Multiple sequence alignment - TraesCS5D01G077600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G077600 chr5D 100.000 6055 0 0 1 6055 77575653 77581707 0.000000e+00 11182
1 TraesCS5D01G077600 chr5D 72.639 1345 296 50 2113 3424 475692355 475693660 4.430000e-101 379
2 TraesCS5D01G077600 chr5D 97.196 214 4 2 2 214 437079538 437079750 1.600000e-95 361
3 TraesCS5D01G077600 chr5D 95.536 224 9 1 2 225 105016922 105017144 2.080000e-94 357
4 TraesCS5D01G077600 chr5A 93.978 5746 174 66 415 6055 74476362 74482040 0.000000e+00 8536
5 TraesCS5D01G077600 chr5A 74.081 1034 222 26 2113 3126 595144392 595145399 3.420000e-102 383
6 TraesCS5D01G077600 chr5B 95.998 4798 137 21 1290 6055 87228123 87232897 0.000000e+00 7745
7 TraesCS5D01G077600 chr5B 92.487 559 31 7 5498 6055 672545669 672545121 0.000000e+00 789
8 TraesCS5D01G077600 chr5B 89.677 465 16 18 799 1239 87227666 87228122 1.140000e-156 564
9 TraesCS5D01G077600 chr5B 90.179 336 25 4 410 745 87227218 87227545 1.210000e-116 431
10 TraesCS5D01G077600 chr5B 74.489 1027 208 33 2113 3115 583176410 583177406 4.400000e-106 396
11 TraesCS5D01G077600 chr6B 92.487 559 31 7 5498 6055 599816942 599817490 0.000000e+00 789
12 TraesCS5D01G077600 chr2B 92.487 559 30 8 5498 6055 183539326 183538779 0.000000e+00 789
13 TraesCS5D01G077600 chr2B 90.476 210 20 0 201 410 9769395 9769186 1.660000e-70 278
14 TraesCS5D01G077600 chr7D 99.010 202 1 1 1 202 50813887 50814087 1.600000e-95 361
15 TraesCS5D01G077600 chr7D 88.073 218 20 3 198 412 405875671 405875885 2.800000e-63 254
16 TraesCS5D01G077600 chr6D 99.495 198 1 0 1 198 51771512 51771709 1.600000e-95 361
17 TraesCS5D01G077600 chr6D 98.529 204 3 0 1 204 456525319 456525116 1.600000e-95 361
18 TraesCS5D01G077600 chr6D 95.872 218 9 0 1 218 12178106 12177889 2.680000e-93 353
19 TraesCS5D01G077600 chr6D 88.479 217 20 3 198 410 267198361 267198576 2.170000e-64 257
20 TraesCS5D01G077600 chr1D 98.529 204 3 0 1 204 418540110 418540313 1.600000e-95 361
21 TraesCS5D01G077600 chr1D 87.624 202 21 4 198 397 235669239 235669438 1.310000e-56 231
22 TraesCS5D01G077600 chr1D 86.047 215 22 8 202 411 19558074 19558285 2.200000e-54 224
23 TraesCS5D01G077600 chr4D 96.714 213 7 0 1 213 485980637 485980849 7.460000e-94 355
24 TraesCS5D01G077600 chr3D 97.143 210 6 0 1 210 283925925 283926134 7.460000e-94 355
25 TraesCS5D01G077600 chr3D 87.215 219 20 4 198 411 74197955 74197740 6.060000e-60 243
26 TraesCS5D01G077600 chr2A 86.758 219 20 9 198 411 617093163 617093377 1.010000e-57 235
27 TraesCS5D01G077600 chr4B 86.916 214 21 3 203 410 478431596 478431808 3.650000e-57 233
28 TraesCS5D01G077600 chr2D 86.854 213 20 7 198 405 35335290 35335081 1.310000e-56 231


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G077600 chr5D 77575653 77581707 6054 False 11182.000000 11182 100.000000 1 6055 1 chr5D.!!$F1 6054
1 TraesCS5D01G077600 chr5D 475692355 475693660 1305 False 379.000000 379 72.639000 2113 3424 1 chr5D.!!$F4 1311
2 TraesCS5D01G077600 chr5A 74476362 74482040 5678 False 8536.000000 8536 93.978000 415 6055 1 chr5A.!!$F1 5640
3 TraesCS5D01G077600 chr5A 595144392 595145399 1007 False 383.000000 383 74.081000 2113 3126 1 chr5A.!!$F2 1013
4 TraesCS5D01G077600 chr5B 87227218 87232897 5679 False 2913.333333 7745 91.951333 410 6055 3 chr5B.!!$F2 5645
5 TraesCS5D01G077600 chr5B 672545121 672545669 548 True 789.000000 789 92.487000 5498 6055 1 chr5B.!!$R1 557
6 TraesCS5D01G077600 chr5B 583176410 583177406 996 False 396.000000 396 74.489000 2113 3115 1 chr5B.!!$F1 1002
7 TraesCS5D01G077600 chr6B 599816942 599817490 548 False 789.000000 789 92.487000 5498 6055 1 chr6B.!!$F1 557
8 TraesCS5D01G077600 chr2B 183538779 183539326 547 True 789.000000 789 92.487000 5498 6055 1 chr2B.!!$R2 557

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
313 314 0.031917 TGTATCGGGCCCACCTCTTA 60.032 55.000 24.92 0.11 36.97 2.10 F
315 316 0.471211 TATCGGGCCCACCTCTTAGG 60.471 60.000 24.92 1.11 42.49 2.69 F
355 356 0.691332 TGGCCCACCGTTGTACATTA 59.309 50.000 0.00 0.00 39.70 1.90 F
1257 1406 1.005630 GTGAAGCCAGTGAGCGAGT 60.006 57.895 0.00 0.00 38.01 4.18 F
2399 2626 0.617249 CAGCTGGGACTCCTCCTCTT 60.617 60.000 5.57 0.00 36.68 2.85 F
2848 3078 0.248289 GCGCCAAGTACTCCTACCAA 59.752 55.000 0.00 0.00 0.00 3.67 F
3856 4089 1.415672 TTGCTGGGGGTCGTCTCTTT 61.416 55.000 0.00 0.00 0.00 2.52 F
4393 4626 2.012673 CAGGCAAATGGAGCACTAGAC 58.987 52.381 0.00 0.00 0.00 2.59 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1743 1932 2.092904 CTGGGTGGGTGGTGGGATTT 62.093 60.000 0.00 0.0 0.00 2.17 R
2308 2520 2.345760 GGCGTCGAGGTGGGAGTAA 61.346 63.158 7.01 0.0 0.00 2.24 R
2399 2626 0.963225 TCGGACAATGTGAAGGACGA 59.037 50.000 0.00 0.0 0.00 4.20 R
2401 2628 1.079503 GCTCGGACAATGTGAAGGAC 58.920 55.000 0.00 0.0 0.00 3.85 R
4081 4314 1.747355 GTTCTGTTGAGCCCCATCATG 59.253 52.381 0.00 0.0 0.00 3.07 R
4393 4626 2.420058 AAAAGGAAGCCTCGGGTATG 57.580 50.000 0.00 0.0 30.89 2.39 R
5019 5252 1.293062 AGGGACAGTCATCCAGCAAT 58.707 50.000 2.17 0.0 40.96 3.56 R
5573 5807 1.686355 TGCACCGTCAAAATTGGAGT 58.314 45.000 0.00 0.0 0.00 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.818787 GTCCGTTCGGCGCTAGGA 61.819 66.667 7.64 7.54 39.71 2.94
18 19 2.831742 TCCGTTCGGCGCTAGGAT 60.832 61.111 7.64 0.00 39.71 3.24
19 20 2.354773 CCGTTCGGCGCTAGGATC 60.355 66.667 7.64 1.16 39.71 3.36
20 21 2.411701 CGTTCGGCGCTAGGATCA 59.588 61.111 7.64 0.00 0.00 2.92
21 22 1.007271 CGTTCGGCGCTAGGATCAT 60.007 57.895 7.64 0.00 0.00 2.45
22 23 1.004277 CGTTCGGCGCTAGGATCATC 61.004 60.000 7.64 0.00 0.00 2.92
23 24 1.004277 GTTCGGCGCTAGGATCATCG 61.004 60.000 7.64 0.00 0.00 3.84
24 25 2.126307 CGGCGCTAGGATCATCGG 60.126 66.667 7.64 0.00 0.00 4.18
25 26 2.920645 CGGCGCTAGGATCATCGGT 61.921 63.158 7.64 0.00 0.00 4.69
26 27 1.373497 GGCGCTAGGATCATCGGTG 60.373 63.158 7.64 0.00 0.00 4.94
27 28 1.660355 GCGCTAGGATCATCGGTGA 59.340 57.895 0.00 0.00 39.04 4.02
29 30 1.337260 GCGCTAGGATCATCGGTGATT 60.337 52.381 13.46 0.00 44.96 2.57
30 31 2.868044 GCGCTAGGATCATCGGTGATTT 60.868 50.000 13.46 7.21 44.96 2.17
31 32 2.733552 CGCTAGGATCATCGGTGATTTG 59.266 50.000 13.46 4.89 44.96 2.32
32 33 3.070018 GCTAGGATCATCGGTGATTTGG 58.930 50.000 13.46 7.76 44.96 3.28
33 34 3.244215 GCTAGGATCATCGGTGATTTGGA 60.244 47.826 13.46 0.00 44.96 3.53
34 35 4.564406 GCTAGGATCATCGGTGATTTGGAT 60.564 45.833 13.46 0.35 44.96 3.41
35 36 4.013267 AGGATCATCGGTGATTTGGATC 57.987 45.455 13.46 0.00 44.96 3.36
36 37 3.392285 AGGATCATCGGTGATTTGGATCA 59.608 43.478 13.46 0.00 44.96 2.92
46 47 3.766151 TGATTTGGATCACGACGAGTAC 58.234 45.455 0.00 0.00 37.37 2.73
47 48 2.251869 TTTGGATCACGACGAGTACG 57.748 50.000 0.00 0.00 45.75 3.67
48 49 1.441738 TTGGATCACGACGAGTACGA 58.558 50.000 0.00 0.00 42.66 3.43
49 50 0.723414 TGGATCACGACGAGTACGAC 59.277 55.000 0.00 0.00 42.66 4.34
50 51 1.005340 GGATCACGACGAGTACGACT 58.995 55.000 0.00 0.00 42.66 4.18
51 52 1.005137 GGATCACGACGAGTACGACTC 60.005 57.143 0.00 0.00 41.71 3.36
52 53 1.005137 GATCACGACGAGTACGACTCC 60.005 57.143 0.00 0.00 42.12 3.85
53 54 0.319813 TCACGACGAGTACGACTCCA 60.320 55.000 0.00 0.00 42.12 3.86
54 55 0.725686 CACGACGAGTACGACTCCAT 59.274 55.000 0.00 0.00 42.12 3.41
55 56 1.005340 ACGACGAGTACGACTCCATC 58.995 55.000 0.00 6.63 42.12 3.51
56 57 1.004595 CGACGAGTACGACTCCATCA 58.995 55.000 8.73 0.00 42.12 3.07
57 58 1.395954 CGACGAGTACGACTCCATCAA 59.604 52.381 8.73 0.00 42.12 2.57
58 59 2.783333 GACGAGTACGACTCCATCAAC 58.217 52.381 8.73 0.00 42.12 3.18
59 60 1.471684 ACGAGTACGACTCCATCAACC 59.528 52.381 8.73 0.00 42.12 3.77
60 61 1.202268 CGAGTACGACTCCATCAACCC 60.202 57.143 8.73 0.00 42.12 4.11
61 62 1.136500 GAGTACGACTCCATCAACCCC 59.864 57.143 0.00 0.00 39.28 4.95
62 63 0.179119 GTACGACTCCATCAACCCCG 60.179 60.000 0.00 0.00 0.00 5.73
63 64 0.612732 TACGACTCCATCAACCCCGT 60.613 55.000 0.00 0.00 0.00 5.28
64 65 1.295423 CGACTCCATCAACCCCGTT 59.705 57.895 0.00 0.00 0.00 4.44
