Multiple sequence alignment - TraesCS5D01G077800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G077800 chr5D 100.000 3954 0 0 1 3954 77585334 77589287 0.000000e+00 7302.0
1 TraesCS5D01G077800 chr5D 93.504 585 37 1 3371 3954 254020702 254021286 0.000000e+00 869.0
2 TraesCS5D01G077800 chr5D 82.303 356 50 7 1614 1960 76204420 76204069 2.990000e-76 296.0
3 TraesCS5D01G077800 chr5D 76.786 224 52 0 2646 2869 76203390 76203167 4.150000e-25 126.0
4 TraesCS5D01G077800 chr5D 87.000 100 10 1 1176 1272 75277381 75277282 4.180000e-20 110.0
5 TraesCS5D01G077800 chr5D 88.060 67 6 2 2803 2869 76203113 76203049 1.180000e-10 78.7
6 TraesCS5D01G077800 chr5B 88.724 2625 202 56 763 3368 87239015 87241564 0.000000e+00 3121.0
7 TraesCS5D01G077800 chr5B 77.273 440 54 29 1 435 87236853 87237251 2.390000e-52 217.0
8 TraesCS5D01G077800 chr5B 83.444 151 16 5 1131 1272 83617101 83616951 8.920000e-27 132.0
9 TraesCS5D01G077800 chr5B 83.673 147 15 8 1134 1271 83620971 83620825 3.210000e-26 130.0
10 TraesCS5D01G077800 chr5A 88.232 1725 147 23 1474 3187 74486819 74488498 0.000000e+00 2010.0
11 TraesCS5D01G077800 chr5A 88.636 396 28 10 1051 1444 74486438 74486818 2.150000e-127 466.0
12 TraesCS5D01G077800 chr5A 78.360 439 45 21 1 435 74485644 74486036 5.110000e-59 239.0
13 TraesCS5D01G077800 chr5A 83.221 149 16 5 1133 1272 70463233 70463085 1.150000e-25 128.0
14 TraesCS5D01G077800 chr5A 84.746 118 15 2 1158 1272 70459352 70459235 8.980000e-22 115.0
15 TraesCS5D01G077800 chr5A 90.909 55 2 3 3318 3370 74488791 74488844 1.970000e-08 71.3
16 TraesCS5D01G077800 chr7B 94.237 590 30 3 3366 3954 158378266 158377680 0.000000e+00 898.0
17 TraesCS5D01G077800 chr7B 93.390 590 38 1 3366 3954 463418331 463418920 0.000000e+00 872.0
18 TraesCS5D01G077800 chr4D 94.511 583 31 1 3373 3954 468259939 468259357 0.000000e+00 898.0
19 TraesCS5D01G077800 chr1B 94.188 585 32 2 3371 3954 646488820 646489403 0.000000e+00 891.0
20 TraesCS5D01G077800 chr2A 93.888 589 34 2 3367 3954 768629737 768630324 0.000000e+00 887.0
21 TraesCS5D01G077800 chr4B 93.559 590 37 1 3366 3954 86130371 86129782 0.000000e+00 878.0
22 TraesCS5D01G077800 chr1A 93.846 585 32 3 3368 3951 30331332 30331913 0.000000e+00 878.0
23 TraesCS5D01G077800 chr6B 93.220 590 38 1 3367 3954 292768224 292767635 0.000000e+00 867.0
24 TraesCS5D01G077800 chr6B 94.017 351 19 2 1608 1957 181105095 181104746 7.520000e-147 531.0
25 TraesCS5D01G077800 chr6B 89.750 400 35 3 2626 3022 181103929 181103533 1.270000e-139 507.0
26 TraesCS5D01G077800 chr6B 86.093 453 49 12 2162 2605 181104532 181104085 3.580000e-130 475.0
27 TraesCS5D01G077800 chr6B 86.473 207 17 7 2018 2221 181104736 181104538 2.390000e-52 217.0
28 TraesCS5D01G077800 chr4A 85.762 597 65 14 2018 2605 665446451 665445866 7.260000e-172 614.0
29 TraesCS5D01G077800 chr4A 89.526 401 34 4 2626 3022 665445710 665445314 5.900000e-138 501.0
30 TraesCS5D01G077800 chr4A 92.558 215 14 2 1608 1821 665446853 665446640 1.380000e-79 307.0
31 TraesCS5D01G077800 chr4A 95.580 181 8 0 1777 1957 665446641 665446461 1.390000e-74 291.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G077800 chr5D 77585334 77589287 3953 False 7302.000 7302 100.00000 1 3954 1 chr5D.!!$F1 3953
1 TraesCS5D01G077800 chr5D 254020702 254021286 584 False 869.000 869 93.50400 3371 3954 1 chr5D.!!$F2 583
2 TraesCS5D01G077800 chr5B 87236853 87241564 4711 False 1669.000 3121 82.99850 1 3368 2 chr5B.!!$F1 3367
3 TraesCS5D01G077800 chr5A 74485644 74488844 3200 False 696.575 2010 86.53425 1 3370 4 chr5A.!!$F1 3369
4 TraesCS5D01G077800 chr7B 158377680 158378266 586 True 898.000 898 94.23700 3366 3954 1 chr7B.!!$R1 588
5 TraesCS5D01G077800 chr7B 463418331 463418920 589 False 872.000 872 93.39000 3366 3954 1 chr7B.!!$F1 588
6 TraesCS5D01G077800 chr4D 468259357 468259939 582 True 898.000 898 94.51100 3373 3954 1 chr4D.!!$R1 581
7 TraesCS5D01G077800 chr1B 646488820 646489403 583 False 891.000 891 94.18800 3371 3954 1 chr1B.!!$F1 583
8 TraesCS5D01G077800 chr2A 768629737 768630324 587 False 887.000 887 93.88800 3367 3954 1 chr2A.!!$F1 587
9 TraesCS5D01G077800 chr4B 86129782 86130371 589 True 878.000 878 93.55900 3366 3954 1 chr4B.!!$R1 588
10 TraesCS5D01G077800 chr1A 30331332 30331913 581 False 878.000 878 93.84600 3368 3951 1 chr1A.!!$F1 583
11 TraesCS5D01G077800 chr6B 292767635 292768224 589 True 867.000 867 93.22000 3367 3954 1 chr6B.!!$R1 587
12 TraesCS5D01G077800 chr6B 181103533 181105095 1562 True 432.500 531 89.08325 1608 3022 4 chr6B.!!$R2 1414
13 TraesCS5D01G077800 chr4A 665445314 665446853 1539 True 428.250 614 90.85650 1608 3022 4 chr4A.!!$R1 1414

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
839 2479 0.035343 GACCCCACCTTTCAGTAGGC 60.035 60.0 0.00 0.00 38.99 3.93 F
1022 2686 0.172803 CATGAAGAGCAAGGCAAGCC 59.827 55.0 2.02 2.02 0.00 4.35 F
1670 3349 0.392729 AGCAGCTTCATCAGGCAGAC 60.393 55.0 0.00 0.00 0.00 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2265 4073 0.102300 CCTGTCACAGTGTGTCACGA 59.898 55.0 22.29 0.0 39.64 4.35 R
2932 4886 0.036306 AGTCCACTAAGGCAAACCGG 59.964 55.0 0.00 0.0 42.76 5.28 R
3443 5405 0.179043 TGGGTGTGTGCGTGTGTTAT 60.179 50.0 0.00 0.0 0.00 1.89 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
78 79 4.590850 ACTGTTGATTTGCTCCCTTTTC 57.409 40.909 0.00 0.00 0.00 2.29
84 86 1.331214 TTTGCTCCCTTTTCTGCCTG 58.669 50.000 0.00 0.00 0.00 4.85
96 98 3.708563 TTCTGCCTGTGCTTTTGTAAC 57.291 42.857 0.00 0.00 38.71 2.50
112 114 7.308770 GCTTTTGTAACCGGGAAGTTTAGTATT 60.309 37.037 6.32 0.00 0.00 1.89
121 124 5.568023 CGGGAAGTTTAGTATTGTCAGTGGA 60.568 44.000 0.00 0.00 0.00 4.02
141 144 5.861787 GTGGATTTTGTGTTAGAATTTCCCG 59.138 40.000 0.00 0.00 0.00 5.14
142 145 5.770663 TGGATTTTGTGTTAGAATTTCCCGA 59.229 36.000 0.00 0.00 0.00 5.14
143 146 6.435904 TGGATTTTGTGTTAGAATTTCCCGAT 59.564 34.615 0.00 0.00 0.00 4.18
144 147 6.751888 GGATTTTGTGTTAGAATTTCCCGATG 59.248 38.462 0.00 0.00 0.00 3.84
145 148 6.885952 TTTTGTGTTAGAATTTCCCGATGA 57.114 33.333 0.00 0.00 0.00 2.92
146 149 7.461182 TTTTGTGTTAGAATTTCCCGATGAT 57.539 32.000 0.00 0.00 0.00 2.45
147 150 6.677781 TTGTGTTAGAATTTCCCGATGATC 57.322 37.500 0.00 0.00 0.00 2.92
148 151 5.739959 TGTGTTAGAATTTCCCGATGATCA 58.260 37.500 0.00 0.00 0.00 2.92
149 152 6.176896 TGTGTTAGAATTTCCCGATGATCAA 58.823 36.000 0.00 0.00 0.00 2.57
150 153 6.828273 TGTGTTAGAATTTCCCGATGATCAAT 59.172 34.615 0.00 0.00 0.00 2.57
151 154 7.134815 GTGTTAGAATTTCCCGATGATCAATG 58.865 38.462 0.00 0.00 0.00 2.82
152 155 6.828273 TGTTAGAATTTCCCGATGATCAATGT 59.172 34.615 0.00 0.00 0.00 2.71
153 156 7.012327 TGTTAGAATTTCCCGATGATCAATGTC 59.988 37.037 0.00 0.00 0.00 3.06
154 157 4.823989 AGAATTTCCCGATGATCAATGTCC 59.176 41.667 0.00 0.00 0.00 4.02
155 158 2.638480 TTCCCGATGATCAATGTCCC 57.362 50.000 0.00 0.00 0.00 4.46
156 159 1.806496 TCCCGATGATCAATGTCCCT 58.194 50.000 0.00 0.00 0.00 4.20
157 160 1.417517 TCCCGATGATCAATGTCCCTG 59.582 52.381 0.00 0.00 0.00 4.45
180 183 4.753233 CTGACTCATCCGACAAAATCTCT 58.247 43.478 0.00 0.00 0.00 3.10
184 187 5.738909 ACTCATCCGACAAAATCTCTGAAT 58.261 37.500 0.00 0.00 0.00 2.57
185 188 5.583854 ACTCATCCGACAAAATCTCTGAATG 59.416 40.000 0.00 0.00 0.00 2.67
186 189 5.491070 TCATCCGACAAAATCTCTGAATGT 58.509 37.500 0.00 0.00 0.00 2.71
187 190 5.352293 TCATCCGACAAAATCTCTGAATGTG 59.648 40.000 0.00 0.00 0.00 3.21
188 191 3.436704 TCCGACAAAATCTCTGAATGTGC 59.563 43.478 0.00 0.00 0.00 4.57
191 194 4.436584 CGACAAAATCTCTGAATGTGCCTC 60.437 45.833 0.00 0.00 0.00 4.70
192 195 4.660168 ACAAAATCTCTGAATGTGCCTCT 58.340 39.130 0.00 0.00 0.00 3.69
193 196 4.458295 ACAAAATCTCTGAATGTGCCTCTG 59.542 41.667 0.00 0.00 0.00 3.35
194 197 3.996921 AATCTCTGAATGTGCCTCTGT 57.003 42.857 0.00 0.00 0.00 3.41
196 199 5.426689 AATCTCTGAATGTGCCTCTGTTA 57.573 39.130 0.00 0.00 0.00 2.41
197 200 4.193826 TCTCTGAATGTGCCTCTGTTAC 57.806 45.455 0.00 0.00 0.00 2.50
204 207 6.058833 TGAATGTGCCTCTGTTACAAACTAA 58.941 36.000 0.00 0.00 0.00 2.24
212 215 8.377034 TGCCTCTGTTACAAACTAAATTACCTA 58.623 33.333 0.00 0.00 0.00 3.08
265 268 9.672673 AGTTTGTGTTATAGAATTATGAGCACT 57.327 29.630 0.00 0.00 0.00 4.40
268 271 8.662781 TGTGTTATAGAATTATGAGCACTTCC 57.337 34.615 0.00 0.00 0.00 3.46
270 273 9.982651 GTGTTATAGAATTATGAGCACTTCCTA 57.017 33.333 0.00 0.00 0.00 2.94
317 320 9.712305 ATTAAGATACTTCAGATATTCGTTGGG 57.288 33.333 0.00 0.00 0.00 4.12
321 324 3.118371 ACTTCAGATATTCGTTGGGGGAC 60.118 47.826 0.00 0.00 0.00 4.46
329 332 1.420430 TCGTTGGGGGACATATCCTC 58.580 55.000 0.00 0.00 46.20 3.71
339 342 5.324409 GGGGACATATCCTCATAAAATGCA 58.676 41.667 0.00 0.00 46.19 3.96
344 347 8.362639 GGACATATCCTCATAAAATGCACAAAT 58.637 33.333 0.00 0.00 42.45 2.32
