Multiple sequence alignment - TraesCS5D01G075700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G075700 chr5D 100.000 3091 0 0 1 3091 75137107 75134017 0.000000e+00 5709
1 TraesCS5D01G075700 chr5D 98.368 2818 43 3 276 3091 565815802 565818618 0.000000e+00 4946
2 TraesCS5D01G075700 chr5D 98.261 2818 46 3 276 3091 260689962 260687146 0.000000e+00 4929
3 TraesCS5D01G075700 chr6D 98.687 2818 34 3 276 3091 51499464 51502280 0.000000e+00 4996
4 TraesCS5D01G075700 chr6D 98.155 2819 44 6 276 3091 472510963 472513776 0.000000e+00 4911
5 TraesCS5D01G075700 chr7D 98.581 2818 38 2 276 3091 115100272 115103089 0.000000e+00 4981
6 TraesCS5D01G075700 chr7D 98.297 2819 44 4 275 3091 54583767 54580951 0.000000e+00 4937
7 TraesCS5D01G075700 chr7D 98.119 2818 51 2 276 3091 245402431 245399614 0.000000e+00 4909
8 TraesCS5D01G075700 chr7D 84.472 161 23 2 276 435 199047681 199047840 1.150000e-34 158
9 TraesCS5D01G075700 chr4D 98.380 2777 42 3 317 3091 417387796 417390571 0.000000e+00 4876
10 TraesCS5D01G075700 chr4D 97.800 2818 54 6 276 3091 164897180 164899991 0.000000e+00 4854


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G075700 chr5D 75134017 75137107 3090 True 5709 5709 100.000 1 3091 1 chr5D.!!$R1 3090
1 TraesCS5D01G075700 chr5D 565815802 565818618 2816 False 4946 4946 98.368 276 3091 1 chr5D.!!$F1 2815
2 TraesCS5D01G075700 chr5D 260687146 260689962 2816 True 4929 4929 98.261 276 3091 1 chr5D.!!$R2 2815
3 TraesCS5D01G075700 chr6D 51499464 51502280 2816 False 4996 4996 98.687 276 3091 1 chr6D.!!$F1 2815
4 TraesCS5D01G075700 chr6D 472510963 472513776 2813 False 4911 4911 98.155 276 3091 1 chr6D.!!$F2 2815
5 TraesCS5D01G075700 chr7D 115100272 115103089 2817 False 4981 4981 98.581 276 3091 1 chr7D.!!$F1 2815
6 TraesCS5D01G075700 chr7D 54580951 54583767 2816 True 4937 4937 98.297 275 3091 1 chr7D.!!$R1 2816
7 TraesCS5D01G075700 chr7D 245399614 245402431 2817 True 4909 4909 98.119 276 3091 1 chr7D.!!$R2 2815
8 TraesCS5D01G075700 chr4D 417387796 417390571 2775 False 4876 4876 98.380 317 3091 1 chr4D.!!$F2 2774
9 TraesCS5D01G075700 chr4D 164897180 164899991 2811 False 4854 4854 97.800 276 3091 1 chr4D.!!$F1 2815

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
100 101 0.108138 AAGCCACCTCGTCATAGTGC 60.108 55.0 0.0 0.0 0.0 4.40 F
103 104 0.248661 CCACCTCGTCATAGTGCTCG 60.249 60.0 0.0 0.0 0.0 5.03 F
134 135 0.251916 CCCATCTCCACTGCCGTAAA 59.748 55.0 0.0 0.0 0.0 2.01 F
614 616 0.373370 CTCACTCTCACTCTCTCGCG 59.627 60.0 0.0 0.0 0.0 5.87 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1073 1075 1.077212 GGCCTCATGTGGTGCATCT 60.077 57.895 15.01 0.0 35.19 2.90 R
1236 1238 6.530120 ACTTGTCAACATAATACTGTGTGGA 58.470 36.000 0.00 0.0 0.00 4.02 R
1970 1973 8.759481 TCTCTATCTTAAGCAAATCTCTCTCA 57.241 34.615 0.00 0.0 0.00 3.27 R
2585 2588 1.489481 CTCCTCACATCCACTGCCTA 58.511 55.000 0.00 0.0 0.00 3.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.179517 CTGAGTCGCCGTCACCTC 59.820 66.667 0.00 0.00 0.00 3.85
18 19 2.282251 TGAGTCGCCGTCACCTCT 60.282 61.111 0.00 0.00 0.00 3.69
19 20 1.867919 CTGAGTCGCCGTCACCTCTT 61.868 60.000 0.00 0.00 0.00 2.85
20 21 1.153997 GAGTCGCCGTCACCTCTTC 60.154 63.158 0.00 0.00 0.00 2.87
21 22 1.587933 GAGTCGCCGTCACCTCTTCT 61.588 60.000 0.00 0.00 0.00 2.85
22 23 1.444553 GTCGCCGTCACCTCTTCTG 60.445 63.158 0.00 0.00 0.00 3.02
23 24 2.811317 CGCCGTCACCTCTTCTGC 60.811 66.667 0.00 0.00 0.00 4.26
24 25 2.659610 GCCGTCACCTCTTCTGCT 59.340 61.111 0.00 0.00 0.00 4.24
25 26 1.446966 GCCGTCACCTCTTCTGCTC 60.447 63.158 0.00 0.00 0.00 4.26