65 66 0.739813 CGACTCCATCAACCCCGTTC 60.740 60.000 0.00 0.00 0.00 3.95
66 67 0.613777 GACTCCATCAACCCCGTTCT 59.386 55.000 0.00 0.00 0.00 3.01
67 68 0.613777 ACTCCATCAACCCCGTTCTC 59.386 55.000 0.00 0.00 0.00 2.87
68 69 0.905357 CTCCATCAACCCCGTTCTCT 59.095 55.000 0.00 0.00 0.00 3.10
69 70 1.279271 CTCCATCAACCCCGTTCTCTT 59.721 52.381 0.00 0.00 0.00 2.85
70 71 1.003118 TCCATCAACCCCGTTCTCTTG 59.997 52.381 0.00 0.00 0.00 3.02
71 72 1.003118 CCATCAACCCCGTTCTCTTGA 59.997 52.381 0.00 0.00 0.00 3.02
72 73 2.552155 CCATCAACCCCGTTCTCTTGAA 60.552 50.000 0.00 0.00 0.00 2.69
73 74 2.249844 TCAACCCCGTTCTCTTGAAC 57.750 50.000 0.00 0.00 46.59 3.18
81 82 0.164002 GTTCTCTTGAACGCTTCCGC 59.836 55.000 0.00 0.00 42.39 5.54
82 83 0.033504 TTCTCTTGAACGCTTCCGCT 59.966 50.000 0.00 0.00 38.22 5.52
83 84 0.388649 TCTCTTGAACGCTTCCGCTC 60.389 55.000 0.00 0.00 38.22 5.03
84 85 1.678269 CTCTTGAACGCTTCCGCTCG 61.678 60.000 0.00 0.00 38.22 5.03
85 86 3.354499 CTTGAACGCTTCCGCTCGC 62.354 63.158 0.00 0.00 38.22 5.03
91 92 2.331805 GCTTCCGCTCGCGATCTA 59.668 61.111 10.36 0.00 42.83 1.98
92 93 2.011881 GCTTCCGCTCGCGATCTAC 61.012 63.158 10.36 0.00 42.83 2.59
93 94 1.355563 CTTCCGCTCGCGATCTACA 59.644 57.895 10.36 0.00 42.83 2.74
94 95 0.248498 CTTCCGCTCGCGATCTACAA 60.248 55.000 10.36 0.00 42.83 2.41
95 96 0.248498 TTCCGCTCGCGATCTACAAG 60.248 55.000 10.36 0.00 42.83 3.16
96 97 1.658717 CCGCTCGCGATCTACAAGG 60.659 63.158 10.36 0.00 42.83 3.61
97 98 1.658717 CGCTCGCGATCTACAAGGG 60.659 63.158 10.36 0.00 42.83 3.95
98 99 1.437986 GCTCGCGATCTACAAGGGT 59.562 57.895 10.36 0.00 0.00 4.34
99 100 0.666913 GCTCGCGATCTACAAGGGTA 59.333 55.000 10.36 0.00 0.00 3.69
100 101 1.269998 GCTCGCGATCTACAAGGGTAT 59.730 52.381 10.36 0.00 0.00 2.73
101 102 2.922758 GCTCGCGATCTACAAGGGTATG 60.923 54.545 10.36 0.00 0.00 2.39
102 103 2.293677 CTCGCGATCTACAAGGGTATGT 59.706 50.000 10.36 0.00 37.32 2.29
103 104 3.479489 TCGCGATCTACAAGGGTATGTA 58.521 45.455 3.71 0.00 34.75 2.29
112 113 4.408182 ACAAGGGTATGTAGATGCACTC 57.592 45.455 0.00 0.00 25.83 3.51
113 114 3.134804 ACAAGGGTATGTAGATGCACTCC 59.865 47.826 0.00 0.00 25.83 3.85
114 115 2.330216 AGGGTATGTAGATGCACTCCC 58.670 52.381 0.00 0.00 35.94 4.30
115 116 1.348036 GGGTATGTAGATGCACTCCCC 59.652 57.143 0.00 0.00 32.31 4.81
116 117 2.330216 GGTATGTAGATGCACTCCCCT 58.670 52.381 0.00 0.00 0.00 4.79
117 118 2.706190 GGTATGTAGATGCACTCCCCTT 59.294 50.000 0.00 0.00 0.00 3.95
118 119 3.244249 GGTATGTAGATGCACTCCCCTTC 60.244 52.174 0.00 0.00 0.00 3.46
119 120 1.204146 TGTAGATGCACTCCCCTTCC 58.796 55.000 0.00 0.00 0.00 3.46
120 121 0.470341 GTAGATGCACTCCCCTTCCC 59.530 60.000 0.00 0.00 0.00 3.97
121 122 0.694444 TAGATGCACTCCCCTTCCCC 60.694 60.000 0.00 0.00 0.00 4.81
122 123 2.003548 GATGCACTCCCCTTCCCCT 61.004 63.158 0.00 0.00 0.00 4.79
123 124 1.988982 GATGCACTCCCCTTCCCCTC 61.989 65.000 0.00 0.00 0.00 4.30
124 125 3.787001 GCACTCCCCTTCCCCTCG 61.787 72.222 0.00 0.00 0.00 4.63
125 126 2.284699 CACTCCCCTTCCCCTCGT 60.285 66.667 0.00 0.00 0.00 4.18
126 127 1.918800 CACTCCCCTTCCCCTCGTT 60.919 63.158 0.00 0.00 0.00 3.85
127 128 1.918800 ACTCCCCTTCCCCTCGTTG 60.919 63.158 0.00 0.00 0.00 4.10
128 129 3.327404 TCCCCTTCCCCTCGTTGC 61.327 66.667 0.00 0.00 0.00 4.17
129 130 3.330720 CCCCTTCCCCTCGTTGCT 61.331 66.667 0.00 0.00 0.00 3.91
130 131 1.993391 CCCCTTCCCCTCGTTGCTA 60.993 63.158 0.00 0.00 0.00 3.49
131 132 1.522569 CCCTTCCCCTCGTTGCTAG 59.477 63.158 0.00 0.00 0.00 3.42
132 133 0.976073 CCCTTCCCCTCGTTGCTAGA 60.976 60.000 0.00 0.00 0.00 2.43
133 134 1.123928 CCTTCCCCTCGTTGCTAGAT 58.876 55.000 0.00 0.00 0.00 1.98
134 135 1.486726 CCTTCCCCTCGTTGCTAGATT 59.513 52.381 0.00 0.00 0.00 2.40
135 136 2.698797 CCTTCCCCTCGTTGCTAGATTA 59.301 50.000 0.00 0.00 0.00 1.75
136 137 3.492829 CCTTCCCCTCGTTGCTAGATTAC 60.493 52.174 0.00 0.00 0.00 1.89
137 138 3.028094 TCCCCTCGTTGCTAGATTACT 57.972 47.619 0.00 0.00 0.00 2.24
138 139 2.957006 TCCCCTCGTTGCTAGATTACTC 59.043 50.000 0.00 0.00 0.00 2.59
139 140 2.036089 CCCCTCGTTGCTAGATTACTCC 59.964 54.545 0.00 0.00 0.00 3.85
140 141 2.693591 CCCTCGTTGCTAGATTACTCCA 59.306 50.000 0.00 0.00 0.00 3.86
141 142 3.322254 CCCTCGTTGCTAGATTACTCCAT 59.678 47.826 0.00 0.00 0.00 3.41
142 143 4.523173 CCCTCGTTGCTAGATTACTCCATA 59.477 45.833 0.00 0.00 0.00 2.74
143 144 5.336055 CCCTCGTTGCTAGATTACTCCATAG 60.336 48.000 0.00 0.00 0.00 2.23
144 145 5.473846 CCTCGTTGCTAGATTACTCCATAGA 59.526 44.000 0.00 0.00 0.00 1.98
145 146 6.151985 CCTCGTTGCTAGATTACTCCATAGAT 59.848 42.308 0.00 0.00 0.00 1.98
146 147 7.309499 CCTCGTTGCTAGATTACTCCATAGATT 60.309 40.741 0.00 0.00 0.00 2.40
147 148 7.371159 TCGTTGCTAGATTACTCCATAGATTG 58.629 38.462 0.00 0.00 0.00 2.67
148 149 7.230712 TCGTTGCTAGATTACTCCATAGATTGA 59.769 37.037 0.00 0.00 0.00 2.57
149 150 8.031864 CGTTGCTAGATTACTCCATAGATTGAT 58.968 37.037 0.00 0.00 0.00 2.57
150 151 9.364989 GTTGCTAGATTACTCCATAGATTGATC 57.635 37.037 0.00 0.00 0.00 2.92
151 152 8.891985 TGCTAGATTACTCCATAGATTGATCT 57.108 34.615 0.00 0.00 40.86 2.75
152 153 9.319060 TGCTAGATTACTCCATAGATTGATCTT 57.681 33.333 0.00 0.00 38.32 2.40
153 154 9.585099 GCTAGATTACTCCATAGATTGATCTTG 57.415 37.037 0.00 0.00 38.32 3.02
155 156 8.503428 AGATTACTCCATAGATTGATCTTGGT 57.497 34.615 15.48 6.45 38.32 3.67
156 157 8.373981 AGATTACTCCATAGATTGATCTTGGTG 58.626 37.037 15.48 15.28 38.32 4.17
157 158 7.675161 TTACTCCATAGATTGATCTTGGTGA 57.325 36.000 19.38 6.63 38.32 4.02
158 159 6.760440 ACTCCATAGATTGATCTTGGTGAT 57.240 37.500 19.38 0.00 38.32 3.06
159 160 6.531923 ACTCCATAGATTGATCTTGGTGATG 58.468 40.000 19.38 10.22 38.32 3.07
160 161 5.311265 TCCATAGATTGATCTTGGTGATGC 58.689 41.667 15.48 0.00 38.32 3.91
161 162 4.153655 CCATAGATTGATCTTGGTGATGCG 59.846 45.833 0.00 0.00 38.32 4.73
162 163 3.272574 AGATTGATCTTGGTGATGCGT 57.727 42.857 0.00 0.00 35.14 5.24
163 164 4.406648 AGATTGATCTTGGTGATGCGTA 57.593 40.909 0.00 0.00 35.14 4.42
164 165 4.375272 AGATTGATCTTGGTGATGCGTAG 58.625 43.478 0.00 0.00 35.14 3.51
165 166 3.885724 TTGATCTTGGTGATGCGTAGA 57.114 42.857 0.00 0.00 35.14 2.59
166 167 3.885724 TGATCTTGGTGATGCGTAGAA 57.114 42.857 0.00 0.00 35.14 2.10
167 168 4.200838 TGATCTTGGTGATGCGTAGAAA 57.799 40.909 0.00 0.00 35.14 2.52
168 169 4.574892 TGATCTTGGTGATGCGTAGAAAA 58.425 39.130 0.00 0.00 35.14 2.29
169 170 5.185454 TGATCTTGGTGATGCGTAGAAAAT 58.815 37.500 0.00 0.00 35.14 1.82
170 171 5.647658 TGATCTTGGTGATGCGTAGAAAATT 59.352 36.000 0.00 0.00 35.14 1.82
171 172 5.957842 TCTTGGTGATGCGTAGAAAATTT 57.042 34.783 0.00 0.00 0.00 1.82
172 173 6.325919 TCTTGGTGATGCGTAGAAAATTTT 57.674 33.333 2.28 2.28 0.00 1.82
173 174 6.148948 TCTTGGTGATGCGTAGAAAATTTTG 58.851 36.000 8.47 0.00 0.00 2.44
174 175 5.697473 TGGTGATGCGTAGAAAATTTTGA 57.303 34.783 8.47 0.00 0.00 2.69
175 176 6.078202 TGGTGATGCGTAGAAAATTTTGAA 57.922 33.333 8.47 0.00 0.00 2.69
176 177 6.686630 TGGTGATGCGTAGAAAATTTTGAAT 58.313 32.000 8.47 0.00 0.00 2.57
177 178 7.151308 TGGTGATGCGTAGAAAATTTTGAATT 58.849 30.769 8.47 0.00 0.00 2.17
178 179 7.655328 TGGTGATGCGTAGAAAATTTTGAATTT 59.345 29.630 8.47 0.00 0.00 1.82
179 180 8.162245 GGTGATGCGTAGAAAATTTTGAATTTC 58.838 33.333 8.47 0.00 36.11 2.17
180 181 8.915654 GTGATGCGTAGAAAATTTTGAATTTCT 58.084 29.630 8.47 0.48 45.29 2.52
181 182 9.474920 TGATGCGTAGAAAATTTTGAATTTCTT 57.525 25.926 8.47 0.00 41.79 2.52
182 183 9.943465 GATGCGTAGAAAATTTTGAATTTCTTC 57.057 29.630 8.47 1.45 41.79 2.87
183 184 9.696917 ATGCGTAGAAAATTTTGAATTTCTTCT 57.303 25.926 8.47 0.00 41.79 2.85
191 192 8.812147 AAATTTTGAATTTCTTCTACGTTCCC 57.188 30.769 0.00 0.00 32.29 3.97
192 193 5.952526 TTTGAATTTCTTCTACGTTCCCC 57.047 39.130 0.00 0.00 32.29 4.81
193 194 4.627284 TGAATTTCTTCTACGTTCCCCA 57.373 40.909 0.00 0.00 32.29 4.96
194 195 4.975631 TGAATTTCTTCTACGTTCCCCAA 58.024 39.130 0.00 0.00 32.29 4.12
195 196 4.758165 TGAATTTCTTCTACGTTCCCCAAC 59.242 41.667 0.00 0.00 32.29 3.77
196 197 3.842007 TTTCTTCTACGTTCCCCAACA 57.158 42.857 0.00 0.00 32.14 3.33
