Multiple sequence alignment - TraesCS5D01G074600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G074600 chr5D 100.000 6892 0 0 1 6892 73793637 73800528 0.000000e+00 12728.0
1 TraesCS5D01G074600 chr5D 97.186 853 21 3 1 851 553903019 553903870 0.000000e+00 1439.0
2 TraesCS5D01G074600 chr5B 89.808 6093 415 98 906 6892 78713023 78707031 0.000000e+00 7622.0
3 TraesCS5D01G074600 chr5B 94.872 39 2 0 849 887 65541554 65541516 2.080000e-05 62.1
4 TraesCS5D01G074600 chr5A 89.486 2102 117 39 4136 6176 68935085 68937143 0.000000e+00 2562.0
5 TraesCS5D01G074600 chr5A 88.982 1679 127 29 2495 4139 68933080 68934734 0.000000e+00 2023.0
6 TraesCS5D01G074600 chr5A 91.411 652 29 6 6263 6892 68941144 68941790 0.000000e+00 869.0
7 TraesCS5D01G074600 chr5A 93.561 528 32 2 1975 2502 68932429 68932954 0.000000e+00 785.0
8 TraesCS5D01G074600 chr5A 91.197 568 33 8 945 1501 68931414 68931975 0.000000e+00 756.0
9 TraesCS5D01G074600 chr5A 83.878 459 46 17 1484 1931 68931988 68932429 4.970000e-111 412.0
10 TraesCS5D01G074600 chr1D 97.442 860 17 4 1 857 70334895 70334038 0.000000e+00 1461.0
11 TraesCS5D01G074600 chr7D 96.366 853 27 2 1 852 393035316 393036165 0.000000e+00 1400.0
12 TraesCS5D01G074600 chr1B 95.550 854 36 2 1 852 207376008 207376861 0.000000e+00 1365.0
13 TraesCS5D01G074600 chr1B 95.000 40 1 1 850 889 155430565 155430603 2.080000e-05 62.1
14 TraesCS5D01G074600 chr2B 94.049 857 45 3 1 855 488047139 488046287 0.000000e+00 1295.0
15 TraesCS5D01G074600 chr2B 95.122 41 1 1 850 890 297438973 297438934 5.770000e-06 63.9
16 TraesCS5D01G074600 chr2B 92.857 42 2 1 850 891 221488522 221488562 7.470000e-05 60.2
17 TraesCS5D01G074600 chr4A 94.063 859 28 10 1 852 45143050 45142208 0.000000e+00 1282.0
18 TraesCS5D01G074600 chr1A 93.443 854 53 3 1 852 130153384 130154236 0.000000e+00 1264.0
19 TraesCS5D01G074600 chr3B 96.897 709 20 2 145 852 106976751 106976044 0.000000e+00 1186.0
20 TraesCS5D01G074600 chr3B 95.000 40 1 1 850 889 513668956 513668918 2.080000e-05 62.1
21 TraesCS5D01G074600 chr7B 90.232 819 73 6 14 826 637305711 637304894 0.000000e+00 1062.0
22 TraesCS5D01G074600 chr6B 89.425 643 47 9 1002 1632 247209165 247209798 0.000000e+00 791.0
23 TraesCS5D01G074600 chr6B 93.023 43 2 1 850 892 555212697 555212656 2.080000e-05 62.1
24 TraesCS5D01G074600 chr6B 86.207 58 3 4 850 907 224856570 224856622 2.680000e-04 58.4
25 TraesCS5D01G074600 chr3A 95.000 40 1 1 850 889 620471359 620471321 2.080000e-05 62.1
26 TraesCS5D01G074600 chr3D 92.857 42 2 1 850 891 613430539 613430499 7.470000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G074600 chr5D 73793637 73800528 6891 False 12728.0 12728 100.0000 1 6892 1 chr5D.!!$F1 6891
1 TraesCS5D01G074600 chr5D 553903019 553903870 851 False 1439.0 1439 97.1860 1 851 1 chr5D.!!$F2 850
2 TraesCS5D01G074600 chr5B 78707031 78713023 5992 True 7622.0 7622 89.8080 906 6892 1 chr5B.!!$R2 5986
3 TraesCS5D01G074600 chr5A 68931414 68937143 5729 False 1307.6 2562 89.4208 945 6176 5 chr5A.!!$F2 5231
4 TraesCS5D01G074600 chr5A 68941144 68941790 646 False 869.0 869 91.4110 6263 6892 1 chr5A.!!$F1 629
5 TraesCS5D01G074600 chr1D 70334038 70334895 857 True 1461.0 1461 97.4420 1 857 1 chr1D.!!$R1 856
6 TraesCS5D01G074600 chr7D 393035316 393036165 849 False 1400.0 1400 96.3660 1 852 1 chr7D.!!$F1 851
7 TraesCS5D01G074600 chr1B 207376008 207376861 853 False 1365.0 1365 95.5500 1 852 1 chr1B.!!$F2 851
8 TraesCS5D01G074600 chr2B 488046287 488047139 852 True 1295.0 1295 94.0490 1 855 1 chr2B.!!$R2 854
9 TraesCS5D01G074600 chr4A 45142208 45143050 842 True 1282.0 1282 94.0630 1 852 1 chr4A.!!$R1 851
10 TraesCS5D01G074600 chr1A 130153384 130154236 852 False 1264.0 1264 93.4430 1 852 1 chr1A.!!$F1 851
11 TraesCS5D01G074600 chr3B 106976044 106976751 707 True 1186.0 1186 96.8970 145 852 1 chr3B.!!$R1 707
12 TraesCS5D01G074600 chr7B 637304894 637305711 817 True 1062.0 1062 90.2320 14 826 1 chr7B.!!$R1 812
13 TraesCS5D01G074600 chr6B 247209165 247209798 633 False 791.0 791 89.4250 1002 1632 1 chr6B.!!$F2 630

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