26 27 1.882989 GCCGTCACCTCTTCTGCTCT 61.883 60.000 0.00 0.00 0.00 4.09
27 28 0.108898 CCGTCACCTCTTCTGCTCTG 60.109 60.000 0.00 0.00 0.00 3.35
28 29 0.884514 CGTCACCTCTTCTGCTCTGA 59.115 55.000 0.00 0.00 0.00 3.27
29 30 1.135431 CGTCACCTCTTCTGCTCTGAG 60.135 57.143 0.00 0.00 0.00 3.35
30 31 1.892474 GTCACCTCTTCTGCTCTGAGT 59.108 52.381 6.53 0.00 0.00 3.41
31 32 2.094752 GTCACCTCTTCTGCTCTGAGTC 60.095 54.545 6.53 0.00 0.00 3.36
32 33 1.135431 CACCTCTTCTGCTCTGAGTCG 60.135 57.143 6.53 0.00 0.00 4.18
33 34 0.179140 CCTCTTCTGCTCTGAGTCGC 60.179 60.000 6.53 0.00 0.00 5.19
34 35 0.179140 CTCTTCTGCTCTGAGTCGCC 60.179 60.000 6.53 0.00 0.00 5.54
35 36 1.515952 CTTCTGCTCTGAGTCGCCG 60.516 63.158 6.53 0.00 0.00 6.46
36 37 2.206515 CTTCTGCTCTGAGTCGCCGT 62.207 60.000 6.53 0.00 0.00 5.68
37 38 1.806461 TTCTGCTCTGAGTCGCCGTT 61.806 55.000 6.53 0.00 0.00 4.44
38 39 2.049156 TGCTCTGAGTCGCCGTTG 60.049 61.111 6.53 0.00 0.00 4.10
39 40 2.811317 GCTCTGAGTCGCCGTTGG 60.811 66.667 6.53 0.00 0.00 3.77
40 41 2.125912 CTCTGAGTCGCCGTTGGG 60.126 66.667 0.00 0.00 0.00 4.12
57 58 3.368571 GCCTCTGCAGCCAACCAC 61.369 66.667 9.47 0.00 37.47 4.16
58 59 3.052082 CCTCTGCAGCCAACCACG 61.052 66.667 9.47 0.00 0.00 4.94
59 60 3.730761 CTCTGCAGCCAACCACGC 61.731 66.667 9.47 0.00 0.00 5.34
60 61 4.254709 TCTGCAGCCAACCACGCT 62.255 61.111 9.47 0.00 36.91 5.07
61 62 2.358615 CTGCAGCCAACCACGCTA 60.359 61.111 0.00 0.00 33.91 4.26
62 63 2.668212 TGCAGCCAACCACGCTAC 60.668 61.111 0.00 0.00 33.91 3.58
63 64 3.788766 GCAGCCAACCACGCTACG 61.789 66.667 0.00 0.00 33.91 3.51
64 65 2.048597 CAGCCAACCACGCTACGA 60.049 61.111 0.00 0.00 33.91 3.43
65 66 2.048503 AGCCAACCACGCTACGAC 60.049 61.111 0.00 0.00 33.91 4.34
66 67 3.116531 GCCAACCACGCTACGACC 61.117 66.667 0.00 0.00 0.00 4.79
67 68 2.433664 CCAACCACGCTACGACCC 60.434 66.667 0.00 0.00 0.00 4.46
68 69 2.654877 CAACCACGCTACGACCCT 59.345 61.111 0.00 0.00 0.00 4.34
69 70 1.445582 CAACCACGCTACGACCCTC 60.446 63.158 0.00 0.00 0.00 4.30
70 71 2.986306 AACCACGCTACGACCCTCG 61.986 63.158 0.00 0.00 46.93 4.63
71 72 4.849329 CCACGCTACGACCCTCGC 62.849 72.222 0.00 0.00 45.12 5.03
72 73 3.812019 CACGCTACGACCCTCGCT 61.812 66.667 0.00 0.00 45.12 4.93
73 74 3.060615 ACGCTACGACCCTCGCTT 61.061 61.111 0.00 0.00 45.12 4.68
74 75 2.181021 CGCTACGACCCTCGCTTT 59.819 61.111 0.00 0.00 45.12 3.51
75 76 1.872679 CGCTACGACCCTCGCTTTC 60.873 63.158 0.00 0.00 45.12 2.62
76 77 1.872679 GCTACGACCCTCGCTTTCG 60.873 63.158 0.00 0.00 45.12 3.46
77 78 1.872679 CTACGACCCTCGCTTTCGC 60.873 63.158 0.00 0.00 45.12 4.70
87 88 2.098489 GCTTTCGCGCTAAGCCAC 59.902 61.111 25.69 7.50 44.76 5.01
88 89 2.785258 CTTTCGCGCTAAGCCACC 59.215 61.111 5.56 0.00 44.76 4.61
89 90 1.741770 CTTTCGCGCTAAGCCACCT 60.742 57.895 5.56 0.00 44.76 4.00
90 91 1.696832 CTTTCGCGCTAAGCCACCTC 61.697 60.000 5.56 0.00 44.76 3.85
91 92 3.982372 TTCGCGCTAAGCCACCTCG 62.982 63.158 5.56 0.00 44.76 4.63
92 93 4.796231 CGCGCTAAGCCACCTCGT 62.796 66.667 5.56 0.00 44.76 4.18
93 94 2.886124 GCGCTAAGCCACCTCGTC 60.886 66.667 0.00 0.00 40.81 4.20
94 95 2.571757 CGCTAAGCCACCTCGTCA 59.428 61.111 0.00 0.00 0.00 4.35
95 96 1.141881 CGCTAAGCCACCTCGTCAT 59.858 57.895 0.00 0.00 0.00 3.06
96 97 0.384309 CGCTAAGCCACCTCGTCATA 59.616 55.000 0.00 0.00 0.00 2.15
97 98 1.600663 CGCTAAGCCACCTCGTCATAG 60.601 57.143 0.00 0.00 0.00 2.23
98 99 1.409427 GCTAAGCCACCTCGTCATAGT 59.591 52.381 0.00 0.00 0.00 2.12
99 100 2.799917 GCTAAGCCACCTCGTCATAGTG 60.800 54.545 0.00 0.00 0.00 2.74
100 101 0.108138 AAGCCACCTCGTCATAGTGC 60.108 55.000 0.00 0.00 0.00 4.40
101 102 0.972983 AGCCACCTCGTCATAGTGCT 60.973 55.000 0.00 0.00 0.00 4.40