197 198 3.842007 TTCTTCTACGTTCCCCAACAA 57.158 42.857 0.00 0.00 32.14 2.83
198 199 3.116079 TCTTCTACGTTCCCCAACAAC 57.884 47.619 0.00 0.00 32.14 3.32
203 204 4.129757 GTTCCCCAACAACGACGT 57.870 55.556 0.00 0.00 32.14 4.34
204 205 1.936658 GTTCCCCAACAACGACGTC 59.063 57.895 5.18 5.18 32.14 4.34
205 206 1.227615 TTCCCCAACAACGACGTCC 60.228 57.895 10.58 0.00 0.00 4.79
206 207 1.688269 TTCCCCAACAACGACGTCCT 61.688 55.000 10.58 0.00 0.00 3.85
207 208 1.227734 CCCCAACAACGACGTCCTT 60.228 57.895 10.58 1.38 0.00 3.36
208 209 1.226030 CCCCAACAACGACGTCCTTC 61.226 60.000 10.58 0.00 0.00 3.46
209 210 1.554042 CCCAACAACGACGTCCTTCG 61.554 60.000 10.58 0.68 44.87 3.79
210 211 0.595567 CCAACAACGACGTCCTTCGA 60.596 55.000 10.58 0.00 41.78 3.71
211 212 0.776451 CAACAACGACGTCCTTCGAG 59.224 55.000 10.58 0.00 41.78 4.04
212 213 0.318445 AACAACGACGTCCTTCGAGG 60.318 55.000 10.58 0.00 41.78 4.63
213 214 1.168407 ACAACGACGTCCTTCGAGGA 61.168 55.000 10.58 0.00 43.43 3.71
214 215 0.454620 CAACGACGTCCTTCGAGGAG 60.455 60.000 10.58 0.00 46.90 3.69
215 216 0.888285 AACGACGTCCTTCGAGGAGT 60.888 55.000 10.58 0.00 46.90 3.85
216 217 1.297456 ACGACGTCCTTCGAGGAGTC 61.297 60.000 10.58 9.02 46.90 3.36
217 218 1.801983 GACGTCCTTCGAGGAGTCC 59.198 63.158 3.51 0.00 46.90 3.85
218 219 1.655885 GACGTCCTTCGAGGAGTCCC 61.656 65.000 5.25 0.00 46.90 4.46
219 220 2.762234 CGTCCTTCGAGGAGTCCCG 61.762 68.421 5.25 9.61 46.90 5.14
220 221 2.044252 TCCTTCGAGGAGTCCCGG 60.044 66.667 16.79 0.00 40.06 5.73
221 222 2.362632 CCTTCGAGGAGTCCCGGT 60.363 66.667 16.79 0.00 37.67 5.28
222 223 2.416432 CCTTCGAGGAGTCCCGGTC 61.416 68.421 16.79 3.92 37.67 4.79
223 224 2.362120 TTCGAGGAGTCCCGGTCC 60.362 66.667 16.79 0.00 37.58 4.46
224 225 3.214190 TTCGAGGAGTCCCGGTCCA 62.214 63.158 16.79 0.00 36.43 4.02
225 226 3.141488 CGAGGAGTCCCGGTCCAG 61.141 72.222 11.86 2.16 36.43 3.86
226 227 2.037527 GAGGAGTCCCGGTCCAGT 59.962 66.667 11.86 0.00 36.43 4.00
227 228 2.037527 AGGAGTCCCGGTCCAGTC 59.962 66.667 11.86 2.42 36.43 3.51
228 229 2.037527 GGAGTCCCGGTCCAGTCT 59.962 66.667 0.00 0.00 33.84 3.24
229 230 1.609794 GGAGTCCCGGTCCAGTCTT 60.610 63.158 0.00 0.00 33.84 3.01
230 231 1.192803 GGAGTCCCGGTCCAGTCTTT 61.193 60.000 0.00 0.00 33.84 2.52
231 232 0.037232 GAGTCCCGGTCCAGTCTTTG 60.037 60.000 0.00 0.00 0.00 2.77
232 233 1.671379 GTCCCGGTCCAGTCTTTGC 60.671 63.158 0.00 0.00 0.00 3.68
233 234 2.742372 CCCGGTCCAGTCTTTGCG 60.742 66.667 0.00 0.00 0.00 4.85
234 235 2.030562 CCGGTCCAGTCTTTGCGT 59.969 61.111 0.00 0.00 0.00 5.24
235 236 2.027625 CCGGTCCAGTCTTTGCGTC 61.028 63.158 0.00 0.00 0.00 5.19
236 237 1.300620 CGGTCCAGTCTTTGCGTCA 60.301 57.895 0.00 0.00 0.00 4.35
237 238 1.284982 CGGTCCAGTCTTTGCGTCAG 61.285 60.000 0.00 0.00 0.00 3.51
238 239 1.569479 GGTCCAGTCTTTGCGTCAGC 61.569 60.000 0.00 0.00 45.41 4.26
266 267 4.003788 CTTCGACTGCGGGGGTGT 62.004 66.667 0.00 0.00 38.28 4.16
267 268 3.530910 CTTCGACTGCGGGGGTGTT 62.531 63.158 0.00 0.00 38.28 3.32
268 269 3.818121 TTCGACTGCGGGGGTGTTG 62.818 63.158 0.00 0.00 38.28 3.33
269 270 4.308458 CGACTGCGGGGGTGTTGA 62.308 66.667 0.00 0.00 0.00 3.18
270 271 2.358737 GACTGCGGGGGTGTTGAG 60.359 66.667 0.00 0.00 0.00 3.02
271 272 3.168528 ACTGCGGGGGTGTTGAGT 61.169 61.111 0.00 0.00 0.00 3.41
272 273 1.823169 GACTGCGGGGGTGTTGAGTA 61.823 60.000 0.00 0.00 0.00 2.59
273 274 1.198759 ACTGCGGGGGTGTTGAGTAT 61.199 55.000 0.00 0.00 0.00 2.12
274 275 0.828022 CTGCGGGGGTGTTGAGTATA 59.172 55.000 0.00 0.00 0.00 1.47
275 276 1.416401 CTGCGGGGGTGTTGAGTATAT 59.584 52.381 0.00 0.00 0.00 0.86
276 277 1.140052 TGCGGGGGTGTTGAGTATATG 59.860 52.381 0.00 0.00 0.00 1.78
277 278 1.140252 GCGGGGGTGTTGAGTATATGT 59.860 52.381 0.00 0.00 0.00 2.29
278 279 2.833794 CGGGGGTGTTGAGTATATGTG 58.166 52.381 0.00 0.00 0.00 3.21
279 280 2.169769 CGGGGGTGTTGAGTATATGTGT 59.830 50.000 0.00 0.00 0.00 3.72
280 281 3.370103 CGGGGGTGTTGAGTATATGTGTT 60.370 47.826 0.00 0.00 0.00 3.32
281 282 4.141892 CGGGGGTGTTGAGTATATGTGTTA 60.142 45.833 0.00 0.00 0.00 2.41
282 283 5.454187 CGGGGGTGTTGAGTATATGTGTTAT 60.454 44.000 0.00 0.00 0.00 1.89
283 284 5.763204 GGGGGTGTTGAGTATATGTGTTATG 59.237 44.000 0.00 0.00 0.00 1.90
284 285 6.354130 GGGGTGTTGAGTATATGTGTTATGT 58.646 40.000 0.00 0.00 0.00 2.29
285 286 6.260050 GGGGTGTTGAGTATATGTGTTATGTG 59.740 42.308 0.00 0.00 0.00 3.21
286 287 6.238374 GGGTGTTGAGTATATGTGTTATGTGC 60.238 42.308 0.00 0.00 0.00 4.57
287 288 6.315144 GGTGTTGAGTATATGTGTTATGTGCA 59.685 38.462 0.00 0.00 0.00 4.57
288 289 7.012327 GGTGTTGAGTATATGTGTTATGTGCAT 59.988 37.037 0.00 0.00 0.00 3.96
289 290 9.040939 GTGTTGAGTATATGTGTTATGTGCATA 57.959 33.333 0.00 0.00 0.00 3.14
290 291 9.777297 TGTTGAGTATATGTGTTATGTGCATAT 57.223 29.630 0.31 0.31 38.73 1.78
293 294 9.139174 TGAGTATATGTGTTATGTGCATATTCG 57.861 33.333 0.00 0.00 37.15 3.34
294 295 9.140286 GAGTATATGTGTTATGTGCATATTCGT 57.860 33.333 0.00 0.00 37.15 3.85
295 296 8.925700 AGTATATGTGTTATGTGCATATTCGTG 58.074 33.333 0.00 0.00 37.15 4.35
296 297 7.728847 ATATGTGTTATGTGCATATTCGTGT 57.271 32.000 0.00 0.00 33.51 4.49
297 298 8.825667 ATATGTGTTATGTGCATATTCGTGTA 57.174 30.769 0.00 0.00 33.51 2.90
298 299 7.728847 ATGTGTTATGTGCATATTCGTGTAT 57.271 32.000 0.00 0.00 0.00 2.29
299 300 7.172654 TGTGTTATGTGCATATTCGTGTATC 57.827 36.000 0.00 0.00 0.00 2.24
300 301 6.074569 TGTGTTATGTGCATATTCGTGTATCG 60.075 38.462 0.00 0.00 41.41 2.92
301 302 5.404066 TGTTATGTGCATATTCGTGTATCGG 59.596 40.000 0.00 0.00 40.32 4.18
302 303 2.749776 TGTGCATATTCGTGTATCGGG 58.250 47.619 0.00 0.00 40.32 5.14
303 304 1.459592 GTGCATATTCGTGTATCGGGC 59.540 52.381 0.00 0.00 40.32 6.13
304 305 1.076332 GCATATTCGTGTATCGGGCC 58.924 55.000 0.00 0.00 40.32 5.80
305 306 1.722011 CATATTCGTGTATCGGGCCC 58.278 55.000 13.57 13.57 40.32 5.80
306 307 1.001520 CATATTCGTGTATCGGGCCCA 59.998 52.381 24.92 9.77 40.32 5.36
307 308 0.390124 TATTCGTGTATCGGGCCCAC 59.610 55.000 24.92 13.73 40.32 4.61
308 309 2.319890 ATTCGTGTATCGGGCCCACC 62.320 60.000 24.92 6.29 40.32 4.61
309 310 3.467226 CGTGTATCGGGCCCACCT 61.467 66.667 24.92 7.88 36.97 4.00
310 311 2.504519 GTGTATCGGGCCCACCTC 59.495 66.667 24.92 9.85 36.97 3.85
311 312 2.064581 GTGTATCGGGCCCACCTCT 61.065 63.158 24.92 2.96 36.97 3.69
312 313 1.306654 TGTATCGGGCCCACCTCTT 60.307 57.895 24.92 1.17 36.97 2.85
313 314 0.031917 TGTATCGGGCCCACCTCTTA 60.032 55.000 24.92 0.11 36.97 2.10
314 315 0.680061 GTATCGGGCCCACCTCTTAG 59.320 60.000 24.92 1.98 36.97 2.18
315 316 0.471211 TATCGGGCCCACCTCTTAGG 60.471 60.000 24.92 1.11 42.49 2.69
331 332 7.045126 CCTCTTAGGTCCTTGTATAGTTGAG 57.955 44.000 0.00 0.00 0.00 3.02
332 333 6.041069 CCTCTTAGGTCCTTGTATAGTTGAGG 59.959 46.154 0.00 0.00 0.00 3.86
333 334 6.500336 TCTTAGGTCCTTGTATAGTTGAGGT 58.500 40.000 0.00 0.00 0.00 3.85
334 335 6.606395 TCTTAGGTCCTTGTATAGTTGAGGTC 59.394 42.308 0.00 0.00 0.00 3.85
335 336 3.700038 AGGTCCTTGTATAGTTGAGGTCG 59.300 47.826 0.00 0.00 0.00 4.79
336 337 3.446516 GGTCCTTGTATAGTTGAGGTCGT 59.553 47.826 0.00 0.00 0.00 4.34
337 338 4.421948 GTCCTTGTATAGTTGAGGTCGTG 58.578 47.826 0.00 0.00 0.00 4.35
338 339 3.446161 TCCTTGTATAGTTGAGGTCGTGG 59.554 47.826 0.00 0.00 0.00 4.94
339 340 2.953466 TGTATAGTTGAGGTCGTGGC 57.047 50.000 0.00 0.00 0.00 5.01
340 341 1.479323 TGTATAGTTGAGGTCGTGGCC 59.521 52.381 0.00 0.00 0.00 5.36
341 342 1.117150 TATAGTTGAGGTCGTGGCCC 58.883 55.000 0.00 0.00 0.00 5.80
342 343 0.907704 ATAGTTGAGGTCGTGGCCCA 60.908 55.000 0.00 0.00 0.00 5.36
343 344 1.823169 TAGTTGAGGTCGTGGCCCAC 61.823 60.000 2.98 2.98 0.00 4.61
344 345 3.948719 TTGAGGTCGTGGCCCACC 61.949 66.667 8.62 3.51 0.00 4.61
349 350 4.922026 GTCGTGGCCCACCGTTGT 62.922 66.667 8.62 0.00 39.70 3.32
350 351 3.232483 TCGTGGCCCACCGTTGTA 61.232 61.111 8.62 0.00 39.70 2.41
351 352 3.045492 CGTGGCCCACCGTTGTAC 61.045 66.667 8.62 0.00 39.70 2.90
352 353 2.111460 GTGGCCCACCGTTGTACA 59.889 61.111 1.17 0.00 39.70 2.90