348 353 9.976511 ATATCCTCATAAAATGCACAAATTCTG 57.023 29.630 0.00 0.00 0.00 3.02
358 369 2.932187 GCACAAATTCTGGCAATCCCAC 60.932 50.000 0.00 0.00 39.18 4.61
364 375 1.462616 TCTGGCAATCCCACGAAATG 58.537 50.000 0.00 0.00 39.18 2.32
365 376 1.176527 CTGGCAATCCCACGAAATGT 58.823 50.000 0.00 0.00 39.18 2.71
373 384 5.163703 GCAATCCCACGAAATGTATGTGTAA 60.164 40.000 0.00 0.00 31.75 2.41
379 390 8.024285 TCCCACGAAATGTATGTGTAAAAATTC 58.976 33.333 0.00 0.00 31.75 2.17
410 422 8.551205 AGTTATGTATTGTTCTACATTCATGCG 58.449 33.333 2.40 0.00 41.42 4.73
413 425 7.371126 TGTATTGTTCTACATTCATGCGAAA 57.629 32.000 0.00 0.00 34.01 3.46
414 426 7.811653 TGTATTGTTCTACATTCATGCGAAAA 58.188 30.769 0.00 0.00 34.01 2.29
417 429 8.761575 ATTGTTCTACATTCATGCGAAAATTT 57.238 26.923 0.00 0.00 34.01 1.82
419 431 9.684448 TTGTTCTACATTCATGCGAAAATTTAA 57.316 25.926 0.00 0.00 34.01 1.52
422 434 9.906660 TTCTACATTCATGCGAAAATTTAACTT 57.093 25.926 0.00 0.00 34.01 2.66
426 438 9.906660 ACATTCATGCGAAAATTTAACTTAAGA 57.093 25.926 10.09 0.00 34.01 2.10
433 445 9.959749 TGCGAAAATTTAACTTAAGATTGAAGT 57.040 25.926 10.09 0.16 38.81 3.01
444 456 8.653036 ACTTAAGATTGAAGTACTCTACCAGT 57.347 34.615 10.09 0.00 35.36 4.00
445 457 8.524487 ACTTAAGATTGAAGTACTCTACCAGTG 58.476 37.037 10.09 0.00 35.36 3.66
446 458 8.645814 TTAAGATTGAAGTACTCTACCAGTGA 57.354 34.615 0.00 0.00 36.43 3.41
447 459 6.767524 AGATTGAAGTACTCTACCAGTGAG 57.232 41.667 0.00 0.00 36.43 3.51
448 460 6.486056 AGATTGAAGTACTCTACCAGTGAGA 58.514 40.000 0.00 0.00 36.43 3.27
449 461 6.948886 AGATTGAAGTACTCTACCAGTGAGAA 59.051 38.462 0.00 0.00 36.43 2.87
450 462 6.971726 TTGAAGTACTCTACCAGTGAGAAA 57.028 37.500 0.00 0.00 36.43 2.52
451 463 6.576662 TGAAGTACTCTACCAGTGAGAAAG 57.423 41.667 0.00 0.00 36.43 2.62
452 464 6.304624 TGAAGTACTCTACCAGTGAGAAAGA 58.695 40.000 0.00 0.00 36.43 2.52
453 465 6.776116 TGAAGTACTCTACCAGTGAGAAAGAA 59.224 38.462 0.00 0.00 36.43 2.52
454 466 7.287005 TGAAGTACTCTACCAGTGAGAAAGAAA 59.713 37.037 0.00 0.00 36.43 2.52
455 467 7.598759 AGTACTCTACCAGTGAGAAAGAAAA 57.401 36.000 0.00 0.00 36.43 2.29
456 468 8.019656 AGTACTCTACCAGTGAGAAAGAAAAA 57.980 34.615 0.00 0.00 36.43 1.94
457 469 8.145122 AGTACTCTACCAGTGAGAAAGAAAAAG 58.855 37.037 0.00 0.00 36.43 2.27
458 470 7.125792 ACTCTACCAGTGAGAAAGAAAAAGA 57.874 36.000 0.00 0.00 32.26 2.52
459 471 6.987404 ACTCTACCAGTGAGAAAGAAAAAGAC 59.013 38.462 0.00 0.00 32.26 3.01
460 472 6.884832 TCTACCAGTGAGAAAGAAAAAGACA 58.115 36.000 0.00 0.00 0.00 3.41
461 473 6.986817 TCTACCAGTGAGAAAGAAAAAGACAG 59.013 38.462 0.00 0.00 0.00 3.51
462 474 5.501156 ACCAGTGAGAAAGAAAAAGACAGT 58.499 37.500 0.00 0.00 0.00 3.55
463 475 6.650120 ACCAGTGAGAAAGAAAAAGACAGTA 58.350 36.000 0.00 0.00 0.00 2.74
464 476 6.539103 ACCAGTGAGAAAGAAAAAGACAGTAC 59.461 38.462 0.00 0.00 0.00 2.73
465 477 6.763610 CCAGTGAGAAAGAAAAAGACAGTACT 59.236 38.462 0.00 0.00 0.00 2.73
466 478 7.254590 CCAGTGAGAAAGAAAAAGACAGTACTG 60.255 40.741 21.44 21.44 0.00 2.74
467 479 7.492669 CAGTGAGAAAGAAAAAGACAGTACTGA 59.507 37.037 29.30 0.00 33.15 3.41
468 480 7.492994 AGTGAGAAAGAAAAAGACAGTACTGAC 59.507 37.037 29.30 22.53 0.00 3.51
469 481 7.277981 GTGAGAAAGAAAAAGACAGTACTGACA 59.722 37.037 29.30 0.00 0.00 3.58
470 482 7.492669 TGAGAAAGAAAAAGACAGTACTGACAG 59.507 37.037 29.30 0.00 0.00 3.51
471 483 7.331791 AGAAAGAAAAAGACAGTACTGACAGT 58.668 34.615 29.30 13.68 0.00 3.55
472 484 8.475639 AGAAAGAAAAAGACAGTACTGACAGTA 58.524 33.333 29.30 11.37 0.00 2.74
482 494 4.727235 GTACTGACAGTACTTGGCAAAC 57.273 45.455 30.26 10.34 46.46 2.93
483 495 3.560636 ACTGACAGTACTTGGCAAACT 57.439 42.857 6.24 0.00 46.46 2.66
484 496 4.682778 ACTGACAGTACTTGGCAAACTA 57.317 40.909 6.24 0.00 46.46 2.24
485 497 5.228945 ACTGACAGTACTTGGCAAACTAT 57.771 39.130 6.24 0.00 46.46 2.12
486 498 5.621193 ACTGACAGTACTTGGCAAACTATT 58.379 37.500 6.24 0.00 46.46 1.73
487 499 5.701290 ACTGACAGTACTTGGCAAACTATTC 59.299 40.000 6.24 4.03 46.46 1.75
488 500 5.616270 TGACAGTACTTGGCAAACTATTCA 58.384 37.500 0.00 6.44 43.52 2.57
489 501 6.058833 TGACAGTACTTGGCAAACTATTCAA 58.941 36.000 0.00 0.00 43.52 2.69
490 502 6.714810 TGACAGTACTTGGCAAACTATTCAAT 59.285 34.615 0.00 0.00 43.52 2.57
491 503 7.230510 TGACAGTACTTGGCAAACTATTCAATT 59.769 33.333 0.00 0.00 43.52 2.32
492 504 7.951591 ACAGTACTTGGCAAACTATTCAATTT 58.048 30.769 0.00 0.00 0.00 1.82
493 505 8.082242 ACAGTACTTGGCAAACTATTCAATTTC 58.918 33.333 0.00 0.00 0.00 2.17
494 506 8.081633 CAGTACTTGGCAAACTATTCAATTTCA 58.918 33.333 0.00 0.00 0.00 2.69
495 507 8.082242 AGTACTTGGCAAACTATTCAATTTCAC 58.918 33.333 0.00 0.00 0.00 3.18
496 508 6.223120 ACTTGGCAAACTATTCAATTTCACC 58.777 36.000 0.00 0.00 0.00 4.02
497 509 5.798125 TGGCAAACTATTCAATTTCACCA 57.202 34.783 0.00 0.00 0.00 4.17
498 510 6.166984 TGGCAAACTATTCAATTTCACCAA 57.833 33.333 0.00 0.00 0.00 3.67
499 511 6.222389 TGGCAAACTATTCAATTTCACCAAG 58.778 36.000 0.00 0.00 0.00 3.61
500 512 5.120674 GGCAAACTATTCAATTTCACCAAGC 59.879 40.000 0.00 0.00 0.00 4.01
501 513 5.695816 GCAAACTATTCAATTTCACCAAGCA 59.304 36.000 0.00 0.00 0.00 3.91
502 514 6.369615 GCAAACTATTCAATTTCACCAAGCAT 59.630 34.615 0.00 0.00 0.00 3.79
503 515 7.095102 GCAAACTATTCAATTTCACCAAGCATT 60.095 33.333 0.00 0.00 0.00 3.56
519 531 6.232139 CAAGCATTGGTTCTTGGATTTTTC 57.768 37.500 0.00 0.00 43.94 2.29
520 532 5.549742 AGCATTGGTTCTTGGATTTTTCA 57.450 34.783 0.00 0.00 0.00 2.69
521 533 5.927819 AGCATTGGTTCTTGGATTTTTCAA 58.072 33.333 0.00 0.00 0.00 2.69
522 534 6.536447 AGCATTGGTTCTTGGATTTTTCAAT 58.464 32.000 0.00 0.00 0.00 2.57
523 535 6.652062 AGCATTGGTTCTTGGATTTTTCAATC 59.348 34.615 0.00 0.00 38.54 2.67
524 536 6.652062 GCATTGGTTCTTGGATTTTTCAATCT 59.348 34.615 0.00 0.00 39.17 2.40
525 537 7.173735 GCATTGGTTCTTGGATTTTTCAATCTT 59.826 33.333 0.00 0.00 39.17 2.40
526 538 8.715088 CATTGGTTCTTGGATTTTTCAATCTTC 58.285 33.333 0.00 0.00 39.17 2.87
527 539 6.758254 TGGTTCTTGGATTTTTCAATCTTCC 58.242 36.000 0.00 0.00 39.17 3.46
528 540 6.326064 TGGTTCTTGGATTTTTCAATCTTCCA 59.674 34.615 0.00 0.00 39.17 3.53
529 541 7.147585 TGGTTCTTGGATTTTTCAATCTTCCAA 60.148 33.333 2.99 2.99 42.58 3.53
530 542 7.879677 GGTTCTTGGATTTTTCAATCTTCCAAT 59.120 33.333 3.38 0.00 43.49 3.16
531 543 8.715088 GTTCTTGGATTTTTCAATCTTCCAATG 58.285 33.333 3.38 0.00 43.49 2.82
532 544 6.875195 TCTTGGATTTTTCAATCTTCCAATGC 59.125 34.615 3.38 0.00 43.49 3.56
533 545 5.490159 TGGATTTTTCAATCTTCCAATGCC 58.510 37.500 0.00 0.00 39.17 4.40
534 546 5.248934 TGGATTTTTCAATCTTCCAATGCCT 59.751 36.000 0.00 0.00 39.17 4.75
535 547 6.440010 TGGATTTTTCAATCTTCCAATGCCTA 59.560 34.615 0.00 0.00 39.17 3.93
536 548 7.126115 TGGATTTTTCAATCTTCCAATGCCTAT 59.874 33.333 0.00 0.00 39.17 2.57
537 549 7.440255 GGATTTTTCAATCTTCCAATGCCTATG 59.560 37.037 0.00 0.00 39.17 2.23
538 550 6.855763 TTTTCAATCTTCCAATGCCTATGT 57.144 33.333 0.00 0.00 0.00 2.29
539 551 6.855763 TTTCAATCTTCCAATGCCTATGTT 57.144 33.333 0.00 0.00 0.00 2.71
540 552 7.953005 TTTCAATCTTCCAATGCCTATGTTA 57.047 32.000 0.00 0.00 0.00 2.41
541 553 7.953005 TTCAATCTTCCAATGCCTATGTTAA 57.047 32.000 0.00 0.00 0.00 2.01
542 554 8.537728 TTCAATCTTCCAATGCCTATGTTAAT 57.462 30.769 0.00 0.00 0.00 1.40
543 555 9.639563 TTCAATCTTCCAATGCCTATGTTAATA 57.360 29.630 0.00 0.00 0.00 0.98
544 556 9.812347 TCAATCTTCCAATGCCTATGTTAATAT 57.188 29.630 0.00 0.00 0.00 1.28
545 557 9.850628 CAATCTTCCAATGCCTATGTTAATATG 57.149 33.333 0.00 0.00 0.00 1.78
546 558 9.592196 AATCTTCCAATGCCTATGTTAATATGT 57.408 29.630 0.00 0.00 0.00 2.29
547 559 8.995027 TCTTCCAATGCCTATGTTAATATGTT 57.005 30.769 0.00 0.00 0.00 2.71
548 560 9.420118 TCTTCCAATGCCTATGTTAATATGTTT 57.580 29.630 0.00 0.00 0.00 2.83
551 563 9.814899 TCCAATGCCTATGTTAATATGTTTTTG 57.185 29.630 0.00 0.00 0.00 2.44
552 564 9.598517 CCAATGCCTATGTTAATATGTTTTTGT 57.401 29.630 0.00 0.00 0.00 2.83
567 579 9.869757 ATATGTTTTTGTAAAACCTCTAATGCC 57.130 29.630 11.30 0.00 0.00 4.40
568 580 7.354751 TGTTTTTGTAAAACCTCTAATGCCT 57.645 32.000 11.30 0.00 0.00 4.75
569 581 8.466617 TGTTTTTGTAAAACCTCTAATGCCTA 57.533 30.769 11.30 0.00 0.00 3.93
570 582 9.084533 TGTTTTTGTAAAACCTCTAATGCCTAT 57.915 29.630 11.30 0.00 0.00 2.57
571 583 9.353999 GTTTTTGTAAAACCTCTAATGCCTATG 57.646 33.333 4.15 0.00 0.00 2.23
572 584 8.644374 TTTTGTAAAACCTCTAATGCCTATGT 57.356 30.769 0.00 0.00 0.00 2.29
573 585 9.742144 TTTTGTAAAACCTCTAATGCCTATGTA 57.258 29.630 0.00 0.00 0.00 2.29
574 586 8.726870 TTGTAAAACCTCTAATGCCTATGTAC 57.273 34.615 0.00 0.00 0.00 2.90
575 587 8.086143 TGTAAAACCTCTAATGCCTATGTACT 57.914 34.615 0.00 0.00 0.00 2.73
576 588 7.985184 TGTAAAACCTCTAATGCCTATGTACTG 59.015 37.037 0.00 0.00 0.00 2.74
577 589 6.561519 AAACCTCTAATGCCTATGTACTGT 57.438 37.500 0.00 0.00 0.00 3.55
