Multiple sequence alignment - TraesCS5D01G077900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G077900 chr5D 100.000 6178 0 0 1 6178 77735145 77741322 0.000000e+00 11409.0
1 TraesCS5D01G077900 chr5D 90.866 1062 90 6 2564 3624 78010985 78012040 0.000000e+00 1417.0
2 TraesCS5D01G077900 chr5D 80.556 1692 236 58 3751 5390 78054102 78055752 0.000000e+00 1216.0
3 TraesCS5D01G077900 chr5D 87.677 990 112 8 2564 3547 78053063 78054048 0.000000e+00 1144.0
4 TraesCS5D01G077900 chr5D 83.561 1247 158 21 3748 4982 78012043 78013254 0.000000e+00 1123.0
5 TraesCS5D01G077900 chr5D 92.341 457 34 1 2108 2563 78052552 78053008 0.000000e+00 649.0
6 TraesCS5D01G077900 chr5D 89.912 456 43 3 2110 2563 78010476 78010930 8.920000e-163 584.0
7 TraesCS5D01G077900 chr5D 85.000 300 24 10 259 544 78008056 78008348 1.010000e-72 285.0
8 TraesCS5D01G077900 chr5D 90.566 212 16 1 1901 2108 78052272 78052483 1.700000e-70 278.0
9 TraesCS5D01G077900 chr5D 82.353 119 17 3 705 821 78051451 78051567 3.940000e-17 100.0
10 TraesCS5D01G077900 chr5D 83.333 84 10 2 1573 1656 76996926 76996847 2.390000e-09 75.0
11 TraesCS5D01G077900 chr5D 96.875 32 1 0 1458 1489 78009667 78009698 3.000000e-03 54.7
12 TraesCS5D01G077900 chr5A 95.724 3555 130 12 1458 4997 74495512 74499059 0.000000e+00 5703.0
13 TraesCS5D01G077900 chr5A 93.160 1228 42 10 4984 6178 74499081 74500299 0.000000e+00 1764.0
14 TraesCS5D01G077900 chr5A 90.084 1069 96 8 2564 3629 74590826 74591887 0.000000e+00 1378.0
15 TraesCS5D01G077900 chr5A 85.782 1259 130 28 3751 4982 74591888 74593124 0.000000e+00 1288.0
16 TraesCS5D01G077900 chr5A 87.386 991 113 9 2564 3547 74672723 74673708 0.000000e+00 1127.0
17 TraesCS5D01G077900 chr5A 81.759 1376 175 43 3751 5084 74673766 74675107 0.000000e+00 1081.0
18 TraesCS5D01G077900 chr5A 88.663 688 19 25 623 1294 74494874 74495518 0.000000e+00 784.0
19 TraesCS5D01G077900 chr5A 98.082 417 7 1 222 638 74494435 74494850 0.000000e+00 725.0
20 TraesCS5D01G077900 chr5A 91.904 457 36 1 2108 2563 74672212 74672668 6.750000e-179 638.0
21 TraesCS5D01G077900 chr5A 94.811 212 7 1 12 223 74494033 74494240 1.660000e-85 327.0
22 TraesCS5D01G077900 chr5A 81.132 318 21 13 259 544 74588679 74588989 1.040000e-52 219.0
23 TraesCS5D01G077900 chr5A 94.815 135 7 0 1291 1425 59016590 59016724 1.740000e-50 211.0
24 TraesCS5D01G077900 chr5A 82.243 107 18 1 730 835 74671141 74671247 2.370000e-14 91.6
25 TraesCS5D01G077900 chr5A 83.117 77 5 2 5776 5847 74594808 74594881 5.170000e-06 63.9
26 TraesCS5D01G077900 chr5B 94.738 3497 129 24 2725 6178 87292924 87296408 0.000000e+00 5387.0
27 TraesCS5D01G077900 chr5B 92.711 1317 47 10 1458 2738 87290402 87291705 0.000000e+00 1855.0
28 TraesCS5D01G077900 chr5B 91.055 1062 90 5 2564 3624 87651093 87652150 0.000000e+00 1430.0
29 TraesCS5D01G077900 chr5B 88.271 989 108 7 2564 3547 87765305 87766290 0.000000e+00 1177.0
30 TraesCS5D01G077900 chr5B 83.907 1249 148 21 3752 4982 87652157 87653370 0.000000e+00 1144.0
31 TraesCS5D01G077900 chr5B 79.754 1704 246 58 3751 5404 87970365 87972019 0.000000e+00 1144.0
32 TraesCS5D01G077900 chr5B 82.496 1314 176 33 3751 5030 87766348 87767641 0.000000e+00 1103.0
33 TraesCS5D01G077900 chr5B 91.517 613 21 10 699 1294 87289810 87290408 0.000000e+00 815.0
34 TraesCS5D01G077900 chr5B 88.218 679 73 6 2564 3240 87969131 87969804 0.000000e+00 804.0
35 TraesCS5D01G077900 chr5B 94.676 432 13 7 250 680 87288305 87288727 0.000000e+00 662.0
36 TraesCS5D01G077900 chr5B 91.685 457 37 1 2108 2563 87764794 87765250 3.140000e-177 632.0
37 TraesCS5D01G077900 chr5B 91.028 457 40 1 2108 2563 87968620 87969076 3.160000e-172 616.0
38 TraesCS5D01G077900 chr5B 89.301 458 46 3 2108 2563 87650582 87651038 6.950000e-159 571.0