353 354 1.302993 GTGGCCCACCGTTGTACAT 60.303 57.895 1.17 0.00 39.70 2.29
354 355 0.891904 GTGGCCCACCGTTGTACATT 60.892 55.000 1.17 0.00 39.70 2.71
355 356 0.691332 TGGCCCACCGTTGTACATTA 59.309 50.000 0.00 0.00 39.70 1.90
356 357 1.282447 TGGCCCACCGTTGTACATTAT 59.718 47.619 0.00 0.00 39.70 1.28
357 358 2.504585 TGGCCCACCGTTGTACATTATA 59.495 45.455 0.00 0.00 39.70 0.98
358 359 3.136809 TGGCCCACCGTTGTACATTATAT 59.863 43.478 0.00 0.00 39.70 0.86
359 360 4.347292 TGGCCCACCGTTGTACATTATATA 59.653 41.667 0.00 0.00 39.70 0.86
360 361 5.013287 TGGCCCACCGTTGTACATTATATAT 59.987 40.000 0.00 0.00 39.70 0.86
361 362 6.212993 TGGCCCACCGTTGTACATTATATATA 59.787 38.462 0.00 0.00 39.70 0.86
362 363 6.536224 GGCCCACCGTTGTACATTATATATAC 59.464 42.308 0.00 0.00 0.00 1.47
363 364 6.254157 GCCCACCGTTGTACATTATATATACG 59.746 42.308 0.00 0.50 0.00 3.06
364 365 7.315142 CCCACCGTTGTACATTATATATACGT 58.685 38.462 10.51 0.00 0.00 3.57
365 366 7.274033 CCCACCGTTGTACATTATATATACGTG 59.726 40.741 0.00 8.79 0.00 4.49
366 367 7.809331 CCACCGTTGTACATTATATATACGTGT 59.191 37.037 0.00 12.27 0.00 4.49
367 368 8.632551 CACCGTTGTACATTATATATACGTGTG 58.367 37.037 15.40 12.52 0.00 3.82
368 369 8.567104 ACCGTTGTACATTATATATACGTGTGA 58.433 33.333 15.40 4.65 0.00 3.58
369 370 9.563898 CCGTTGTACATTATATATACGTGTGAT 57.436 33.333 15.40 0.00 0.00 3.06
373 374 9.915629 TGTACATTATATATACGTGTGATTGCA 57.084 29.630 15.40 0.00 0.00 4.08
375 376 8.251750 ACATTATATATACGTGTGATTGCACC 57.748 34.615 0.00 0.00 44.51 5.01
376 377 8.094548 ACATTATATATACGTGTGATTGCACCT 58.905 33.333 0.00 0.00 44.51 4.00
377 378 7.883229 TTATATATACGTGTGATTGCACCTG 57.117 36.000 0.00 0.00 44.51 4.00
378 379 2.760634 ATACGTGTGATTGCACCTGA 57.239 45.000 0.00 0.00 44.51 3.86
379 380 2.760634 TACGTGTGATTGCACCTGAT 57.239 45.000 0.00 0.00 44.51 2.90
380 381 1.442769 ACGTGTGATTGCACCTGATC 58.557 50.000 0.00 0.00 44.51 2.92
381 382 1.270785 ACGTGTGATTGCACCTGATCA 60.271 47.619 0.00 0.00 44.51 2.92
382 383 1.805943 CGTGTGATTGCACCTGATCAA 59.194 47.619 0.41 0.00 44.51 2.57
383 384 2.413239 CGTGTGATTGCACCTGATCAAC 60.413 50.000 0.41 2.25 44.51 3.18
384 385 2.553602 GTGTGATTGCACCTGATCAACA 59.446 45.455 0.41 0.00 44.51 3.33
385 386 2.553602 TGTGATTGCACCTGATCAACAC 59.446 45.455 0.41 0.00 44.51 3.32
386 387 2.553602 GTGATTGCACCTGATCAACACA 59.446 45.455 0.41 0.00 39.14 3.72
387 388 3.192001 GTGATTGCACCTGATCAACACAT 59.808 43.478 0.41 0.00 39.14 3.21
388 389 3.441222 TGATTGCACCTGATCAACACATC 59.559 43.478 0.00 0.00 29.82 3.06
389 390 1.441738 TGCACCTGATCAACACATCG 58.558 50.000 0.00 0.00 0.00 3.84
390 391 1.270785 TGCACCTGATCAACACATCGT 60.271 47.619 0.00 0.00 0.00 3.73
391 392 1.129251 GCACCTGATCAACACATCGTG 59.871 52.381 0.00 0.00 39.75 4.35
392 393 1.129251 CACCTGATCAACACATCGTGC 59.871 52.381 0.00 0.00 36.98 5.34
393 394 1.270785 ACCTGATCAACACATCGTGCA 60.271 47.619 0.00 0.00 36.98 4.57
394 395 1.805943 CCTGATCAACACATCGTGCAA 59.194 47.619 0.00 0.00 36.98 4.08
395 396 2.421073 CCTGATCAACACATCGTGCAAT 59.579 45.455 0.00 0.00 36.98 3.56
396 397 3.119743 CCTGATCAACACATCGTGCAATT 60.120 43.478 0.00 0.00 36.98 2.32
397 398 4.478699 CTGATCAACACATCGTGCAATTT 58.521 39.130 0.00 0.00 36.98 1.82
398 399 4.475028 TGATCAACACATCGTGCAATTTC 58.525 39.130 0.00 0.00 36.98 2.17
399 400 3.978718 TCAACACATCGTGCAATTTCA 57.021 38.095 0.00 0.00 36.98 2.69
400 401 4.502171 TCAACACATCGTGCAATTTCAT 57.498 36.364 0.00 0.00 36.98 2.57
401 402 4.475028 TCAACACATCGTGCAATTTCATC 58.525 39.130 0.00 0.00 36.98 2.92
402 403 4.023365 TCAACACATCGTGCAATTTCATCA 60.023 37.500 0.00 0.00 36.98 3.07
403 404 4.707030 ACACATCGTGCAATTTCATCAT 57.293 36.364 0.00 0.00 36.98 2.45
404 405 4.665212 ACACATCGTGCAATTTCATCATC 58.335 39.130 0.00 0.00 36.98 2.92
405 406 4.156373 ACACATCGTGCAATTTCATCATCA 59.844 37.500 0.00 0.00 36.98 3.07
406 407 5.163591 ACACATCGTGCAATTTCATCATCAT 60.164 36.000 0.00 0.00 36.98 2.45
407 408 6.038492 ACACATCGTGCAATTTCATCATCATA 59.962 34.615 0.00 0.00 36.98 2.15
408 409 6.358822 CACATCGTGCAATTTCATCATCATAC 59.641 38.462 0.00 0.00 0.00 2.39
465 466 5.710984 ACTTGTTTAGTGGAGTACTCATCG 58.289 41.667 23.91 4.95 40.89 3.84
476 477 6.147164 GTGGAGTACTCATCGACATTGAAAAA 59.853 38.462 23.91 0.00 0.00 1.94
489 490 5.848406 ACATTGAAAAATTAACCAAGCCGA 58.152 33.333 0.00 0.00 0.00 5.54
491 492 5.776173 TTGAAAAATTAACCAAGCCGAGA 57.224 34.783 0.00 0.00 0.00 4.04
492 493 5.776173 TGAAAAATTAACCAAGCCGAGAA 57.224 34.783 0.00 0.00 0.00 2.87
493 494 6.150396 TGAAAAATTAACCAAGCCGAGAAA 57.850 33.333 0.00 0.00 0.00 2.52
559 561 7.009540 GCAGTAAAGTGTCCAAAATAATCATGC 59.990 37.037 0.00 0.00 0.00 4.06
595 597 6.304356 ACACAACACAACATGATTACAGAG 57.696 37.500 0.00 0.00 0.00 3.35
636 638 4.706476 TGAAAGGACATTGGGAGCAAATAG 59.294 41.667 0.00 0.00 0.00 1.73
640 642 6.018433 AGGACATTGGGAGCAAATAGTAAT 57.982 37.500 0.00 0.00 0.00 1.89
850 943 2.757917 GCAGCGACTCCTCCTCCT 60.758 66.667 0.00 0.00 0.00 3.69
917 1016 7.308951 GCAAAAACTAACAAGGTAGAGCCAATA 60.309 37.037 0.00 0.00 40.61 1.90
1035 1147 6.218108 ACTAAAATAGTGCCGCTACTTACT 57.782 37.500 0.00 0.00 37.69 2.24
1036 1148 6.637657 ACTAAAATAGTGCCGCTACTTACTT 58.362 36.000 0.00 0.00 37.69 2.24
1037 1149 7.101700 ACTAAAATAGTGCCGCTACTTACTTT 58.898 34.615 0.00 0.00 37.69 2.66
1066 1178 2.804828 AAAGCGAGGCAGGGCAGTAC 62.805 60.000 0.00 0.00 0.00 2.73
1067 1179 3.775654 GCGAGGCAGGGCAGTACT 61.776 66.667 0.00 0.00 0.00 2.73
1070 1182 1.038130 CGAGGCAGGGCAGTACTAGT 61.038 60.000 0.00 0.00 0.00 2.57
1073 1185 1.288335 AGGCAGGGCAGTACTAGTAGT 59.712 52.381 8.14 8.14 0.00 2.73
1075 1187 2.100989 GCAGGGCAGTACTAGTAGTGT 58.899 52.381 29.68 14.25 38.44 3.55
1078 1190 4.778579 CAGGGCAGTACTAGTAGTGTAGA 58.221 47.826 29.68 0.00 38.44 2.59
1080 1192 5.651139 CAGGGCAGTACTAGTAGTGTAGAAA 59.349 44.000 29.68 0.00 38.44 2.52
1086 1198 7.591165 CAGTACTAGTAGTGTAGAAACTGCAA 58.409 38.462 24.12 0.00 35.45 4.08
1087 1199 8.080417 CAGTACTAGTAGTGTAGAAACTGCAAA 58.920 37.037 24.12 0.00 35.45 3.68
1089 1201 9.252962 GTACTAGTAGTGTAGAAACTGCAAAAA 57.747 33.333 13.29 0.00 35.45 1.94
1171 1311 2.204463 TGCAACCCCCTCTTCATGATA 58.796 47.619 0.00 0.00 0.00 2.15
1257 1406 1.005630 GTGAAGCCAGTGAGCGAGT 60.006 57.895 0.00 0.00 38.01 4.18
1261 1410 1.467678 AAGCCAGTGAGCGAGTGAGT 61.468 55.000 0.00 0.00 38.01 3.41
1275 1424 3.129462 CGAGTGAGTGAGCTCCTTTCATA 59.871 47.826 12.15 0.00 40.95 2.15
1277 1426 5.669477 GAGTGAGTGAGCTCCTTTCATATT 58.331 41.667 12.15 3.08 40.95 1.28
1278 1427 6.059787 AGTGAGTGAGCTCCTTTCATATTT 57.940 37.500 12.15 0.00 40.95 1.40
1279 1428 6.479884 AGTGAGTGAGCTCCTTTCATATTTT 58.520 36.000 12.15 0.00 40.95 1.82
1280 1429 6.597280 AGTGAGTGAGCTCCTTTCATATTTTC 59.403 38.462 12.15 0.13 40.95 2.29
1281 1430 6.597280 GTGAGTGAGCTCCTTTCATATTTTCT 59.403 38.462 12.15 0.00 40.95 2.52
1282 1431 6.820656 TGAGTGAGCTCCTTTCATATTTTCTC 59.179 38.462 12.15 0.00 40.95 2.87
1283 1432 6.956497 AGTGAGCTCCTTTCATATTTTCTCT 58.044 36.000 12.15 0.00 0.00 3.10
1284 1433 7.047271 AGTGAGCTCCTTTCATATTTTCTCTC 58.953 38.462 12.15 0.00 0.00 3.20
1285 1434 6.259829 GTGAGCTCCTTTCATATTTTCTCTCC 59.740 42.308 12.15 0.00 0.00 3.71
1286 1435 6.070021 TGAGCTCCTTTCATATTTTCTCTCCA 60.070 38.462 12.15 0.00 0.00 3.86
1287 1436 6.725364 AGCTCCTTTCATATTTTCTCTCCAA 58.275 36.000 0.00 0.00 0.00 3.53
1288 1437 7.352738 AGCTCCTTTCATATTTTCTCTCCAAT 58.647 34.615 0.00 0.00 0.00 3.16
1400 1549 6.299141 AGTCAAATCTTTGCTGAGGTTTCTA 58.701 36.000 0.00 0.00 38.05 2.10
1405 1558 7.622893 AATCTTTGCTGAGGTTTCTATCTTC 57.377 36.000 0.00 0.00 0.00 2.87
1416 1573 7.846823 TGAGGTTTCTATCTTCCTTTCTATCCT 59.153 37.037 0.00 0.00 0.00 3.24
1659 1847 3.669939 TTCTGATCCCCCATTTTCTCC 57.330 47.619 0.00 0.00 0.00 3.71
2398 2625 1.001503 CAGCTGGGACTCCTCCTCT 59.998 63.158 5.57 0.00 36.68 3.69
2399 2626 0.617249 CAGCTGGGACTCCTCCTCTT 60.617 60.000 5.57 0.00 36.68 2.85
2400 2627 0.325203 AGCTGGGACTCCTCCTCTTC 60.325 60.000 0.00 0.00 36.68 2.87
2401 2628 1.671901 GCTGGGACTCCTCCTCTTCG 61.672 65.000 0.00 0.00 36.68 3.79