102 103 0.528684 GCCACCTCGTCATAGTGCTC 60.529 60.000 0.00 0.00 0.00 4.26
103 104 0.248661 CCACCTCGTCATAGTGCTCG 60.249 60.000 0.00 0.00 0.00 5.03
104 105 0.733150 CACCTCGTCATAGTGCTCGA 59.267 55.000 0.00 0.00 0.00 4.04
105 106 1.018148 ACCTCGTCATAGTGCTCGAG 58.982 55.000 8.45 8.45 45.89 4.04
106 107 0.317436 CCTCGTCATAGTGCTCGAGC 60.317 60.000 30.42 30.42 45.27 5.03
107 108 0.317436 CTCGTCATAGTGCTCGAGCC 60.317 60.000 33.23 23.66 41.98 4.70
108 109 1.655654 CGTCATAGTGCTCGAGCCG 60.656 63.158 33.23 22.89 41.18 5.52
109 110 1.946650 GTCATAGTGCTCGAGCCGC 60.947 63.158 33.23 24.86 41.18 6.53
110 111 2.104928 CATAGTGCTCGAGCCGCA 59.895 61.111 33.23 18.49 41.18 5.69
111 112 1.948138 CATAGTGCTCGAGCCGCAG 60.948 63.158 33.23 16.06 41.18 5.18
125 126 4.512914 GCAGGGCCCCATCTCCAC 62.513 72.222 21.43 0.00 0.00 4.02
126 127 2.693864 CAGGGCCCCATCTCCACT 60.694 66.667 21.43 0.00 0.00 4.00
127 128 2.693864 AGGGCCCCATCTCCACTG 60.694 66.667 21.43 0.00 0.00 3.66
128 129 4.512914 GGGCCCCATCTCCACTGC 62.513 72.222 12.23 0.00 0.00 4.40
129 130 4.512914 GGCCCCATCTCCACTGCC 62.513 72.222 0.00 0.00 0.00 4.85
130 131 4.864334 GCCCCATCTCCACTGCCG 62.864 72.222 0.00 0.00 0.00 5.69
131 132 3.402681 CCCCATCTCCACTGCCGT 61.403 66.667 0.00 0.00 0.00 5.68
132 133 2.063979 CCCCATCTCCACTGCCGTA 61.064 63.158 0.00 0.00 0.00 4.02
133 134 1.622607 CCCCATCTCCACTGCCGTAA 61.623 60.000 0.00 0.00 0.00 3.18
134 135 0.251916 CCCATCTCCACTGCCGTAAA 59.748 55.000 0.00 0.00 0.00 2.01
135 136 1.369625 CCATCTCCACTGCCGTAAAC 58.630 55.000 0.00 0.00 0.00 2.01
136 137 0.999406 CATCTCCACTGCCGTAAACG 59.001 55.000 0.00 0.00 39.44 3.60
137 138 0.739813 ATCTCCACTGCCGTAAACGC 60.740 55.000 0.00 0.00 38.18 4.84
138 139 2.357760 TCCACTGCCGTAAACGCC 60.358 61.111 0.00 0.00 38.18 5.68
139 140 3.428282 CCACTGCCGTAAACGCCC 61.428 66.667 0.00 0.00 38.18 6.13
140 141 3.784412 CACTGCCGTAAACGCCCG 61.784 66.667 0.00 0.00 38.18 6.13
173 174 3.267860 GCCTCCGCGCTCAAGATG 61.268 66.667 5.56 0.00 0.00 2.90
174 175 3.267860 CCTCCGCGCTCAAGATGC 61.268 66.667 5.56 0.00 0.00 3.91
175 176 2.202851 CTCCGCGCTCAAGATGCT 60.203 61.111 5.56 0.00 0.00 3.79
176 177 2.510012 TCCGCGCTCAAGATGCTG 60.510 61.111 5.56 0.00 0.00 4.41
177 178 2.510012 CCGCGCTCAAGATGCTGA 60.510 61.111 5.56 0.00 0.00 4.26
178 179 2.699809 CGCGCTCAAGATGCTGAC 59.300 61.111 5.56 0.00 0.00 3.51
179 180 2.806856 CGCGCTCAAGATGCTGACC 61.807 63.158 5.56 0.00 0.00 4.02
180 181 2.806856 GCGCTCAAGATGCTGACCG 61.807 63.158 0.00 0.00 0.00 4.79
181 182 2.169789 CGCTCAAGATGCTGACCGG 61.170 63.158 0.00 0.00 0.00 5.28
182 183 2.467826 GCTCAAGATGCTGACCGGC 61.468 63.158 0.00 0.00 0.00 6.13
183 184 1.220206 CTCAAGATGCTGACCGGCT 59.780 57.895 0.00 0.00 0.00 5.52
184 185 0.809241 CTCAAGATGCTGACCGGCTC 60.809 60.000 0.00 0.00 0.00 4.70
185 186 2.169789 CAAGATGCTGACCGGCTCG 61.170 63.158 0.00 0.00 0.00 5.03
186 187 4.521062 AGATGCTGACCGGCTCGC 62.521 66.667 0.00 1.08 0.00 5.03
202 203 4.874977 GCCGACCACGCTAGCCTC 62.875 72.222 9.66 0.00 38.29 4.70
203 204 3.141488 CCGACCACGCTAGCCTCT 61.141 66.667 9.66 0.00 38.29 3.69
204 205 2.103143 CGACCACGCTAGCCTCTG 59.897 66.667 9.66 1.86 0.00 3.35
205 206 2.202810 GACCACGCTAGCCTCTGC 60.203 66.667 9.66 0.00 37.95 4.26
206 207 2.997315 ACCACGCTAGCCTCTGCA 60.997 61.111 9.66 0.00 41.13 4.41
207 208 2.265739 CCACGCTAGCCTCTGCAA 59.734 61.111 9.66 0.00 41.13 4.08
208 209 2.103042 CCACGCTAGCCTCTGCAAC 61.103 63.158 9.66 0.00 41.13 4.17
209 210 1.374631 CACGCTAGCCTCTGCAACA 60.375 57.895 9.66 0.00 41.13 3.33
210 211 0.950555 CACGCTAGCCTCTGCAACAA 60.951 55.000 9.66 0.00 41.13 2.83