39 TraesCS5D01G077900 chr5B 77.495 1022 126 48 259 1223 87648893 87649867 9.180000e-143 518.0
40 TraesCS5D01G077900 chr5B 87.023 393 44 3 3244 3629 87969972 87970364 2.640000e-118 436.0
41 TraesCS5D01G077900 chr5B 89.151 212 18 2 1901 2108 87968341 87968551 6.140000e-65 259.0
42 TraesCS5D01G077900 chr5B 97.479 119 2 1 3633 3750 533062440 533062322 1.050000e-47 202.0
43 TraesCS5D01G077900 chr5B 93.798 129 6 2 3633 3759 567266270 567266398 6.320000e-45 193.0
44 TraesCS5D01G077900 chr5B 85.606 132 14 4 1780 1906 87968185 87968316 3.890000e-27 134.0
45 TraesCS5D01G077900 chr5B 76.404 267 39 12 5927 6171 87768642 87768906 8.410000e-24 122.0
46 TraesCS5D01G077900 chr5B 89.041 73 8 0 719 791 87967544 87967616 2.370000e-14 91.6
47 TraesCS5D01G077900 chr5B 83.516 91 9 4 1567 1656 85905745 85905660 5.130000e-11 80.5
48 TraesCS5D01G077900 chr5B 97.143 35 1 0 1294 1328 598752572 598752606 6.690000e-05 60.2
49 TraesCS5D01G077900 chr5B 89.583 48 2 1 1458 1502 87650152 87650199 2.410000e-04 58.4
50 TraesCS5D01G077900 chr1D 88.172 186 21 1 2116 2300 16106924 16106739 2.900000e-53 220.0
51 TraesCS5D01G077900 chr6B 90.854 164 14 1 1295 1457 57136449 57136286 1.040000e-52 219.0
52 TraesCS5D01G077900 chr1B 89.881 168 12 2 1295 1457 662832596 662832429 1.740000e-50 211.0
53 TraesCS5D01G077900 chr6D 97.479 119 2 1 3633 3750 168771116 168770998 1.050000e-47 202.0
54 TraesCS5D01G077900 chr6A 97.479 119 2 1 3633 3750 608878910 608879028 1.050000e-47 202.0
55 TraesCS5D01G077900 chr2B 97.479 119 2 1 3633 3750 30666287 30666405 1.050000e-47 202.0
56 TraesCS5D01G077900 chr1A 97.479 119 2 1 3633 3750 238113269 238113151 1.050000e-47 202.0
57 TraesCS5D01G077900 chr3D 93.798 129 6 2 3633 3759 213410673 213410801 6.320000e-45 193.0
58 TraesCS5D01G077900 chr2D 91.667 120 6 4 1340 1457 602786352 602786235 4.960000e-36 163.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G077900 chr5D 77735145 77741322 6177 False 11409.000 11409 100.000000 1 6178 1 chr5D.!!$F1 6177
1 TraesCS5D01G077900 chr5D 78008056 78013254 5198 False 692.740 1417 89.242800 259 4982 5 chr5D.!!$F2 4723
2 TraesCS5D01G077900 chr5D 78051451 78055752 4301 False 677.400 1216 86.698600 705 5390 5 chr5D.!!$F3 4685
3 TraesCS5D01G077900 chr5A 74494033 74500299 6266 False 1860.600 5703 94.088000 12 6178 5 chr5A.!!$F2 6166
4 TraesCS5D01G077900 chr5A 74588679 74594881 6202 False 737.225 1378 85.028750 259 5847 4 chr5A.!!$F3 5588
5 TraesCS5D01G077900 chr5A 74671141 74675107 3966 False 734.400 1127 85.823000 730 5084 4 chr5A.!!$F4 4354
6 TraesCS5D01G077900 chr5B 87288305 87296408 8103 False 2179.750 5387 93.410500 250 6178 4 chr5B.!!$F3 5928
7 TraesCS5D01G077900 chr5B 87764794 87768906 4112 False 758.500 1177 84.714000 2108 6171 4 chr5B.!!$F5 4063
8 TraesCS5D01G077900 chr5B 87648893 87653370 4477 False 744.280 1430 86.268200 259 4982 5 chr5B.!!$F4 4723
9 TraesCS5D01G077900 chr5B 87967544 87972019 4475 False 497.800 1144 87.117286 719 5404 7 chr5B.!!$F6 4685

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
858 2645 0.911769 CCCTCTGGGTATTGCTGTGA 59.088 55.000 0.00 0.0 38.25 3.58 F
1102 2970 0.457166 CATCGTTGGCATTGTGGCTG 60.457 55.000 5.12 0.0 44.10 4.85 F
1453 3336 0.539051 ATCTTCCTGGTCTTGCTCCG 59.461 55.000 0.00 0.0 0.00 4.63 F
2549 5091 1.033746 CATGAACTGCGGCCCTGATT 61.034 55.000 0.00 0.0 0.00 2.57 F
3298 7296 0.861837 GTGAAGCAGAAGGTGTCACG 59.138 55.000 0.00 0.0 0.00 4.35 F
3382 7380 1.303317 AACGGGGTGCAATCTGACC 60.303 57.895 0.00 0.0 0.00 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2422 4964 1.015109 GGAAGTAGCCCGCTTTTAGC 58.985 55.000 0.00 0.00 38.02 3.09 R
2770 6599 1.677576 TGCTCTGCAGGAACAAACAAG 59.322 47.619 15.13 1.06 33.32 3.16 R