2734 2964 0.525311 CTCTCAAGCTCTGCTCGACA 59.475 55.000 0.00 0.00 38.25 4.35
2848 3078 0.248289 GCGCCAAGTACTCCTACCAA 59.752 55.000 0.00 0.00 0.00 3.67
3856 4089 1.415672 TTGCTGGGGGTCGTCTCTTT 61.416 55.000 0.00 0.00 0.00 2.52
4081 4314 3.766151 CAGGCACATTGATCATGTTGAC 58.234 45.455 0.00 0.00 44.40 3.18
4285 4518 2.233431 TGGTGGTGCTTTCATTAATGCC 59.767 45.455 10.76 5.67 35.45 4.40
4376 4609 2.364972 AGACCCAAACCAGAAACAGG 57.635 50.000 0.00 0.00 0.00 4.00
4393 4626 2.012673 CAGGCAAATGGAGCACTAGAC 58.987 52.381 0.00 0.00 0.00 2.59
4876 5109 2.434428 AGCAGCTCACTGGAAATGAAG 58.566 47.619 0.00 0.00 44.63 3.02
4895 5128 6.509418 TGAAGTAGTTTTGAGTGCTTTGTT 57.491 33.333 0.00 0.00 0.00 2.83
5037 5270 3.498774 ATATTGCTGGATGACTGTCCC 57.501 47.619 5.17 0.63 37.48 4.46
5044 5277 3.077359 CTGGATGACTGTCCCTTTTGTC 58.923 50.000 5.17 0.00 37.48 3.18
5151 5385 9.687717 CAACATGTTTTTGTCTTGTTGAAATAC 57.312 29.630 8.77 0.00 45.32 1.89
5187 5421 8.974408 GTTGGATTTGAAATGTTTGTAAGTACC 58.026 33.333 0.00 0.00 0.00 3.34
5226 5460 4.866486 GGGTGAACTTCAATCATGAATTGC 59.134 41.667 0.00 0.00 44.29 3.56
5278 5512 4.261656 CCCCTTTTGTGCATGTTACGTTTA 60.262 41.667 0.00 0.00 0.00 2.01
5288 5522 4.617298 GCATGTTACGTTTATTTGGCAGGT 60.617 41.667 0.00 0.00 0.00 4.00
5573 5807 1.913419 CCAGCCCAGGTAAGAAGGTAA 59.087 52.381 0.00 0.00 0.00 2.85
5635 5869 6.514012 TTTGGATGCTCCCTATTTATCAGA 57.486 37.500 0.50 0.00 35.03 3.27
5724 5959 6.371809 TTCAGTTGTGCTGGTAAACTAAAG 57.628 37.500 0.00 0.00 45.08 1.85
5769 6004 8.935844 CAGAAGCTTATCTTGTGTTATGTGTTA 58.064 33.333 0.00 0.00 40.18 2.41
5952 6188 6.749923 AGCAGAATTGTGATAAACCTCTTC 57.250 37.500 6.80 0.00 0.00 2.87
5959 6195 4.101114 TGTGATAAACCTCTTCCTAGGCA 58.899 43.478 2.96 0.00 40.62 4.75
5960 6196 4.721776 TGTGATAAACCTCTTCCTAGGCAT 59.278 41.667 2.96 0.00 40.62 4.40
5961 6197 5.163301 TGTGATAAACCTCTTCCTAGGCATC 60.163 44.000 2.96 0.00 40.62 3.91
6046 6283 4.115199 CCCTACTGTGGCTGCCCC 62.115 72.222 17.53 4.89 0.00 5.80
6049 6286 1.380302 CTACTGTGGCTGCCCCTTT 59.620 57.895 17.53 0.43 0.00 3.11
6051 6288 2.137177 TACTGTGGCTGCCCCTTTCC 62.137 60.000 17.53 0.00 0.00 3.13
6053 6290 2.118294 GTGGCTGCCCCTTTCCTT 59.882 61.111 17.53 0.00 0.00 3.36
6054 6291 1.979155 GTGGCTGCCCCTTTCCTTC 60.979 63.158 17.53 0.00 0.00 3.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.135056 ATCCTAGCGCCGAACGGAC 62.135 63.158 17.63 7.92 43.93 4.79
1 2 2.831742 ATCCTAGCGCCGAACGGA 60.832 61.111 17.63 3.21 43.93 4.69
2 3 2.354773 GATCCTAGCGCCGAACGG 60.355 66.667 2.29 9.00 43.93 4.44
4 5 1.004277 CGATGATCCTAGCGCCGAAC 61.004 60.000 2.29 0.00 0.00 3.95
5 6 1.285950 CGATGATCCTAGCGCCGAA 59.714 57.895 2.29 0.00 0.00 4.30
6 7 2.626780 CCGATGATCCTAGCGCCGA 61.627 63.158 2.29 0.00 0.00 5.54
7 8 2.126307 CCGATGATCCTAGCGCCG 60.126 66.667 2.29 0.00 0.00 6.46
8 9 1.373497 CACCGATGATCCTAGCGCC 60.373 63.158 2.29 0.00 0.00 6.53
9 10 0.244994 ATCACCGATGATCCTAGCGC 59.755 55.000 0.00 0.00 42.15 5.92
10 11 2.732412 AATCACCGATGATCCTAGCG 57.268 50.000 0.00 0.00 45.26 4.26
11 12 3.070018 CCAAATCACCGATGATCCTAGC 58.930 50.000 0.00 0.00 45.26 3.42
12 13 4.607293 TCCAAATCACCGATGATCCTAG 57.393 45.455 0.00 0.00 45.26 3.02
13 14 4.592778 TGATCCAAATCACCGATGATCCTA 59.407 41.667 0.00 0.00 45.26 2.94
14 15 3.392285 TGATCCAAATCACCGATGATCCT 59.608 43.478 0.00 0.00 45.26 3.24
15 16 3.743521 TGATCCAAATCACCGATGATCC 58.256 45.455 0.00 0.00 45.26 3.36
24 25 7.861595 TCGTACTCGTCGTGATCCAAATCAC 62.862 48.000 8.20 8.20 45.52 3.06
25 26 3.729762 CGTACTCGTCGTGATCCAAATCA 60.730 47.826 0.56 0.00 39.63 2.57
26 27 2.782192 CGTACTCGTCGTGATCCAAATC 59.218 50.000 0.56 0.00 0.00 2.17
27 28 2.421073 TCGTACTCGTCGTGATCCAAAT 59.579 45.455 0.56 0.00 38.33 2.32
28 29 1.805943 TCGTACTCGTCGTGATCCAAA 59.194 47.619 0.56 0.00 38.33 3.28
29 30 1.129251 GTCGTACTCGTCGTGATCCAA 59.871 52.381 0.56 0.00 38.33 3.53
30 31 0.723414 GTCGTACTCGTCGTGATCCA 59.277 55.000 0.56 0.00 38.33 3.41
31 32 1.005137 GAGTCGTACTCGTCGTGATCC 60.005 57.143 0.56 0.00 35.28 3.36
32 33 1.005137 GGAGTCGTACTCGTCGTGATC 60.005 57.143 0.56 0.00 45.96 2.92
33 34 1.005340 GGAGTCGTACTCGTCGTGAT 58.995 55.000 0.56 0.00 45.96 3.06
34 35 0.319813 TGGAGTCGTACTCGTCGTGA 60.320 55.000 0.56 0.00 45.96 4.35
35 36 0.725686 ATGGAGTCGTACTCGTCGTG 59.274 55.000 8.33 0.00 45.96 4.35
36 37 1.005340 GATGGAGTCGTACTCGTCGT 58.995 55.000 8.33 0.00 45.96 4.34
37 38 1.004595 TGATGGAGTCGTACTCGTCG 58.995 55.000 8.33 0.00 45.96 5.12
38 39 2.477525 GGTTGATGGAGTCGTACTCGTC 60.478 54.545 8.33 9.13 45.96 4.20
39 40 1.471684 GGTTGATGGAGTCGTACTCGT 59.528 52.381 8.33 1.85 45.96 4.18
40 41 1.202268 GGGTTGATGGAGTCGTACTCG 60.202 57.143 8.33 0.00 45.96 4.18
41 42 1.136500 GGGGTTGATGGAGTCGTACTC 59.864 57.143 6.50 6.50 44.32 2.59
42 43 1.192428 GGGGTTGATGGAGTCGTACT 58.808 55.000 0.00 0.00 0.00 2.73
43 44 0.179119 CGGGGTTGATGGAGTCGTAC 60.179 60.000 0.00 0.00 0.00 3.67
44 45 0.612732 ACGGGGTTGATGGAGTCGTA 60.613 55.000 0.00 0.00 0.00 3.43
45 46 1.477685 AACGGGGTTGATGGAGTCGT 61.478 55.000 0.00 0.00 0.00 4.34
46 47 0.739813 GAACGGGGTTGATGGAGTCG 60.740 60.000 0.00 0.00 0.00 4.18
47 48 0.613777 AGAACGGGGTTGATGGAGTC 59.386 55.000 0.00 0.00 0.00 3.36
48 49 0.613777 GAGAACGGGGTTGATGGAGT 59.386 55.000 0.00 0.00 0.00 3.85
49 50 0.905357 AGAGAACGGGGTTGATGGAG 59.095 55.000 0.00 0.00 0.00 3.86
50 51 1.003118 CAAGAGAACGGGGTTGATGGA 59.997 52.381 0.00 0.00 0.00 3.41
51 52 1.003118 TCAAGAGAACGGGGTTGATGG 59.997 52.381 0.00 0.00 0.00 3.51
52 53 2.472695 TCAAGAGAACGGGGTTGATG 57.527 50.000 0.00 0.00 0.00 3.07
53 54 2.779506 GTTCAAGAGAACGGGGTTGAT 58.220 47.619 0.00 0.00 44.11 2.57
54 55 2.249844 GTTCAAGAGAACGGGGTTGA 57.750 50.000 0.00 0.00 44.11 3.18
75 76 0.248498 TTGTAGATCGCGAGCGGAAG 60.248 55.000 19.77 0.00 40.25 3.46
76 77 0.248498 CTTGTAGATCGCGAGCGGAA 60.248 55.000 19.77 11.67 40.25 4.30
77 78 1.355563 CTTGTAGATCGCGAGCGGA 59.644 57.895 19.77 8.43 40.25 5.54
78 79 1.658717 CCTTGTAGATCGCGAGCGG 60.659 63.158 19.77 9.89 40.25 5.52
79 80 1.658717 CCCTTGTAGATCGCGAGCG 60.659 63.158 19.77 11.64 41.35 5.03
80 81 0.666913 TACCCTTGTAGATCGCGAGC 59.333 55.000 18.21 18.21 0.00 5.03
81 82 2.293677 ACATACCCTTGTAGATCGCGAG 59.706 50.000 16.66 0.00 0.00 5.03
82 83 2.304092 ACATACCCTTGTAGATCGCGA 58.696 47.619 13.09 13.09 0.00 5.87
83 84 2.795175 ACATACCCTTGTAGATCGCG 57.205 50.000 0.00 0.00 0.00 5.87
89 90 5.509840 GGAGTGCATCTACATACCCTTGTAG 60.510 48.000 5.47 5.47 46.85 2.74
90 91 4.344102 GGAGTGCATCTACATACCCTTGTA 59.656 45.833 0.00 0.00 0.00 2.41
91 92 3.134804 GGAGTGCATCTACATACCCTTGT 59.865 47.826 0.00 0.00 0.00 3.16
92 93 3.495100 GGGAGTGCATCTACATACCCTTG 60.495 52.174 0.00 0.00 35.93 3.61
93 94 2.706190 GGGAGTGCATCTACATACCCTT 59.294 50.000 0.00 0.00 35.93 3.95
94 95 2.330216 GGGAGTGCATCTACATACCCT 58.670 52.381 0.00 0.00 35.93 4.34
95 96 1.348036 GGGGAGTGCATCTACATACCC 59.652 57.143 0.00 0.00 37.17 3.69
96 97 2.330216 AGGGGAGTGCATCTACATACC 58.670 52.381 0.00 0.00 0.00 2.73
97 98 3.244249 GGAAGGGGAGTGCATCTACATAC 60.244 52.174 0.00 0.00 0.00 2.39
98 99 2.972713 GGAAGGGGAGTGCATCTACATA 59.027 50.000 0.00 0.00 0.00 2.29
99 100 1.771255 GGAAGGGGAGTGCATCTACAT 59.229 52.381 0.00 0.00 0.00 2.29
100 101 1.204146 GGAAGGGGAGTGCATCTACA 58.796 55.000 0.00 0.00 0.00 2.74
101 102 0.470341 GGGAAGGGGAGTGCATCTAC 59.530 60.000 0.00 0.00 0.00 2.59
102 103 0.694444 GGGGAAGGGGAGTGCATCTA 60.694 60.000 0.00 0.00 0.00 1.98
103 104 2.003548 GGGGAAGGGGAGTGCATCT 61.004 63.158 0.00 0.00 0.00 2.90
104 105 1.988982 GAGGGGAAGGGGAGTGCATC 61.989 65.000 0.00 0.00 0.00 3.91
105 106 2.003548 GAGGGGAAGGGGAGTGCAT 61.004 63.158 0.00 0.00 0.00 3.96
106 107 2.610859 GAGGGGAAGGGGAGTGCA 60.611 66.667 0.00 0.00 0.00 4.57
107 108 3.787001 CGAGGGGAAGGGGAGTGC 61.787 72.222 0.00 0.00 0.00 4.40
108 109 1.918800 AACGAGGGGAAGGGGAGTG 60.919 63.158 0.00 0.00 0.00 3.51
109 110 1.918800 CAACGAGGGGAAGGGGAGT 60.919 63.158 0.00 0.00 0.00 3.85
110 111 2.990479 CAACGAGGGGAAGGGGAG 59.010 66.667 0.00 0.00 0.00 4.30