578 590 7.670605 AAACCTCTAATGCCTATGTACTGTA 57.329 36.000 0.00 0.00 0.00 2.74
579 591 7.857404 AACCTCTAATGCCTATGTACTGTAT 57.143 36.000 0.00 0.00 0.00 2.29
580 592 7.233389 ACCTCTAATGCCTATGTACTGTATG 57.767 40.000 0.00 0.00 0.00 2.39
581 593 6.782988 ACCTCTAATGCCTATGTACTGTATGT 59.217 38.462 0.00 0.00 0.00 2.29
582 594 7.290248 ACCTCTAATGCCTATGTACTGTATGTT 59.710 37.037 0.00 0.00 0.00 2.71
583 595 8.803235 CCTCTAATGCCTATGTACTGTATGTTA 58.197 37.037 0.00 0.00 0.00 2.41
608 620 5.587388 AGTATTGTCAATGGATTTGCTGG 57.413 39.130 8.39 0.00 35.16 4.85
609 621 3.899052 ATTGTCAATGGATTTGCTGGG 57.101 42.857 0.00 0.00 35.16 4.45
610 622 2.307496 TGTCAATGGATTTGCTGGGT 57.693 45.000 0.00 0.00 35.16 4.51
611 623 2.170166 TGTCAATGGATTTGCTGGGTC 58.830 47.619 0.00 0.00 35.16 4.46
612 624 2.170166 GTCAATGGATTTGCTGGGTCA 58.830 47.619 0.00 0.00 35.16 4.02
613 625 2.094545 GTCAATGGATTTGCTGGGTCAC 60.095 50.000 0.00 0.00 35.16 3.67
614 626 2.173519 CAATGGATTTGCTGGGTCACT 58.826 47.619 0.00 0.00 0.00 3.41
615 627 2.564062 CAATGGATTTGCTGGGTCACTT 59.436 45.455 0.00 0.00 0.00 3.16
616 628 1.909700 TGGATTTGCTGGGTCACTTC 58.090 50.000 0.00 0.00 0.00 3.01
620 632 3.416156 GATTTGCTGGGTCACTTCTCTT 58.584 45.455 0.00 0.00 0.00 2.85
625 637 3.327757 TGCTGGGTCACTTCTCTTACAAT 59.672 43.478 0.00 0.00 0.00 2.71
629 641 5.063204 TGGGTCACTTCTCTTACAATTGTG 58.937 41.667 21.42 5.44 0.00 3.33
650 662 1.538687 GCTGCAACCAGGAGGCAATT 61.539 55.000 10.36 0.00 39.54 2.32
662 684 4.996122 CAGGAGGCAATTAGCTAAGATCAG 59.004 45.833 12.54 1.29 44.79 2.90
665 687 5.221621 GGAGGCAATTAGCTAAGATCAGAGT 60.222 44.000 12.54 0.00 44.79 3.24
668 690 5.465056 GGCAATTAGCTAAGATCAGAGTCAC 59.535 44.000 12.54 0.00 44.79 3.67
683 705 8.764524 ATCAGAGTCACTTTGATTACAGTTAC 57.235 34.615 4.97 0.00 32.50 2.50
686 708 8.704234 CAGAGTCACTTTGATTACAGTTACTTC 58.296 37.037 0.00 0.00 0.00 3.01
687 709 8.421784 AGAGTCACTTTGATTACAGTTACTTCA 58.578 33.333 0.00 0.00 0.00 3.02
693 715 9.507329 ACTTTGATTACAGTTACTTCATGACAT 57.493 29.630 0.00 0.00 0.00 3.06
721 743 8.862325 TTTATGGTACTTGAATGAATCACTGT 57.138 30.769 0.00 0.00 37.92 3.55
722 744 9.952030 TTTATGGTACTTGAATGAATCACTGTA 57.048 29.630 0.00 0.00 37.92 2.74
723 745 9.952030 TTATGGTACTTGAATGAATCACTGTAA 57.048 29.630 0.00 0.00 37.92 2.41
724 746 7.905604 TGGTACTTGAATGAATCACTGTAAG 57.094 36.000 0.00 0.00 37.92 2.34
725 747 6.878923 TGGTACTTGAATGAATCACTGTAAGG 59.121 38.462 0.00 0.00 37.92 2.69
726 748 7.103641 GGTACTTGAATGAATCACTGTAAGGA 58.896 38.462 0.00 0.00 37.92 3.36
727 749 7.606456 GGTACTTGAATGAATCACTGTAAGGAA 59.394 37.037 0.00 0.00 37.92 3.36
728 750 8.999431 GTACTTGAATGAATCACTGTAAGGAAA 58.001 33.333 0.00 0.00 37.92 3.13
729 751 8.641498 ACTTGAATGAATCACTGTAAGGAAAT 57.359 30.769 0.00 0.00 37.92 2.17
730 752 9.739276 ACTTGAATGAATCACTGTAAGGAAATA 57.261 29.630 0.00 0.00 37.92 1.40
752 774 1.413118 TTCTGAGCACTGTCCACTCA 58.587 50.000 5.04 5.04 38.09 3.41
758 780 3.060602 GAGCACTGTCCACTCAACTTAC 58.939 50.000 0.00 0.00 0.00 2.34
759 781 2.700897 AGCACTGTCCACTCAACTTACT 59.299 45.455 0.00 0.00 0.00 2.24
760 782 3.895656 AGCACTGTCCACTCAACTTACTA 59.104 43.478 0.00 0.00 0.00 1.82
761 783 4.021894 AGCACTGTCCACTCAACTTACTAG 60.022 45.833 0.00 0.00 0.00 2.57
766 2403 7.389884 CACTGTCCACTCAACTTACTAGTACTA 59.610 40.741 0.91 1.89 33.17 1.82
771 2408 7.175641 TCCACTCAACTTACTAGTACTACCAAC 59.824 40.741 0.91 0.00 33.17 3.77
774 2411 9.799106 ACTCAACTTACTAGTACTACCAACTTA 57.201 33.333 0.91 0.00 33.17 2.24
777 2414 9.018582 CAACTTACTAGTACTACCAACTTACCT 57.981 37.037 0.91 0.00 33.17 3.08
778 2415 8.800370 ACTTACTAGTACTACCAACTTACCTC 57.200 38.462 0.91 0.00 31.21 3.85
779 2416 8.610369 ACTTACTAGTACTACCAACTTACCTCT 58.390 37.037 0.91 0.00 31.21 3.69
786 2423 1.985895 ACCAACTTACCTCTCCCCAAG 59.014 52.381 0.00 0.00 0.00 3.61
787 2424 2.266279 CCAACTTACCTCTCCCCAAGA 58.734 52.381 0.00 0.00 0.00 3.02
788 2425 2.846827 CCAACTTACCTCTCCCCAAGAT 59.153 50.000 0.00 0.00 32.19 2.40
789 2426 3.370953 CCAACTTACCTCTCCCCAAGATG 60.371 52.174 0.00 0.00 32.19 2.90
790 2427 3.491766 ACTTACCTCTCCCCAAGATGA 57.508 47.619 0.00 0.00 32.19 2.92
793 2430 4.790790 ACTTACCTCTCCCCAAGATGAAAT 59.209 41.667 0.00 0.00 32.19 2.17
807 2447 8.034215 CCCAAGATGAAATTAAACATAGCACAA 58.966 33.333 0.00 0.00 0.00 3.33
815 2455 3.874392 AAACATAGCACAAATCTGCCC 57.126 42.857 0.00 0.00 37.96 5.36
821 2461 0.895100 GCACAAATCTGCCCTGGTGA 60.895 55.000 0.00 0.00 0.00 4.02
839 2479 0.035343 GACCCCACCTTTCAGTAGGC 60.035 60.000 0.00 0.00 38.99 3.93
852 2492 1.414181 CAGTAGGCGAGGTCCATGAAT 59.586 52.381 0.00 0.00 0.00 2.57
859 2499 1.541233 CGAGGTCCATGAATACCCAGC 60.541 57.143 0.00 0.00 36.34 4.85
867 2507 0.249120 TGAATACCCAGCGTCCACTG 59.751 55.000 0.00 0.00 37.42 3.66
874 2515 2.203640 AGCGTCCACTGGTCTCCA 60.204 61.111 0.00 0.00 0.00 3.86
889 2530 3.510360 GGTCTCCACTGAGCTGTAACTTA 59.490 47.826 0.00 0.00 38.58 2.24
925 2566 9.422681 TCTATTTAGGTATGCAGTTACTCTTCT 57.577 33.333 0.00 0.00 0.00 2.85
926 2567 9.685828 CTATTTAGGTATGCAGTTACTCTTCTC 57.314 37.037 0.00 0.00 0.00 2.87
927 2568 7.476540 TTTAGGTATGCAGTTACTCTTCTCA 57.523 36.000 0.00 0.00 0.00 3.27
928 2569 5.331876 AGGTATGCAGTTACTCTTCTCAC 57.668 43.478 0.00 0.00 0.00 3.51
929 2570 4.160626 AGGTATGCAGTTACTCTTCTCACC 59.839 45.833 0.00 0.00 0.00 4.02
930 2571 3.618690 ATGCAGTTACTCTTCTCACCC 57.381 47.619 0.00 0.00 0.00 4.61
931 2572 2.609747 TGCAGTTACTCTTCTCACCCT 58.390 47.619 0.00 0.00 0.00 4.34
932 2573 2.563179 TGCAGTTACTCTTCTCACCCTC 59.437 50.000 0.00 0.00 0.00 4.30
933 2574 2.563179 GCAGTTACTCTTCTCACCCTCA 59.437 50.000 0.00 0.00 0.00 3.86
934 2575 3.615351 GCAGTTACTCTTCTCACCCTCAC 60.615 52.174 0.00 0.00 0.00 3.51
935 2576 3.056465 CAGTTACTCTTCTCACCCTCACC 60.056 52.174 0.00 0.00 0.00 4.02
936 2577 2.897969 GTTACTCTTCTCACCCTCACCA 59.102 50.000 0.00 0.00 0.00 4.17
937 2578 2.103153 ACTCTTCTCACCCTCACCAA 57.897 50.000 0.00 0.00 0.00 3.67
938 2579 2.408565 ACTCTTCTCACCCTCACCAAA 58.591 47.619 0.00 0.00 0.00 3.28
939 2580 2.370189 ACTCTTCTCACCCTCACCAAAG 59.630 50.000 0.00 0.00 0.00 2.77
940 2581 2.634940 CTCTTCTCACCCTCACCAAAGA 59.365 50.000 0.00 0.00 0.00 2.52
941 2582 3.045634 TCTTCTCACCCTCACCAAAGAA 58.954 45.455 0.00 0.00 0.00 2.52
942 2583 2.930826 TCTCACCCTCACCAAAGAAC 57.069 50.000 0.00 0.00 0.00 3.01
943 2584 2.408565 TCTCACCCTCACCAAAGAACT 58.591 47.619 0.00 0.00 0.00 3.01
944 2585 3.583228 TCTCACCCTCACCAAAGAACTA 58.417 45.455 0.00 0.00 0.00 2.24
945 2586 3.323979 TCTCACCCTCACCAAAGAACTAC 59.676 47.826 0.00 0.00 0.00 2.73
946 2587 3.314693 TCACCCTCACCAAAGAACTACT 58.685 45.455 0.00 0.00 0.00 2.57
947 2588 4.485875 TCACCCTCACCAAAGAACTACTA 58.514 43.478 0.00 0.00 0.00 1.82
948 2589 4.282703 TCACCCTCACCAAAGAACTACTAC 59.717 45.833 0.00 0.00 0.00 2.73
949 2590 4.283722 CACCCTCACCAAAGAACTACTACT 59.716 45.833 0.00 0.00 0.00 2.57
950 2591 5.479375 CACCCTCACCAAAGAACTACTACTA 59.521 44.000 0.00 0.00 0.00 1.82
951 2592 6.014840 CACCCTCACCAAAGAACTACTACTAA 60.015 42.308 0.00 0.00 0.00 2.24
970 2611 0.743688 ATAGTCTCGTCAGCCAGCAG 59.256 55.000 0.00 0.00 0.00 4.24
971 2612 0.322546 TAGTCTCGTCAGCCAGCAGA 60.323 55.000 0.00 0.00 0.00 4.26
973 2614 1.011451 GTCTCGTCAGCCAGCAGAAC 61.011 60.000 0.00 0.00 0.00 3.01
974 2615 1.181741 TCTCGTCAGCCAGCAGAACT 61.182 55.000 0.00 0.00 0.00 3.01
975 2616 0.735632 CTCGTCAGCCAGCAGAACTC 60.736 60.000 0.00 0.00 0.00 3.01
976 2617 1.181741 TCGTCAGCCAGCAGAACTCT 61.182 55.000 0.00 0.00 0.00 3.24
977 2618 0.735632 CGTCAGCCAGCAGAACTCTC 60.736 60.000 0.00 0.00 0.00 3.20
983 2646 1.066286 GCCAGCAGAACTCTCACTCAT 60.066 52.381 0.00 0.00 0.00 2.90
1022 2686 0.172803 CATGAAGAGCAAGGCAAGCC 59.827 55.000 2.02 2.02 0.00 4.35
1025 2689 1.152483 AAGAGCAAGGCAAGCCCAA 60.152 52.632 7.62 0.00 36.58 4.12
1042 2714 3.545703 CCCAACTCTCTCTCTCTCTCTC 58.454 54.545 0.00 0.00 0.00 3.20
1044 2716 4.446371 CCAACTCTCTCTCTCTCTCTCTC 58.554 52.174 0.00 0.00 0.00 3.20
1046 2718 5.355596 CAACTCTCTCTCTCTCTCTCTCTC 58.644 50.000 0.00 0.00 0.00 3.20
1048 2720 4.892934 ACTCTCTCTCTCTCTCTCTCTCTC 59.107 50.000 0.00 0.00 0.00 3.20
1050 2722 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1052 2724 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1054 2726 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1056 2728 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1058 2730 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1060 2732 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1062 2734 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1064 2736 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1066 2738 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1067 2739 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1068 2740 6.101881 TCTCTCTCTCTCTCTCTCTCTCTCTA 59.898 46.154 0.00 0.00 0.00 2.43