316 322 0.252103 TCGCTCACCCCTAGTTTCCT 60.252 55.000 0.00 0.00 0.00 3.36 F
1271 1290 0.173481 GAGATGCTCACGCTGGTACA 59.827 55.000 0.00 0.00 36.97 2.90 F
1598 1656 0.886490 GGCACACTCTCCAACAGGTG 60.886 60.000 0.00 0.00 35.99 4.00 F
1601 1659 1.414181 CACACTCTCCAACAGGTGTCT 59.586 52.381 0.00 0.00 40.34 3.41 F
2095 2165 2.345341 GCAACACTGTGTTTTTGCTGTC 59.655 45.455 22.66 5.36 38.77 3.51 F
3304 3515 0.249073 TCTGCGCTTAGATTCTCGGC 60.249 55.000 9.73 0.00 0.00 5.54 F
3791 4030 0.038526 TCTTTTCCGTCCTCTGCGTC 60.039 55.000 0.00 0.00 0.00 5.19 F
5073 5724 1.406539 AGCTGCTCTGTTTGGTTTGTG 59.593 47.619 0.00 0.00 0.00 3.33 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1580 1638 0.179045 ACACCTGTTGGAGAGTGTGC 60.179 55.000 0.00 0.0 41.69 4.57 R
2386 2456 0.390340 CACTAGAGCACACGCCACAT 60.390 55.000 0.00 0.0 39.83 3.21 R
2620 2822 0.689055 AGACCAGCAAGCATGTCTCA 59.311 50.000 9.71 0.0 32.85 3.27 R
2677 2880 1.052124 TACCCAGATAAGGCCCACGG 61.052 60.000 0.00 0.0 0.00 4.94 R
3772 4011 0.038526 GACGCAGAGGACGGAAAAGA 60.039 55.000 0.00 0.0 34.00 2.52 R
5043 5694 1.001406 ACAGAGCAGCTCTTACACCAC 59.999 52.381 23.18 0.0 38.99 4.16 R
5327 5992 1.134220 GTGGGGTCAACAACAGTCTGA 60.134 52.381 6.91 0.0 0.00 3.27 R
6785 7504 0.168788 AGTCAATGCACGCCGAATTG 59.831 50.000 0.00 0.0 33.50 2.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
95 96 4.356405 ACATGTTGACAGATCAGGTTCA 57.644 40.909 0.00 0.00 35.83 3.18
220 221 3.616821 TGGATCAGAAGACAAATAACGCG 59.383 43.478 3.53 3.53 0.00 6.01
316 322 0.252103 TCGCTCACCCCTAGTTTCCT 60.252 55.000 0.00 0.00 0.00 3.36
469 477 3.518634 TGCAAATTTATCCCTTTCGCC 57.481 42.857 0.00 0.00 0.00 5.54
810 827 5.235186 AGCTCGTAGATGATGTAAACATTGC 59.765 40.000 0.00 0.00 33.63 3.56
852 869 6.430007 AGCCATGATGACCTTCTCTAAAAAT 58.570 36.000 0.00 0.00 0.00 1.82
855 872 7.255277 GCCATGATGACCTTCTCTAAAAATACC 60.255 40.741 0.00 0.00 0.00 2.73
856 873 7.775093 CCATGATGACCTTCTCTAAAAATACCA 59.225 37.037 0.00 0.00 0.00 3.25
858 875 6.816640 TGATGACCTTCTCTAAAAATACCACG 59.183 38.462 0.00 0.00 0.00 4.94
859 876 6.349243 TGACCTTCTCTAAAAATACCACGA 57.651 37.500 0.00 0.00 0.00 4.35
860 877 6.161381 TGACCTTCTCTAAAAATACCACGAC 58.839 40.000 0.00 0.00 0.00 4.34
861 878 5.166398 ACCTTCTCTAAAAATACCACGACG 58.834 41.667 0.00 0.00 0.00 5.12
862 879 5.047802 ACCTTCTCTAAAAATACCACGACGA 60.048 40.000 0.00 0.00 0.00 4.20
863 880 5.515626 CCTTCTCTAAAAATACCACGACGAG 59.484 44.000 0.00 0.00 0.00 4.18
864 881 5.633830 TCTCTAAAAATACCACGACGAGT 57.366 39.130 0.00 0.67 0.00 4.18
865 882 6.741992 TCTCTAAAAATACCACGACGAGTA 57.258 37.500 0.00 3.25 0.00 2.59
866 883 7.144722 TCTCTAAAAATACCACGACGAGTAA 57.855 36.000 0.00 0.00 0.00 2.24
867 884 7.592938 TCTCTAAAAATACCACGACGAGTAAA 58.407 34.615 0.00 0.00 0.00 2.01
868 885 8.246180 TCTCTAAAAATACCACGACGAGTAAAT 58.754 33.333 0.00 0.00 0.00 1.40
869 886 8.398491 TCTAAAAATACCACGACGAGTAAATC 57.602 34.615 0.00 0.00 0.00 2.17
887 904 3.635510 GGAACGGAGGGAGCAGAT 58.364 61.111 0.00 0.00 0.00 2.90
888 905 1.144936 GGAACGGAGGGAGCAGATG 59.855 63.158 0.00 0.00 0.00 2.90
889 906 1.617947 GGAACGGAGGGAGCAGATGT 61.618 60.000 0.00 0.00 0.00 3.06
890 907 0.460987 GAACGGAGGGAGCAGATGTG 60.461 60.000 0.00 0.00 0.00 3.21
891 908 0.904865 AACGGAGGGAGCAGATGTGA 60.905 55.000 0.00 0.00 0.00 3.58
892 909 1.326213 ACGGAGGGAGCAGATGTGAG 61.326 60.000 0.00 0.00 0.00 3.51
893 910 1.326213 CGGAGGGAGCAGATGTGAGT 61.326 60.000 0.00 0.00 0.00 3.41
894 911 0.908198 GGAGGGAGCAGATGTGAGTT 59.092 55.000 0.00 0.00 0.00 3.01
895 912 2.111384 GGAGGGAGCAGATGTGAGTTA 58.889 52.381 0.00 0.00 0.00 2.24
896 913 2.102252 GGAGGGAGCAGATGTGAGTTAG 59.898 54.545 0.00 0.00 0.00 2.34
897 914 2.763448 GAGGGAGCAGATGTGAGTTAGT 59.237 50.000 0.00 0.00 0.00 2.24
898 915 3.177228 AGGGAGCAGATGTGAGTTAGTT 58.823 45.455 0.00 0.00 0.00 2.24
899 916 4.353777 AGGGAGCAGATGTGAGTTAGTTA 58.646 43.478 0.00 0.00 0.00 2.24
900 917 4.965532 AGGGAGCAGATGTGAGTTAGTTAT 59.034 41.667 0.00 0.00 0.00 1.89
901 918 5.426833 AGGGAGCAGATGTGAGTTAGTTATT 59.573 40.000 0.00 0.00 0.00 1.40
902 919 5.755861 GGGAGCAGATGTGAGTTAGTTATTC 59.244 44.000 0.00 0.00 0.00 1.75