211 212 0.671781 ACGCTAGCCTCTGCAACAAG 60.672 55.000 9.66 0.00 41.13 3.16
212 213 0.671781 CGCTAGCCTCTGCAACAAGT 60.672 55.000 9.66 0.00 41.13 3.16
213 214 1.082690 GCTAGCCTCTGCAACAAGTC 58.917 55.000 2.29 0.00 41.13 3.01
214 215 1.609061 GCTAGCCTCTGCAACAAGTCA 60.609 52.381 2.29 0.00 41.13 3.41
215 216 2.938756 GCTAGCCTCTGCAACAAGTCAT 60.939 50.000 2.29 0.00 41.13 3.06
216 217 2.283145 AGCCTCTGCAACAAGTCATT 57.717 45.000 0.00 0.00 41.13 2.57
217 218 3.423539 AGCCTCTGCAACAAGTCATTA 57.576 42.857 0.00 0.00 41.13 1.90
218 219 3.077359 AGCCTCTGCAACAAGTCATTAC 58.923 45.455 0.00 0.00 41.13 1.89
219 220 3.077359 GCCTCTGCAACAAGTCATTACT 58.923 45.455 0.00 0.00 35.74 2.24
220 221 4.020218 AGCCTCTGCAACAAGTCATTACTA 60.020 41.667 0.00 0.00 41.13 1.82
221 222 4.093556 GCCTCTGCAACAAGTCATTACTAC 59.906 45.833 0.00 0.00 33.94 2.73
222 223 5.482908 CCTCTGCAACAAGTCATTACTACT 58.517 41.667 0.00 0.00 33.75 2.57
223 224 5.349817 CCTCTGCAACAAGTCATTACTACTG 59.650 44.000 0.00 0.00 33.75 2.74
224 225 6.096673 TCTGCAACAAGTCATTACTACTGA 57.903 37.500 0.00 0.00 33.75 3.41
225 226 5.926542 TCTGCAACAAGTCATTACTACTGAC 59.073 40.000 0.00 0.00 42.68 3.51
226 227 4.994852 TGCAACAAGTCATTACTACTGACC 59.005 41.667 3.53 0.00 43.24 4.02
227 228 5.221641 TGCAACAAGTCATTACTACTGACCT 60.222 40.000 3.53 0.00 43.24 3.85
228 229 5.701290 GCAACAAGTCATTACTACTGACCTT 59.299 40.000 3.53 0.00 43.24 3.50
229 230 6.128526 GCAACAAGTCATTACTACTGACCTTC 60.129 42.308 3.53 0.00 43.24 3.46
230 231 6.665992 ACAAGTCATTACTACTGACCTTCA 57.334 37.500 3.53 0.00 43.24 3.02
231 232 7.062749 ACAAGTCATTACTACTGACCTTCAA 57.937 36.000 3.53 0.00 43.24 2.69
232 233 7.155328 ACAAGTCATTACTACTGACCTTCAAG 58.845 38.462 3.53 0.00 43.24 3.02
233 234 6.919775 AGTCATTACTACTGACCTTCAAGT 57.080 37.500 3.53 0.00 43.24 3.16
234 235 6.926313 AGTCATTACTACTGACCTTCAAGTC 58.074 40.000 3.53 0.00 43.24 3.01
235 236 6.493802 AGTCATTACTACTGACCTTCAAGTCA 59.506 38.462 3.53 0.00 43.24 3.41
236 237 6.586844 GTCATTACTACTGACCTTCAAGTCAC 59.413 42.308 0.00 0.00 41.78 3.67
237 238 5.464030 TTACTACTGACCTTCAAGTCACC 57.536 43.478 0.00 0.00 41.78 4.02
238 239 3.577919 ACTACTGACCTTCAAGTCACCT 58.422 45.455 0.00 0.00 41.78 4.00
239 240 3.967987 ACTACTGACCTTCAAGTCACCTT 59.032 43.478 0.00 0.00 41.78 3.50
240 241 3.477210 ACTGACCTTCAAGTCACCTTC 57.523 47.619 0.00 0.00 41.78 3.46
241 242 2.771943 ACTGACCTTCAAGTCACCTTCA 59.228 45.455 0.00 0.00 41.78 3.02
242 243 3.392616 ACTGACCTTCAAGTCACCTTCAT 59.607 43.478 0.00 0.00 41.78 2.57
243 244 3.743521 TGACCTTCAAGTCACCTTCATG 58.256 45.455 0.00 0.00 41.78 3.07
244 245 2.485814 GACCTTCAAGTCACCTTCATGC 59.514 50.000 0.00 0.00 36.73 4.06
245 246 1.815003 CCTTCAAGTCACCTTCATGCC 59.185 52.381 0.00 0.00 0.00 4.40
246 247 1.466167 CTTCAAGTCACCTTCATGCCG 59.534 52.381 0.00 0.00 0.00 5.69
247 248 0.955428 TCAAGTCACCTTCATGCCGC 60.955 55.000 0.00 0.00 0.00 6.53
248 249 1.675641 AAGTCACCTTCATGCCGCC 60.676 57.895 0.00 0.00 0.00 6.13
249 250 2.359850 GTCACCTTCATGCCGCCA 60.360 61.111 0.00 0.00 0.00 5.69
250 251 1.971167 GTCACCTTCATGCCGCCAA 60.971 57.895 0.00 0.00 0.00 4.52
251 252 1.675310 TCACCTTCATGCCGCCAAG 60.675 57.895 0.00 0.00 0.00 3.61
252 253 3.064324 ACCTTCATGCCGCCAAGC 61.064 61.111 0.00 0.00 0.00 4.01
253 254 2.753043 CCTTCATGCCGCCAAGCT 60.753 61.111 0.00 0.00 0.00 3.74
254 255 1.451927 CCTTCATGCCGCCAAGCTA 60.452 57.895 0.00 0.00 0.00 3.32
255 256 0.820891 CCTTCATGCCGCCAAGCTAT 60.821 55.000 0.00 0.00 0.00 2.97
256 257 0.590195 CTTCATGCCGCCAAGCTATC 59.410 55.000 0.00 0.00 0.00 2.08