1069 2741 6.857848 TCTCTCTCTCTCTCTCTCTCTCTAT 58.142 44.000 0.00 0.00 0.00 1.98
1070 2742 6.945435 TCTCTCTCTCTCTCTCTCTCTCTATC 59.055 46.154 0.00 0.00 0.00 2.08
1071 2743 6.857848 TCTCTCTCTCTCTCTCTCTCTATCT 58.142 44.000 0.00 0.00 0.00 1.98
1072 2744 6.945435 TCTCTCTCTCTCTCTCTCTCTATCTC 59.055 46.154 0.00 0.00 0.00 2.75
1073 2745 5.707764 TCTCTCTCTCTCTCTCTCTATCTCG 59.292 48.000 0.00 0.00 0.00 4.04
1074 2746 4.218635 TCTCTCTCTCTCTCTCTATCTCGC 59.781 50.000 0.00 0.00 0.00 5.03
1075 2747 4.152647 TCTCTCTCTCTCTCTATCTCGCT 58.847 47.826 0.00 0.00 0.00 4.93
1076 2748 4.218635 TCTCTCTCTCTCTCTATCTCGCTC 59.781 50.000 0.00 0.00 0.00 5.03
1077 2749 4.152647 TCTCTCTCTCTCTATCTCGCTCT 58.847 47.826 0.00 0.00 0.00 4.09
1078 2750 4.218635 TCTCTCTCTCTCTATCTCGCTCTC 59.781 50.000 0.00 0.00 0.00 3.20
1079 2751 4.152647 TCTCTCTCTCTATCTCGCTCTCT 58.847 47.826 0.00 0.00 0.00 3.10
1080 2752 4.218635 TCTCTCTCTCTATCTCGCTCTCTC 59.781 50.000 0.00 0.00 0.00 3.20
1081 2753 4.152647 TCTCTCTCTATCTCGCTCTCTCT 58.847 47.826 0.00 0.00 0.00 3.10
1082 2754 4.218635 TCTCTCTCTATCTCGCTCTCTCTC 59.781 50.000 0.00 0.00 0.00 3.20
1083 2755 4.152647 TCTCTCTATCTCGCTCTCTCTCT 58.847 47.826 0.00 0.00 0.00 3.10
1084 2756 4.218635 TCTCTCTATCTCGCTCTCTCTCTC 59.781 50.000 0.00 0.00 0.00 3.20
1085 2757 4.152647 TCTCTATCTCGCTCTCTCTCTCT 58.847 47.826 0.00 0.00 0.00 3.10
1086 2758 4.218635 TCTCTATCTCGCTCTCTCTCTCTC 59.781 50.000 0.00 0.00 0.00 3.20
1087 2759 4.152647 TCTATCTCGCTCTCTCTCTCTCT 58.847 47.826 0.00 0.00 0.00 3.10
1088 2760 2.890808 TCTCGCTCTCTCTCTCTCTC 57.109 55.000 0.00 0.00 0.00 3.20
1089 2761 2.388735 TCTCGCTCTCTCTCTCTCTCT 58.611 52.381 0.00 0.00 0.00 3.10
1090 2762 2.362397 TCTCGCTCTCTCTCTCTCTCTC 59.638 54.545 0.00 0.00 0.00 3.20
1091 2763 2.363680 CTCGCTCTCTCTCTCTCTCTCT 59.636 54.545 0.00 0.00 0.00 3.10
1092 2764 2.362397 TCGCTCTCTCTCTCTCTCTCTC 59.638 54.545 0.00 0.00 0.00 3.20
1096 2768 2.435805 TCTCTCTCTCTCTCTCTCTGCC 59.564 54.545 0.00 0.00 0.00 4.85
1161 2833 1.444933 TGATGGGTGAGAAAGGGTGT 58.555 50.000 0.00 0.00 0.00 4.16
1209 2881 0.905357 ACTACTGGGAGCACATGGAC 59.095 55.000 0.00 0.00 0.00 4.02
1261 2933 1.748122 CAAGATTCCCAGCAGCGCT 60.748 57.895 2.64 2.64 40.77 5.92
1279 2951 9.936805 AGCAGCGCTTTGTAAGTATCCAATACT 62.937 40.741 7.50 0.00 41.27 2.12
1286 2958 9.823647 CTTTGTAAGTATCCAATACTCTCACAT 57.176 33.333 0.35 0.00 44.94 3.21
1353 3025 5.017093 TCCAAATTGTTGATTTCCCCCTA 57.983 39.130 0.00 0.00 35.79 3.53
1452 3127 1.151668 GGCTCATCCGTGATGTATGC 58.848 55.000 11.91 13.16 40.55 3.14
1453 3128 1.541015 GGCTCATCCGTGATGTATGCA 60.541 52.381 18.88 0.00 40.55 3.96
1454 3129 2.420642 GCTCATCCGTGATGTATGCAT 58.579 47.619 3.79 3.79 40.55 3.96
1455 3130 2.159037 GCTCATCCGTGATGTATGCATG 59.841 50.000 10.16 0.00 40.55 4.06
1459 3134 2.145536 TCCGTGATGTATGCATGATGC 58.854 47.619 11.12 11.12 45.29 3.91
1478 3153 2.286950 TGCATCAGAAACGCAACACTTC 60.287 45.455 0.00 0.00 31.46 3.01
1529 3208 5.783360 TCTTACAAGATGGAACTTACCTCCA 59.217 40.000 0.00 0.00 46.86 3.86
1561 3240 4.277174 ACGGTACAAACTTGAAATGCATCA 59.723 37.500 0.00 0.00 0.00 3.07
1564 3243 6.389091 GGTACAAACTTGAAATGCATCATCA 58.611 36.000 0.00 5.27 0.00 3.07
1565 3244 7.037438 GGTACAAACTTGAAATGCATCATCAT 58.963 34.615 13.95 3.58 0.00 2.45
1566 3245 8.190122 GGTACAAACTTGAAATGCATCATCATA 58.810 33.333 13.95 6.57 0.00 2.15
1567 3246 9.013490 GTACAAACTTGAAATGCATCATCATAC 57.987 33.333 13.95 9.57 0.00 2.39
1568 3247 6.748658 ACAAACTTGAAATGCATCATCATACG 59.251 34.615 13.95 9.35 0.00 3.06
1572 3251 6.986231 ACTTGAAATGCATCATCATACGTAGA 59.014 34.615 13.95 0.00 0.00 2.59
1599 3278 5.790593 TCTGAACCTAACCATGTGACTAAC 58.209 41.667 0.00 0.00 0.00 2.34
1623 3302 1.470098 CTGCCAATTTTGTCTCCTCCG 59.530 52.381 0.00 0.00 0.00 4.63
1655 3334 1.205064 CGGACAAGTTTGCGAGCAG 59.795 57.895 0.00 0.00 0.00 4.24
1670 3349 0.392729 AGCAGCTTCATCAGGCAGAC 60.393 55.000 0.00 0.00 0.00 3.51
1678 3357 2.357575 ATCAGGCAGACGCAGAGCT 61.358 57.895 0.00 0.00 41.24 4.09
1680 3359 4.127040 AGGCAGACGCAGAGCTCG 62.127 66.667 8.37 4.60 41.24 5.03
1764 3443 3.187227 CCAATGACCTGTTCTTCAGTTCG 59.813 47.826 0.00 0.00 42.19 3.95
1961 3683 3.618690 ACAGGTTGAGCAATACTCTCC 57.381 47.619 0.00 0.00 46.41 3.71
1962 3684 2.093973 ACAGGTTGAGCAATACTCTCCG 60.094 50.000 0.00 0.00 46.41 4.63
1978 3700 4.037803 ACTCTCCGAGTGATGATTCTGATG 59.962 45.833 4.49 0.00 41.76 3.07
1979 3701 4.210331 TCTCCGAGTGATGATTCTGATGA 58.790 43.478 0.00 0.00 0.00 2.92
1980 3702 4.646492 TCTCCGAGTGATGATTCTGATGAA 59.354 41.667 0.00 0.00 36.54 2.57
1981 3703 4.941657 TCCGAGTGATGATTCTGATGAAG 58.058 43.478 0.00 0.00 35.44 3.02
1982 3704 4.646492 TCCGAGTGATGATTCTGATGAAGA 59.354 41.667 0.00 0.00 35.44 2.87
1983 3705 4.744137 CCGAGTGATGATTCTGATGAAGAC 59.256 45.833 0.00 0.00 35.44 3.01
1984 3706 4.440431 CGAGTGATGATTCTGATGAAGACG 59.560 45.833 0.00 0.00 35.44 4.18
1985 3707 5.586339 GAGTGATGATTCTGATGAAGACGA 58.414 41.667 0.00 0.00 35.44 4.20
1986 3708 5.347342 AGTGATGATTCTGATGAAGACGAC 58.653 41.667 0.00 0.00 35.44 4.34
1987 3709 4.205996 GTGATGATTCTGATGAAGACGACG 59.794 45.833 0.00 0.00 35.44 5.12
1988 3710 4.096382 TGATGATTCTGATGAAGACGACGA 59.904 41.667 0.00 0.00 35.44 4.20
1989 3711 3.759418 TGATTCTGATGAAGACGACGAC 58.241 45.455 0.00 0.00 35.44 4.34
1990 3712 3.190535 TGATTCTGATGAAGACGACGACA 59.809 43.478 0.00 0.00 35.44 4.35
1991 3713 3.636282 TTCTGATGAAGACGACGACAA 57.364 42.857 0.00 0.00 33.46 3.18
2010 3732 5.347907 CGACAATGATGATGATGATGACGAT 59.652 40.000 0.00 0.00 0.00 3.73
2011 3733 6.481954 ACAATGATGATGATGATGACGATG 57.518 37.500 0.00 0.00 0.00 3.84
2012 3734 6.228258 ACAATGATGATGATGATGACGATGA 58.772 36.000 0.00 0.00 0.00 2.92
2031 3768 4.950434 TGACGACGATGATACAAGTGTA 57.050 40.909 0.00 0.00 34.67 2.90
2049 3786 4.038763 AGTGTACCGTCTCAGTTGATTGAA 59.961 41.667 0.00 0.00 0.00 2.69
2054 3791 2.939103 CGTCTCAGTTGATTGAATCCCC 59.061 50.000 2.26 0.00 0.00 4.81
2058 3795 3.944015 CTCAGTTGATTGAATCCCCTCAC 59.056 47.826 2.26 0.00 0.00 3.51
2061 3798 4.157289 CAGTTGATTGAATCCCCTCACAAG 59.843 45.833 2.26 0.00 0.00 3.16
2064 3801 3.075882 TGATTGAATCCCCTCACAAGGTT 59.924 43.478 2.26 0.00 41.59 3.50
2090 3827 7.049799 CCACTTTAAGGAAATTCAGTGGAAA 57.950 36.000 18.97 2.06 46.51 3.13
2110 3847 2.583143 AGACCAAACCAAGTAAGGCAC 58.417 47.619 0.00 0.00 0.00 5.01
2113 3850 3.483421 ACCAAACCAAGTAAGGCACTAC 58.517 45.455 0.00 0.00 38.49 2.73
2120 3857 5.067954 ACCAAGTAAGGCACTACGATTTTT 58.932 37.500 0.00 0.00 38.49 1.94
2121 3858 5.048991 ACCAAGTAAGGCACTACGATTTTTG 60.049 40.000 0.00 0.00 38.49 2.44
2122 3859 4.680171 AGTAAGGCACTACGATTTTTGC 57.320 40.909 0.00 0.00 38.49 3.68
2123 3860 4.069304 AGTAAGGCACTACGATTTTTGCA 58.931 39.130 0.00 0.00 38.49 4.08
2126 3863 2.226437 AGGCACTACGATTTTTGCAGTG 59.774 45.455 0.00 0.00 36.02 3.66
2128 3865 3.266541 CACTACGATTTTTGCAGTGCA 57.733 42.857 15.37 15.37 36.47 4.57
2187 3991 6.419484 TTCTTGAGATCTTGGTGTAGTCAA 57.581 37.500 0.00 0.00 0.00 3.18
2197 4001 4.330944 TGGTGTAGTCAACTAACACAGG 57.669 45.455 17.05 0.00 34.83 4.00
2213 4021 3.265737 ACACAGGCCCATGTAAACTATGA 59.734 43.478 7.71 0.00 0.00 2.15
2221 4029 6.294176 GGCCCATGTAAACTATGAATGATCAC 60.294 42.308 0.00 0.00 38.69 3.06
2279 4087 2.134201 TAAGCTCGTGACACACTGTG 57.866 50.000 7.68 7.68 39.75 3.66
2280 4088 0.459899 AAGCTCGTGACACACTGTGA 59.540 50.000 16.30 0.00 36.96 3.58
2296 4104 1.270305 TGTGACAGGGAAAGAGCTTCG 60.270 52.381 0.00 0.00 34.56 3.79
2299 4110 1.000955 GACAGGGAAAGAGCTTCGTGA 59.999 52.381 0.00 0.00 34.56 4.35
2310 4121 2.548057 GAGCTTCGTGAATCACCAAACA 59.452 45.455 7.91 0.00 0.00 2.83
2522 4333 2.101249 CCACCTGCAACACAAGAACAAT 59.899 45.455 0.00 0.00 0.00 2.71
2812 4763 1.595929 GGCCAAGTTCGTCCGTGAA 60.596 57.895 0.00 0.00 0.00 3.18
2815 4766 1.265905 GCCAAGTTCGTCCGTGAAAAT 59.734 47.619 0.00 0.00 0.00 1.82
2823 4774 1.721489 CGTCCGTGAAAATGAACTGCG 60.721 52.381 0.00 0.00 0.00 5.18
2845 4796 1.201429 AGGGGGATGTCTGCGTCTTT 61.201 55.000 0.00 0.00 0.00 2.52
2879 4833 0.926846 CGCGAGGAATGAGAAGAAGC 59.073 55.000 0.00 0.00 0.00 3.86
2880 4834 1.470632 CGCGAGGAATGAGAAGAAGCT 60.471 52.381 0.00 0.00 0.00 3.74
2890 4844 0.902516 AGAAGAAGCTGGCGAGGACT 60.903 55.000 0.00 0.00 0.00 3.85
2897 4851 1.360551 CTGGCGAGGACTACGATGG 59.639 63.158 0.00 0.00 0.00 3.51
2900 4854 2.782222 GCGAGGACTACGATGGCCA 61.782 63.158 8.56 8.56 0.00 5.36
2949 4903 1.302993 GCCGGTTTGCCTTAGTGGA 60.303 57.895 1.90 0.00 38.35 4.02
2971 4927 0.550914 AAGTTCCTGCAGTGTGGGAA 59.449 50.000 13.81 6.62 36.86 3.97
3039 4995 2.028020 AGTGCCTAGTACTGAAACCTGC 60.028 50.000 5.39 0.00 0.00 4.85
3040 4996 2.028020 GTGCCTAGTACTGAAACCTGCT 60.028 50.000 5.39 0.00 0.00 4.24