3176 7009 0.112606 TCGGTGAAGGAGAGTCCACT 59.887 55.000 0.00 0.00 39.61 4.00 R
3382 7380 0.873054 CTTCTGCCTTCTGTGCTGTG 59.127 55.000 0.00 0.00 0.00 3.66 R
4744 8798 2.104963 AGAGACAAACTTGGTCCAGGAC 59.895 50.000 11.70 11.70 35.89 3.85 R
5315 9540 0.244721 GCCAAAGAAGCCGCAAGAAT 59.755 50.000 0.00 0.00 43.02 2.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 4.204028 GGTGGGCCATATGCGGGT 62.204 66.667 10.70 0.00 42.61 5.28
107 108 7.442666 GGTACTTCCTCATCCACAATAAATCTC 59.557 40.741 0.00 0.00 0.00 2.75
122 123 1.156736 ATCTCGCAGTTTTGAACCGG 58.843 50.000 0.00 0.00 0.00 5.28
135 136 6.266786 AGTTTTGAACCGGGATTAGATTTTGT 59.733 34.615 6.32 0.00 0.00 2.83
138 139 7.948034 TTGAACCGGGATTAGATTTTGTATT 57.052 32.000 6.32 0.00 0.00 1.89
185 186 9.849166 TTTTAGACAAAAAGTTGAACTTAGTGG 57.151 29.630 11.43 2.99 37.47 4.00
671 1412 5.578727 TGTTTGTTATTTTGTGTGTGCCTTC 59.421 36.000 0.00 0.00 0.00 3.46
784 2526 7.831753 TGTGTTGATCTTTCTTGTGGTTTTTA 58.168 30.769 0.00 0.00 0.00 1.52
796 2549 4.465886 TGTGGTTTTTACTATGGCACTGT 58.534 39.130 0.00 0.00 0.00 3.55
797 2550 4.517453 TGTGGTTTTTACTATGGCACTGTC 59.483 41.667 0.00 0.00 0.00 3.51
803 2556 0.914644 ACTATGGCACTGTCCTGCAT 59.085 50.000 0.00 0.00 39.08 3.96
810 2563 1.162698 CACTGTCCTGCATCACAAGG 58.837 55.000 0.00 0.00 0.00 3.61
821 2575 3.257393 GCATCACAAGGTACTGACAGAG 58.743 50.000 10.08 0.00 40.86 3.35
823 2577 4.800914 GCATCACAAGGTACTGACAGAGTT 60.801 45.833 10.08 0.00 40.86 3.01
824 2578 5.566826 GCATCACAAGGTACTGACAGAGTTA 60.567 44.000 10.08 0.00 40.86 2.24
858 2645 0.911769 CCCTCTGGGTATTGCTGTGA 59.088 55.000 0.00 0.00 38.25 3.58
878 2668 4.287067 GTGATCCCTTATCTCCTTGGCATA 59.713 45.833 0.00 0.00 35.45 3.14
924 2742 3.055530 TCTGCTCAGATTCCAGAAGTTCC 60.056 47.826 0.00 0.00 33.05 3.62
985 2811 7.039882 AGACTTTTCACGTGAGACTCTTTTTA 58.960 34.615 19.11 0.00 0.00 1.52
991 2818 8.882415 TTCACGTGAGACTCTTTTTATAGTTT 57.118 30.769 19.11 0.00 0.00 2.66
1042 2889 2.489329 GCATCAGCTTGTATGGTGTGTT 59.511 45.455 0.00 0.00 37.91 3.32
1100 2968 1.806758 GCATCGTTGGCATTGTGGC 60.807 57.895 0.00 0.00 44.03 5.01
1101 2969 1.885157 CATCGTTGGCATTGTGGCT 59.115 52.632 5.12 0.00 44.10 4.75
1102 2970 0.457166 CATCGTTGGCATTGTGGCTG 60.457 55.000 5.12 0.00 44.10 4.85
1103 2971 1.597797 ATCGTTGGCATTGTGGCTGG 61.598 55.000 5.12 0.00 44.10 4.85
1104 2972 2.047939 GTTGGCATTGTGGCTGGC 60.048 61.111 5.12 0.00 44.10 4.85
1105 2973 2.203669 TTGGCATTGTGGCTGGCT 60.204 55.556 2.00 0.00 44.10 4.75
1106 2974 2.575893 TTGGCATTGTGGCTGGCTG 61.576 57.895 2.00 0.00 44.10 4.85
1107 2975 4.446413 GGCATTGTGGCTGGCTGC 62.446 66.667 7.96 7.96 40.14 5.25
1136 3012 6.142818 TCTCTGCAGAAGTATTAGCTCTTC 57.857 41.667 18.85 5.03 39.93 2.87
1290 3173 9.970395 TTTTTCTGACATCAAATATATGCATCC 57.030 29.630 0.19 0.00 0.00 3.51
1291 3174 8.694581 TTTCTGACATCAAATATATGCATCCA 57.305 30.769 0.19 0.00 0.00 3.41
1292 3175 8.873186 TTCTGACATCAAATATATGCATCCAT 57.127 30.769 0.19 0.00 35.44 3.41
1293 3176 8.276252 TCTGACATCAAATATATGCATCCATG 57.724 34.615 0.19 0.00 32.85 3.66
1303 3186 2.124612 CATCCATGCACTGGCGGA 60.125 61.111 0.00 2.43 45.52 5.54
1304 3187 2.184830 CATCCATGCACTGGCGGAG 61.185 63.158 0.00 0.00 45.52 4.63
1317 3200 4.368391 CGGAGCTATGTGCATCCC 57.632 61.111 0.00 0.00 45.94 3.85
1318 3201 1.750930 CGGAGCTATGTGCATCCCT 59.249 57.895 0.00 0.00 45.94 4.20
1319 3202 0.602106 CGGAGCTATGTGCATCCCTG 60.602 60.000 0.00 0.00 45.94 4.45
1329 3212 2.277737 CATCCCTGCAGGTGCCAT 59.722 61.111 30.63 14.09 41.18 4.40
1330 3213 2.125326 CATCCCTGCAGGTGCCATG 61.125 63.158 30.63 20.92 41.18 3.66
1331 3214 3.369410 ATCCCTGCAGGTGCCATGG 62.369 63.158 30.63 13.94 41.18 3.66
1337 3220 4.828296 CAGGTGCCATGGCCCTCC 62.828 72.222 32.34 28.90 38.90 4.30