903 920 6.407525 GGGAGCAGATGTGAGTTAGTTATTCT 60.408 42.308 0.00 0.00 0.00 2.40
904 921 6.478344 GGAGCAGATGTGAGTTAGTTATTCTG 59.522 42.308 0.00 0.00 0.00 3.02
925 942 5.416326 TCTGTTTCAAAAAGTCGGAAAGGAA 59.584 36.000 0.00 0.00 31.75 3.36
942 959 1.943340 GGAAGAAACCCATCGCATCTC 59.057 52.381 0.00 0.00 0.00 2.75
1112 1131 4.208686 CTCCCGTGCTACCCTCGC 62.209 72.222 0.00 0.00 0.00 5.03
1271 1290 0.173481 GAGATGCTCACGCTGGTACA 59.827 55.000 0.00 0.00 36.97 2.90
1272 1291 4.970076 GGAGATGCTCACGCTGGTACAG 62.970 59.091 0.00 0.00 45.88 2.74
1298 1317 1.269517 CGCCACCTCTCTGCTTATCTC 60.270 57.143 0.00 0.00 0.00 2.75
1300 1319 2.392662 CCACCTCTCTGCTTATCTCCA 58.607 52.381 0.00 0.00 0.00 3.86
1303 1322 4.776837 CCACCTCTCTGCTTATCTCCATAT 59.223 45.833 0.00 0.00 0.00 1.78
1322 1341 1.874019 CGACGGATGGACGAAGCTG 60.874 63.158 0.00 0.00 37.61 4.24
1325 1349 0.892755 ACGGATGGACGAAGCTGTTA 59.107 50.000 0.00 0.00 37.61 2.41
1352 1376 5.290386 AGTTTAGTTTCAGTCTCGGTCTTG 58.710 41.667 0.00 0.00 0.00 3.02
1403 1427 4.084287 TCTCGTGGTTTGTGGATAGTACT 58.916 43.478 0.00 0.00 0.00 2.73
1404 1428 5.255687 TCTCGTGGTTTGTGGATAGTACTA 58.744 41.667 4.77 4.77 0.00 1.82
1405 1429 5.356190 TCTCGTGGTTTGTGGATAGTACTAG 59.644 44.000 8.85 0.00 0.00 2.57
1406 1430 5.012239 TCGTGGTTTGTGGATAGTACTAGT 58.988 41.667 8.85 0.00 0.00 2.57
1407 1431 6.179756 TCGTGGTTTGTGGATAGTACTAGTA 58.820 40.000 8.85 0.00 0.00 1.82
1408 1432 6.094048 TCGTGGTTTGTGGATAGTACTAGTAC 59.906 42.308 23.03 23.03 36.35 2.73
1412 1436 6.271566 GTTTGTGGATAGTACTAGTACCTGC 58.728 44.000 25.97 19.48 36.75 4.85
1474 1498 7.445121 TCGAGCTATCTGGATGATTATTTGTT 58.555 34.615 0.00 0.00 36.65 2.83
1562 1620 4.795278 CGCTCCATTTTGAAATAGACAAGC 59.205 41.667 0.00 0.00 0.00 4.01
1580 1638 6.373774 AGACAAGCTTTTAGACATTGAGATGG 59.626 38.462 0.00 0.00 37.60 3.51
1596 1654 1.451504 TGGCACACTCTCCAACAGG 59.548 57.895 0.00 0.00 0.00 4.00
1597 1655 1.344953 TGGCACACTCTCCAACAGGT 61.345 55.000 0.00 0.00 0.00 4.00
1598 1656 0.886490 GGCACACTCTCCAACAGGTG 60.886 60.000 0.00 0.00 35.99 4.00
1600 1658 1.871080 CACACTCTCCAACAGGTGTC 58.129 55.000 0.00 0.00 40.34 3.67
1601 1659 1.414181 CACACTCTCCAACAGGTGTCT 59.586 52.381 0.00 0.00 40.34 3.41
1603 1661 2.505819 ACACTCTCCAACAGGTGTCTTT 59.494 45.455 0.00 0.00 38.32 2.52
1635 1694 9.195411 ACTTTTTGTGCACATATGTTATTCAAG 57.805 29.630 22.39 14.91 0.00 3.02
1729 1793 5.702209 ACCGGTATTTACGAACTGAACAATT 59.298 36.000 4.49 0.00 0.00 2.32
1747 1811 6.153212 ACAATTACGAACAACGATCTGAAG 57.847 37.500 0.00 0.00 45.77 3.02
1756 1821 6.734171 CGAACAACGATCTGAAGAGATTTTTC 59.266 38.462 0.00 0.00 45.77 2.29
1757 1822 7.359598 CGAACAACGATCTGAAGAGATTTTTCT 60.360 37.037 0.00 0.00 45.77 2.52
1758 1823 7.126726 ACAACGATCTGAAGAGATTTTTCTG 57.873 36.000 0.00 0.00 39.19 3.02
1789 1856 5.066634 TCAAAGTTTGACCGCATGTTTTCTA 59.933 36.000 14.35 0.00 34.08 2.10
1795 1863 4.890088 TGACCGCATGTTTTCTAGTAAGT 58.110 39.130 0.00 0.00 0.00 2.24
1796 1864 4.927425 TGACCGCATGTTTTCTAGTAAGTC 59.073 41.667 0.00 0.00 0.00 3.01
1797 1865 4.890088 ACCGCATGTTTTCTAGTAAGTCA 58.110 39.130 0.00 0.00 0.00 3.41
1798 1866 5.488341 ACCGCATGTTTTCTAGTAAGTCAT 58.512 37.500 0.00 0.00 0.00 3.06
1799 1867 5.351465 ACCGCATGTTTTCTAGTAAGTCATG 59.649 40.000 16.90 16.90 35.69 3.07
1800 1868 5.351465 CCGCATGTTTTCTAGTAAGTCATGT 59.649 40.000 19.59 0.00 35.25 3.21
1801 1869 6.128282 CCGCATGTTTTCTAGTAAGTCATGTT 60.128 38.462 19.59 0.00 35.25 2.71
1802 1870 7.064134 CCGCATGTTTTCTAGTAAGTCATGTTA 59.936 37.037 19.59 0.00 35.25 2.41
1803 1871 7.898309 CGCATGTTTTCTAGTAAGTCATGTTAC 59.102 37.037 19.59 0.00 35.25 2.50
1866 1934 9.995003 TTTTAGATGAATTGGCACATTTTAACT 57.005 25.926 0.00 0.00 39.30 2.24
1874 1942 5.446143 TGGCACATTTTAACTGTTCGATT 57.554 34.783 0.00 0.00 0.00 3.34
1875 1943 5.218885 TGGCACATTTTAACTGTTCGATTG 58.781 37.500 0.00 0.00 0.00 2.67
1876 1944 4.089923 GGCACATTTTAACTGTTCGATTGC 59.910 41.667 0.00 0.15 0.00 3.56
1878 1946 4.621034 CACATTTTAACTGTTCGATTGCCC 59.379 41.667 0.00 0.00 0.00 5.36
1879 1947 4.279671 ACATTTTAACTGTTCGATTGCCCA 59.720 37.500 0.00 0.00 0.00 5.36
1880 1948 5.047377 ACATTTTAACTGTTCGATTGCCCAT 60.047 36.000 0.00 0.00 0.00 4.00