3041 4997 2.028112 TGCCTAGTACTGAAACCTGCTG 60.028 50.000 5.39 0.00 0.00 4.41
3052 5008 0.846693 AACCTGCTGAACTGGGAGTT 59.153 50.000 0.00 0.00 41.95 3.01
3069 5025 1.002544 AGTTCTTAGCTGGTGTGAGCC 59.997 52.381 0.00 0.00 40.08 4.70
3112 5068 1.566231 GGAGGGGAAATCACCACTGAT 59.434 52.381 4.20 0.00 44.52 2.90
3113 5069 2.422093 GGAGGGGAAATCACCACTGATC 60.422 54.545 4.20 0.00 44.52 2.92
3114 5070 2.507471 GAGGGGAAATCACCACTGATCT 59.493 50.000 4.20 0.00 44.52 2.75
3141 5101 2.040544 AATGTCTTTCCGCTGCCCG 61.041 57.895 0.00 0.00 0.00 6.13
3253 5213 1.740025 GACATGAGCTGCCCTTTGTAC 59.260 52.381 0.00 0.00 0.00 2.90
3254 5214 1.352352 ACATGAGCTGCCCTTTGTACT 59.648 47.619 0.00 0.00 0.00 2.73
3255 5215 2.571653 ACATGAGCTGCCCTTTGTACTA 59.428 45.455 0.00 0.00 0.00 1.82
3296 5256 3.005554 CTGCATAACTCCTTGACAGTGG 58.994 50.000 0.00 0.00 0.00 4.00
3297 5257 2.637382 TGCATAACTCCTTGACAGTGGA 59.363 45.455 0.00 0.34 0.00 4.02
3298 5258 3.264193 TGCATAACTCCTTGACAGTGGAT 59.736 43.478 0.00 0.00 0.00 3.41
3331 5291 8.833493 TCTTCAACTATATGTCATCATGCTTTG 58.167 33.333 0.00 0.00 35.70 2.77
3403 5363 6.183360 GCTTTCGCCCCGCTTTATATATAAAT 60.183 38.462 16.41 0.00 32.36 1.40
3426 5388 0.950836 CGATCACAACAAGCACCCAA 59.049 50.000 0.00 0.00 0.00 4.12
3438 5400 1.960689 AGCACCCAATACAAACACACC 59.039 47.619 0.00 0.00 0.00 4.16
3439 5401 1.000394 GCACCCAATACAAACACACCC 60.000 52.381 0.00 0.00 0.00 4.61
3440 5402 2.311463 CACCCAATACAAACACACCCA 58.689 47.619 0.00 0.00 0.00 4.51
3442 5404 1.616374 CCCAATACAAACACACCCACC 59.384 52.381 0.00 0.00 0.00 4.61
3443 5405 2.311463 CCAATACAAACACACCCACCA 58.689 47.619 0.00 0.00 0.00 4.17
3444 5406 2.896685 CCAATACAAACACACCCACCAT 59.103 45.455 0.00 0.00 0.00 3.55
3485 5449 1.270305 GCAGGATACATAGGCGCTGAA 60.270 52.381 7.64 0.00 41.41 3.02
3503 5468 4.912395 GGCAGCAACACCACCCCA 62.912 66.667 0.00 0.00 0.00 4.96
3574 5539 2.744709 GGCGGCGCCTTCAGTAAA 60.745 61.111 41.44 0.00 46.69 2.01
3802 5768 2.591753 CCATGATGACCGGGCAGT 59.408 61.111 18.96 3.53 0.00 4.40
3809 5775 0.907704 ATGACCGGGCAGTACCAAGA 60.908 55.000 18.96 0.00 42.05 3.02
3895 5861 1.229209 ACACCACCTCACCCGAGAT 60.229 57.895 0.00 0.00 42.34 2.75
3919 5885 1.852067 CGCAACCCCAACGAAAGAGG 61.852 60.000 0.00 0.00 0.00 3.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
78 79 1.334960 CGGTTACAAAAGCACAGGCAG 60.335 52.381 0.00 0.00 44.61 4.85
84 86 1.951602 ACTTCCCGGTTACAAAAGCAC 59.048 47.619 0.00 0.00 32.47 4.40
96 98 4.630069 CACTGACAATACTAAACTTCCCGG 59.370 45.833 0.00 0.00 0.00 5.73
112 114 7.581213 AATTCTAACACAAAATCCACTGACA 57.419 32.000 0.00 0.00 0.00 3.58
121 124 7.461182 TCATCGGGAAATTCTAACACAAAAT 57.539 32.000 0.00 0.00 0.00 1.82
141 144 2.877168 GTCAGCAGGGACATTGATCATC 59.123 50.000 0.00 0.00 37.73 2.92
142 145 2.508716 AGTCAGCAGGGACATTGATCAT 59.491 45.455 0.00 0.00 40.29 2.45
143 146 1.911357 AGTCAGCAGGGACATTGATCA 59.089 47.619 0.00 0.00 40.29 2.92
144 147 2.093288 TGAGTCAGCAGGGACATTGATC 60.093 50.000 6.06 0.00 40.29 2.92
145 148 1.911357 TGAGTCAGCAGGGACATTGAT 59.089 47.619 6.06 0.00 40.29 2.57
146 149 1.351076 TGAGTCAGCAGGGACATTGA 58.649 50.000 6.06 0.00 40.29 2.57
147 150 2.286872 GATGAGTCAGCAGGGACATTG 58.713 52.381 2.86 0.00 40.29 2.82
148 151 1.211457 GGATGAGTCAGCAGGGACATT 59.789 52.381 11.09 0.00 40.29 2.71
149 152 0.835941 GGATGAGTCAGCAGGGACAT 59.164 55.000 11.09 0.00 40.29 3.06
150 153 1.607801 CGGATGAGTCAGCAGGGACA 61.608 60.000 11.09 0.00 40.29 4.02
151 154 1.142748 CGGATGAGTCAGCAGGGAC 59.857 63.158 11.09 0.00 38.08 4.46
152 155 1.000359 TCGGATGAGTCAGCAGGGA 60.000 57.895 11.09 1.38 0.00 4.20
153 156 1.142748 GTCGGATGAGTCAGCAGGG 59.857 63.158 11.09 0.00 0.00 4.45
154 157 0.247460 TTGTCGGATGAGTCAGCAGG 59.753 55.000 11.09 1.43 0.00 4.85
155 158 2.084610 TTTGTCGGATGAGTCAGCAG 57.915 50.000 11.09 6.44 0.00 4.24
156 159 2.542020 TTTTGTCGGATGAGTCAGCA 57.458 45.000 11.09 0.00 0.00 4.41
157 160 3.265791 AGATTTTGTCGGATGAGTCAGC 58.734 45.455 0.00 0.00 0.00 4.26
180 183 4.460263 AGTTTGTAACAGAGGCACATTCA 58.540 39.130 0.00 0.00 0.00 2.57
184 187 6.952773 AATTTAGTTTGTAACAGAGGCACA 57.047 33.333 0.00 0.00 0.00 4.57
185 188 7.174426 AGGTAATTTAGTTTGTAACAGAGGCAC 59.826 37.037 0.00 0.00 0.00 5.01
186 189 7.228590 AGGTAATTTAGTTTGTAACAGAGGCA 58.771 34.615 0.00 0.00 0.00 4.75
187 190 7.683437 AGGTAATTTAGTTTGTAACAGAGGC 57.317 36.000 0.00 0.00 0.00 4.70
293 296 7.256190 CCCCCAACGAATATCTGAAGTATCTTA 60.256 40.741 0.00 0.00 0.00 2.10
295 298 5.012148 CCCCCAACGAATATCTGAAGTATCT 59.988 44.000 0.00 0.00 0.00 1.98
296 299 5.011738 TCCCCCAACGAATATCTGAAGTATC 59.988 44.000 0.00 0.00 0.00 2.24
297 300 4.905456 TCCCCCAACGAATATCTGAAGTAT 59.095 41.667 0.00 0.00 0.00 2.12
298 301 4.100498 GTCCCCCAACGAATATCTGAAGTA 59.900 45.833 0.00 0.00 0.00 2.24
299 302 3.112263 TCCCCCAACGAATATCTGAAGT 58.888 45.455 0.00 0.00 0.00 3.01
300 303 3.118408 TGTCCCCCAACGAATATCTGAAG 60.118 47.826 0.00 0.00 0.00 3.02
302 305 2.473070 TGTCCCCCAACGAATATCTGA 58.527 47.619 0.00 0.00 0.00 3.27
303 306 3.492102 ATGTCCCCCAACGAATATCTG 57.508 47.619 0.00 0.00 0.00 2.90
304 307 4.225267 GGATATGTCCCCCAACGAATATCT 59.775 45.833 0.00 0.00 38.69 1.98
305 308 4.225267 AGGATATGTCCCCCAACGAATATC 59.775 45.833 4.63 0.00 46.34 1.63
306 309 4.175962 AGGATATGTCCCCCAACGAATAT 58.824 43.478 4.63 0.00 46.34 1.28
307 310 3.581332 GAGGATATGTCCCCCAACGAATA 59.419 47.826 4.63 0.00 46.34 1.75
308 311 2.372172 GAGGATATGTCCCCCAACGAAT 59.628 50.000 4.63 0.00 46.34 3.34
309 312 1.766496 GAGGATATGTCCCCCAACGAA 59.234 52.381 4.63 0.00 46.34 3.85
310 313 1.343580 TGAGGATATGTCCCCCAACGA 60.344 52.381 4.63 0.00 46.34 3.85
311 314 1.128200 TGAGGATATGTCCCCCAACG 58.872 55.000 4.63 0.00 46.34 4.10
312 315 4.993705 TTATGAGGATATGTCCCCCAAC 57.006 45.455 4.63 0.00 46.34 3.77
313 316 6.314120 CATTTTATGAGGATATGTCCCCCAA 58.686 40.000 4.63 0.00 46.34 4.12
314 317 5.751729 GCATTTTATGAGGATATGTCCCCCA 60.752 44.000 4.63 4.34 46.34 4.96
315 318 4.706962 GCATTTTATGAGGATATGTCCCCC 59.293 45.833 4.63 0.00 46.34 5.40
316 319 5.183904 GTGCATTTTATGAGGATATGTCCCC 59.816 44.000 4.63 0.00 46.34 4.81
317 320 5.769662 TGTGCATTTTATGAGGATATGTCCC 59.230 40.000 4.63 0.00 46.34 4.46
321 324 9.976511 AGAATTTGTGCATTTTATGAGGATATG 57.023 29.630 0.00 0.00 0.00 1.78
329 332 6.483385 TTGCCAGAATTTGTGCATTTTATG 57.517 33.333 0.00 0.00 34.44 1.90
330 333 6.316890 GGATTGCCAGAATTTGTGCATTTTAT 59.683 34.615 0.00 0.00 34.44 1.40
331 334 5.642919 GGATTGCCAGAATTTGTGCATTTTA 59.357 36.000 0.00 0.00 34.44 1.52
339 342 1.545582 CGTGGGATTGCCAGAATTTGT 59.454 47.619 0.00 0.00 35.15 2.83
344 347 1.818060 CATTTCGTGGGATTGCCAGAA 59.182 47.619 0.00 1.30 35.15 3.02
348 353 2.687935 ACATACATTTCGTGGGATTGCC 59.312 45.455 0.00 0.00 0.00 4.52
358 369 9.536558 TTCTCGAATTTTTACACATACATTTCG 57.463 29.630 0.00 0.00 35.90 3.46
419 431 8.524487 CACTGGTAGAGTACTTCAATCTTAAGT 58.476 37.037 1.63 0.00 40.25 2.24
422 434 8.107729 TCTCACTGGTAGAGTACTTCAATCTTA 58.892 37.037 0.00 0.00 34.73 2.10
425 437 6.761099 TCTCACTGGTAGAGTACTTCAATC 57.239 41.667 0.00 0.00 34.73 2.67
426 438 7.451877 TCTTTCTCACTGGTAGAGTACTTCAAT 59.548 37.037 0.00 0.00 34.73 2.57
428 440 6.304624 TCTTTCTCACTGGTAGAGTACTTCA 58.695 40.000 0.00 0.00 34.73 3.02
429 441 6.821031 TCTTTCTCACTGGTAGAGTACTTC 57.179 41.667 0.00 0.00 34.73 3.01
430 442 7.598759 TTTCTTTCTCACTGGTAGAGTACTT 57.401 36.000 0.00 0.00 34.73 2.24
431 443 7.598759 TTTTCTTTCTCACTGGTAGAGTACT 57.401 36.000 0.00 0.00 34.73 2.73
432 444 8.142551 TCTTTTTCTTTCTCACTGGTAGAGTAC 58.857 37.037 0.00 0.00 34.73 2.73
433 445 8.142551 GTCTTTTTCTTTCTCACTGGTAGAGTA 58.857 37.037 0.00 0.00 34.73 2.59
434 446 6.987404 GTCTTTTTCTTTCTCACTGGTAGAGT 59.013 38.462 0.00 0.00 34.73 3.24
435 447 6.986817 TGTCTTTTTCTTTCTCACTGGTAGAG 59.013 38.462 0.00 0.00 34.42 2.43
436 448 6.884832 TGTCTTTTTCTTTCTCACTGGTAGA 58.115 36.000 0.00 0.00 0.00 2.59
437 449 6.763610 ACTGTCTTTTTCTTTCTCACTGGTAG 59.236 38.462 0.00 0.00 0.00 3.18
438 450 6.650120 ACTGTCTTTTTCTTTCTCACTGGTA 58.350 36.000 0.00 0.00 0.00 3.25
439 451 5.501156 ACTGTCTTTTTCTTTCTCACTGGT 58.499 37.500 0.00 0.00 0.00 4.00
440 452 6.763610 AGTACTGTCTTTTTCTTTCTCACTGG 59.236 38.462 0.00 0.00 0.00 4.00
441 453 7.492669 TCAGTACTGTCTTTTTCTTTCTCACTG 59.507 37.037 21.99 0.00 0.00 3.66
442 454 7.492994 GTCAGTACTGTCTTTTTCTTTCTCACT 59.507 37.037 21.99 0.00 0.00 3.41
443 455 7.277981 TGTCAGTACTGTCTTTTTCTTTCTCAC 59.722 37.037 21.99 7.83 0.00 3.51
444 456 7.327975 TGTCAGTACTGTCTTTTTCTTTCTCA 58.672 34.615 21.99 0.00 0.00 3.27
445 457 7.492994 ACTGTCAGTACTGTCTTTTTCTTTCTC 59.507 37.037 21.99 0.00 32.87 2.87
446 458 7.331791 ACTGTCAGTACTGTCTTTTTCTTTCT 58.668 34.615 21.99 0.00 32.87 2.52