1358 3241 4.599047 CCAACCTTGGCAAATTTAGTGA 57.401 40.909 0.00 0.00 42.21 3.41
1359 3242 4.954875 CCAACCTTGGCAAATTTAGTGAA 58.045 39.130 0.00 0.00 42.21 3.18
1360 3243 4.990426 CCAACCTTGGCAAATTTAGTGAAG 59.010 41.667 0.00 0.00 42.21 3.02
1361 3244 5.221422 CCAACCTTGGCAAATTTAGTGAAGA 60.221 40.000 0.00 0.00 42.21 2.87
1362 3245 6.279882 CAACCTTGGCAAATTTAGTGAAGAA 58.720 36.000 0.00 0.00 0.00 2.52
1363 3246 6.478512 ACCTTGGCAAATTTAGTGAAGAAA 57.521 33.333 0.00 0.00 0.00 2.52
1364 3247 7.066307 ACCTTGGCAAATTTAGTGAAGAAAT 57.934 32.000 0.00 0.00 0.00 2.17
1365 3248 7.508687 ACCTTGGCAAATTTAGTGAAGAAATT 58.491 30.769 0.00 0.00 37.96 1.82
1366 3249 7.992608 ACCTTGGCAAATTTAGTGAAGAAATTT 59.007 29.630 0.00 0.00 43.77 1.82
1367 3250 8.839343 CCTTGGCAAATTTAGTGAAGAAATTTT 58.161 29.630 0.00 0.00 41.48 1.82
1420 3303 8.825667 AGAGATGTTTTCTACTGTCTTTTCTC 57.174 34.615 0.00 0.00 33.74 2.87
1421 3304 8.646900 AGAGATGTTTTCTACTGTCTTTTCTCT 58.353 33.333 0.00 0.00 33.74 3.10
1422 3305 9.267084 GAGATGTTTTCTACTGTCTTTTCTCTT 57.733 33.333 0.00 0.00 33.74 2.85
1423 3306 9.620259 AGATGTTTTCTACTGTCTTTTCTCTTT 57.380 29.630 0.00 0.00 30.96 2.52
1424 3307 9.657121 GATGTTTTCTACTGTCTTTTCTCTTTG 57.343 33.333 0.00 0.00 0.00 2.77
1425 3308 7.985476 TGTTTTCTACTGTCTTTTCTCTTTGG 58.015 34.615 0.00 0.00 0.00 3.28
1426 3309 6.619801 TTTCTACTGTCTTTTCTCTTTGGC 57.380 37.500 0.00 0.00 0.00 4.52
1427 3310 4.642429 TCTACTGTCTTTTCTCTTTGGCC 58.358 43.478 0.00 0.00 0.00 5.36
1428 3311 2.587522 ACTGTCTTTTCTCTTTGGCCC 58.412 47.619 0.00 0.00 0.00 5.80
1429 3312 1.889170 CTGTCTTTTCTCTTTGGCCCC 59.111 52.381 0.00 0.00 0.00 5.80
1430 3313 1.257743 GTCTTTTCTCTTTGGCCCCC 58.742 55.000 0.00 0.00 0.00 5.40
1446 3329 2.715295 CCCCCAATCTTCCTGGTCT 58.285 57.895 0.00 0.00 31.45 3.85
1447 3330 1.002857 CCCCCAATCTTCCTGGTCTT 58.997 55.000 0.00 0.00 31.45 3.01
1448 3331 1.341383 CCCCCAATCTTCCTGGTCTTG 60.341 57.143 0.00 0.00 31.45 3.02
1449 3332 1.467920 CCCAATCTTCCTGGTCTTGC 58.532 55.000 0.00 0.00 31.45 4.01
1450 3333 1.005215 CCCAATCTTCCTGGTCTTGCT 59.995 52.381 0.00 0.00 31.45 3.91
1451 3334 2.363683 CCAATCTTCCTGGTCTTGCTC 58.636 52.381 0.00 0.00 0.00 4.26
1452 3335 2.363683 CAATCTTCCTGGTCTTGCTCC 58.636 52.381 0.00 0.00 0.00 4.70
1453 3336 0.539051 ATCTTCCTGGTCTTGCTCCG 59.461 55.000 0.00 0.00 0.00 4.63
1454 3337 1.743252 CTTCCTGGTCTTGCTCCGC 60.743 63.158 0.00 0.00 0.00 5.54
1455 3338 3.254024 TTCCTGGTCTTGCTCCGCC 62.254 63.158 0.00 0.00 0.00 6.13
1456 3339 4.020617 CCTGGTCTTGCTCCGCCA 62.021 66.667 0.00 0.00 0.00 5.69
1552 3497 1.304052 TTGGGGTTTCCGCATCCTG 60.304 57.895 6.38 0.00 45.64 3.86
1571 3516 3.072184 CCTGGGCATATAGACTGCTTCTT 59.928 47.826 0.00 0.00 39.60 2.52
1592 3537 6.855836 TCTTTGCATAAGTATTGGCTTCTTG 58.144 36.000 0.00 0.00 32.02 3.02
1728 3688 6.820656 AGTGCATAGTTCTATTTGTCCTGAAG 59.179 38.462 0.00 0.00 0.00 3.02
1874 3905 8.821817 AGAGGCTTCTTCTTTTTCTACTAGATT 58.178 33.333 0.00 0.00 0.00 2.40
2188 4728 2.044053 GGCAAGCCCTGGTGCATA 60.044 61.111 9.61 0.00 42.74 3.14
2422 4964 6.627243 GGGGGTATTTGTAAGCTTTTACAAG 58.373 40.000 3.20 0.00 44.97 3.16
2503 5045 9.696917 GTTCTGATATTTGATTTTGGAACTTGT 57.303 29.630 0.00 0.00 0.00 3.16
2546 5088 2.046023 TCATGAACTGCGGCCCTG 60.046 61.111 0.00 0.00 0.00 4.45
2549 5091 1.033746 CATGAACTGCGGCCCTGATT 61.034 55.000 0.00 0.00 0.00 2.57
2665 5261 1.077212 CCTGAGGCTCATGGTTGGG 60.077 63.158 19.11 10.76 0.00 4.12
2924 6757 4.153371 AGTCCTTAGATATGGATGGGCT 57.847 45.455 0.00 0.00 34.58 5.19
2943 6776 3.378339 GCTGCATTTGCCAGTGATTATC 58.622 45.455 0.00 0.00 41.18 1.75
3081 6914 6.127366 CCATGCTCCTAATGTACCAAAAACAT 60.127 38.462 0.00 0.00 39.22 2.71
3176 7009 8.437575 AGTAGGAAAACTAAAAAGATGACTCCA 58.562 33.333 0.00 0.00 32.37 3.86