1883 1951 3.575965 AACTGTTCGATTGCCCATTTC 57.424 42.857 0.00 0.00 0.00 2.17
1892 1962 5.406649 TCGATTGCCCATTTCAATGTTAAC 58.593 37.500 0.00 0.00 34.59 2.01
1902 1972 7.871973 CCCATTTCAATGTTAACTTTGTCATCA 59.128 33.333 25.12 10.02 34.60 3.07
1903 1973 9.426837 CCATTTCAATGTTAACTTTGTCATCAT 57.573 29.630 25.12 13.24 34.60 2.45
1930 2000 7.301789 TGTGTTATGTCACATTTGGTTAATCG 58.698 34.615 0.00 0.00 42.36 3.34
1931 2001 6.745450 GTGTTATGTCACATTTGGTTAATCGG 59.255 38.462 0.00 0.00 38.12 4.18
1933 2003 5.560966 ATGTCACATTTGGTTAATCGGAC 57.439 39.130 0.00 0.00 31.58 4.79
1949 2019 9.864034 GTTAATCGGACTCAATTATATGTTGTG 57.136 33.333 3.53 3.92 0.00 3.33
2091 2161 2.736192 AGTTGCAACACTGTGTTTTTGC 59.264 40.909 30.11 22.66 38.77 3.68
2095 2165 2.345341 GCAACACTGTGTTTTTGCTGTC 59.655 45.455 22.66 5.36 38.77 3.51
2256 2326 3.004315 TCGATTACATGATACAGCTCGCA 59.996 43.478 0.00 0.00 0.00 5.10
2317 2387 2.744202 CACCCAACTCAGCATTCTACAC 59.256 50.000 0.00 0.00 0.00 2.90
2338 2408 4.514441 CACCATTGACCTGCATCTATCTTC 59.486 45.833 0.00 0.00 0.00 2.87
2355 2425 8.082672 TCTATCTTCTCTGAATGAACATTCCA 57.917 34.615 20.15 9.48 44.93 3.53
2388 2458 8.468720 TCATTTAGCATCACAAATGACAAATG 57.531 30.769 5.80 13.22 43.00 2.32
2391 2461 4.562082 AGCATCACAAATGACAAATGTGG 58.438 39.130 18.48 8.89 43.53 4.17
2392 2462 3.123959 GCATCACAAATGACAAATGTGGC 59.876 43.478 18.48 13.26 43.53 5.01
2442 2512 8.574251 TTGTGGTACTAAAATGATGCACTATT 57.426 30.769 0.00 0.00 0.00 1.73
2444 2514 7.826744 TGTGGTACTAAAATGATGCACTATTGA 59.173 33.333 0.00 0.00 0.00 2.57
2474 2544 8.929260 TCTGTCTCCAATTATGATTATGCAAT 57.071 30.769 0.00 0.00 0.00 3.56
2475 2545 8.789762 TCTGTCTCCAATTATGATTATGCAATG 58.210 33.333 0.00 0.00 0.00 2.82
2487 2557 6.614160 TGATTATGCAATGGATGATAAAGCG 58.386 36.000 0.00 0.00 0.00 4.68
2492 2562 5.577835 TGCAATGGATGATAAAGCGTTAAC 58.422 37.500 0.00 0.00 0.00 2.01
2527 2729 8.710835 TGTACTCATGTTAAATCGCTCATTAA 57.289 30.769 0.00 0.00 0.00 1.40
2543 2745 6.740905 CGCTCATTAACATCGTTTAACATGTT 59.259 34.615 16.68 16.68 43.91 2.71
2605 2807 4.469945 TGGGAATAGGGTAACTCTGAAGTG 59.530 45.833 0.00 0.00 35.36 3.16
2620 2822 3.081061 TGAAGTGCACAAGAACTGTTGT 58.919 40.909 21.04 0.00 41.47 3.32
2632 2834 3.562973 AGAACTGTTGTGAGACATGCTTG 59.437 43.478 0.00 0.00 0.00 4.01
2654 2857 7.443259 TTGCTGGTCTAACACCTAATTTTAC 57.557 36.000 0.00 0.00 46.98 2.01
2677 2880 9.906660 TTACAATGTTACTCATTTCCAATTGAC 57.093 29.630 7.12 0.00 43.33 3.18
2716 2919 7.458397 TGGGTATGTGTTAAGTTCTTGAAGAT 58.542 34.615 0.00 0.00 0.00 2.40
2737 2940 6.367983 AGATATCCCTGAAAATGCTTTGCTA 58.632 36.000 0.00 0.00 0.00 3.49
2772 2975 4.949856 AGACGGGTTGCATGAAAGATATTT 59.050 37.500 0.00 0.00 0.00 1.40
2850 3061 7.275560 TGCTTTTCTCTGTTTTTACAAGCTTTC 59.724 33.333 0.00 0.00 37.02 2.62
2870 3081 6.461110 TTTCTCTACTTCCCTTACATACCG 57.539 41.667 0.00 0.00 0.00 4.02
2936 3147 0.817654 CGGTGCTAGACCATCTGACA 59.182 55.000 10.68 0.00 46.55 3.58
2982 3193 6.464222 AGTGTTACTTCTACTGCAGCAATAA 58.536 36.000 15.27 2.36 0.00 1.40
3001 3212 9.139734 AGCAATAATTACATGAGTCCATCATTT 57.860 29.630 0.00 0.00 46.97 2.32
3031 3242 7.546778 TTGTTTCTCTATGCATATTTACGCA 57.453 32.000 6.92 0.92 43.45 5.24
3032 3243 7.546778 TGTTTCTCTATGCATATTTACGCAA 57.453 32.000 6.92 0.00 42.37 4.85
3146 3357 4.016706 GTAGCTGCCGGTGGTGGT 62.017 66.667 1.90 0.00 0.00 4.16
3251 3462 2.284190 GAGGTAGGTTGAAGAGCATGC 58.716 52.381 10.51 10.51 0.00 4.06
3252 3463 1.912043 AGGTAGGTTGAAGAGCATGCT 59.088 47.619 22.92 22.92 0.00 3.79
3290 3501 0.368227 GCGATCTTGACACTTCTGCG 59.632 55.000 0.00 0.00 0.00 5.18
3304 3515 0.249073 TCTGCGCTTAGATTCTCGGC 60.249 55.000 9.73 0.00 0.00 5.54
3420 3631 6.673106 ACTATGATCGCTAGTTACATGTCTG 58.327 40.000 0.00 0.00 0.00 3.51
3488 3702 8.312669 AGACAGAGAATATTTACAGCCTTACT 57.687 34.615 0.00 0.00 0.00 2.24
3508 3729 7.439655 CCTTACTTAACTGGATTAGTGCAGATC 59.560 40.741 13.70 0.00 45.73 2.75
3511 3732 7.341805 ACTTAACTGGATTAGTGCAGATCATT 58.658 34.615 13.70 0.22 45.73 2.57
3523 3744 5.104610 AGTGCAGATCATTCCTATCAGTTGT 60.105 40.000 0.00 0.00 0.00 3.32
3570 3791 8.289618 TGTGTAGTTTTCTTTCTGAATGCATAC 58.710 33.333 0.00 0.00 34.24 2.39