257 258 0.819259 TTCATGCCGCCAAGCTATCC 60.819 55.000 0.00 0.00 0.00 2.59
258 259 1.228063 CATGCCGCCAAGCTATCCT 60.228 57.895 0.00 0.00 0.00 3.24
259 260 1.228063 ATGCCGCCAAGCTATCCTG 60.228 57.895 0.00 0.00 0.00 3.86
260 261 3.282920 GCCGCCAAGCTATCCTGC 61.283 66.667 0.00 0.00 0.00 4.85
261 262 2.592861 CCGCCAAGCTATCCTGCC 60.593 66.667 0.00 0.00 0.00 4.85
262 263 2.507944 CGCCAAGCTATCCTGCCT 59.492 61.111 0.00 0.00 0.00 4.75
263 264 1.596477 CGCCAAGCTATCCTGCCTC 60.596 63.158 0.00 0.00 0.00 4.70
264 265 1.835693 GCCAAGCTATCCTGCCTCT 59.164 57.895 0.00 0.00 0.00 3.69
265 266 0.534652 GCCAAGCTATCCTGCCTCTG 60.535 60.000 0.00 0.00 0.00 3.35
266 267 0.835941 CCAAGCTATCCTGCCTCTGT 59.164 55.000 0.00 0.00 0.00 3.41
267 268 1.474677 CCAAGCTATCCTGCCTCTGTG 60.475 57.143 0.00 0.00 0.00 3.66
268 269 0.835941 AAGCTATCCTGCCTCTGTGG 59.164 55.000 0.00 0.00 39.35 4.17
500 501 1.814527 GGCCGTTACTCAGACCGAT 59.185 57.895 0.00 0.00 0.00 4.18
614 616 0.373370 CTCACTCTCACTCTCTCGCG 59.627 60.000 0.00 0.00 0.00 5.87
637 639 1.003696 TCTCCTCTCTGCTCTTCGACA 59.996 52.381 0.00 0.00 0.00 4.35
837 839 3.185880 TCTTGGTGAGCTAGGGTAAGT 57.814 47.619 0.00 0.00 0.00 2.24
1073 1075 1.691196 CTTTCTGAACCCACCTGCAA 58.309 50.000 0.00 0.00 0.00 4.08
1197 1199 4.772100 TGGAATCATTTTCTTCTGAACCCC 59.228 41.667 0.00 0.00 31.02 4.95
1970 1973 2.893489 GGCAAAGAAGGAGGTTGAACAT 59.107 45.455 0.00 0.00 0.00 2.71
2459 2462 0.326618 CTACTCCACCCACCCTCCAT 60.327 60.000 0.00 0.00 0.00 3.41
2529 2532 1.900545 GCCACACCCCACCTCTAGAC 61.901 65.000 0.00 0.00 0.00 2.59
2585 2588 0.178921 TGAGGAAGAGGAGGCAGTGT 60.179 55.000 0.00 0.00 0.00 3.55
2669 2672 0.250901 GTTCAAGAGGAGGCTGGCAA 60.251 55.000 3.38 0.00 0.00 4.52
2725 2728 2.147387 AGTTCTTGTCCCTGGCGGT 61.147 57.895 0.00 0.00 0.00 5.68
2780 2783 2.946341 GCTAGGAGACAGGCAGTACTCA 60.946 54.545 0.00 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.867919 AAGAGGTGACGGCGACTCAG 61.868 60.000 16.62 0.00 32.52 3.35
1 2 1.863662 GAAGAGGTGACGGCGACTCA 61.864 60.000 16.62 4.65 32.52 3.41
2 3 1.153997 GAAGAGGTGACGGCGACTC 60.154 63.158 16.62 15.02 0.00 3.36
3 4 1.604023 AGAAGAGGTGACGGCGACT 60.604 57.895 16.62 5.82 0.00 4.18
4 5 1.444553 CAGAAGAGGTGACGGCGAC 60.445 63.158 16.62 8.59 0.00 5.19
5 6 2.962569 CAGAAGAGGTGACGGCGA 59.037 61.111 16.62 0.00 0.00 5.54
6 7 2.811317 GCAGAAGAGGTGACGGCG 60.811 66.667 4.80 4.80 0.00 6.46
7 8 1.446966 GAGCAGAAGAGGTGACGGC 60.447 63.158 0.00 0.00 0.00 5.68
8 9 0.108898 CAGAGCAGAAGAGGTGACGG 60.109 60.000 0.00 0.00 0.00 4.79
9 10 0.884514 TCAGAGCAGAAGAGGTGACG 59.115 55.000 0.00 0.00 0.00 4.35
10 11 1.892474 ACTCAGAGCAGAAGAGGTGAC 59.108 52.381 0.00 0.00 33.76 3.67
11 12 2.166829 GACTCAGAGCAGAAGAGGTGA 58.833 52.381 0.00 0.00 33.76 4.02
12 13 1.135431 CGACTCAGAGCAGAAGAGGTG 60.135 57.143 0.00 0.00 33.76 4.00
13 14 1.173043 CGACTCAGAGCAGAAGAGGT 58.827 55.000 0.00 0.00 33.76 3.85
14 15 0.179140 GCGACTCAGAGCAGAAGAGG 60.179 60.000 0.00 0.00 33.76 3.69
15 16 0.179140 GGCGACTCAGAGCAGAAGAG 60.179 60.000 0.00 0.00 35.56 2.85
16 17 1.886585 GGCGACTCAGAGCAGAAGA 59.113 57.895 0.00 0.00 34.54 2.87
17 18 1.515952 CGGCGACTCAGAGCAGAAG 60.516 63.158 0.00 0.00 34.54 2.85
18 19 1.806461 AACGGCGACTCAGAGCAGAA 61.806 55.000 16.62 0.00 34.54 3.02
19 20 2.268802 AACGGCGACTCAGAGCAGA 61.269 57.895 16.62 0.00 34.54 4.26
20 21 2.091112 CAACGGCGACTCAGAGCAG 61.091 63.158 16.62 0.00 34.54 4.24
21 22 2.049156 CAACGGCGACTCAGAGCA 60.049 61.111 16.62 0.00 34.54 4.26
22 23 2.811317 CCAACGGCGACTCAGAGC 60.811 66.667 16.62 0.00 0.00 4.09
23 24 2.125912 CCCAACGGCGACTCAGAG 60.126 66.667 16.62 0.00 0.00 3.35