447 459 7.541122 ACTGTCAGTACTGTCTTTTTCTTTC 57.459 36.000 21.99 1.81 32.87 2.62
448 460 8.421673 GTACTGTCAGTACTGTCTTTTTCTTT 57.578 34.615 28.51 0.89 45.70 2.52
462 474 4.682778 AGTTTGCCAAGTACTGTCAGTA 57.317 40.909 8.70 8.70 0.00 2.74
463 475 3.560636 AGTTTGCCAAGTACTGTCAGT 57.439 42.857 10.99 10.99 0.00 3.41
464 476 5.700832 TGAATAGTTTGCCAAGTACTGTCAG 59.299 40.000 0.00 0.00 0.00 3.51
465 477 5.616270 TGAATAGTTTGCCAAGTACTGTCA 58.384 37.500 0.00 0.00 0.00 3.58
466 478 6.554334 TTGAATAGTTTGCCAAGTACTGTC 57.446 37.500 0.00 0.00 0.00 3.51
467 479 7.524717 AATTGAATAGTTTGCCAAGTACTGT 57.475 32.000 0.00 0.00 0.00 3.55
468 480 8.081633 TGAAATTGAATAGTTTGCCAAGTACTG 58.918 33.333 0.00 0.00 0.00 2.74
469 481 8.082242 GTGAAATTGAATAGTTTGCCAAGTACT 58.918 33.333 0.00 0.00 0.00 2.73
470 482 7.328493 GGTGAAATTGAATAGTTTGCCAAGTAC 59.672 37.037 0.00 0.00 0.00 2.73
471 483 7.014711 TGGTGAAATTGAATAGTTTGCCAAGTA 59.985 33.333 0.00 0.00 0.00 2.24
472 484 6.183360 TGGTGAAATTGAATAGTTTGCCAAGT 60.183 34.615 0.00 0.00 0.00 3.16
473 485 6.222389 TGGTGAAATTGAATAGTTTGCCAAG 58.778 36.000 0.00 0.00 0.00 3.61
474 486 6.166984 TGGTGAAATTGAATAGTTTGCCAA 57.833 33.333 0.00 0.00 0.00 4.52
475 487 5.798125 TGGTGAAATTGAATAGTTTGCCA 57.202 34.783 0.00 0.00 0.00 4.92
476 488 5.120674 GCTTGGTGAAATTGAATAGTTTGCC 59.879 40.000 0.00 0.00 0.00 4.52
477 489 5.695816 TGCTTGGTGAAATTGAATAGTTTGC 59.304 36.000 0.00 0.00 0.00 3.68
478 490 7.894376 ATGCTTGGTGAAATTGAATAGTTTG 57.106 32.000 0.00 0.00 0.00 2.93
479 491 7.388500 CCAATGCTTGGTGAAATTGAATAGTTT 59.612 33.333 6.74 0.00 45.93 2.66
480 492 6.875195 CCAATGCTTGGTGAAATTGAATAGTT 59.125 34.615 6.74 0.00 45.93 2.24
481 493 6.400568 CCAATGCTTGGTGAAATTGAATAGT 58.599 36.000 6.74 0.00 45.93 2.12
482 494 6.897259 CCAATGCTTGGTGAAATTGAATAG 57.103 37.500 6.74 0.00 45.93 1.73
496 508 5.759273 TGAAAAATCCAAGAACCAATGCTTG 59.241 36.000 0.00 0.00 40.81 4.01
497 509 5.927819 TGAAAAATCCAAGAACCAATGCTT 58.072 33.333 0.00 0.00 0.00 3.91
498 510 5.549742 TGAAAAATCCAAGAACCAATGCT 57.450 34.783 0.00 0.00 0.00 3.79
499 511 6.652062 AGATTGAAAAATCCAAGAACCAATGC 59.348 34.615 0.00 0.00 0.00 3.56
500 512 8.611654 AAGATTGAAAAATCCAAGAACCAATG 57.388 30.769 0.00 0.00 0.00 2.82
501 513 7.879677 GGAAGATTGAAAAATCCAAGAACCAAT 59.120 33.333 0.00 0.00 30.33 3.16
502 514 7.147585 TGGAAGATTGAAAAATCCAAGAACCAA 60.148 33.333 0.00 0.00 35.21 3.67
503 515 6.326064 TGGAAGATTGAAAAATCCAAGAACCA 59.674 34.615 0.00 0.00 35.21 3.67
504 516 6.758254 TGGAAGATTGAAAAATCCAAGAACC 58.242 36.000 0.00 0.00 35.21 3.62
505 517 8.715088 CATTGGAAGATTGAAAAATCCAAGAAC 58.285 33.333 10.82 0.00 44.61 3.01
506 518 7.388500 GCATTGGAAGATTGAAAAATCCAAGAA 59.612 33.333 10.82 0.00 44.61 2.52
507 519 6.875195 GCATTGGAAGATTGAAAAATCCAAGA 59.125 34.615 10.82 0.00 44.61 3.02
508 520 6.093082 GGCATTGGAAGATTGAAAAATCCAAG 59.907 38.462 10.82 5.28 44.61 3.61
509 521 5.939296 GGCATTGGAAGATTGAAAAATCCAA 59.061 36.000 7.88 7.88 45.09 3.53
510 522 5.248934 AGGCATTGGAAGATTGAAAAATCCA 59.751 36.000 0.00 0.00 35.99 3.41
511 523 5.737860 AGGCATTGGAAGATTGAAAAATCC 58.262 37.500 0.00 0.00 0.00 3.01
512 524 7.983484 ACATAGGCATTGGAAGATTGAAAAATC 59.017 33.333 0.00 0.00 0.00 2.17
513 525 7.854337 ACATAGGCATTGGAAGATTGAAAAAT 58.146 30.769 0.00 0.00 0.00 1.82
514 526 7.243604 ACATAGGCATTGGAAGATTGAAAAA 57.756 32.000 0.00 0.00 0.00 1.94
515 527 6.855763 ACATAGGCATTGGAAGATTGAAAA 57.144 33.333 0.00 0.00 0.00 2.29
516 528 6.855763 AACATAGGCATTGGAAGATTGAAA 57.144 33.333 0.00 0.00 0.00 2.69
517 529 7.953005 TTAACATAGGCATTGGAAGATTGAA 57.047 32.000 0.00 0.00 0.00 2.69
518 530 9.812347 ATATTAACATAGGCATTGGAAGATTGA 57.188 29.630 0.00 0.00 0.00 2.57
519 531 9.850628 CATATTAACATAGGCATTGGAAGATTG 57.149 33.333 0.00 0.00 0.00 2.67
520 532 9.592196 ACATATTAACATAGGCATTGGAAGATT 57.408 29.630 0.00 0.00 0.00 2.40
521 533 9.592196 AACATATTAACATAGGCATTGGAAGAT 57.408 29.630 0.00 0.00 0.00 2.40
522 534 8.995027 AACATATTAACATAGGCATTGGAAGA 57.005 30.769 0.00 0.00 0.00 2.87
525 537 9.814899 CAAAAACATATTAACATAGGCATTGGA 57.185 29.630 0.00 0.00 0.00 3.53
526 538 9.598517 ACAAAAACATATTAACATAGGCATTGG 57.401 29.630 0.00 0.00 0.00 3.16
541 553 9.869757 GGCATTAGAGGTTTTACAAAAACATAT 57.130 29.630 15.04 9.22 38.05 1.78
542 554 9.084533 AGGCATTAGAGGTTTTACAAAAACATA 57.915 29.630 15.04 4.56 38.05 2.29
543 555 7.962441 AGGCATTAGAGGTTTTACAAAAACAT 58.038 30.769 15.04 9.35 38.05 2.71
544 556 7.354751 AGGCATTAGAGGTTTTACAAAAACA 57.645 32.000 15.04 0.00 38.05 2.83
545 557 9.353999 CATAGGCATTAGAGGTTTTACAAAAAC 57.646 33.333 6.70 6.70 35.85 2.43
546 558 9.084533 ACATAGGCATTAGAGGTTTTACAAAAA 57.915 29.630 0.00 0.00 0.00 1.94
547 559 8.644374 ACATAGGCATTAGAGGTTTTACAAAA 57.356 30.769 0.00 0.00 0.00 2.44
548 560 9.169592 GTACATAGGCATTAGAGGTTTTACAAA 57.830 33.333 0.00 0.00 0.00 2.83
549 561 8.545472 AGTACATAGGCATTAGAGGTTTTACAA 58.455 33.333 0.00 0.00 0.00 2.41
550 562 7.985184 CAGTACATAGGCATTAGAGGTTTTACA 59.015 37.037 0.00 0.00 0.00 2.41
551 563 7.985752 ACAGTACATAGGCATTAGAGGTTTTAC 59.014 37.037 0.00 0.00 0.00 2.01
552 564 8.086143 ACAGTACATAGGCATTAGAGGTTTTA 57.914 34.615 0.00 0.00 0.00 1.52
553 565 6.958767 ACAGTACATAGGCATTAGAGGTTTT 58.041 36.000 0.00 0.00 0.00 2.43
554 566 6.561519 ACAGTACATAGGCATTAGAGGTTT 57.438 37.500 0.00 0.00 0.00 3.27
555 567 7.290248 ACATACAGTACATAGGCATTAGAGGTT 59.710 37.037 0.00 0.00 0.00 3.50
556 568 6.782988 ACATACAGTACATAGGCATTAGAGGT 59.217 38.462 0.00 0.00 0.00 3.85
557 569 7.233389 ACATACAGTACATAGGCATTAGAGG 57.767 40.000 0.00 0.00 0.00 3.69
582 594 8.849168 CCAGCAAATCCATTGACAATACTATTA 58.151 33.333 0.00 0.00 41.85 0.98
583 595 7.201938 CCCAGCAAATCCATTGACAATACTATT 60.202 37.037 0.00 0.00 41.85 1.73
584 596 6.266103 CCCAGCAAATCCATTGACAATACTAT 59.734 38.462 0.00 0.00 41.85 2.12
585 597 5.593909 CCCAGCAAATCCATTGACAATACTA 59.406 40.000 0.00 0.00 41.85 1.82
603 615 2.325484 TGTAAGAGAAGTGACCCAGCA 58.675 47.619 0.00 0.00 0.00 4.41
604 616 3.402628 TTGTAAGAGAAGTGACCCAGC 57.597 47.619 0.00 0.00 0.00 4.85
605 617 5.180117 CACAATTGTAAGAGAAGTGACCCAG 59.820 44.000 11.53 0.00 0.00 4.45
606 618 5.063204 CACAATTGTAAGAGAAGTGACCCA 58.937 41.667 11.53 0.00 0.00 4.51
607 619 5.049405 CACACAATTGTAAGAGAAGTGACCC 60.049 44.000 11.53 0.00 33.30 4.46
608 620 5.560953 GCACACAATTGTAAGAGAAGTGACC 60.561 44.000 20.80 6.17 33.30 4.02
609 621 5.237344 AGCACACAATTGTAAGAGAAGTGAC 59.763 40.000 20.80 13.98 33.30 3.67
610 622 5.237127 CAGCACACAATTGTAAGAGAAGTGA 59.763 40.000 20.80 0.00 33.30 3.41
611 623 5.446709 CAGCACACAATTGTAAGAGAAGTG 58.553 41.667 11.53 13.76 33.30 3.16
612 624 4.023707 GCAGCACACAATTGTAAGAGAAGT 60.024 41.667 11.53 0.00 33.30 3.01
613 625 4.023792 TGCAGCACACAATTGTAAGAGAAG 60.024 41.667 11.53 0.00 33.30 2.85
614 626 3.882288 TGCAGCACACAATTGTAAGAGAA 59.118 39.130 11.53 0.00 33.30 2.87
615 627 3.475575 TGCAGCACACAATTGTAAGAGA 58.524 40.909 11.53 0.00 33.30 3.10
616 628 3.902261 TGCAGCACACAATTGTAAGAG 57.098 42.857 11.53 1.10 33.30 2.85
620 632 2.027385 TGGTTGCAGCACACAATTGTA 58.973 42.857 11.53 0.00 33.30 2.41
625 637 1.077140 TCCTGGTTGCAGCACACAA 60.077 52.632 2.05 0.00 0.00 3.33
629 641 3.368571 GCCTCCTGGTTGCAGCAC 61.369 66.667 2.05 0.00 35.27 4.40
650 662 7.652524 ATCAAAGTGACTCTGATCTTAGCTA 57.347 36.000 0.00 0.00 0.00 3.32
662 684 8.589335 TGAAGTAACTGTAATCAAAGTGACTC 57.411 34.615 0.00 0.00 37.16 3.36
665 687 8.988934 GTCATGAAGTAACTGTAATCAAAGTGA 58.011 33.333 0.00 0.00 0.00 3.41
695 717 9.466497 ACAGTGATTCATTCAAGTACCATAAAT 57.534 29.630 0.00 0.00 35.70 1.40
698 720 9.599866 CTTACAGTGATTCATTCAAGTACCATA 57.400 33.333 0.00 0.00 35.70 2.74
699 721 7.554118 CCTTACAGTGATTCATTCAAGTACCAT 59.446 37.037 0.00 0.00 35.70 3.55
701 723 7.103641 TCCTTACAGTGATTCATTCAAGTACC 58.896 38.462 0.00 0.00 35.70 3.34
703 725 9.739276 ATTTCCTTACAGTGATTCATTCAAGTA 57.261 29.630 0.00 0.00 35.70 2.24
704 726 8.641498 ATTTCCTTACAGTGATTCATTCAAGT 57.359 30.769 0.00 0.00 35.70 3.16
714 736 8.897752 GCTCAGAATTTATTTCCTTACAGTGAT 58.102 33.333 0.00 0.00 34.67 3.06
715 737 7.882791 TGCTCAGAATTTATTTCCTTACAGTGA 59.117 33.333 0.00 0.00 34.67 3.41
716 738 7.965107 GTGCTCAGAATTTATTTCCTTACAGTG 59.035 37.037 0.00 0.00 34.67 3.66
717 739 7.885399 AGTGCTCAGAATTTATTTCCTTACAGT 59.115 33.333 0.00 0.00 34.67 3.55
718 740 8.180267 CAGTGCTCAGAATTTATTTCCTTACAG 58.820 37.037 0.00 0.00 34.67 2.74
719 741 7.665559 ACAGTGCTCAGAATTTATTTCCTTACA 59.334 33.333 0.00 0.00 34.67 2.41
720 742 8.045176 ACAGTGCTCAGAATTTATTTCCTTAC 57.955 34.615 0.00 0.00 34.67 2.34
721 743 7.336931 GGACAGTGCTCAGAATTTATTTCCTTA 59.663 37.037 0.00 0.00 34.67 2.69
722 744 6.151817 GGACAGTGCTCAGAATTTATTTCCTT 59.848 38.462 0.00 0.00 34.67 3.36
723 745 5.649831 GGACAGTGCTCAGAATTTATTTCCT 59.350 40.000 0.00 0.00 34.67 3.36