3584 3806 1.098050 GCATACAACTGCTTCCTGGG 58.902 55.000 0.00 0.00 39.12 4.45
3595 3817 4.660771 ACTGCTTCCTGGGTAATAGCTATT 59.339 41.667 22.09 22.09 33.15 1.73
3626 3856 3.381272 GCTGCCAAAAGTTATGCTGGATA 59.619 43.478 0.00 0.00 0.00 2.59
3652 3882 6.809869 ACAGCTTTATTGCAACTTCTCTTTT 58.190 32.000 0.00 0.00 34.99 2.27
3743 3974 7.686438 AACTAGCATGTGAATGACATTTGTA 57.314 32.000 1.39 0.00 43.20 2.41
3751 3982 5.359576 TGTGAATGACATTTGTATTAGGGCC 59.640 40.000 1.39 0.00 0.00 5.80
3757 3988 2.702592 TTTGTATTAGGGCCTGACGG 57.297 50.000 18.53 0.00 0.00 4.79
3765 4004 1.061546 AGGGCCTGACGGACTTTTTA 58.938 50.000 4.50 0.00 38.87 1.52
3766 4005 1.003233 AGGGCCTGACGGACTTTTTAG 59.997 52.381 4.50 0.00 38.87 1.85
3767 4006 1.271217 GGGCCTGACGGACTTTTTAGT 60.271 52.381 0.84 0.00 38.87 2.24
3768 4007 2.501261 GGCCTGACGGACTTTTTAGTT 58.499 47.619 0.00 0.00 34.48 2.24
3770 4009 3.317149 GGCCTGACGGACTTTTTAGTTTT 59.683 43.478 0.00 0.00 34.48 2.43
3789 4028 1.508632 TTTCTTTTCCGTCCTCTGCG 58.491 50.000 0.00 0.00 0.00 5.18
3790 4029 0.391597 TTCTTTTCCGTCCTCTGCGT 59.608 50.000 0.00 0.00 0.00 5.24
3791 4030 0.038526 TCTTTTCCGTCCTCTGCGTC 60.039 55.000 0.00 0.00 0.00 5.19
3793 4032 1.798234 TTTTCCGTCCTCTGCGTCGA 61.798 55.000 0.00 0.00 0.00 4.20
3823 4070 7.013274 TGAGGAACTTTAGATGGTTTTGAACTG 59.987 37.037 0.00 0.00 41.55 3.16
3858 4105 9.039165 ACCATCTTGGAATGTAATTGATTTCTT 57.961 29.630 0.00 0.00 40.96 2.52
3886 4133 4.338118 CCAACTTTTGACCTGTTTGAGCTA 59.662 41.667 0.00 0.00 0.00 3.32
3925 4172 4.389077 GTGACCTTGGATAGTTCAAGTTCG 59.611 45.833 0.00 0.00 36.75 3.95
3932 4179 5.902681 TGGATAGTTCAAGTTCGTATCAGG 58.097 41.667 0.00 0.00 0.00 3.86
3934 4181 5.978322 GGATAGTTCAAGTTCGTATCAGGAC 59.022 44.000 0.00 0.00 0.00 3.85
3989 4236 2.408050 CACTTACCACTGAGCACTGTC 58.592 52.381 0.00 0.00 0.00 3.51
4017 4264 3.005155 AGCAAAGCTGACATTTTGGAGAC 59.995 43.478 12.04 0.25 37.57 3.36
4033 4281 2.531206 GAGACGAGTATGAACCACTGC 58.469 52.381 0.00 0.00 0.00 4.40
4087 4335 1.815757 ACCTTGTACAACCACCTCCT 58.184 50.000 3.59 0.00 0.00 3.69
4108 4356 4.020128 CCTAAAGTGGCAGAGTTCTAGGTT 60.020 45.833 0.00 0.00 0.00 3.50
4109 4357 3.409026 AAGTGGCAGAGTTCTAGGTTG 57.591 47.619 0.00 0.00 0.00 3.77
4111 4359 2.300437 AGTGGCAGAGTTCTAGGTTGTC 59.700 50.000 0.00 0.00 0.00 3.18
4123 4371 1.674359 AGGTTGTCGTGTTTGCATCA 58.326 45.000 0.00 0.00 0.00 3.07
4164 4766 6.743575 ATAAAAATCTGAGTCCAGTTTCCG 57.256 37.500 0.00 0.00 41.16 4.30
4168 4770 3.655276 TCTGAGTCCAGTTTCCGTAAC 57.345 47.619 0.00 0.00 41.16 2.50
4178 4780 8.152898 AGTCCAGTTTCCGTAACTTTTAGTATT 58.847 33.333 0.00 0.00 44.73 1.89
4259 4861 3.988379 TTGGTTGAAACTGAGATGCAC 57.012 42.857 0.00 0.00 0.00 4.57
4280 4882 5.648092 GCACCCTCACAAATGACTAAACTAT 59.352 40.000 0.00 0.00 0.00 2.12
4309 4911 5.063944 GTGAACTAGTGTGTATTCTGCATGG 59.936 44.000 0.00 0.00 0.00 3.66
4319 4921 2.022764 TTCTGCATGGGATACACACG 57.977 50.000 0.00 0.00 39.74 4.49
4455 5086 4.037923 TGATGGTGAACAAGAAAAGCCTTC 59.962 41.667 0.00 0.00 0.00 3.46
4456 5087 3.360867 TGGTGAACAAGAAAAGCCTTCA 58.639 40.909 0.00 0.00 0.00 3.02
4526 5174 9.461312 TGCCTATCTAAACATGAAATACAGTTT 57.539 29.630 0.00 0.00 35.63 2.66
4793 5444 9.136952 CCAATCTTTTGAGCTAATTTTTCTCTG 57.863 33.333 0.00 0.00 34.60 3.35
4959 5610 6.654793 CTCAAGCAGAGGTATGTTTTAGAC 57.345 41.667 0.00 0.00 40.84 2.59
4993 5644 7.067494 ACTCCTGAAATAACATAGTTGCAATCC 59.933 37.037 0.59 0.00 0.00 3.01
4997 5648 9.941664 CTGAAATAACATAGTTGCAATCCTTAG 57.058 33.333 0.59 0.00 0.00 2.18
5013 5664 3.449737 TCCTTAGTACCATGTGTAGTGGC 59.550 47.826 10.32 0.00 40.49 5.01
5073 5724 1.406539 AGCTGCTCTGTTTGGTTTGTG 59.593 47.619 0.00 0.00 0.00 3.33
5075 5726 2.796032 GCTGCTCTGTTTGGTTTGTGAC 60.796 50.000 0.00 0.00 0.00 3.67
5086 5750 2.582052 GGTTTGTGACCCTCATGAACA 58.418 47.619 0.00 0.00 43.06 3.18
5087 5751 2.955660 GGTTTGTGACCCTCATGAACAA 59.044 45.455 5.92 5.92 43.06 2.83
5088 5752 3.573967 GGTTTGTGACCCTCATGAACAAT 59.426 43.478 9.99 0.00 43.06 2.71
5089 5753 4.764823 GGTTTGTGACCCTCATGAACAATA 59.235 41.667 9.99 1.22 43.06 1.90
5090 5754 5.335661 GGTTTGTGACCCTCATGAACAATAC 60.336 44.000 9.99 10.40 43.06 1.89
