
4362 6141 4.904895 GTAGGGACCTTCCTTACAGTTT 57.095 45.455 9.10 0.00 45.36 2.66
4367 6146 2.830293 ACCTGTAGGGACCTTCCTTAC 58.170 52.381 7.40 7.40 45.99 2.34
4368 6147 3.599698 ACTACCTGTAGGGACCTTCCTTA 59.400 47.826 9.03 0.00 40.27 2.69
4369 6148 2.386113 ACTACCTGTAGGGACCTTCCTT 59.614 50.000 9.03 0.00 40.27 3.36
4370 6149 2.009165 ACTACCTGTAGGGACCTTCCT 58.991 52.381 9.03 0.00 40.27 3.36
4371 6150 2.500504 CAACTACCTGTAGGGACCTTCC 59.499 54.545 9.03 0.00 40.27 3.46
4372 6151 2.093606 GCAACTACCTGTAGGGACCTTC 60.094 54.545 9.03 0.00 40.27 3.46
4373 6152 1.907255 GCAACTACCTGTAGGGACCTT 59.093 52.381 9.03 0.00 40.27 3.50
4374 6153 1.203262 TGCAACTACCTGTAGGGACCT 60.203 52.381 9.03 0.00 40.27 3.85
4375 6154 1.272807 TGCAACTACCTGTAGGGACC 58.727 55.000 9.03 0.00 40.27 4.46
4376 6155 2.038033 TGTTGCAACTACCTGTAGGGAC 59.962 50.000 28.61 0.00 40.27 4.46
4377 6156 2.331166 TGTTGCAACTACCTGTAGGGA 58.669 47.619 28.61 2.43 40.27 4.20
4378 6157 2.851263 TGTTGCAACTACCTGTAGGG 57.149 50.000 28.61 2.35 40.27 3.53
4379 6158 4.323417 TGAATGTTGCAACTACCTGTAGG 58.677 43.478 28.61 0.00 37.49 3.18
4380 6159 4.142816 GCTGAATGTTGCAACTACCTGTAG 60.143 45.833 28.61 17.50 39.04 2.74
4381 6160 3.751175 GCTGAATGTTGCAACTACCTGTA 59.249 43.478 28.61 8.52 0.00 2.74
4382 6161 2.554032 GCTGAATGTTGCAACTACCTGT 59.446 45.455 28.61 8.73 0.00 4.00
4383 6162 2.553602 TGCTGAATGTTGCAACTACCTG 59.446 45.455 28.61 19.68 36.15 4.00
4384 6163 2.862541 TGCTGAATGTTGCAACTACCT 58.137 42.857 28.61 11.44 36.15 3.08
4385 6164 3.504863 CATGCTGAATGTTGCAACTACC 58.495 45.455 28.61 17.31 42.74 3.18
4386 6165 3.504863 CCATGCTGAATGTTGCAACTAC 58.495 45.455 28.61 19.19 42.74 2.73
4387 6166 2.094597 GCCATGCTGAATGTTGCAACTA 60.095 45.455 28.61 16.22 42.74 2.24
4388 6167 1.337447 GCCATGCTGAATGTTGCAACT 60.337 47.619 28.61 11.16 42.74 3.16
4389 6168 1.073177 GCCATGCTGAATGTTGCAAC 58.927 50.000 22.83 22.83 42.74 4.17
4390 6169 0.970640 AGCCATGCTGAATGTTGCAA 59.029 45.000 0.00 0.00 42.74 4.08
4396 6175 2.953648 TCACCATAAGCCATGCTGAATG 59.046 45.455 0.00 0.00 39.62 2.67
4497 6280 8.075761 ACCGGAGATACTAATTCTTACTTTGT 57.924 34.615 9.46 0.00 0.00 2.83
4553 6336 9.715121 ATTTGCTTCACATATTTCTGAATTTGT 57.285 25.926 0.00 0.00 37.75 2.83
4560 6343 5.870433 TGCCAATTTGCTTCACATATTTCTG 59.130 36.000 2.90 0.00 28.66 3.02
4561 6344 6.040209 TGCCAATTTGCTTCACATATTTCT 57.960 33.333 2.90 0.00 28.66 2.52
4586 6369 4.083537 TGTTTATGTTGTGATCGGCAACTC 60.084 41.667 24.00 14.19 44.54 3.01
4628 6411 6.919115 TGTTTTCATTGCCATCGATGAATATG 59.081 34.615 26.86 22.04 46.80 1.78
4629 6412 7.041635 TGTTTTCATTGCCATCGATGAATAT 57.958 32.000 26.86 12.69 46.80 1.28
4635 6418 8.034215 TCTAAATTTGTTTTCATTGCCATCGAT 58.966 29.630 0.00 0.00 0.00 3.59
4703 6602 1.571919 GCGACACCACTAAGCTATGG 58.428 55.000 9.49 9.49 42.13 2.74
4705 6604 0.464452 GGGCGACACCACTAAGCTAT 59.536 55.000 0.00 0.00 42.05 2.97
4751 6650 3.514645 TGTTAGACGCTAATTTCGACCC 58.485 45.455 6.77 0.00 0.00 4.46
4752 6651 5.519206 AGAATGTTAGACGCTAATTTCGACC 59.481 40.000 6.77 0.00 0.00 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.