40 41 3.368571 GTGGTTGGCTGCAGAGGC 61.369 66.667 20.43 5.00 45.19 4.70
41 42 3.052082 CGTGGTTGGCTGCAGAGG 61.052 66.667 20.43 0.00 0.00 3.69
42 43 2.786539 TAGCGTGGTTGGCTGCAGAG 62.787 60.000 20.43 0.00 41.69 3.35
43 44 2.878089 TAGCGTGGTTGGCTGCAGA 61.878 57.895 20.43 0.00 41.69 4.26
44 45 2.358615 TAGCGTGGTTGGCTGCAG 60.359 61.111 10.11 10.11 41.69 4.41
45 46 2.668212 GTAGCGTGGTTGGCTGCA 60.668 61.111 0.50 0.00 41.90 4.41
46 47 3.788766 CGTAGCGTGGTTGGCTGC 61.789 66.667 0.00 0.00 41.69 5.25
47 48 2.048597 TCGTAGCGTGGTTGGCTG 60.049 61.111 0.00 0.00 41.69 4.85
48 49 2.048503 GTCGTAGCGTGGTTGGCT 60.049 61.111 0.00 0.00 44.35 4.75
49 50 3.116531 GGTCGTAGCGTGGTTGGC 61.117 66.667 0.00 0.00 0.00 4.52
50 51 2.433664 GGGTCGTAGCGTGGTTGG 60.434 66.667 0.00 0.00 0.00 3.77
51 52 1.445582 GAGGGTCGTAGCGTGGTTG 60.446 63.158 0.00 0.00 0.00 3.77
52 53 2.968206 GAGGGTCGTAGCGTGGTT 59.032 61.111 0.00 0.00 0.00 3.67
53 54 3.437795 CGAGGGTCGTAGCGTGGT 61.438 66.667 0.00 0.00 34.72 4.16
54 55 4.849329 GCGAGGGTCGTAGCGTGG 62.849 72.222 0.00 0.00 42.81 4.94
55 56 2.814183 AAAGCGAGGGTCGTAGCGTG 62.814 60.000 0.00 0.00 42.81 5.34
56 57 2.539263 GAAAGCGAGGGTCGTAGCGT 62.539 60.000 0.00 0.00 42.81 5.07
57 58 1.872679 GAAAGCGAGGGTCGTAGCG 60.873 63.158 0.00 0.00 42.81 4.26
58 59 1.872679 CGAAAGCGAGGGTCGTAGC 60.873 63.158 0.00 0.00 42.81 3.58
59 60 4.379221 CGAAAGCGAGGGTCGTAG 57.621 61.111 0.00 0.00 42.81 3.51
71 72 1.696832 GAGGTGGCTTAGCGCGAAAG 61.697 60.000 12.10 17.91 40.44 2.62
72 73 1.740296 GAGGTGGCTTAGCGCGAAA 60.740 57.895 12.10 1.40 40.44 3.46
73 74 2.125673 GAGGTGGCTTAGCGCGAA 60.126 61.111 12.10 0.99 40.44 4.70
76 77 2.886124 GACGAGGTGGCTTAGCGC 60.886 66.667 0.00 0.00 38.13 5.92
77 78 0.384309 TATGACGAGGTGGCTTAGCG 59.616 55.000 0.00 0.00 0.00 4.26
78 79 1.409427 ACTATGACGAGGTGGCTTAGC 59.591 52.381 0.00 0.00 0.00 3.09
79 80 2.799917 GCACTATGACGAGGTGGCTTAG 60.800 54.545 0.00 0.00 0.00 2.18
80 81 1.136305 GCACTATGACGAGGTGGCTTA 59.864 52.381 0.00 0.00 0.00 3.09
81 82 0.108138 GCACTATGACGAGGTGGCTT 60.108 55.000 0.00 0.00 0.00 4.35
82 83 0.972983 AGCACTATGACGAGGTGGCT 60.973 55.000 0.00 0.00 0.00 4.75
83 84 0.528684 GAGCACTATGACGAGGTGGC 60.529 60.000 0.00 0.00 0.00 5.01
84 85 0.248661 CGAGCACTATGACGAGGTGG 60.249 60.000 0.00 0.00 0.00 4.61
85 86 0.733150 TCGAGCACTATGACGAGGTG 59.267 55.000 0.00 0.00 0.00 4.00
86 87 1.018148 CTCGAGCACTATGACGAGGT 58.982 55.000 0.00 0.00 45.22 3.85
87 88 3.835686 CTCGAGCACTATGACGAGG 57.164 57.895 0.00 0.00 45.22 4.63
89 90 1.728069 GGCTCGAGCACTATGACGA 59.272 57.895 36.27 0.00 44.36 4.20
90 91 1.655654 CGGCTCGAGCACTATGACG 60.656 63.158 36.27 24.57 44.36 4.35
91 92 1.946650 GCGGCTCGAGCACTATGAC 60.947 63.158 36.27 17.49 44.36 3.06
92 93 2.341807 CTGCGGCTCGAGCACTATGA 62.342 60.000 36.27 13.99 44.36 2.15
93 94 1.948138 CTGCGGCTCGAGCACTATG 60.948 63.158 36.27 20.97 44.36 2.23
94 95 2.415010 CTGCGGCTCGAGCACTAT 59.585 61.111 36.27 0.00 44.36 2.12
95 96 3.826754 CCTGCGGCTCGAGCACTA 61.827 66.667 36.27 20.68 44.36 2.74
108 109 4.512914 GTGGAGATGGGGCCCTGC 62.513 72.222 25.93 15.65 0.00 4.85
109 110 2.693864 AGTGGAGATGGGGCCCTG 60.694 66.667 25.93 0.00 0.00 4.45
110 111 2.693864 CAGTGGAGATGGGGCCCT 60.694 66.667 25.93 9.44 0.00 5.19
111 112 4.512914 GCAGTGGAGATGGGGCCC 62.513 72.222 18.17 18.17 0.00 5.80
112 113 4.512914 GGCAGTGGAGATGGGGCC 62.513 72.222 0.00 0.00 0.00 5.80
113 114 4.864334 CGGCAGTGGAGATGGGGC 62.864 72.222 0.00 0.00 0.00 5.80
114 115 1.622607 TTACGGCAGTGGAGATGGGG 61.623 60.000 0.00 0.00 0.00 4.96
115 116 0.251916 TTTACGGCAGTGGAGATGGG 59.748 55.000 0.00 0.00 0.00 4.00