5091 5755 4.908601 TGTGACCCTCATGAACAATACT 57.091 40.909 0.00 0.00 0.00 2.12
5092 5756 4.578871 TGTGACCCTCATGAACAATACTG 58.421 43.478 0.00 0.00 0.00 2.74
5093 5757 3.941483 GTGACCCTCATGAACAATACTGG 59.059 47.826 0.00 0.00 0.00 4.00
5094 5758 3.587061 TGACCCTCATGAACAATACTGGT 59.413 43.478 0.00 0.00 0.00 4.00
5095 5759 3.941483 GACCCTCATGAACAATACTGGTG 59.059 47.826 0.00 0.00 0.00 4.17
5096 5760 3.587061 ACCCTCATGAACAATACTGGTGA 59.413 43.478 0.00 0.00 0.00 4.02
5124 5788 5.351458 GTGAATTTCTTGAGCAAACTGGTT 58.649 37.500 0.00 0.00 0.00 3.67
5143 5807 2.893489 GTTGCTCTCAAACCAGGGAAAT 59.107 45.455 0.00 0.00 33.37 2.17
5198 5862 2.555199 CAAAGAGGAAGGTGCCGATAG 58.445 52.381 0.00 0.00 0.00 2.08
5215 5879 4.093514 CGATAGCACTGAAAGCACAAATG 58.906 43.478 0.00 0.00 37.60 2.32
5343 6008 5.455392 CATTGAATCAGACTGTTGTTGACC 58.545 41.667 1.59 0.00 0.00 4.02
5350 6015 2.091885 AGACTGTTGTTGACCCCACATT 60.092 45.455 0.00 0.00 0.00 2.71
5493 6158 2.927477 TGAGCGCATTAGTTTCCGTTAG 59.073 45.455 11.47 0.00 0.00 2.34
5639 6316 5.192927 TGAACTATAAGTTGCCCTGAATGG 58.807 41.667 0.00 0.00 38.80 3.16
5802 6481 8.627487 TTTTGCACAAAAGAACAGTGTTATAG 57.373 30.769 8.88 2.52 35.57 1.31
5838 6517 5.006386 GGATATTTTCTCCATAGGTGGCTG 58.994 45.833 0.00 0.00 45.63 4.85
5864 6560 0.971386 ACTTGGCTGCAAAATGGAGG 59.029 50.000 0.50 0.00 36.25 4.30
5897 6593 2.530151 AGGAGCACCTGAAGGCCA 60.530 61.111 5.01 0.00 45.92 5.36
5899 6595 1.000396 GGAGCACCTGAAGGCCAAT 60.000 57.895 5.01 0.00 39.32 3.16
5903 6600 0.743097 GCACCTGAAGGCCAATGATC 59.257 55.000 5.01 0.00 39.32 2.92
5919 6616 5.243981 CAATGATCACTTCCAGTCTTCTGT 58.756 41.667 0.00 0.00 39.82 3.41
5921 6618 2.533266 TCACTTCCAGTCTTCTGTGC 57.467 50.000 0.00 0.00 39.82 4.57
5924 6621 2.042464 ACTTCCAGTCTTCTGTGCAGA 58.958 47.619 0.00 0.00 39.82 4.26
5929 6626 2.353208 CCAGTCTTCTGTGCAGAGTACC 60.353 54.545 11.09 0.00 39.82 3.34
5930 6627 2.297315 CAGTCTTCTGTGCAGAGTACCA 59.703 50.000 11.09 0.00 38.88 3.25
6008 6705 5.353123 GGAGCACAATGAAACGGTTAGATTA 59.647 40.000 0.00 0.00 0.00 1.75
6035 6732 8.325421 TGATAGTTATAGCCTTCTTCGAGTAG 57.675 38.462 0.00 0.00 0.00 2.57
6036 6733 5.441709 AGTTATAGCCTTCTTCGAGTAGC 57.558 43.478 0.00 0.00 0.00 3.58
6037 6734 4.888239 AGTTATAGCCTTCTTCGAGTAGCA 59.112 41.667 0.00 0.00 0.00 3.49
6038 6735 5.360144 AGTTATAGCCTTCTTCGAGTAGCAA 59.640 40.000 0.00 0.00 0.00 3.91
6057 6754 3.492011 GCAAGTGCTTTTGGAAGACATTG 59.508 43.478 0.00 0.00 38.21 2.82
6058 6755 4.053295 CAAGTGCTTTTGGAAGACATTGG 58.947 43.478 0.00 0.00 34.71 3.16
6063 6760 4.278170 TGCTTTTGGAAGACATTGGTACTG 59.722 41.667 0.00 0.00 34.71 2.74
6064 6761 4.798574 CTTTTGGAAGACATTGGTACTGC 58.201 43.478 0.00 0.00 34.71 4.40
6143 6840 6.662755 TGATCATGTTCCTTTGTATAGCCTT 58.337 36.000 0.00 0.00 0.00 4.35
6181 6878 9.448438 TTTGCATAGATGTTTTCATGTACTACT 57.552 29.630 0.00 0.00 41.05 2.57
6216 6913 3.252215 TGAATTTTAGGTGTGGCGACAAG 59.748 43.478 2.03 0.00 46.06 3.16
6217 6914 2.623878 TTTTAGGTGTGGCGACAAGA 57.376 45.000 2.03 0.00 46.06 3.02
6218 6915 2.851263 TTTAGGTGTGGCGACAAGAT 57.149 45.000 2.03 0.00 46.06 2.40
6219 6916 3.965379 TTTAGGTGTGGCGACAAGATA 57.035 42.857 2.03 0.00 46.06 1.98
6220 6917 4.481368 TTTAGGTGTGGCGACAAGATAT 57.519 40.909 2.03 0.00 46.06 1.63
6221 6918 5.601583 TTTAGGTGTGGCGACAAGATATA 57.398 39.130 2.03 0.00 46.06 0.86
6222 6919 5.801531 TTAGGTGTGGCGACAAGATATAT 57.198 39.130 2.03 0.00 46.06 0.86
6223 6920 3.995199 AGGTGTGGCGACAAGATATATG 58.005 45.455 2.03 0.00 46.06 1.78
6245 6942 2.359900 TCCCTCGTAGTCGGTAACTTC 58.640 52.381 0.00 0.00 39.55 3.01
6246 6943 1.063174 CCCTCGTAGTCGGTAACTTCG 59.937 57.143 0.00 0.00 46.56 3.79
6247 6944 1.063174 CCTCGTAGTCGGTAACTTCGG 59.937 57.143 4.74 0.00 45.61 4.30
6295 6992 6.183360 CCTCTTTTATAGAAAGACGGCACTTG 60.183 42.308 0.00 0.00 33.20 3.16
6323 7020 6.588348 TGAGTGAAGACATTATATGTTGCG 57.412 37.500 0.00 0.00 45.03 4.85
6327 7024 5.523916 GTGAAGACATTATATGTTGCGTCCT 59.476 40.000 0.00 0.00 45.03 3.85
6652 7352 0.677731 TCCGACGAGGTTATCACGGT 60.678 55.000 0.00 0.00 43.49 4.83
6672 7372 0.107945 GGAGTTCTTCCGCTCTGCAT 60.108 55.000 0.00 0.00 35.91 3.96