111 112 2.465010 TAGCAACGAGGGGAAGGGGA 62.465 60.000 0.00 0.00 0.00 4.81
112 113 1.972660 CTAGCAACGAGGGGAAGGGG 61.973 65.000 0.00 0.00 0.00 4.79
113 114 0.976073 TCTAGCAACGAGGGGAAGGG 60.976 60.000 0.00 0.00 0.00 3.95
114 115 1.123928 ATCTAGCAACGAGGGGAAGG 58.876 55.000 0.00 0.00 0.00 3.46
115 116 2.990066 AATCTAGCAACGAGGGGAAG 57.010 50.000 0.00 0.00 0.00 3.46
116 117 3.371965 AGTAATCTAGCAACGAGGGGAA 58.628 45.455 0.00 0.00 0.00 3.97
117 118 2.957006 GAGTAATCTAGCAACGAGGGGA 59.043 50.000 0.00 0.00 0.00 4.81
118 119 2.036089 GGAGTAATCTAGCAACGAGGGG 59.964 54.545 0.00 0.00 0.00 4.79
119 120 2.693591 TGGAGTAATCTAGCAACGAGGG 59.306 50.000 0.00 0.00 0.00 4.30
120 121 4.592485 ATGGAGTAATCTAGCAACGAGG 57.408 45.455 0.00 0.00 0.00 4.63
121 122 6.561737 TCTATGGAGTAATCTAGCAACGAG 57.438 41.667 0.00 0.00 0.00 4.18
122 123 7.230712 TCAATCTATGGAGTAATCTAGCAACGA 59.769 37.037 0.00 0.00 0.00 3.85
123 124 7.371159 TCAATCTATGGAGTAATCTAGCAACG 58.629 38.462 0.00 0.00 0.00 4.10
124 125 9.364989 GATCAATCTATGGAGTAATCTAGCAAC 57.635 37.037 0.00 0.00 0.00 4.17
125 126 9.319060 AGATCAATCTATGGAGTAATCTAGCAA 57.681 33.333 0.00 0.00 34.85 3.91
126 127 8.891985 AGATCAATCTATGGAGTAATCTAGCA 57.108 34.615 0.00 0.00 34.85 3.49
127 128 9.585099 CAAGATCAATCTATGGAGTAATCTAGC 57.415 37.037 0.00 0.00 35.76 3.42
129 130 9.607333 ACCAAGATCAATCTATGGAGTAATCTA 57.393 33.333 19.34 0.00 37.92 1.98
130 131 8.373981 CACCAAGATCAATCTATGGAGTAATCT 58.626 37.037 19.34 0.00 37.92 2.40
131 132 8.370940 TCACCAAGATCAATCTATGGAGTAATC 58.629 37.037 19.34 0.00 37.92 1.75
132 133 8.267620 TCACCAAGATCAATCTATGGAGTAAT 57.732 34.615 19.34 3.63 37.92 1.89
133 134 7.675161 TCACCAAGATCAATCTATGGAGTAA 57.325 36.000 19.34 6.75 37.92 2.24
134 135 7.674120 CATCACCAAGATCAATCTATGGAGTA 58.326 38.462 19.34 10.06 37.92 2.59
135 136 6.531923 CATCACCAAGATCAATCTATGGAGT 58.468 40.000 19.34 8.56 37.92 3.85
136 137 5.411977 GCATCACCAAGATCAATCTATGGAG 59.588 44.000 19.34 14.57 37.92 3.86
137 138 5.311265 GCATCACCAAGATCAATCTATGGA 58.689 41.667 19.34 6.96 37.92 3.41
138 139 4.153655 CGCATCACCAAGATCAATCTATGG 59.846 45.833 14.46 14.46 39.18 2.74
139 140 4.753610 ACGCATCACCAAGATCAATCTATG 59.246 41.667 0.00 0.00 35.76 2.23
140 141 4.965814 ACGCATCACCAAGATCAATCTAT 58.034 39.130 0.00 0.00 35.76 1.98
141 142 4.406648 ACGCATCACCAAGATCAATCTA 57.593 40.909 0.00 0.00 35.76 1.98
142 143 3.272574 ACGCATCACCAAGATCAATCT 57.727 42.857 0.00 0.00 39.22 2.40
143 144 4.371786 TCTACGCATCACCAAGATCAATC 58.628 43.478 0.00 0.00 33.72 2.67
144 145 4.406648 TCTACGCATCACCAAGATCAAT 57.593 40.909 0.00 0.00 33.72 2.57
145 146 3.885724 TCTACGCATCACCAAGATCAA 57.114 42.857 0.00 0.00 33.72 2.57
146 147 3.885724 TTCTACGCATCACCAAGATCA 57.114 42.857 0.00 0.00 33.72 2.92
147 148 5.741388 ATTTTCTACGCATCACCAAGATC 57.259 39.130 0.00 0.00 33.72 2.75
148 149 6.515272 AAATTTTCTACGCATCACCAAGAT 57.485 33.333 0.00 0.00 37.48 2.40
149 150 5.957842 AAATTTTCTACGCATCACCAAGA 57.042 34.783 0.00 0.00 0.00 3.02
150 151 6.148948 TCAAAATTTTCTACGCATCACCAAG 58.851 36.000 0.00 0.00 0.00 3.61
151 152 6.078202 TCAAAATTTTCTACGCATCACCAA 57.922 33.333 0.00 0.00 0.00 3.67
152 153 5.697473 TCAAAATTTTCTACGCATCACCA 57.303 34.783 0.00 0.00 0.00 4.17
153 154 7.581011 AATTCAAAATTTTCTACGCATCACC 57.419 32.000 0.00 0.00 0.00 4.02
154 155 8.915654 AGAAATTCAAAATTTTCTACGCATCAC 58.084 29.630 0.00 0.00 39.70 3.06
155 156 9.474920 AAGAAATTCAAAATTTTCTACGCATCA 57.525 25.926 0.00 0.00 40.39 3.07
156 157 9.943465 GAAGAAATTCAAAATTTTCTACGCATC 57.057 29.630 0.00 0.00 40.39 3.91
157 158 9.696917 AGAAGAAATTCAAAATTTTCTACGCAT 57.303 25.926 0.00 0.00 40.39 4.73
165 166 9.256477 GGGAACGTAGAAGAAATTCAAAATTTT 57.744 29.630 0.00 0.00 0.00 1.82
166 167 7.870954 GGGGAACGTAGAAGAAATTCAAAATTT 59.129 33.333 0.00 0.00 0.00 1.82
167 168 7.014808 TGGGGAACGTAGAAGAAATTCAAAATT 59.985 33.333 0.00 0.00 0.00 1.82
168 169 6.492087 TGGGGAACGTAGAAGAAATTCAAAAT 59.508 34.615 0.00 0.00 0.00 1.82
169 170 5.828859 TGGGGAACGTAGAAGAAATTCAAAA 59.171 36.000 0.00 0.00 0.00 2.44
170 171 5.378332 TGGGGAACGTAGAAGAAATTCAAA 58.622 37.500 0.00 0.00 0.00 2.69
171 172 4.975631 TGGGGAACGTAGAAGAAATTCAA 58.024 39.130 0.00 0.00 0.00 2.69
172 173 4.627284 TGGGGAACGTAGAAGAAATTCA 57.373 40.909 0.00 0.00 0.00 2.57
173 174 4.758165 TGTTGGGGAACGTAGAAGAAATTC 59.242 41.667 0.00 0.00 0.00 2.17
174 175 4.721132 TGTTGGGGAACGTAGAAGAAATT 58.279 39.130 0.00 0.00 0.00 1.82
175 176 4.360951 TGTTGGGGAACGTAGAAGAAAT 57.639 40.909 0.00 0.00 0.00 2.17
176 177 3.842007 TGTTGGGGAACGTAGAAGAAA 57.158 42.857 0.00 0.00 0.00 2.52
177 178 3.469739 GTTGTTGGGGAACGTAGAAGAA 58.530 45.455 0.00 0.00 0.00 2.52
178 179 2.546373 CGTTGTTGGGGAACGTAGAAGA 60.546 50.000 0.00 0.00 41.00 2.87
179 180 1.796459 CGTTGTTGGGGAACGTAGAAG 59.204 52.381 0.00 0.00 41.00 2.85
180 181 1.411977 TCGTTGTTGGGGAACGTAGAA 59.588 47.619 0.00 0.00 45.09 2.10
181 182 1.039068 TCGTTGTTGGGGAACGTAGA 58.961 50.000 0.00 0.00 45.09 2.59
182 183 1.142474 GTCGTTGTTGGGGAACGTAG 58.858 55.000 0.00 0.00 45.09 3.51
183 184 0.597118 CGTCGTTGTTGGGGAACGTA 60.597 55.000 0.00 0.00 45.09 3.57
184 185 1.884004 CGTCGTTGTTGGGGAACGT 60.884 57.895 0.00 0.00 45.09 3.99
185 186 1.824272 GACGTCGTTGTTGGGGAACG 61.824 60.000 0.00 0.00 45.98 3.95
186 187 1.501337 GGACGTCGTTGTTGGGGAAC 61.501 60.000 9.92 0.00 0.00 3.62
187 188 1.227615 GGACGTCGTTGTTGGGGAA 60.228 57.895 9.92 0.00 0.00 3.97
188 189 1.688269 AAGGACGTCGTTGTTGGGGA 61.688 55.000 21.70 0.00 0.00 4.81
189 190 1.226030 GAAGGACGTCGTTGTTGGGG 61.226 60.000 26.63 0.00 0.00 4.96
190 191 1.554042 CGAAGGACGTCGTTGTTGGG 61.554 60.000 26.63 7.92 36.26 4.12
191 192 0.595567 TCGAAGGACGTCGTTGTTGG 60.596 55.000 26.63 13.23 41.80 3.77
192 193 0.776451 CTCGAAGGACGTCGTTGTTG 59.224 55.000 26.63 15.92 41.80 3.33
193 194 0.318445 CCTCGAAGGACGTCGTTGTT 60.318 55.000 26.63 9.31 41.80 2.83
194 195 1.168407 TCCTCGAAGGACGTCGTTGT 61.168 55.000 26.63 5.12 40.06 3.32
195 196 0.454620 CTCCTCGAAGGACGTCGTTG 60.455 60.000 26.63 17.92 40.06 4.10
196 197 0.888285 ACTCCTCGAAGGACGTCGTT 60.888 55.000 22.42 22.42 40.06 3.85
197 198 1.297456 GACTCCTCGAAGGACGTCGT 61.297 60.000 9.92 7.31 40.06 4.34
198 199 1.424635 GACTCCTCGAAGGACGTCG 59.575 63.158 9.92 0.00 40.06 5.12
199 200 1.655885 GGGACTCCTCGAAGGACGTC 61.656 65.000 7.13 7.13 40.06 4.34
200 201 1.678300 GGGACTCCTCGAAGGACGT 60.678 63.158 0.00 0.00 40.06 4.34
201 202 2.762234 CGGGACTCCTCGAAGGACG 61.762 68.421 0.00 0.00 40.06 4.79
202 203 2.416432 CCGGGACTCCTCGAAGGAC 61.416 68.421 0.00 0.00 40.06 3.85
203 204 2.044252 CCGGGACTCCTCGAAGGA 60.044 66.667 0.00 3.97 43.43 3.36
204 205 2.362632 ACCGGGACTCCTCGAAGG 60.363 66.667 6.32 0.00 36.46 3.46
205 206 2.416432 GGACCGGGACTCCTCGAAG 61.416 68.421 6.32 0.00 0.00 3.79
206 207 2.362120 GGACCGGGACTCCTCGAA 60.362 66.667 6.32 0.00 0.00 3.71
207 208 3.640257 CTGGACCGGGACTCCTCGA 62.640 68.421 6.32 0.00 0.00 4.04
208 209 3.141488 CTGGACCGGGACTCCTCG 61.141 72.222 6.32 0.00 0.00 4.63
209 210 2.037527 ACTGGACCGGGACTCCTC 59.962 66.667 6.32 0.00 0.00 3.71
210 211 2.037527 GACTGGACCGGGACTCCT 59.962 66.667 6.32 0.00 0.00 3.69
211 212 1.192803 AAAGACTGGACCGGGACTCC 61.193 60.000 6.32 4.15 0.00 3.85
212 213 0.037232 CAAAGACTGGACCGGGACTC 60.037 60.000 6.32 0.00 0.00 3.36
213 214 2.058675 CAAAGACTGGACCGGGACT 58.941 57.895 6.32 0.79 0.00 3.85
214 215 1.671379 GCAAAGACTGGACCGGGAC 60.671 63.158 6.32 0.00 0.00 4.46
215 216 2.747686 GCAAAGACTGGACCGGGA 59.252 61.111 6.32 0.00 0.00 5.14
216 217 2.742372 CGCAAAGACTGGACCGGG 60.742 66.667 6.32 0.00 0.00 5.73
217 218 2.027625 GACGCAAAGACTGGACCGG 61.028 63.158 0.00 0.00 0.00 5.28
218 219 1.284982 CTGACGCAAAGACTGGACCG 61.285 60.000 0.00 0.00 0.00 4.79
219 220 1.569479 GCTGACGCAAAGACTGGACC 61.569 60.000 0.00 0.00 35.78 4.46
220 221 1.862806 GCTGACGCAAAGACTGGAC 59.137 57.895 0.00 0.00 35.78 4.02
221 222 1.664649 CGCTGACGCAAAGACTGGA 60.665 57.895 0.00 0.00 35.30 3.86