116 117 1.369625 GTTTACGGCAGTGGAGATGG 58.630 55.000 0.00 0.00 0.00 3.51
117 118 0.999406 CGTTTACGGCAGTGGAGATG 59.001 55.000 0.00 0.00 35.37 2.90
118 119 0.739813 GCGTTTACGGCAGTGGAGAT 60.740 55.000 0.00 0.00 40.23 2.75
119 120 1.373748 GCGTTTACGGCAGTGGAGA 60.374 57.895 0.00 0.00 40.23 3.71
120 121 3.165498 GCGTTTACGGCAGTGGAG 58.835 61.111 0.00 0.00 40.23 3.86
156 157 3.267860 CATCTTGAGCGCGGAGGC 61.268 66.667 8.83 0.00 0.00 4.70
157 158 3.267860 GCATCTTGAGCGCGGAGG 61.268 66.667 8.83 0.00 0.00 4.30
158 159 2.202851 AGCATCTTGAGCGCGGAG 60.203 61.111 8.83 1.01 37.01 4.63
159 160 2.510012 CAGCATCTTGAGCGCGGA 60.510 61.111 8.83 0.00 37.01 5.54
160 161 2.510012 TCAGCATCTTGAGCGCGG 60.510 61.111 8.83 0.00 37.01 6.46
161 162 2.699809 GTCAGCATCTTGAGCGCG 59.300 61.111 0.00 0.00 37.01 6.86
162 163 3.096791 GGTCAGCATCTTGAGCGC 58.903 61.111 0.00 0.00 36.06 5.92
164 165 2.467826 GCCGGTCAGCATCTTGAGC 61.468 63.158 1.90 0.00 41.07 4.26
165 166 0.809241 GAGCCGGTCAGCATCTTGAG 60.809 60.000 1.90 0.00 34.23 3.02
166 167 1.219124 GAGCCGGTCAGCATCTTGA 59.781 57.895 1.90 0.00 34.23 3.02
167 168 2.169789 CGAGCCGGTCAGCATCTTG 61.170 63.158 1.90 0.00 34.23 3.02
168 169 2.185350 CGAGCCGGTCAGCATCTT 59.815 61.111 1.90 0.00 34.23 2.40
169 170 4.521062 GCGAGCCGGTCAGCATCT 62.521 66.667 1.90 0.00 34.23 2.90
185 186 4.874977 GAGGCTAGCGTGGTCGGC 62.875 72.222 15.88 0.00 37.56 5.54
186 187 3.141488 AGAGGCTAGCGTGGTCGG 61.141 66.667 15.88 0.00 37.56 4.79
187 188 2.103143 CAGAGGCTAGCGTGGTCG 59.897 66.667 15.88 0.00 40.37 4.79
188 189 2.202810 GCAGAGGCTAGCGTGGTC 60.203 66.667 15.88 5.80 36.96 4.02
189 190 2.583441 TTGCAGAGGCTAGCGTGGT 61.583 57.895 15.88 0.00 41.91 4.16
190 191 2.103042 GTTGCAGAGGCTAGCGTGG 61.103 63.158 15.88 7.94 41.91 4.94
191 192 0.950555 TTGTTGCAGAGGCTAGCGTG 60.951 55.000 15.88 10.20 41.91 5.34
192 193 0.671781 CTTGTTGCAGAGGCTAGCGT 60.672 55.000 10.22 10.22 41.91 5.07
193 194 0.671781 ACTTGTTGCAGAGGCTAGCG 60.672 55.000 9.00 0.00 41.91 4.26
194 195 1.082690 GACTTGTTGCAGAGGCTAGC 58.917 55.000 6.04 6.04 41.91 3.42
195 196 2.462456 TGACTTGTTGCAGAGGCTAG 57.538 50.000 0.00 0.00 41.91 3.42
196 197 3.423539 AATGACTTGTTGCAGAGGCTA 57.576 42.857 0.00 0.00 41.91 3.93
197 198 2.283145 AATGACTTGTTGCAGAGGCT 57.717 45.000 0.00 0.00 41.91 4.58
198 199 3.077359 AGTAATGACTTGTTGCAGAGGC 58.923 45.455 0.00 0.00 34.15 4.70
199 200 5.349817 CAGTAGTAATGACTTGTTGCAGAGG 59.650 44.000 0.00 0.00 37.10 3.69
200 201 6.090088 GTCAGTAGTAATGACTTGTTGCAGAG 59.910 42.308 20.61 0.00 43.03 3.35
201 202 5.926542 GTCAGTAGTAATGACTTGTTGCAGA 59.073 40.000 20.61 0.00 43.03 4.26
202 203 5.120830 GGTCAGTAGTAATGACTTGTTGCAG 59.879 44.000 25.17 0.00 45.18 4.41
203 204 4.994852 GGTCAGTAGTAATGACTTGTTGCA 59.005 41.667 25.17 0.00 45.18 4.08
204 205 5.238583 AGGTCAGTAGTAATGACTTGTTGC 58.761 41.667 25.17 11.21 45.18 4.17
205 206 6.929049 TGAAGGTCAGTAGTAATGACTTGTTG 59.071 38.462 25.17 0.00 45.18 3.33
206 207 7.062749 TGAAGGTCAGTAGTAATGACTTGTT 57.937 36.000 25.17 17.50 45.18 2.83
207 208 6.665992 TGAAGGTCAGTAGTAATGACTTGT 57.334 37.500 25.17 13.61 45.18 3.16
208 209 7.155328 ACTTGAAGGTCAGTAGTAATGACTTG 58.845 38.462 25.17 11.89 45.18 3.16
209 210 7.015292 TGACTTGAAGGTCAGTAGTAATGACTT 59.985 37.037 25.17 17.95 45.18 3.01
210 211 6.493802 TGACTTGAAGGTCAGTAGTAATGACT 59.506 38.462 25.17 10.72 45.18 3.41
211 212 6.586844 GTGACTTGAAGGTCAGTAGTAATGAC 59.413 42.308 19.92 19.92 45.31 3.06
212 213 6.295123 GGTGACTTGAAGGTCAGTAGTAATGA 60.295 42.308 0.00 0.00 45.31 2.57
213 214 5.869888 GGTGACTTGAAGGTCAGTAGTAATG 59.130 44.000 0.00 0.00 45.31 1.90