6674 7374 0.901124 AGTTCTTCCGCTCTGCATCT 59.099 50.000 0.00 0.00 0.00 2.90
6721 7440 2.743838 GCCAAGGGGATTCGATCGTTTA 60.744 50.000 15.94 2.35 35.59 2.01
6785 7504 1.219393 GGAGTGGTCCAGCAGCTAC 59.781 63.158 0.00 0.00 43.31 3.58
6790 7509 1.740025 GTGGTCCAGCAGCTACAATTC 59.260 52.381 0.00 0.00 0.00 2.17
6815 7534 3.119388 CGTGCATTGACTTGGGATTGATT 60.119 43.478 0.00 0.00 0.00 2.57
6856 7579 0.464870 CGTCGTCCTCCTCCTCTCTA 59.535 60.000 0.00 0.00 0.00 2.43
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
316 322 3.894427 TGGCTTACTCCATTTTGCTTCAA 59.106 39.130 0.00 0.00 0.00 2.69
469 477 3.427161 TCTGTAGTGATCACATCTGCG 57.573 47.619 27.02 10.40 0.00 5.18
838 855 5.047802 TCGTCGTGGTATTTTTAGAGAAGGT 60.048 40.000 0.00 0.00 0.00 3.50
852 869 2.355197 TCCGATTTACTCGTCGTGGTA 58.645 47.619 0.00 0.00 46.18 3.25
855 872 1.576246 CGTTCCGATTTACTCGTCGTG 59.424 52.381 0.00 0.00 46.18 4.35
856 873 1.466360 CCGTTCCGATTTACTCGTCGT 60.466 52.381 0.00 0.00 46.18 4.34
858 875 2.448219 CTCCGTTCCGATTTACTCGTC 58.552 52.381 0.00 0.00 46.18 4.20
859 876 1.133790 CCTCCGTTCCGATTTACTCGT 59.866 52.381 0.00 0.00 46.18 4.18
861 878 1.753073 TCCCTCCGTTCCGATTTACTC 59.247 52.381 0.00 0.00 0.00 2.59
862 879 1.755380 CTCCCTCCGTTCCGATTTACT 59.245 52.381 0.00 0.00 0.00 2.24
863 880 1.805495 GCTCCCTCCGTTCCGATTTAC 60.805 57.143 0.00 0.00 0.00 2.01
864 881 0.462789 GCTCCCTCCGTTCCGATTTA 59.537 55.000 0.00 0.00 0.00 1.40
865 882 1.221021 GCTCCCTCCGTTCCGATTT 59.779 57.895 0.00 0.00 0.00 2.17
866 883 1.961180 CTGCTCCCTCCGTTCCGATT 61.961 60.000 0.00 0.00 0.00 3.34
867 884 2.363795 TGCTCCCTCCGTTCCGAT 60.364 61.111 0.00 0.00 0.00 4.18
868 885 2.856039 ATCTGCTCCCTCCGTTCCGA 62.856 60.000 0.00 0.00 0.00 4.55
869 886 2.427245 ATCTGCTCCCTCCGTTCCG 61.427 63.158 0.00 0.00 0.00 4.30
870 887 1.144936 CATCTGCTCCCTCCGTTCC 59.855 63.158 0.00 0.00 0.00 3.62
871 888 0.460987 CACATCTGCTCCCTCCGTTC 60.461 60.000 0.00 0.00 0.00 3.95
872 889 0.904865 TCACATCTGCTCCCTCCGTT 60.905 55.000 0.00 0.00 0.00 4.44
873 890 1.305297 TCACATCTGCTCCCTCCGT 60.305 57.895 0.00 0.00 0.00 4.69
874 891 1.326213 ACTCACATCTGCTCCCTCCG 61.326 60.000 0.00 0.00 0.00 4.63
875 892 0.908198 AACTCACATCTGCTCCCTCC 59.092 55.000 0.00 0.00 0.00 4.30
876 893 2.763448 ACTAACTCACATCTGCTCCCTC 59.237 50.000 0.00 0.00 0.00 4.30
877 894 2.826488 ACTAACTCACATCTGCTCCCT 58.174 47.619 0.00 0.00 0.00 4.20
878 895 3.618690 AACTAACTCACATCTGCTCCC 57.381 47.619 0.00 0.00 0.00 4.30
879 896 6.478344 CAGAATAACTAACTCACATCTGCTCC 59.522 42.308 0.00 0.00 0.00 4.70
880 897 7.038659 ACAGAATAACTAACTCACATCTGCTC 58.961 38.462 0.00 0.00 37.22 4.26
881 898 6.940739 ACAGAATAACTAACTCACATCTGCT 58.059 36.000 0.00 0.00 37.22 4.24
882 899 7.602517 AACAGAATAACTAACTCACATCTGC 57.397 36.000 0.00 0.00 37.22 4.26
883 900 9.208022 TGAAACAGAATAACTAACTCACATCTG 57.792 33.333 0.00 0.00 39.09 2.90
884 901 9.778741 TTGAAACAGAATAACTAACTCACATCT 57.221 29.630 0.00 0.00 0.00 2.90
891 908 9.931210 CGACTTTTTGAAACAGAATAACTAACT 57.069 29.630 0.00 0.00 0.00 2.24
892 909 9.166126 CCGACTTTTTGAAACAGAATAACTAAC 57.834 33.333 0.00 0.00 0.00 2.34
893 910 9.111613 TCCGACTTTTTGAAACAGAATAACTAA 57.888 29.630 0.00 0.00 0.00 2.24
894 911 8.665643 TCCGACTTTTTGAAACAGAATAACTA 57.334 30.769 0.00 0.00 0.00 2.24
895 912 7.562454 TCCGACTTTTTGAAACAGAATAACT 57.438 32.000 0.00 0.00 0.00 2.24
896 913 8.623310 TTTCCGACTTTTTGAAACAGAATAAC 57.377 30.769 0.00 0.00 0.00 1.89
897 914 7.918562 CCTTTCCGACTTTTTGAAACAGAATAA 59.081 33.333 0.00 0.00 0.00 1.40
898 915 7.283580 TCCTTTCCGACTTTTTGAAACAGAATA 59.716 33.333 0.00 0.00 0.00 1.75
899 916 6.096282 TCCTTTCCGACTTTTTGAAACAGAAT 59.904 34.615 0.00 0.00 0.00 2.40
900 917 5.416326 TCCTTTCCGACTTTTTGAAACAGAA 59.584 36.000 0.00 0.00 0.00 3.02
901 918 4.944930 TCCTTTCCGACTTTTTGAAACAGA 59.055 37.500 0.00 0.00 0.00 3.41
902 919 5.243426 TCCTTTCCGACTTTTTGAAACAG 57.757 39.130 0.00 0.00 0.00 3.16
903 920 5.416326 TCTTCCTTTCCGACTTTTTGAAACA 59.584 36.000 0.00 0.00 0.00 2.83
904 921 5.886992 TCTTCCTTTCCGACTTTTTGAAAC 58.113 37.500 0.00 0.00 0.00 2.78
914 931 2.265589 TGGGTTTCTTCCTTTCCGAC 57.734 50.000 0.00 0.00 0.00 4.79