3233 7066 5.543507 TGAAGGGTTGCATGTACATTTTT 57.456 34.783 5.37 0.00 0.00 1.94
3282 7280 1.905894 TCTTGATGATCGGGGTTGTGA 59.094 47.619 0.00 0.00 0.00 3.58
3298 7296 0.861837 GTGAAGCAGAAGGTGTCACG 59.138 55.000 0.00 0.00 0.00 4.35
3382 7380 1.303317 AACGGGGTGCAATCTGACC 60.303 57.895 0.00 0.00 0.00 4.02
3675 7681 6.692681 CCAATCAATGGTTGAACGATCAATAC 59.307 38.462 11.51 8.46 46.67 1.89
3714 7720 4.991884 TTCCACTGCTGAATGATGGAAACA 60.992 41.667 9.32 0.00 44.47 2.83
3747 7753 2.557555 ACTGATGGACTGATCCTGGA 57.442 50.000 0.00 0.00 46.43 3.86
3748 7754 2.396608 ACTGATGGACTGATCCTGGAG 58.603 52.381 1.52 0.00 46.43 3.86
4073 8081 2.275134 TTGACACCTGCACACATGAT 57.725 45.000 0.00 0.00 0.00 2.45
4083 8091 8.965819 ACACCTGCACACATGATATTAAAAATA 58.034 29.630 0.00 0.00 0.00 1.40
4316 8363 2.485814 GGAGAGTGACAAAGAACATGCC 59.514 50.000 0.00 0.00 0.00 4.40
4324 8377 1.466167 CAAAGAACATGCCGAGTCCAG 59.534 52.381 0.00 0.00 0.00 3.86
4496 8549 7.721399 AGTTCAGTTGTTCCTCTAATCACAAAT 59.279 33.333 0.00 0.00 31.10 2.32
4555 8609 2.550180 GACTTTCTGAACCTTCTGTGCC 59.450 50.000 0.00 0.00 0.00 5.01
4583 8637 8.709386 AGCTTTCTGTACTAATGACTAATGTG 57.291 34.615 0.00 0.00 0.00 3.21
4744 8798 3.432326 GGATACAGGGTTTCAGCTACAGG 60.432 52.174 0.00 0.00 0.00 4.00
4843 8897 1.069765 GGCGACGATGATGGTCCAT 59.930 57.895 3.26 3.26 0.00 3.41
4864 8918 4.935352 TGTTTTCAGGAAGTTCAATGGG 57.065 40.909 5.01 0.00 0.00 4.00
4998 9099 6.323203 TGTGTACCAGTAGAAGTAGTTGTC 57.677 41.667 0.00 0.00 0.00 3.18
5065 9194 5.047566 TGTGATTTCAGAACCAAGAGGAA 57.952 39.130 0.00 0.00 38.69 3.36
5257 9421 1.006832 ACTCGTGTGTTCTTGTGTGC 58.993 50.000 0.00 0.00 0.00 4.57
5274 9498 2.215196 GTGCGTGGGTTCTTTAAGTGA 58.785 47.619 0.00 0.00 0.00 3.41
5315 9540 9.491675 AAATTAATTGTTTGTTGCATGATCTGA 57.508 25.926 0.39 0.00 0.00 3.27
5320 9545 6.335471 TGTTTGTTGCATGATCTGATTCTT 57.665 33.333 0.00 0.00 0.00 2.52
5377 9603 6.127083 TGTTAGACCTGTGATGATATGAAGCA 60.127 38.462 0.00 0.00 0.00 3.91
5736 10231 8.920509 ATAACTTGTTTTGTTTGTGTTAGGAC 57.079 30.769 0.00 0.00 0.00 3.85
5738 10233 6.988522 ACTTGTTTTGTTTGTGTTAGGACTT 58.011 32.000 0.00 0.00 0.00 3.01
5739 10234 8.113173 ACTTGTTTTGTTTGTGTTAGGACTTA 57.887 30.769 0.00 0.00 0.00 2.24
5740 10235 8.241367 ACTTGTTTTGTTTGTGTTAGGACTTAG 58.759 33.333 0.00 0.00 0.00 2.18
5854 10982 5.717119 ATTATGCTTCCCCCTGGATATAC 57.283 43.478 0.00 0.00 41.40 1.47
5985 11113 2.429610 TCCCTAAGTAGATGTGCGTTCC 59.570 50.000 0.00 0.00 0.00 3.62
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 1.683943 CATATGGCCCACCTGTCAAG 58.316 55.000 0.00 0.00 36.63 3.02
5 6 1.227102 GCATATGGCCCACCTGTCA 59.773 57.895 0.00 0.00 36.63 3.58
6 7 1.893808 CGCATATGGCCCACCTGTC 60.894 63.158 0.00 0.00 40.31 3.51
7 8 2.192979 CGCATATGGCCCACCTGT 59.807 61.111 0.00 0.00 40.31 4.00
8 9 2.595463 CCGCATATGGCCCACCTG 60.595 66.667 0.00 0.00 40.31 4.00
9 10 3.889692 CCCGCATATGGCCCACCT 61.890 66.667 0.00 0.00 40.31 4.00
10 11 4.204028 ACCCGCATATGGCCCACC 62.204 66.667 0.00 0.00 40.31 4.61
27 28 2.846206 AGCAGGATTATGACAGGTTGGA 59.154 45.455 0.00 0.00 0.00 3.53
107 108 0.596082 AATCCCGGTTCAAAACTGCG 59.404 50.000 0.00 0.00 36.43 5.18
185 186 3.382048 ACCACTTTCCGACAGAACTAC 57.618 47.619 0.00 0.00 32.95 2.73
195 196 5.645497 AGTACTACTACTGTACCACTTTCCG 59.355 44.000 0.00 0.00 40.61 4.30
240 436 3.708563 CCACGGTTAGGCAATTATTGG 57.291 47.619 7.08 0.00 0.00 3.16
470 697 1.488393 AGAGCAAGCCAGGTCTAATCC 59.512 52.381 5.97 0.00 43.94 3.01
671 1412 8.099364 AGCCCAATAACATCATTTAACTATCG 57.901 34.615 0.00 0.00 0.00 2.92
784 2526 0.914644 ATGCAGGACAGTGCCATAGT 59.085 50.000 0.00 0.00 43.28 2.12
796 2549 2.028112 GTCAGTACCTTGTGATGCAGGA 60.028 50.000 0.00 0.00 0.00 3.86