214 215 5.780793 AGGTGACTTGAAGGTCAGTAGTAAT 59.219 40.000 0.00 0.00 45.31 1.89
215 216 5.145564 AGGTGACTTGAAGGTCAGTAGTAA 58.854 41.667 0.00 0.00 45.31 2.24
216 217 4.737578 AGGTGACTTGAAGGTCAGTAGTA 58.262 43.478 0.00 0.00 45.31 1.82
217 218 3.577919 AGGTGACTTGAAGGTCAGTAGT 58.422 45.455 0.00 0.00 45.31 2.73
232 233 1.926511 CTTGGCGGCATGAAGGTGAC 61.927 60.000 18.64 0.00 0.00 3.67
233 234 1.675310 CTTGGCGGCATGAAGGTGA 60.675 57.895 18.64 0.00 0.00 4.02
234 235 2.879907 CTTGGCGGCATGAAGGTG 59.120 61.111 18.64 0.00 0.00 4.00
235 236 2.196997 TAGCTTGGCGGCATGAAGGT 62.197 55.000 26.13 21.13 34.17 3.50
236 237 0.820891 ATAGCTTGGCGGCATGAAGG 60.821 55.000 26.13 9.88 34.17 3.46
237 238 0.590195 GATAGCTTGGCGGCATGAAG 59.410 55.000 26.13 16.01 34.17 3.02
238 239 0.819259 GGATAGCTTGGCGGCATGAA 60.819 55.000 26.13 14.36 34.17 2.57
239 240 1.227943 GGATAGCTTGGCGGCATGA 60.228 57.895 26.13 6.10 34.17 3.07
240 241 1.228063 AGGATAGCTTGGCGGCATG 60.228 57.895 14.32 17.13 34.17 4.06
241 242 1.228063 CAGGATAGCTTGGCGGCAT 60.228 57.895 14.32 0.00 34.17 4.40
242 243 2.190313 CAGGATAGCTTGGCGGCA 59.810 61.111 7.97 7.97 34.17 5.69
243 244 3.282920 GCAGGATAGCTTGGCGGC 61.283 66.667 0.00 0.00 0.00 6.53
244 245 2.592861 GGCAGGATAGCTTGGCGG 60.593 66.667 0.00 0.00 36.96 6.13
246 247 0.534652 CAGAGGCAGGATAGCTTGGC 60.535 60.000 8.70 8.70 45.42 4.52
247 248 0.835941 ACAGAGGCAGGATAGCTTGG 59.164 55.000 0.00 0.00 34.17 3.61
248 249 1.474677 CCACAGAGGCAGGATAGCTTG 60.475 57.143 0.00 0.00 34.17 4.01
249 250 0.835941 CCACAGAGGCAGGATAGCTT 59.164 55.000 0.00 0.00 34.17 3.74
250 251 2.525784 CCACAGAGGCAGGATAGCT 58.474 57.895 0.00 0.00 34.17 3.32
260 261 1.315981 TACTCGAGCAGCCACAGAGG 61.316 60.000 13.61 0.00 41.84 3.69
261 262 0.528017 TTACTCGAGCAGCCACAGAG 59.472 55.000 13.61 0.00 35.28 3.35
262 263 0.966179 TTTACTCGAGCAGCCACAGA 59.034 50.000 13.61 0.00 0.00 3.41
263 264 2.015736 ATTTACTCGAGCAGCCACAG 57.984 50.000 13.61 0.00 0.00 3.66
264 265 2.738643 GCTATTTACTCGAGCAGCCACA 60.739 50.000 13.61 0.00 36.20 4.17
265 266 1.861575 GCTATTTACTCGAGCAGCCAC 59.138 52.381 13.61 0.00 36.20 5.01
266 267 1.480545 TGCTATTTACTCGAGCAGCCA 59.519 47.619 13.61 0.00 41.18 4.75
267 268 2.225068 TGCTATTTACTCGAGCAGCC 57.775 50.000 13.61 0.00 41.18 4.85
271 272 7.437267 TGGTAGTTTTATGCTATTTACTCGAGC 59.563 37.037 13.61 0.00 36.72 5.03
272 273 8.753175 GTGGTAGTTTTATGCTATTTACTCGAG 58.247 37.037 11.84 11.84 0.00 4.04
273 274 8.472413 AGTGGTAGTTTTATGCTATTTACTCGA 58.528 33.333 0.00 0.00 0.00 4.04
614 616 0.746659 GAAGAGCAGAGAGGAGAGGC 59.253 60.000 0.00 0.00 0.00 4.70
1073 1075 1.077212 GGCCTCATGTGGTGCATCT 60.077 57.895 15.01 0.00 35.19 2.90
1197 1199 7.121168 ACTTGTCATCCTTGTAAATACATGTGG 59.879 37.037 9.11 0.00 35.89 4.17
1236 1238 6.530120 ACTTGTCAACATAATACTGTGTGGA 58.470 36.000 0.00 0.00 0.00 4.02
1970 1973 8.759481 TCTCTATCTTAAGCAAATCTCTCTCA 57.241 34.615 0.00 0.00 0.00 3.27
2153 2156 5.708736 TGTACACCCCATATCTTCACATT 57.291 39.130 0.00 0.00 0.00 2.71
2459 2462 5.454755 GGTGGAGTAGGCTATTTATGAGCAA 60.455 44.000 0.00 0.00 41.98 3.91
2529 2532 1.622811 GCTCTGGATCCATCTAGGGTG 59.377 57.143 16.63 4.54 38.08 4.61
2585 2588 1.489481 CTCCTCACATCCACTGCCTA 58.511 55.000 0.00 0.00 0.00 3.93
2669 2672 4.630644 TGCACTTCTCCAAGATCTTCTT 57.369 40.909 4.57 0.00 37.14 2.52
2725 2728 2.725312 CCCTGAGCTCTTGCGCCTA 61.725 63.158 16.19 0.00 45.42 3.93
2780 2783 1.717077 TCTGGTAGAAGGGTGAGGAGT 59.283 52.381 0.00 0.00 0.00 3.85
2859 2863 8.791675 CATAGCTCAGACTCTCATTCATACTTA 58.208 37.037 0.00 0.00 0.00 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.