724 746 5.415701 TGGACAGTGCTCAGAATTTATTTCC 59.584 40.000 0.00 0.00 34.67 3.13
725 747 6.150140 AGTGGACAGTGCTCAGAATTTATTTC 59.850 38.462 0.00 0.00 34.31 2.17
726 748 6.006449 AGTGGACAGTGCTCAGAATTTATTT 58.994 36.000 0.00 0.00 0.00 1.40
727 749 5.564550 AGTGGACAGTGCTCAGAATTTATT 58.435 37.500 0.00 0.00 0.00 1.40
728 750 5.171339 AGTGGACAGTGCTCAGAATTTAT 57.829 39.130 0.00 0.00 0.00 1.40
729 751 4.040339 TGAGTGGACAGTGCTCAGAATTTA 59.960 41.667 0.00 0.00 34.72 1.40
730 752 3.181451 TGAGTGGACAGTGCTCAGAATTT 60.181 43.478 0.00 0.00 34.72 1.82
731 753 2.369860 TGAGTGGACAGTGCTCAGAATT 59.630 45.455 0.00 0.00 34.72 2.17
732 754 1.973515 TGAGTGGACAGTGCTCAGAAT 59.026 47.619 0.00 0.00 34.72 2.40
733 755 1.413118 TGAGTGGACAGTGCTCAGAA 58.587 50.000 0.00 0.00 34.72 3.02
734 756 1.069204 GTTGAGTGGACAGTGCTCAGA 59.931 52.381 0.00 0.00 39.92 3.27
738 760 2.700897 AGTAAGTTGAGTGGACAGTGCT 59.299 45.455 0.00 0.00 0.00 4.40
752 774 9.237187 GAGGTAAGTTGGTAGTACTAGTAAGTT 57.763 37.037 3.61 16.99 37.15 2.66
758 780 5.827267 GGGAGAGGTAAGTTGGTAGTACTAG 59.173 48.000 1.87 0.00 0.00 2.57
759 781 5.340360 GGGGAGAGGTAAGTTGGTAGTACTA 60.340 48.000 0.00 0.00 0.00 1.82
760 782 4.571577 GGGGAGAGGTAAGTTGGTAGTACT 60.572 50.000 0.00 0.00 0.00 2.73
761 783 3.703556 GGGGAGAGGTAAGTTGGTAGTAC 59.296 52.174 0.00 0.00 0.00 2.73
766 2403 1.985895 CTTGGGGAGAGGTAAGTTGGT 59.014 52.381 0.00 0.00 0.00 3.67
771 2408 4.844349 TTTCATCTTGGGGAGAGGTAAG 57.156 45.455 0.00 0.00 37.93 2.34
774 2411 5.796502 TTAATTTCATCTTGGGGAGAGGT 57.203 39.130 0.00 0.00 37.93 3.85
775 2412 5.951747 TGTTTAATTTCATCTTGGGGAGAGG 59.048 40.000 0.00 0.00 37.93 3.69
777 2414 7.285401 GCTATGTTTAATTTCATCTTGGGGAGA 59.715 37.037 0.00 0.00 39.13 3.71
778 2415 7.068593 TGCTATGTTTAATTTCATCTTGGGGAG 59.931 37.037 0.00 0.00 0.00 4.30
779 2416 6.894654 TGCTATGTTTAATTTCATCTTGGGGA 59.105 34.615 0.00 0.00 0.00 4.81
787 2424 9.090692 GCAGATTTGTGCTATGTTTAATTTCAT 57.909 29.630 0.00 0.00 40.54 2.57
788 2425 7.545265 GGCAGATTTGTGCTATGTTTAATTTCA 59.455 33.333 0.00 0.00 43.45 2.69
789 2426 7.010460 GGGCAGATTTGTGCTATGTTTAATTTC 59.990 37.037 0.00 0.00 43.45 2.17
790 2427 6.818142 GGGCAGATTTGTGCTATGTTTAATTT 59.182 34.615 0.00 0.00 43.45 1.82
793 2430 5.016173 AGGGCAGATTTGTGCTATGTTTAA 58.984 37.500 0.00 0.00 43.45 1.52
807 2447 2.616458 GGGGTCACCAGGGCAGATT 61.616 63.158 0.00 0.00 39.85 2.40
821 2461 1.838073 CGCCTACTGAAAGGTGGGGT 61.838 60.000 6.51 0.00 42.41 4.95
836 2476 0.759346 GGTATTCATGGACCTCGCCT 59.241 55.000 0.00 0.00 32.58 5.52
839 2479 1.541233 GCTGGGTATTCATGGACCTCG 60.541 57.143 10.84 5.31 35.91 4.63
859 2499 3.778955 AGTGGAGACCAGTGGACG 58.221 61.111 18.40 0.00 35.61 4.79
867 2507 1.896465 AGTTACAGCTCAGTGGAGACC 59.104 52.381 0.00 0.00 44.26 3.85
874 2515 6.852420 TTCACCTATAAGTTACAGCTCAGT 57.148 37.500 0.00 0.00 0.00 3.41
889 2530 9.950496 CTGCATACCTAAATAGATTTCACCTAT 57.050 33.333 0.00 0.00 0.00 2.57
907 2548 4.434520 GGTGAGAAGAGTAACTGCATACC 58.565 47.826 0.00 0.00 0.00 2.73
913 2554 3.056465 GGTGAGGGTGAGAAGAGTAACTG 60.056 52.174 0.00 0.00 0.00 3.16
922 2563 2.777692 AGTTCTTTGGTGAGGGTGAGAA 59.222 45.455 0.00 0.00 0.00 2.87
923 2564 2.408565 AGTTCTTTGGTGAGGGTGAGA 58.591 47.619 0.00 0.00 0.00 3.27
925 2566 3.314693 AGTAGTTCTTTGGTGAGGGTGA 58.685 45.455 0.00 0.00 0.00 4.02
926 2567 3.771577 AGTAGTTCTTTGGTGAGGGTG 57.228 47.619 0.00 0.00 0.00 4.61
927 2568 4.490706 AGTAGTAGTTCTTTGGTGAGGGT 58.509 43.478 0.00 0.00 0.00 4.34
928 2569 6.600882 TTAGTAGTAGTTCTTTGGTGAGGG 57.399 41.667 0.00 0.00 0.00 4.30
929 2570 8.968969 ACTATTAGTAGTAGTTCTTTGGTGAGG 58.031 37.037 0.00 0.00 39.36 3.86
931 2572 9.750783 AGACTATTAGTAGTAGTTCTTTGGTGA 57.249 33.333 6.77 0.00 41.19 4.02
933 2574 8.891720 CGAGACTATTAGTAGTAGTTCTTTGGT 58.108 37.037 6.77 0.00 41.19 3.67
934 2575 8.891720 ACGAGACTATTAGTAGTAGTTCTTTGG 58.108 37.037 6.77 0.00 41.19 3.28
935 2576 9.919348 GACGAGACTATTAGTAGTAGTTCTTTG 57.081 37.037 6.77 3.78 41.19 2.77
936 2577 9.664332 TGACGAGACTATTAGTAGTAGTTCTTT 57.336 33.333 6.77 0.00 41.19 2.52
937 2578 9.316730 CTGACGAGACTATTAGTAGTAGTTCTT 57.683 37.037 6.77 1.89 41.19 2.52
938 2579 7.439056 GCTGACGAGACTATTAGTAGTAGTTCT 59.561 40.741 6.77 5.88 41.19 3.01
939 2580 7.307337 GGCTGACGAGACTATTAGTAGTAGTTC 60.307 44.444 6.77 6.08 41.19 3.01
940 2581 6.482973 GGCTGACGAGACTATTAGTAGTAGTT 59.517 42.308 6.77 0.00 41.19 2.24
941 2582 5.990996 GGCTGACGAGACTATTAGTAGTAGT 59.009 44.000 5.10 5.10 41.19 2.73
942 2583 5.990386 TGGCTGACGAGACTATTAGTAGTAG 59.010 44.000 0.00 0.00 41.19 2.57
943 2584 5.922053 TGGCTGACGAGACTATTAGTAGTA 58.078 41.667 0.00 0.00 41.19 1.82
944 2585 4.778579 TGGCTGACGAGACTATTAGTAGT 58.221 43.478 0.00 0.00 43.76 2.73
945 2586 4.319911 GCTGGCTGACGAGACTATTAGTAG 60.320 50.000 0.00 0.00 0.00 2.57
946 2587 3.564644 GCTGGCTGACGAGACTATTAGTA 59.435 47.826 0.00 0.00 0.00 1.82
947 2588 2.359531 GCTGGCTGACGAGACTATTAGT 59.640 50.000 0.00 0.00 0.00 2.24
948 2589 2.359214 TGCTGGCTGACGAGACTATTAG 59.641 50.000 0.00 0.00 0.00 1.73
949 2590 2.359214 CTGCTGGCTGACGAGACTATTA 59.641 50.000 0.00 0.00 0.00 0.98
950 2591 1.135915 CTGCTGGCTGACGAGACTATT 59.864 52.381 0.00 0.00 0.00 1.73
951 2592 0.743688 CTGCTGGCTGACGAGACTAT 59.256 55.000 0.00 0.00 0.00 2.12
970 2611 5.398603 TTCTTCCTGATGAGTGAGAGTTC 57.601 43.478 0.00 0.00 0.00 3.01
971 2612 5.483231 TGATTCTTCCTGATGAGTGAGAGTT 59.517 40.000 0.00 0.00 0.00 3.01
973 2614 5.452216 CCTGATTCTTCCTGATGAGTGAGAG 60.452 48.000 0.00 0.00 0.00 3.20
974 2615 4.405036 CCTGATTCTTCCTGATGAGTGAGA 59.595 45.833 0.00 0.00 0.00 3.27
975 2616 4.443175 CCCTGATTCTTCCTGATGAGTGAG 60.443 50.000 0.00 0.00 0.00 3.51
976 2617 3.453717 CCCTGATTCTTCCTGATGAGTGA 59.546 47.826 0.00 0.00 0.00 3.41
977 2618 3.453717 TCCCTGATTCTTCCTGATGAGTG 59.546 47.826 0.00 0.00 0.00 3.51
983 2646 2.577563 TGCATTCCCTGATTCTTCCTGA 59.422 45.455 0.00 0.00 0.00 3.86
1022 2686 4.163078 AGAGAGAGAGAGAGAGAGAGTTGG 59.837 50.000 0.00 0.00 0.00 3.77
1025 2689 4.877773 AGAGAGAGAGAGAGAGAGAGAGT 58.122 47.826 0.00 0.00 0.00 3.24
1042 2714 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1044 2716 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1046 2718 6.947733 AGATAGAGAGAGAGAGAGAGAGAGAG 59.052 46.154 0.00 0.00 0.00 3.20
1048 2720 6.128035 CGAGATAGAGAGAGAGAGAGAGAGAG 60.128 50.000 0.00 0.00 0.00 3.20
1050 2722 5.621104 GCGAGATAGAGAGAGAGAGAGAGAG 60.621 52.000 0.00 0.00 0.00 3.20
1052 2724 4.219507 AGCGAGATAGAGAGAGAGAGAGAG 59.780 50.000 0.00 0.00 0.00 3.20
1054 2726 4.219507 AGAGCGAGATAGAGAGAGAGAGAG 59.780 50.000 0.00 0.00 0.00 3.20
1056 2728 4.219507 AGAGAGCGAGATAGAGAGAGAGAG 59.780 50.000 0.00 0.00 0.00 3.20
1058 2730 4.219507 AGAGAGAGCGAGATAGAGAGAGAG 59.780 50.000 0.00 0.00 0.00 3.20
1060 2732 4.219507 AGAGAGAGAGCGAGATAGAGAGAG 59.780 50.000 0.00 0.00 0.00 3.20
1062 2734 4.219507 AGAGAGAGAGAGCGAGATAGAGAG 59.780 50.000 0.00 0.00 0.00 3.20
1064 2736 4.219507 AGAGAGAGAGAGAGCGAGATAGAG 59.780 50.000 0.00 0.00 0.00 2.43
1066 2738 4.219507 AGAGAGAGAGAGAGAGCGAGATAG 59.780 50.000 0.00 0.00 0.00 2.08
1067 2739 4.152647 AGAGAGAGAGAGAGAGCGAGATA 58.847 47.826 0.00 0.00 0.00 1.98
1068 2740 2.968574 AGAGAGAGAGAGAGAGCGAGAT 59.031 50.000 0.00 0.00 0.00 2.75
1069 2741 2.362397 GAGAGAGAGAGAGAGAGCGAGA 59.638 54.545 0.00 0.00 0.00 4.04
1070 2742 2.363680 AGAGAGAGAGAGAGAGAGCGAG 59.636 54.545 0.00 0.00 0.00 5.03
1071 2743 2.362397 GAGAGAGAGAGAGAGAGAGCGA 59.638 54.545 0.00 0.00 0.00 4.93
1072 2744 2.363680 AGAGAGAGAGAGAGAGAGAGCG 59.636 54.545 0.00 0.00 0.00 5.03
1073 2745 3.726607 CAGAGAGAGAGAGAGAGAGAGC 58.273 54.545 0.00 0.00 0.00 4.09
1074 2746 3.494048 GGCAGAGAGAGAGAGAGAGAGAG 60.494 56.522 0.00 0.00 0.00 3.20
1075 2747 2.435805 GGCAGAGAGAGAGAGAGAGAGA 59.564 54.545 0.00 0.00 0.00 3.10
1076 2748 2.804572 CGGCAGAGAGAGAGAGAGAGAG 60.805 59.091 0.00 0.00 0.00 3.20
1077 2749 1.138859 CGGCAGAGAGAGAGAGAGAGA 59.861 57.143 0.00 0.00 0.00 3.10
1078 2750 1.134401 ACGGCAGAGAGAGAGAGAGAG 60.134 57.143 0.00 0.00 0.00 3.20
1079 2751 0.908910 ACGGCAGAGAGAGAGAGAGA 59.091 55.000 0.00 0.00 0.00 3.10
1080 2752 1.016627 CACGGCAGAGAGAGAGAGAG 58.983 60.000 0.00 0.00 0.00 3.20
1081 2753 0.393673 CCACGGCAGAGAGAGAGAGA 60.394 60.000 0.00 0.00 0.00 3.10
1082 2754 2.003658 GCCACGGCAGAGAGAGAGAG 62.004 65.000 2.36 0.00 41.49 3.20
1083 2755 2.049185 GCCACGGCAGAGAGAGAGA 61.049 63.158 2.36 0.00 41.49 3.10
1084 2756 2.051518 AGCCACGGCAGAGAGAGAG 61.052 63.158 11.35 0.00 44.88 3.20
1085 2757 2.036414 AGCCACGGCAGAGAGAGA 59.964 61.111 11.35 0.00 44.88 3.10
1086 2758 2.183811 CAGCCACGGCAGAGAGAG 59.816 66.667 11.35 0.00 44.88 3.20
1087 2759 2.283173 TCAGCCACGGCAGAGAGA 60.283 61.111 11.35 0.00 44.88 3.10