797 2550 2.289631 TGTCAGTACCTTGTGATGCAGG 60.290 50.000 0.00 0.00 0.00 4.85
803 2556 7.450634 AGTTATAACTCTGTCAGTACCTTGTGA 59.549 37.037 12.50 0.00 32.86 3.58
810 2563 9.991388 CTGTAGAAGTTATAACTCTGTCAGTAC 57.009 37.037 18.28 11.57 38.57 2.73
821 2575 6.043411 CAGAGGGTGCTGTAGAAGTTATAAC 58.957 44.000 7.57 7.57 0.00 1.89
823 2577 4.649674 CCAGAGGGTGCTGTAGAAGTTATA 59.350 45.833 0.00 0.00 34.06 0.98
824 2578 3.452627 CCAGAGGGTGCTGTAGAAGTTAT 59.547 47.826 0.00 0.00 34.06 1.89
858 2645 3.265479 GCTATGCCAAGGAGATAAGGGAT 59.735 47.826 0.00 0.00 36.17 3.85
878 2668 3.429960 GGAATCGTACCCTACTTTTCGCT 60.430 47.826 0.00 0.00 0.00 4.93
985 2811 5.179452 ACTGCCATCACACCTTAAACTAT 57.821 39.130 0.00 0.00 0.00 2.12
991 2818 3.580895 TCTTGTACTGCCATCACACCTTA 59.419 43.478 0.00 0.00 0.00 2.69
1103 2971 2.359602 TGCAGAGAAGCAGGCAGC 60.360 61.111 0.00 0.00 40.11 5.25
1136 3012 1.734465 CAGAAGCCTCTTACCTTTGCG 59.266 52.381 0.00 0.00 0.00 4.85
1290 3173 1.227764 ATAGCTCCGCCAGTGCATG 60.228 57.895 0.00 0.00 37.44 4.06
1291 3174 1.227764 CATAGCTCCGCCAGTGCAT 60.228 57.895 0.00 0.00 37.44 3.96
1292 3175 2.187685 CATAGCTCCGCCAGTGCA 59.812 61.111 0.00 0.00 37.44 4.57
1293 3176 2.176273 CACATAGCTCCGCCAGTGC 61.176 63.158 0.00 0.00 35.13 4.40
1294 3177 2.176273 GCACATAGCTCCGCCAGTG 61.176 63.158 0.00 0.00 41.15 3.66
1295 3178 1.976132 ATGCACATAGCTCCGCCAGT 61.976 55.000 0.00 0.00 45.94 4.00
1296 3179 1.226686 GATGCACATAGCTCCGCCAG 61.227 60.000 0.00 0.00 45.94 4.85
1297 3180 1.227645 GATGCACATAGCTCCGCCA 60.228 57.895 0.00 0.00 45.94 5.69
1298 3181 1.963338 GGATGCACATAGCTCCGCC 60.963 63.158 0.00 0.00 45.94 6.13
1299 3182 1.963338 GGGATGCACATAGCTCCGC 60.963 63.158 0.00 0.00 45.94 5.54
1300 3183 0.602106 CAGGGATGCACATAGCTCCG 60.602 60.000 0.00 0.00 45.94 4.63
1301 3184 0.888285 GCAGGGATGCACATAGCTCC 60.888 60.000 0.00 0.00 45.94 4.70
1302 3185 0.179037 TGCAGGGATGCACATAGCTC 60.179 55.000 0.00 0.00 45.94 4.09
1303 3186 0.179026 CTGCAGGGATGCACATAGCT 60.179 55.000 5.57 0.00 45.94 3.32
1304 3187 1.170919 CCTGCAGGGATGCACATAGC 61.171 60.000 26.14 0.00 40.23 2.97
1305 3188 0.182061 ACCTGCAGGGATGCACATAG 59.818 55.000 35.42 7.17 40.23 2.23
1306 3189 0.107066 CACCTGCAGGGATGCACATA 60.107 55.000 35.42 0.00 40.23 2.29
1307 3190 1.379443 CACCTGCAGGGATGCACAT 60.379 57.895 35.42 10.21 40.23 3.21
1308 3191 2.034532 CACCTGCAGGGATGCACA 59.965 61.111 35.42 0.00 40.23 4.57
1309 3192 3.446570 GCACCTGCAGGGATGCAC 61.447 66.667 32.64 15.68 40.23 4.57
1310 3193 4.746309 GGCACCTGCAGGGATGCA 62.746 66.667 35.83 2.57 44.36 3.96
1311 3194 4.746309 TGGCACCTGCAGGGATGC 62.746 66.667 35.42 32.87 44.36 3.91
1312 3195 2.125326 CATGGCACCTGCAGGGATG 61.125 63.158 35.42 25.83 44.36 3.51
1313 3196 2.277737 CATGGCACCTGCAGGGAT 59.722 61.111 35.42 18.58 44.36 3.85
1314 3197 4.051167 CCATGGCACCTGCAGGGA 62.051 66.667 35.42 17.13 44.36 4.20
1323 3206 4.380945 TTGGGAGGGCCATGGCAC 62.381 66.667 36.56 34.72 46.56 5.01
1324 3207 4.380945 GTTGGGAGGGCCATGGCA 62.381 66.667 36.56 13.87 44.11 4.92
1326 3209 2.934838 AAGGTTGGGAGGGCCATGG 61.935 63.158 7.63 7.63 35.15 3.66
1327 3210 1.683365 CAAGGTTGGGAGGGCCATG 60.683 63.158 6.18 0.00 35.15 3.66
1328 3211 2.772924 CAAGGTTGGGAGGGCCAT 59.227 61.111 6.18 0.00 35.15 4.40
1329 3212 3.589542 CCAAGGTTGGGAGGGCCA 61.590 66.667 6.18 0.00 44.70 5.36
1338 3221 5.841810 TCTTCACTAAATTTGCCAAGGTTG 58.158 37.500 0.00 0.00 0.00 3.77
1339 3222 6.478512 TTCTTCACTAAATTTGCCAAGGTT 57.521 33.333 0.00 0.00 0.00 3.50
1340 3223 6.478512 TTTCTTCACTAAATTTGCCAAGGT 57.521 33.333 0.00 0.00 0.00 3.50
1341 3224 7.967890 AATTTCTTCACTAAATTTGCCAAGG 57.032 32.000 0.00 0.00 33.78 3.61
1394 3277 9.915629 GAGAAAAGACAGTAGAAAACATCTCTA 57.084 33.333 0.00 0.00 39.71 2.43