222 223 1.016130 ATCGCTGACGCAAAGACTGG 61.016 55.000 0.00 0.00 39.84 4.00
223 224 0.094216 CATCGCTGACGCAAAGACTG 59.906 55.000 0.00 0.00 39.84 3.51
224 225 1.016130 CCATCGCTGACGCAAAGACT 61.016 55.000 0.00 0.00 39.84 3.24
225 226 1.421485 CCATCGCTGACGCAAAGAC 59.579 57.895 0.00 0.00 39.84 3.01
226 227 2.390599 GCCATCGCTGACGCAAAGA 61.391 57.895 0.00 0.00 39.84 2.52
227 228 2.099062 GCCATCGCTGACGCAAAG 59.901 61.111 0.00 0.00 39.84 2.77
228 229 3.787676 CGCCATCGCTGACGCAAA 61.788 61.111 0.00 0.00 39.84 3.68
249 250 3.530910 AACACCCCCGCAGTCGAAG 62.531 63.158 0.00 0.00 38.10 3.79
250 251 3.552384 AACACCCCCGCAGTCGAA 61.552 61.111 0.00 0.00 38.10 3.71
251 252 4.308458 CAACACCCCCGCAGTCGA 62.308 66.667 0.00 0.00 38.10 4.20
252 253 4.308458 TCAACACCCCCGCAGTCG 62.308 66.667 0.00 0.00 0.00 4.18
253 254 1.823169 TACTCAACACCCCCGCAGTC 61.823 60.000 0.00 0.00 0.00 3.51
254 255 1.198759 ATACTCAACACCCCCGCAGT 61.199 55.000 0.00 0.00 0.00 4.40
255 256 0.828022 TATACTCAACACCCCCGCAG 59.172 55.000 0.00 0.00 0.00 5.18
256 257 1.140052 CATATACTCAACACCCCCGCA 59.860 52.381 0.00 0.00 0.00 5.69
257 258 1.140252 ACATATACTCAACACCCCCGC 59.860 52.381 0.00 0.00 0.00 6.13
258 259 2.169769 ACACATATACTCAACACCCCCG 59.830 50.000 0.00 0.00 0.00 5.73
259 260 3.926058 ACACATATACTCAACACCCCC 57.074 47.619 0.00 0.00 0.00 5.40
260 261 6.260050 CACATAACACATATACTCAACACCCC 59.740 42.308 0.00 0.00 0.00 4.95
261 262 6.238374 GCACATAACACATATACTCAACACCC 60.238 42.308 0.00 0.00 0.00 4.61
262 263 6.315144 TGCACATAACACATATACTCAACACC 59.685 38.462 0.00 0.00 0.00 4.16
263 264 7.302350 TGCACATAACACATATACTCAACAC 57.698 36.000 0.00 0.00 0.00 3.32
264 265 9.777297 ATATGCACATAACACATATACTCAACA 57.223 29.630 0.00 0.00 35.70 3.33
267 268 9.139174 CGAATATGCACATAACACATATACTCA 57.861 33.333 0.00 0.00 36.28 3.41
268 269 9.140286 ACGAATATGCACATAACACATATACTC 57.860 33.333 0.00 0.00 36.28 2.59
269 270 8.925700 CACGAATATGCACATAACACATATACT 58.074 33.333 0.00 0.00 36.28 2.12
270 271 8.708742 ACACGAATATGCACATAACACATATAC 58.291 33.333 0.00 0.00 36.28 1.47
271 272 8.825667 ACACGAATATGCACATAACACATATA 57.174 30.769 0.00 0.00 36.28 0.86
272 273 7.728847 ACACGAATATGCACATAACACATAT 57.271 32.000 0.00 0.00 38.35 1.78
273 274 8.825667 ATACACGAATATGCACATAACACATA 57.174 30.769 0.00 0.00 0.00 2.29
274 275 7.359181 CGATACACGAATATGCACATAACACAT 60.359 37.037 0.00 0.00 45.77 3.21
275 276 6.074569 CGATACACGAATATGCACATAACACA 60.075 38.462 0.00 0.00 45.77 3.72
276 277 6.289160 CGATACACGAATATGCACATAACAC 58.711 40.000 0.00 0.00 45.77 3.32
277 278 5.404066 CCGATACACGAATATGCACATAACA 59.596 40.000 0.00 0.00 45.77 2.41
278 279 5.163992 CCCGATACACGAATATGCACATAAC 60.164 44.000 0.00 0.00 45.77 1.89
279 280 4.926832 CCCGATACACGAATATGCACATAA 59.073 41.667 0.00 0.00 45.77 1.90
280 281 4.490743 CCCGATACACGAATATGCACATA 58.509 43.478 0.00 0.00 45.77 2.29
281 282 3.325870 CCCGATACACGAATATGCACAT 58.674 45.455 0.00 0.00 45.77 3.21
282 283 2.749776 CCCGATACACGAATATGCACA 58.250 47.619 0.00 0.00 45.77 4.57
283 284 1.459592 GCCCGATACACGAATATGCAC 59.540 52.381 0.00 0.00 45.77 4.57
284 285 1.606994 GGCCCGATACACGAATATGCA 60.607 52.381 0.00 0.00 45.77 3.96
285 286 1.076332 GGCCCGATACACGAATATGC 58.924 55.000 0.00 0.00 45.77 3.14
286 287 1.001520 TGGGCCCGATACACGAATATG 59.998 52.381 19.37 0.00 45.77 1.78
287 288 1.001633 GTGGGCCCGATACACGAATAT 59.998 52.381 19.37 0.00 45.77 1.28
288 289 0.390124 GTGGGCCCGATACACGAATA 59.610 55.000 19.37 0.00 45.77 1.75
289 290 1.145377 GTGGGCCCGATACACGAAT 59.855 57.895 19.37 0.00 45.77 3.34
290 291 2.580276 GTGGGCCCGATACACGAA 59.420 61.111 19.37 0.00 45.77 3.85
291 292 3.463585 GGTGGGCCCGATACACGA 61.464 66.667 19.37 0.00 45.77 4.35
292 293 3.441011 GAGGTGGGCCCGATACACG 62.441 68.421 19.37 0.00 38.74 4.49
293 294 1.623542 AAGAGGTGGGCCCGATACAC 61.624 60.000 19.37 9.24 38.74 2.90
294 295 0.031917 TAAGAGGTGGGCCCGATACA 60.032 55.000 19.37 0.00 38.74 2.29
295 296 0.680061 CTAAGAGGTGGGCCCGATAC 59.320 60.000 19.37 10.11 38.74 2.24
296 297 0.471211 CCTAAGAGGTGGGCCCGATA 60.471 60.000 19.37 0.00 38.74 2.92
297 298 1.766461 CCTAAGAGGTGGGCCCGAT 60.766 63.158 19.37 4.81 38.74 4.18
298 299 2.365105 CCTAAGAGGTGGGCCCGA 60.365 66.667 19.37 3.06 38.74 5.14
307 308 6.041069 CCTCAACTATACAAGGACCTAAGAGG 59.959 46.154 0.00 0.00 42.49 3.69
308 309 6.608002 ACCTCAACTATACAAGGACCTAAGAG 59.392 42.308 0.00 0.00 32.99 2.85
309 310 6.500336 ACCTCAACTATACAAGGACCTAAGA 58.500 40.000 0.00 0.00 32.99 2.10
310 311 6.459848 CGACCTCAACTATACAAGGACCTAAG 60.460 46.154 0.00 0.00 32.99 2.18
311 312 5.359009 CGACCTCAACTATACAAGGACCTAA 59.641 44.000 0.00 0.00 32.99 2.69
312 313 4.885907 CGACCTCAACTATACAAGGACCTA 59.114 45.833 0.00 0.00 32.99 3.08
313 314 3.700038 CGACCTCAACTATACAAGGACCT 59.300 47.826 0.00 0.00 32.99 3.85
314 315 3.446516 ACGACCTCAACTATACAAGGACC 59.553 47.826 0.00 0.00 32.99 4.46
315 316 4.421948 CACGACCTCAACTATACAAGGAC 58.578 47.826 0.00 0.00 32.99 3.85
316 317 3.446161 CCACGACCTCAACTATACAAGGA 59.554 47.826 0.00 0.00 32.99 3.36
317 318 3.782046 CCACGACCTCAACTATACAAGG 58.218 50.000 0.00 0.00 34.94 3.61
318 319 3.187700 GCCACGACCTCAACTATACAAG 58.812 50.000 0.00 0.00 0.00 3.16
319 320 2.093869 GGCCACGACCTCAACTATACAA 60.094 50.000 0.00 0.00 0.00 2.41
320 321 1.479323 GGCCACGACCTCAACTATACA 59.521 52.381 0.00 0.00 0.00 2.29
321 322 1.202498 GGGCCACGACCTCAACTATAC 60.202 57.143 4.39 0.00 0.00 1.47
322 323 1.117150 GGGCCACGACCTCAACTATA 58.883 55.000 4.39 0.00 0.00 1.31
323 324 0.907704 TGGGCCACGACCTCAACTAT 60.908 55.000 0.00 0.00 0.00 2.12
324 325 1.534476 TGGGCCACGACCTCAACTA 60.534 57.895 0.00 0.00 0.00 2.24
325 326 2.847234 TGGGCCACGACCTCAACT 60.847 61.111 0.00 0.00 0.00 3.16
326 327 2.668550 GTGGGCCACGACCTCAAC 60.669 66.667 22.83 0.00 0.00 3.18
327 328 3.948719 GGTGGGCCACGACCTCAA 61.949 66.667 29.18 0.00 41.76 3.02
332 333 3.518419 TACAACGGTGGGCCACGAC 62.518 63.158 29.18 16.10 34.83 4.34
333 334 3.232483 TACAACGGTGGGCCACGA 61.232 61.111 29.18 8.11 34.83 4.35
334 335 3.045492 GTACAACGGTGGGCCACG 61.045 66.667 29.18 24.82 34.83 4.94
335 336 0.891904 AATGTACAACGGTGGGCCAC 60.892 55.000 28.69 28.69 34.09 5.01
336 337 0.691332 TAATGTACAACGGTGGGCCA 59.309 50.000 4.97 0.00 34.09 5.36
337 338 2.047002 ATAATGTACAACGGTGGGCC 57.953 50.000 4.97 0.00 0.00 5.80
338 339 6.254157 CGTATATATAATGTACAACGGTGGGC 59.746 42.308 4.97 0.00 0.00 5.36
339 340 7.274033 CACGTATATATAATGTACAACGGTGGG 59.726 40.741 4.97 1.31 33.65 4.61
340 341 7.809331 ACACGTATATATAATGTACAACGGTGG 59.191 37.037 4.97 7.89 33.65 4.61
341 342 8.632551 CACACGTATATATAATGTACAACGGTG 58.367 37.037 14.73 0.00 33.65 4.94
342 343 8.567104 TCACACGTATATATAATGTACAACGGT 58.433 33.333 14.73 8.35 33.65 4.83
343 344 8.953507 TCACACGTATATATAATGTACAACGG 57.046 34.615 14.73 7.87 33.65 4.44
347 348 9.915629 TGCAATCACACGTATATATAATGTACA 57.084 29.630 0.00 0.00 0.00 2.90
349 350 9.361315 GGTGCAATCACACGTATATATAATGTA 57.639 33.333 9.50 2.48 44.87 2.29
350 351 8.094548 AGGTGCAATCACACGTATATATAATGT 58.905 33.333 0.00 5.45 44.87 2.71
351 352 8.382875 CAGGTGCAATCACACGTATATATAATG 58.617 37.037 0.00 0.00 44.87 1.90
352 353 8.311109 TCAGGTGCAATCACACGTATATATAAT 58.689 33.333 0.00 0.00 44.87 1.28
353 354 7.662897 TCAGGTGCAATCACACGTATATATAA 58.337 34.615 0.00 0.00 44.87 0.98
354 355 7.222000 TCAGGTGCAATCACACGTATATATA 57.778 36.000 0.00 0.00 44.87 0.86
355 356 6.096673 TCAGGTGCAATCACACGTATATAT 57.903 37.500 0.00 0.00 44.87 0.86
356 357 5.523438 TCAGGTGCAATCACACGTATATA 57.477 39.130 0.00 0.00 44.87 0.86
357 358 4.400529 TCAGGTGCAATCACACGTATAT 57.599 40.909 0.00 0.00 44.87 0.86
358 359 3.878160 TCAGGTGCAATCACACGTATA 57.122 42.857 0.00 0.00 44.87 1.47
359 360 2.760634 TCAGGTGCAATCACACGTAT 57.239 45.000 0.00 0.00 44.87 3.06
360 361 2.028567 TGATCAGGTGCAATCACACGTA 60.029 45.455 0.00 0.00 44.87 3.57
361 362 1.270785 TGATCAGGTGCAATCACACGT 60.271 47.619 0.00 0.00 44.87 4.49
362 363 1.441738 TGATCAGGTGCAATCACACG 58.558 50.000 0.00 0.00 44.87 4.49