1091 2763 2.685017 ATCCTCAGCCACGGCAGA 60.685 61.111 11.35 6.93 44.88 4.26
1092 2764 2.513204 CATCCTCAGCCACGGCAG 60.513 66.667 11.35 1.82 44.88 4.85
1096 2768 0.957395 AAGCAACATCCTCAGCCACG 60.957 55.000 0.00 0.00 0.00 4.94
1161 2833 0.604780 GCCACTTCTTGCAGCTCTCA 60.605 55.000 0.00 0.00 0.00 3.27
1209 2881 1.871080 AGAACTTGGTCTTGCTCACG 58.129 50.000 0.00 0.00 0.00 4.35
1261 2933 9.599866 CATGTGAGAGTATTGGATACTTACAAA 57.400 33.333 12.98 8.22 45.64 2.83
1279 2951 4.897509 ACAGAGTTCAATCCATGTGAGA 57.102 40.909 0.00 0.00 0.00 3.27
1286 2958 8.154203 TCAACTATTGTTACAGAGTTCAATCCA 58.846 33.333 10.49 0.00 34.60 3.41
1452 3127 2.836479 TGCGTTTCTGATGCATCATG 57.164 45.000 28.81 21.28 45.11 3.07
1459 3134 3.548587 CAGAAGTGTTGCGTTTCTGATG 58.451 45.455 7.50 0.00 46.71 3.07
1503 3178 6.070710 GGAGGTAAGTTCCATCTTGTAAGACT 60.071 42.308 0.00 0.00 37.98 3.24
1510 3185 7.938140 TTATTTGGAGGTAAGTTCCATCTTG 57.062 36.000 0.00 0.00 43.87 3.02
1529 3208 7.513371 TTCAAGTTTGTACCGTCCATTATTT 57.487 32.000 0.00 0.00 0.00 1.40
1540 3219 6.389091 TGATGATGCATTTCAAGTTTGTACC 58.611 36.000 0.00 0.00 0.00 3.34
1551 3230 6.815641 AGGATCTACGTATGATGATGCATTTC 59.184 38.462 13.81 1.90 31.20 2.17
1572 3251 4.080863 GTCACATGGTTAGGTTCAGAGGAT 60.081 45.833 0.00 0.00 0.00 3.24
1599 3278 0.109132 GAGACAAAATTGGCAGGCGG 60.109 55.000 1.22 0.00 39.18 6.13
1623 3302 0.101759 TGTCCGGTATGCGCTAAGAC 59.898 55.000 9.73 7.72 0.00 3.01
1655 3334 1.703438 CTGCGTCTGCCTGATGAAGC 61.703 60.000 0.00 0.00 41.78 3.86
1656 3335 0.108472 TCTGCGTCTGCCTGATGAAG 60.108 55.000 0.00 0.00 41.78 3.02
1670 3349 3.729965 AATCCCTGCGAGCTCTGCG 62.730 63.158 20.27 15.74 34.24 5.18
1678 3357 1.198094 TCCAGGTCAAATCCCTGCGA 61.198 55.000 0.83 0.00 46.73 5.10
1680 3359 1.467920 CTTCCAGGTCAAATCCCTGC 58.532 55.000 0.83 0.00 46.73 4.85
1696 3375 2.903547 TTTCGCCGCTTGGTGCTTC 61.904 57.895 0.00 0.00 43.26 3.86
1764 3443 2.826674 TGACAAAATCTCCCCATCCC 57.173 50.000 0.00 0.00 0.00 3.85
1961 3683 4.440431 CGTCTTCATCAGAATCATCACTCG 59.560 45.833 0.00 0.00 31.28 4.18
1962 3684 5.458452 GTCGTCTTCATCAGAATCATCACTC 59.542 44.000 0.00 0.00 31.28 3.51
1978 3700 4.105486 TCATCATCATTGTCGTCGTCTTC 58.895 43.478 0.00 0.00 0.00 2.87
1979 3701 4.110036 TCATCATCATTGTCGTCGTCTT 57.890 40.909 0.00 0.00 0.00 3.01
1980 3702 3.782889 TCATCATCATTGTCGTCGTCT 57.217 42.857 0.00 0.00 0.00 4.18
1981 3703 4.044426 TCATCATCATCATTGTCGTCGTC 58.956 43.478 0.00 0.00 0.00 4.20
1982 3704 4.045636 TCATCATCATCATTGTCGTCGT 57.954 40.909 0.00 0.00 0.00 4.34
1983 3705 4.682860 TCATCATCATCATCATTGTCGTCG 59.317 41.667 0.00 0.00 0.00 5.12
1984 3706 5.388164 CGTCATCATCATCATCATTGTCGTC 60.388 44.000 0.00 0.00 0.00 4.20
1985 3707 4.446719 CGTCATCATCATCATCATTGTCGT 59.553 41.667 0.00 0.00 0.00 4.34
1986 3708 4.682860 TCGTCATCATCATCATCATTGTCG 59.317 41.667 0.00 0.00 0.00 4.35
1987 3709 6.367969 TCATCGTCATCATCATCATCATTGTC 59.632 38.462 0.00 0.00 0.00 3.18
1988 3710 6.147328 GTCATCGTCATCATCATCATCATTGT 59.853 38.462 0.00 0.00 0.00 2.71
1989 3711 6.534934 GTCATCGTCATCATCATCATCATTG 58.465 40.000 0.00 0.00 0.00 2.82
1990 3712 5.347907 CGTCATCGTCATCATCATCATCATT 59.652 40.000 0.00 0.00 0.00 2.57
1991 3713 4.863131 CGTCATCGTCATCATCATCATCAT 59.137 41.667 0.00 0.00 0.00 2.45
2010 3732 3.842732 ACACTTGTATCATCGTCGTCA 57.157 42.857 0.00 0.00 0.00 4.35
2011 3733 4.033684 GGTACACTTGTATCATCGTCGTC 58.966 47.826 0.00 0.00 32.07 4.20
2012 3734 3.486375 CGGTACACTTGTATCATCGTCGT 60.486 47.826 0.00 0.00 31.23 4.34
2031 3768 3.600388 GGATTCAATCAACTGAGACGGT 58.400 45.455 0.00 0.00 0.00 4.83
2054 3791 5.130350 TCCTTAAAGTGGAAACCTTGTGAG 58.870 41.667 0.00 0.00 0.00 3.51
2064 3801 6.648879 CCACTGAATTTCCTTAAAGTGGAA 57.351 37.500 20.39 2.25 45.95 3.53
2086 3823 3.005472 GCCTTACTTGGTTTGGTCTTTCC 59.995 47.826 0.00 0.00 0.00 3.13
2088 3825 3.383505 GTGCCTTACTTGGTTTGGTCTTT 59.616 43.478 0.00 0.00 0.00 2.52
2090 3827 2.174854 AGTGCCTTACTTGGTTTGGTCT 59.825 45.455 0.00 0.00 35.67 3.85
2120 3857 4.831107 TCTCATGTATTAGTTGCACTGCA 58.169 39.130 0.00 0.00 36.47 4.41
2121 3858 5.525012 TCATCTCATGTATTAGTTGCACTGC 59.475 40.000 0.00 0.00 0.00 4.40
2122 3859 7.725818 ATCATCTCATGTATTAGTTGCACTG 57.274 36.000 0.00 0.00 0.00 3.66
2123 3860 9.650539 GATATCATCTCATGTATTAGTTGCACT 57.349 33.333 0.00 0.00 0.00 4.40
2126 3863 9.096160 CAGGATATCATCTCATGTATTAGTTGC 57.904 37.037 4.83 0.00 0.00 4.17
2157 3895 5.222213 ACACCAAGATCTCAAGAAAGGGATT 60.222 40.000 0.00 0.00 0.00 3.01
2187 3991 3.073946 AGTTTACATGGGCCTGTGTTAGT 59.926 43.478 17.88 8.83 0.00 2.24
2197 4001 6.488006 AGTGATCATTCATAGTTTACATGGGC 59.512 38.462 0.00 0.00 33.56 5.36
2248 4056 9.079833 TGTGTCACGAGCTTATAAATTTAGTAC 57.920 33.333 3.94 0.00 0.00 2.73
2250 4058 7.817962 AGTGTGTCACGAGCTTATAAATTTAGT 59.182 33.333 3.94 0.00 39.64 2.24
2260 4068 1.679153 TCACAGTGTGTCACGAGCTTA 59.321 47.619 22.29 0.00 39.64 3.09
2261 4069 0.459899 TCACAGTGTGTCACGAGCTT 59.540 50.000 22.29 0.00 39.64 3.74
2262 4070 0.249073 GTCACAGTGTGTCACGAGCT 60.249 55.000 22.29 0.00 39.64 4.09
2263 4071 0.527600 TGTCACAGTGTGTCACGAGC 60.528 55.000 22.29 6.56 39.64 5.03
2265 4073 0.102300 CCTGTCACAGTGTGTCACGA 59.898 55.000 22.29 0.00 39.64 4.35
2266 4074 0.875908 CCCTGTCACAGTGTGTCACG 60.876 60.000 22.29 15.72 39.64 4.35
2269 4077 2.158957 TCTTTCCCTGTCACAGTGTGTC 60.159 50.000 22.29 17.43 34.79 3.67
2279 4087 1.000955 TCACGAAGCTCTTTCCCTGTC 59.999 52.381 0.00 0.00 31.82 3.51
2280 4088 1.048601 TCACGAAGCTCTTTCCCTGT 58.951 50.000 0.00 0.00 31.82 4.00
2296 4104 3.365364 GCTGCTACTGTTTGGTGATTCAC 60.365 47.826 8.34 8.34 0.00 3.18
2299 4110 3.077359 GAGCTGCTACTGTTTGGTGATT 58.923 45.455 0.15 0.00 0.00 2.57
2324 4135 4.631377 TCAGTTTCCTCATGCTTAACATCG 59.369 41.667 0.00 0.00 36.64 3.84
2551 4362 1.522668 TGCTGCAAGTGCGTTAGATT 58.477 45.000 0.00 0.00 45.83 2.40
2812 4763 2.040544 CCCCTCGCGCAGTTCATTT 61.041 57.895 8.75 0.00 0.00 2.32
2823 4774 4.899239 CGCAGACATCCCCCTCGC 62.899 72.222 0.00 0.00 0.00 5.03
2845 4796 2.102438 CGCGCCTTTGATCAGCTCA 61.102 57.895 0.00 0.00 0.00 4.26
2879 4833 1.360551 CCATCGTAGTCCTCGCCAG 59.639 63.158 0.00 0.00 0.00 4.85
2880 4834 2.782222 GCCATCGTAGTCCTCGCCA 61.782 63.158 0.00 0.00 0.00 5.69
2897 4851 2.903855 CCTGGCGACATGGATGGC 60.904 66.667 0.00 0.00 41.51 4.40
2900 4854 1.383109 TCCTCCTGGCGACATGGAT 60.383 57.895 9.51 0.00 41.51 3.41
2908 4862 2.726351 GGACTTCCTCCTCCTGGCG 61.726 68.421 0.00 0.00 35.89 5.69
2910 4864 0.615850 GTTGGACTTCCTCCTCCTGG 59.384 60.000 0.00 0.00 40.26 4.45
2932 4886 0.036306 AGTCCACTAAGGCAAACCGG 59.964 55.000 0.00 0.00 42.76 5.28
2949 4903 1.072331 CCCACACTGCAGGAACTTAGT 59.928 52.381 19.93 1.80 34.60 2.24
2971 4927 1.818060 TGCCAAAATATTCAGCGCACT 59.182 42.857 11.47 0.00 0.00 4.40
3052 5008 1.185618 ACGGCTCACACCAGCTAAGA 61.186 55.000 0.00 0.00 39.58 2.10
3069 5025 3.291585 GTTCAGAAACATTCAGCACACG 58.708 45.455 0.00 0.00 35.36 4.49
3112 5068 4.083324 GCGGAAAGACATTGTTGATGAAGA 60.083 41.667 0.00 0.00 39.15 2.87
3113 5069 4.083110 AGCGGAAAGACATTGTTGATGAAG 60.083 41.667 0.00 0.00 39.15 3.02
3114 5070 3.820467 AGCGGAAAGACATTGTTGATGAA 59.180 39.130 0.00 0.00 39.15 2.57
3141 5101 3.557595 GTGCACTACTCACATCTAATGGC 59.442 47.826 10.32 0.00 34.73 4.40
3146 5106 3.024547 GGAGGTGCACTACTCACATCTA 58.975 50.000 17.98 0.00 42.72 1.98
3194 5154 9.167311 GAAACACAAAGACAGATCTTACCATAT 57.833 33.333 0.00 0.00 44.82 1.78
3253 5213 6.164176 CAGTGTTTTACCCTTAGTGAGGTAG 58.836 44.000 0.00 0.00 44.71 3.18
3254 5214 5.511888 GCAGTGTTTTACCCTTAGTGAGGTA 60.512 44.000 0.00 0.00 44.71 3.08
3255 5215 4.745783 GCAGTGTTTTACCCTTAGTGAGGT 60.746 45.833 0.00 0.00 44.71 3.85
3403 5363 1.225855 GTGCTTGTTGTGATCGGTGA 58.774 50.000 0.00 0.00 0.00 4.02
3426 5388 4.521256 GTGTTATGGTGGGTGTGTTTGTAT 59.479 41.667 0.00 0.00 0.00 2.29
3438 5400 0.237235 GTGTGCGTGTGTTATGGTGG 59.763 55.000 0.00 0.00 0.00 4.61
3439 5401 0.940833 TGTGTGCGTGTGTTATGGTG 59.059 50.000 0.00 0.00 0.00 4.17
3440 5402 0.941542 GTGTGTGCGTGTGTTATGGT 59.058 50.000 0.00 0.00 0.00 3.55
3442 5404 0.237235 GGGTGTGTGCGTGTGTTATG 59.763 55.000 0.00 0.00 0.00 1.90
3443 5405 0.179043 TGGGTGTGTGCGTGTGTTAT 60.179 50.000 0.00 0.00 0.00 1.89
3444 5406 0.812014 CTGGGTGTGTGCGTGTGTTA 60.812 55.000 0.00 0.00 0.00 2.41
3485 5449 4.603535 GGGGTGGTGTTGCTGCCT 62.604 66.667 0.00 0.00 0.00 4.75
3503 5468 1.000955 CTCTTCGTGGTGGTAGTGCTT 59.999 52.381 0.00 0.00 0.00 3.91
3703 5668 5.011738 AGGTGAAAACCTGTTCTATCTTCGA 59.988 40.000 0.00 0.00 38.98 3.71
3802 5768 0.887387 GCAAAGCCCGTGTCTTGGTA 60.887 55.000 0.00 0.00 0.00 3.25
3859 5825 1.377202 TCAAGGTCTTGGATGCCGC 60.377 57.895 10.39 0.00 40.78 6.53
3919 5885 4.388499 TGGGACCTTTCCGCTCGC 62.388 66.667 0.00 0.00 43.94 5.03


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.