1395 3278 8.646900 AGAGAAAAGACAGTAGAAAACATCTCT 58.353 33.333 0.00 0.00 39.71 3.10
1396 3279 8.825667 AGAGAAAAGACAGTAGAAAACATCTC 57.174 34.615 0.00 0.00 39.71 2.75
1397 3280 9.620259 AAAGAGAAAAGACAGTAGAAAACATCT 57.380 29.630 0.00 0.00 42.48 2.90
1398 3281 9.657121 CAAAGAGAAAAGACAGTAGAAAACATC 57.343 33.333 0.00 0.00 0.00 3.06
1399 3282 8.624776 CCAAAGAGAAAAGACAGTAGAAAACAT 58.375 33.333 0.00 0.00 0.00 2.71
1400 3283 7.415206 GCCAAAGAGAAAAGACAGTAGAAAACA 60.415 37.037 0.00 0.00 0.00 2.83
1401 3284 6.913132 GCCAAAGAGAAAAGACAGTAGAAAAC 59.087 38.462 0.00 0.00 0.00 2.43
1402 3285 6.039382 GGCCAAAGAGAAAAGACAGTAGAAAA 59.961 38.462 0.00 0.00 0.00 2.29
1403 3286 5.531287 GGCCAAAGAGAAAAGACAGTAGAAA 59.469 40.000 0.00 0.00 0.00 2.52
1404 3287 5.063880 GGCCAAAGAGAAAAGACAGTAGAA 58.936 41.667 0.00 0.00 0.00 2.10
1405 3288 4.505039 GGGCCAAAGAGAAAAGACAGTAGA 60.505 45.833 4.39 0.00 0.00 2.59
1406 3289 3.753797 GGGCCAAAGAGAAAAGACAGTAG 59.246 47.826 4.39 0.00 0.00 2.57
1407 3290 3.497942 GGGGCCAAAGAGAAAAGACAGTA 60.498 47.826 4.39 0.00 0.00 2.74
1408 3291 2.587522 GGGCCAAAGAGAAAAGACAGT 58.412 47.619 4.39 0.00 0.00 3.55
1409 3292 1.889170 GGGGCCAAAGAGAAAAGACAG 59.111 52.381 4.39 0.00 0.00 3.51
1410 3293 1.480498 GGGGGCCAAAGAGAAAAGACA 60.480 52.381 4.39 0.00 0.00 3.41
1411 3294 1.257743 GGGGGCCAAAGAGAAAAGAC 58.742 55.000 4.39 0.00 0.00 3.01
1412 3295 3.765968 GGGGGCCAAAGAGAAAAGA 57.234 52.632 4.39 0.00 0.00 2.52
1428 3311 1.002857 AAGACCAGGAAGATTGGGGG 58.997 55.000 0.00 0.00 40.11 5.40
1429 3312 1.957113 GCAAGACCAGGAAGATTGGGG 60.957 57.143 0.00 0.00 40.11 4.96
1430 3313 1.005215 AGCAAGACCAGGAAGATTGGG 59.995 52.381 0.00 0.00 40.11 4.12
1431 3314 2.363683 GAGCAAGACCAGGAAGATTGG 58.636 52.381 0.00 0.00 41.60 3.16
1432 3315 2.363683 GGAGCAAGACCAGGAAGATTG 58.636 52.381 0.00 0.00 0.00 2.67
1433 3316 1.065854 CGGAGCAAGACCAGGAAGATT 60.066 52.381 0.00 0.00 0.00 2.40
1434 3317 0.539051 CGGAGCAAGACCAGGAAGAT 59.461 55.000 0.00 0.00 0.00 2.40
1435 3318 1.975327 CGGAGCAAGACCAGGAAGA 59.025 57.895 0.00 0.00 0.00 2.87
1436 3319 4.606071 CGGAGCAAGACCAGGAAG 57.394 61.111 0.00 0.00 0.00 3.46
1449 3332 1.019673 CTTCACATGGATTGGCGGAG 58.980 55.000 0.00 0.00 0.00 4.63
1450 3333 0.327924 ACTTCACATGGATTGGCGGA 59.672 50.000 0.00 0.00 0.00 5.54
1451 3334 1.135315 CAACTTCACATGGATTGGCGG 60.135 52.381 0.00 0.00 0.00 6.13
1452 3335 1.135315 CCAACTTCACATGGATTGGCG 60.135 52.381 0.00 0.00 39.12 5.69
1453 3336 2.170166 TCCAACTTCACATGGATTGGC 58.830 47.619 0.00 0.00 40.74 4.52
1454 3337 3.573538 TGTTCCAACTTCACATGGATTGG 59.426 43.478 0.00 3.68 44.83 3.16
1455 3338 4.520111 TCTGTTCCAACTTCACATGGATTG 59.480 41.667 0.00 0.00 44.83 2.67
1456 3339 4.520492 GTCTGTTCCAACTTCACATGGATT 59.480 41.667 0.00 0.00 44.83 3.01
1509 3395 2.419324 CAGAGCAAAAGAGCAGCCTAAG 59.581 50.000 0.00 0.00 36.85 2.18
1552 3497 3.251972 GCAAAGAAGCAGTCTATATGCCC 59.748 47.826 9.66 0.00 44.97 5.36
1571 3516 6.832520 TTCAAGAAGCCAATACTTATGCAA 57.167 33.333 0.00 0.00 0.00 4.08
1592 3537 2.625314 ACCTTTGCCAAGAAGCTCTTTC 59.375 45.455 0.00 0.00 33.78 2.62
2188 4728 2.504996 CTGAAGGAGAGAAAGGGCATCT 59.495 50.000 0.00 0.00 0.00 2.90
2296 4838 7.070447 AGCTTGATAACTTCAGAGATATGACCA 59.930 37.037 0.00 0.00 35.27 4.02
2422 4964 1.015109 GGAAGTAGCCCGCTTTTAGC 58.985 55.000 0.00 0.00 38.02 3.09
2459 5001 7.060383 TCAGAACTTTGAAGTGAGAATCTCT 57.940 36.000 11.92 0.00 41.35 3.10
2461 5003 9.956640 AATATCAGAACTTTGAAGTGAGAATCT 57.043 29.630 0.00 0.00 39.66 2.40
2546 5088 6.048509 TGTTGCTTTCTTTTTCTTGGGAATC 58.951 36.000 0.00 0.00 0.00 2.52
2549 5091 4.466015 ACTGTTGCTTTCTTTTTCTTGGGA 59.534 37.500 0.00 0.00 0.00 4.37
2665 5261 5.646360 TCTTACCATTTCTTGACGGAAATCC 59.354 40.000 0.00 0.00 42.02 3.01