363 364 2.553602 TGTTGATCAGGTGCAATCACAC 59.446 45.455 0.00 2.63 44.87 3.82
364 365 2.553602 GTGTTGATCAGGTGCAATCACA 59.446 45.455 0.00 0.00 44.87 3.58
365 366 2.553602 TGTGTTGATCAGGTGCAATCAC 59.446 45.455 0.00 0.00 42.40 3.06
366 367 2.861274 TGTGTTGATCAGGTGCAATCA 58.139 42.857 0.00 0.00 0.00 2.57
367 368 3.486375 CGATGTGTTGATCAGGTGCAATC 60.486 47.826 0.00 0.00 0.00 2.67
368 369 2.421073 CGATGTGTTGATCAGGTGCAAT 59.579 45.455 0.00 0.00 0.00 3.56
369 370 1.805943 CGATGTGTTGATCAGGTGCAA 59.194 47.619 0.00 0.00 0.00 4.08
370 371 1.270785 ACGATGTGTTGATCAGGTGCA 60.271 47.619 0.00 0.00 0.00 4.57
371 372 1.129251 CACGATGTGTTGATCAGGTGC 59.871 52.381 0.00 0.00 0.00 5.01
372 373 1.129251 GCACGATGTGTTGATCAGGTG 59.871 52.381 0.00 0.00 35.75 4.00
373 374 1.270785 TGCACGATGTGTTGATCAGGT 60.271 47.619 0.00 0.00 35.75 4.00
374 375 1.441738 TGCACGATGTGTTGATCAGG 58.558 50.000 0.00 0.00 35.75 3.86
375 376 3.752412 ATTGCACGATGTGTTGATCAG 57.248 42.857 0.00 0.00 35.75 2.90
376 377 4.023365 TGAAATTGCACGATGTGTTGATCA 60.023 37.500 0.00 0.00 35.75 2.92
377 378 4.475028 TGAAATTGCACGATGTGTTGATC 58.525 39.130 0.00 0.00 35.75 2.92
378 379 4.502171 TGAAATTGCACGATGTGTTGAT 57.498 36.364 0.00 0.00 35.75 2.57
379 380 3.978718 TGAAATTGCACGATGTGTTGA 57.021 38.095 0.00 0.00 35.75 3.18
380 381 4.228317 TGATGAAATTGCACGATGTGTTG 58.772 39.130 0.00 0.00 35.75 3.33
381 382 4.502171 TGATGAAATTGCACGATGTGTT 57.498 36.364 0.00 0.00 35.75 3.32
382 383 4.156373 TGATGATGAAATTGCACGATGTGT 59.844 37.500 0.00 0.00 35.75 3.72
383 384 4.664188 TGATGATGAAATTGCACGATGTG 58.336 39.130 0.00 0.00 36.51 3.21
384 385 4.968812 TGATGATGAAATTGCACGATGT 57.031 36.364 0.00 0.00 0.00 3.06
385 386 6.432107 TGTATGATGATGAAATTGCACGATG 58.568 36.000 0.00 0.00 0.00 3.84
386 387 6.622833 TGTATGATGATGAAATTGCACGAT 57.377 33.333 0.00 0.00 0.00 3.73
387 388 6.093909 ACTTGTATGATGATGAAATTGCACGA 59.906 34.615 0.00 0.00 0.00 4.35
388 389 6.260377 ACTTGTATGATGATGAAATTGCACG 58.740 36.000 0.00 0.00 0.00 5.34
389 390 8.615211 TCTACTTGTATGATGATGAAATTGCAC 58.385 33.333 0.00 0.00 0.00 4.57
390 391 8.735692 TCTACTTGTATGATGATGAAATTGCA 57.264 30.769 0.00 0.00 0.00 4.08
391 392 9.443283 GTTCTACTTGTATGATGATGAAATTGC 57.557 33.333 0.00 0.00 0.00 3.56
395 396 9.725019 ACTTGTTCTACTTGTATGATGATGAAA 57.275 29.630 0.00 0.00 0.00 2.69
396 397 9.154847 CACTTGTTCTACTTGTATGATGATGAA 57.845 33.333 0.00 0.00 0.00 2.57
397 398 8.314021 ACACTTGTTCTACTTGTATGATGATGA 58.686 33.333 0.00 0.00 0.00 2.92
398 399 8.484641 ACACTTGTTCTACTTGTATGATGATG 57.515 34.615 0.00 0.00 0.00 3.07
399 400 8.314021 TGACACTTGTTCTACTTGTATGATGAT 58.686 33.333 0.00 0.00 0.00 2.45
400 401 7.666623 TGACACTTGTTCTACTTGTATGATGA 58.333 34.615 0.00 0.00 0.00 2.92
401 402 7.600375 ACTGACACTTGTTCTACTTGTATGATG 59.400 37.037 0.00 0.00 0.00 3.07
402 403 7.671302 ACTGACACTTGTTCTACTTGTATGAT 58.329 34.615 0.00 0.00 0.00 2.45
403 404 7.050970 ACTGACACTTGTTCTACTTGTATGA 57.949 36.000 0.00 0.00 0.00 2.15
404 405 7.715265 AACTGACACTTGTTCTACTTGTATG 57.285 36.000 0.00 0.00 0.00 2.39
407 408 9.424319 CATATAACTGACACTTGTTCTACTTGT 57.576 33.333 0.00 0.00 0.00 3.16
408 409 8.383619 GCATATAACTGACACTTGTTCTACTTG 58.616 37.037 0.00 0.00 0.00 3.16
465 466 5.923684 TCGGCTTGGTTAATTTTTCAATGTC 59.076 36.000 0.00 0.00 0.00 3.06
500 502 6.183360 GCTGGATAGGACCCAAAAGAAATAAC 60.183 42.308 0.00 0.00 32.53 1.89
508 510 1.992557 ACAGCTGGATAGGACCCAAAA 59.007 47.619 19.93 0.00 32.53 2.44
536 538 8.755696 TTGCATGATTATTTTGGACACTTTAC 57.244 30.769 0.00 0.00 0.00 2.01
559 561 3.496130 TGTGTTGTGTTGTTTTGCCTTTG 59.504 39.130 0.00 0.00 0.00 2.77
595 597 7.597743 GTCCTTTCATTGCATGATGATAATTCC 59.402 37.037 0.00 0.00 39.39 3.01
754 802 2.411748 GCAGCGGCTTTTGGTTTATTTC 59.588 45.455 0.00 0.00 36.96 2.17
755 803 2.412870 GCAGCGGCTTTTGGTTTATTT 58.587 42.857 0.00 0.00 36.96 1.40
756 804 1.337728 GGCAGCGGCTTTTGGTTTATT 60.338 47.619 9.17 0.00 40.87 1.40
757 805 0.246360 GGCAGCGGCTTTTGGTTTAT 59.754 50.000 9.17 0.00 40.87 1.40
758 806 1.663173 GGCAGCGGCTTTTGGTTTA 59.337 52.632 9.17 0.00 40.87 2.01
850 943 0.400213 CAGTGGGCTGTAAAGTGGGA 59.600 55.000 0.00 0.00 37.92 4.37
1033 1145 0.031178 CGCTTTGGAGCTGCAAAAGT 59.969 50.000 29.71 0.00 46.96 2.66
1034 1146 0.311790 TCGCTTTGGAGCTGCAAAAG 59.688 50.000 29.71 25.25 46.96 2.27
1035 1147 0.311790 CTCGCTTTGGAGCTGCAAAA 59.688 50.000 29.71 17.00 46.96 2.44
1036 1148 1.518056 CCTCGCTTTGGAGCTGCAAA 61.518 55.000 28.54 28.54 46.96 3.68
1037 1149 1.968017 CCTCGCTTTGGAGCTGCAA 60.968 57.895 17.55 17.55 46.96 4.08
1058 1170 5.651576 AGTTTCTACACTACTAGTACTGCCC 59.348 44.000 5.39 0.00 0.00 5.36
1110 1250 1.005450 ACCAACACCACACCAACTTCT 59.995 47.619 0.00 0.00 0.00 2.85
1257 1406 6.715280 AGAAAATATGAAAGGAGCTCACTCA 58.285 36.000 17.19 14.34 45.42 3.41
1261 1410 6.070021 TGGAGAGAAAATATGAAAGGAGCTCA 60.070 38.462 17.19 0.00 0.00 4.26
1288 1437 2.440409 GAAATCCAGCAAGAGCAAGGA 58.560 47.619 4.55 4.55 46.58 3.36
1416 1573 8.630037 GGACCAAGAACTCAAATTAAAGAAGAA 58.370 33.333 0.00 0.00 0.00 2.52
1743 1932 2.092904 CTGGGTGGGTGGTGGGATTT 62.093 60.000 0.00 0.00 0.00 2.17
2308 2520 2.345760 GGCGTCGAGGTGGGAGTAA 61.346 63.158 7.01 0.00 0.00 2.24
2398 2625 1.341852 TCGGACAATGTGAAGGACGAA 59.658 47.619 0.00 0.00 0.00 3.85
2399 2626 0.963225 TCGGACAATGTGAAGGACGA 59.037 50.000 0.00 0.00 0.00 4.20
2400 2627 1.350193 CTCGGACAATGTGAAGGACG 58.650 55.000 0.00 0.00 0.00 4.79
2401 2628 1.079503 GCTCGGACAATGTGAAGGAC 58.920 55.000 0.00 0.00 0.00 3.85
3073 3303 1.354368 ACCGGAACAATCCTGACCATT 59.646 47.619 9.46 0.00 44.17 3.16
3211 3441 1.808531 AAAATGCTGGCAGCTGCGAA 61.809 50.000 36.50 21.01 42.97 4.70
3214 3444 1.804326 CGAAAATGCTGGCAGCTGC 60.804 57.895 36.50 30.88 42.97 5.25
3712 3945 1.815003 CATGCAACCTCTTCAACCTCC 59.185 52.381 0.00 0.00 0.00 4.30
3856 4089 2.367241 TCCGTCAATCTCTTCAACACCA 59.633 45.455 0.00 0.00 0.00 4.17
3997 4230 7.607607 GCATCATCATACCCATCACTTATACAA 59.392 37.037 0.00 0.00 0.00 2.41
4081 4314 1.747355 GTTCTGTTGAGCCCCATCATG 59.253 52.381 0.00 0.00 0.00 3.07
4285 4518 5.111989 TCAGCTATCTTCTGGACAAATTCG 58.888 41.667 0.00 0.00 32.63 3.34
4376 4609 3.561725 GGTATGTCTAGTGCTCCATTTGC 59.438 47.826 0.00 0.00 0.00 3.68
4393 4626 2.420058 AAAAGGAAGCCTCGGGTATG 57.580 50.000 0.00 0.00 30.89 2.39
4761 4994 7.326968 TGACACAAAAATAAGTCACATGTCA 57.673 32.000 0.00 0.00 41.04 3.58
4876 5109 5.273944 CAGGAACAAAGCACTCAAAACTAC 58.726 41.667 0.00 0.00 0.00 2.73
4895 5128 3.018856 GCATCATGAACACATTCCAGGA 58.981 45.455 0.00 0.00 33.49 3.86
4994 5227 4.522114 TGATTGATTATCAAAGGTCGGCA 58.478 39.130 11.88 0.22 40.12 5.69
5019 5252 1.293062 AGGGACAGTCATCCAGCAAT 58.707 50.000 2.17 0.00 40.96 3.56
5037 5270 4.916983 TGTGAGTTTCCATGGACAAAAG 57.083 40.909 15.91 0.00 0.00 2.27
5151 5385 6.707161 ACATTTCAAATCCAACTGAATGGTTG 59.293 34.615 0.00 0.00 44.17 3.77
5187 5421 3.754965 TCACCCAAGAAGGAAAGTGATG 58.245 45.455 0.00 0.00 41.22 3.07
5226 5460 6.828273 TGAAATTGGATAATACCACACTGAGG 59.172 38.462 0.00 0.00 39.85 3.86
5258 5492 7.280055 CCAAATAAACGTAACATGCACAAAAG 58.720 34.615 0.00 0.00 0.00 2.27
5278 5512 8.903820 GTCAGATTATTAGTAAACCTGCCAAAT 58.096 33.333 6.13 0.00 30.81 2.32
5314 5548 6.627087 TTCTTCAGATCAGGTTATCCAAGT 57.373 37.500 0.00 0.00 35.89 3.16
5573 5807 1.686355 TGCACCGTCAAAATTGGAGT 58.314 45.000 0.00 0.00 0.00 3.85
5658 5892 4.086457 TGGTATTGCAGAGCGGATCTATA 58.914 43.478 0.00 0.00 36.10 1.31
5724 5959 3.827302 TCTGACTTGTAGAGAGTTCCCAC 59.173 47.826 0.00 0.00 0.00 4.61
5916 6152 9.757227 ATCACAATTCTGCTATCTTCTACTTAC 57.243 33.333 0.00 0.00 0.00 2.34
5959 6195 4.103785 ACAGTTGCTGCATCCTAATAGGAT 59.896 41.667 15.78 15.78 44.24 3.24
5960 6196 3.455910 ACAGTTGCTGCATCCTAATAGGA 59.544 43.478 11.96 11.96 41.25 2.94
5961 6197 3.813443 ACAGTTGCTGCATCCTAATAGG 58.187 45.455 1.84 0.00 34.37 2.57
6002 6238 3.709987 AGCTCAAAACTGATGTTTGTGC 58.290 40.909 13.27 13.27 44.70 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.