2770 6599 1.677576 TGCTCTGCAGGAACAAACAAG 59.322 47.619 15.13 1.06 33.32 3.16
2924 6757 4.463539 AGTTGATAATCACTGGCAAATGCA 59.536 37.500 7.80 0.00 44.36 3.96
3042 6875 3.256631 GGAGCATGGTTCAAGACAATGTT 59.743 43.478 0.00 0.00 41.10 2.71
3081 6914 4.813750 ATGACCGATCATGAGATATGCA 57.186 40.909 0.09 0.00 44.26 3.96
3176 7009 0.112606 TCGGTGAAGGAGAGTCCACT 59.887 55.000 0.00 0.00 39.61 4.00
3233 7066 9.688091 TCAATTAGCAATTACAGGTAACCAATA 57.312 29.630 0.00 0.00 32.49 1.90
3282 7280 0.753262 AGACGTGACACCTTCTGCTT 59.247 50.000 0.00 0.00 0.00 3.91
3298 7296 3.685139 TTCATGGTGACTTCTGGAGAC 57.315 47.619 0.00 0.00 0.00 3.36
3382 7380 0.873054 CTTCTGCCTTCTGTGCTGTG 59.127 55.000 0.00 0.00 0.00 3.66
3631 7637 9.559732 TTGATTGGAATGTCTATCGTGATAAAT 57.440 29.630 0.00 0.00 0.00 1.40
3633 7639 8.992073 CATTGATTGGAATGTCTATCGTGATAA 58.008 33.333 0.00 0.00 0.00 1.75
3670 7676 6.710295 TGGAATGGAATAGTTCGATGGTATTG 59.290 38.462 0.00 0.00 0.00 1.90
3675 7681 4.512944 CAGTGGAATGGAATAGTTCGATGG 59.487 45.833 0.00 0.00 0.00 3.51
3707 7713 6.601613 TCAGTAAGAAAAAGCTTCTGTTTCCA 59.398 34.615 15.32 4.84 38.17 3.53
3714 7720 6.429385 CAGTCCATCAGTAAGAAAAAGCTTCT 59.571 38.462 0.00 0.00 0.00 2.85
3716 7722 6.299141 TCAGTCCATCAGTAAGAAAAAGCTT 58.701 36.000 0.00 0.00 0.00 3.74
3719 7725 7.313951 GGATCAGTCCATCAGTAAGAAAAAG 57.686 40.000 0.00 0.00 44.42 2.27
3747 7753 4.161189 ACAGACGAATGAATCATCAGGACT 59.839 41.667 0.00 0.00 39.39 3.85
3748 7754 4.437239 ACAGACGAATGAATCATCAGGAC 58.563 43.478 0.00 0.00 39.39 3.85
3820 7827 3.144657 TGGCAGAGTGTGATGAATTGT 57.855 42.857 0.00 0.00 0.00 2.71
4212 8255 6.381420 TCTTTCCCTGTAAAAACACAAATGGA 59.619 34.615 0.00 0.00 0.00 3.41
4316 8363 3.794717 TGAGTAGTAGTAGCTGGACTCG 58.205 50.000 0.00 0.00 36.86 4.18
4324 8377 5.123805 GGCATACCTTGAGTAGTAGTAGC 57.876 47.826 0.00 0.00 33.42 3.58
4496 8549 5.825593 AATGAACTGTCTAGGTCTTCCAA 57.174 39.130 0.00 0.00 41.40 3.53
4547 8600 2.378038 ACAGAAAGCTTTGGCACAGAA 58.622 42.857 18.30 0.00 42.39 3.02
4555 8609 9.979270 CATTAGTCATTAGTACAGAAAGCTTTG 57.021 33.333 18.30 6.50 0.00 2.77
4583 8637 5.105554 AGGTCTGCATATATAGTACAGCAGC 60.106 44.000 13.11 9.46 46.55 5.25
4744 8798 2.104963 AGAGACAAACTTGGTCCAGGAC 59.895 50.000 11.70 11.70 35.89 3.85
4843 8897 4.541705 TCCCATTGAACTTCCTGAAAACA 58.458 39.130 0.00 0.00 0.00 2.83
4864 8918 2.262423 AGTCCAGCAGAACAAACCTC 57.738 50.000 0.00 0.00 0.00 3.85
5065 9194 3.873910 ACGGCTACAAGCACTGAAATAT 58.126 40.909 0.78 0.00 44.75 1.28
5209 9373 6.424683 AGTTAAAACTTTTCGTCACCGATTC 58.575 36.000 0.00 0.00 38.41 2.52
5257 9421 4.032900 CGATCATCACTTAAAGAACCCACG 59.967 45.833 0.00 0.00 0.00 4.94
5274 9498 9.838339 AACAATTAATTTCTCCTAGTCGATCAT 57.162 29.630 0.00 0.00 0.00 2.45
5315 9540 0.244721 GCCAAAGAAGCCGCAAGAAT 59.755 50.000 0.00 0.00 43.02 2.40
5320 9545 1.391157 AAACAGCCAAAGAAGCCGCA 61.391 50.000 0.00 0.00 0.00 5.69
5377 9603 6.314400 GCCATTGATGAATTTTGCAACTACAT 59.686 34.615 0.00 2.94 0.00 2.29
5591 9954 8.303876 GGACACCACAAGAACAACAATAATAAT 58.696 33.333 0.00 0.00 0.00 1.28
5611 9974 2.602257 TCATCGTCATCATGGACACC 57.398 50.000 0.00 0.00 37.66 4.16
5658 10021 0.661552 TATTCGGCGAGTCGAGAAGG 59.338 55.000 18.61 0.00 40.42 3.46
5736 10231 5.888161 AGTTTCTTATGCATTGGGTCCTAAG 59.112 40.000 3.54 0.00 0.00 2.18
5738 10233 5.450818 AGTTTCTTATGCATTGGGTCCTA 57.549 39.130 3.54 0.00 0.00 2.94
5739 10234 4.322057 AGTTTCTTATGCATTGGGTCCT 57.678 40.909 3.54 0.00 0.00 3.85
5740 10235 5.437060 TCTAGTTTCTTATGCATTGGGTCC 58.563 41.667 3.54 0.00 0.00 4.46
5854 10982 6.161855 TGTAACTAGCCTGATTCTGTATGG 57.838 41.667 0.00 0.00 0.00 2.74
5985 11113 1.605710 CTCACTGCTTCCCTGTTTGTG 59.394 52.381 0.00 0.00 0.00 3.33


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.