925 942 0.181350 GGGAGATGCGATGGGTTTCT 59.819 55.000 0.00 0.00 0.00 2.52
960 977 0.955905 GCGGAGAGAGGACAGGATAC 59.044 60.000 0.00 0.00 0.00 2.24
1271 1290 1.134670 GCAGAGAGGTGGCGAAATACT 60.135 52.381 0.00 0.00 0.00 2.12
1272 1291 1.134670 AGCAGAGAGGTGGCGAAATAC 60.135 52.381 0.00 0.00 0.00 1.89
1273 1292 1.195115 AGCAGAGAGGTGGCGAAATA 58.805 50.000 0.00 0.00 0.00 1.40
1280 1299 2.392662 TGGAGATAAGCAGAGAGGTGG 58.607 52.381 0.00 0.00 0.00 4.61
1298 1317 0.879090 TCGTCCATCCGTCGATATGG 59.121 55.000 16.33 16.33 43.44 2.74
1300 1319 1.068472 GCTTCGTCCATCCGTCGATAT 60.068 52.381 0.00 0.00 33.72 1.63
1303 1322 2.044555 AGCTTCGTCCATCCGTCGA 61.045 57.895 0.00 0.00 0.00 4.20
1322 1341 9.201127 ACCGAGACTGAAACTAAACTAAATAAC 57.799 33.333 0.00 0.00 0.00 1.89
1325 1349 7.668492 AGACCGAGACTGAAACTAAACTAAAT 58.332 34.615 0.00 0.00 0.00 1.40
1345 1369 3.380479 TGGAACTGTTCTACAAGACCG 57.620 47.619 19.05 0.00 0.00 4.79
1346 1370 4.894784 TCATGGAACTGTTCTACAAGACC 58.105 43.478 19.05 2.43 0.00 3.85
1352 1376 6.801539 TGTCATTTCATGGAACTGTTCTAC 57.198 37.500 19.05 5.31 0.00 2.59
1373 1397 2.936498 CACAAACCACGAGAGAAGTTGT 59.064 45.455 0.00 0.00 32.07 3.32
1403 1427 1.927487 TTCCTTCGTGGCAGGTACTA 58.073 50.000 7.12 0.00 33.19 1.82
1404 1428 1.276622 ATTCCTTCGTGGCAGGTACT 58.723 50.000 7.12 0.00 33.88 2.73
1405 1429 2.973694 TATTCCTTCGTGGCAGGTAC 57.026 50.000 7.12 0.00 35.26 3.34
1406 1430 2.104111 CCATATTCCTTCGTGGCAGGTA 59.896 50.000 7.12 0.00 35.26 3.08
1407 1431 1.134098 CCATATTCCTTCGTGGCAGGT 60.134 52.381 7.12 0.00 35.26 4.00
1408 1432 1.140852 TCCATATTCCTTCGTGGCAGG 59.859 52.381 0.00 0.00 35.26 4.85
1412 1436 2.612212 CCGTTTCCATATTCCTTCGTGG 59.388 50.000 0.00 0.00 37.10 4.94
1478 1502 8.603898 TCCAACAGTAGATAATAGGTCAGAAA 57.396 34.615 0.00 0.00 0.00 2.52
1562 1620 5.413833 AGTGTGCCATCTCAATGTCTAAAAG 59.586 40.000 0.00 0.00 0.00 2.27
1580 1638 0.179045 ACACCTGTTGGAGAGTGTGC 60.179 55.000 0.00 0.00 41.69 4.57
1592 1650 7.759433 CACAAAAAGTAATTGAAAGACACCTGT 59.241 33.333 0.00 0.00 0.00 4.00
1593 1651 7.254084 GCACAAAAAGTAATTGAAAGACACCTG 60.254 37.037 0.00 0.00 0.00 4.00
1594 1652 6.756542 GCACAAAAAGTAATTGAAAGACACCT 59.243 34.615 0.00 0.00 0.00 4.00
1596 1654 7.062839 TGTGCACAAAAAGTAATTGAAAGACAC 59.937 33.333 19.28 0.00 0.00 3.67
1597 1655 7.093354 TGTGCACAAAAAGTAATTGAAAGACA 58.907 30.769 19.28 0.00 0.00 3.41
1598 1656 7.518731 TGTGCACAAAAAGTAATTGAAAGAC 57.481 32.000 19.28 0.00 0.00 3.01
1601 1659 9.539825 ACATATGTGCACAAAAAGTAATTGAAA 57.460 25.926 25.72 0.00 0.00 2.69
1702 1766 5.633182 TGTTCAGTTCGTAAATACCGGTAAC 59.367 40.000 20.22 12.23 0.00 2.50
1708 1772 7.952339 TCGTAATTGTTCAGTTCGTAAATACC 58.048 34.615 0.00 0.00 0.00 2.73
1729 1793 5.562506 ATCTCTTCAGATCGTTGTTCGTA 57.437 39.130 0.00 0.00 33.71 3.43
1756 1821 5.178623 TGCGGTCAAACTTTGAATACTACAG 59.821 40.000 5.76 0.00 42.15 2.74
1757 1822 5.057819 TGCGGTCAAACTTTGAATACTACA 58.942 37.500 5.76 0.00 42.15 2.74
1758 1823 5.600908 TGCGGTCAAACTTTGAATACTAC 57.399 39.130 5.76 0.00 42.15 2.73
1777 1844 6.408858 ACATGACTTACTAGAAAACATGCG 57.591 37.500 0.00 0.00 37.66 4.73
1840 1908 9.995003 AGTTAAAATGTGCCAATTCATCTAAAA 57.005 25.926 0.00 0.00 0.00 1.52
1866 1934 3.257873 ACATTGAAATGGGCAATCGAACA 59.742 39.130 7.87 0.00 40.70 3.18
1874 1942 5.923204 ACAAAGTTAACATTGAAATGGGCA 58.077 33.333 25.69 0.00 40.70 5.36
1875 1943 5.988561 TGACAAAGTTAACATTGAAATGGGC 59.011 36.000 25.69 3.36 40.70 5.36
1876 1944 7.871973 TGATGACAAAGTTAACATTGAAATGGG 59.128 33.333 25.69 2.58 40.70 4.00
1883 1951 9.844790 ACACATATGATGACAAAGTTAACATTG 57.155 29.630 19.21 19.21 0.00 2.82
1892 1962 8.667463 TGTGACATAACACATATGATGACAAAG 58.333 33.333 10.38 0.00 44.29 2.77
1915 1985 5.621197 TTGAGTCCGATTAACCAAATGTG 57.379 39.130 0.00 0.00 0.00 3.21
1992 2062 5.989477 TGAGATAAATCCGAGTCACCATTT 58.011 37.500 0.00 0.00 0.00 2.32
2091 2161 6.537301 ACACCACCAATATACATAAACGACAG 59.463 38.462 0.00 0.00 0.00 3.51
2095 2165 7.079182 ACAACACCACCAATATACATAAACG 57.921 36.000 0.00 0.00 0.00 3.60
2256 2326 3.136077 CCTCATCATCACCATCCTTCTGT 59.864 47.826 0.00 0.00 0.00 3.41
2317 2387 4.970711 AGAAGATAGATGCAGGTCAATGG 58.029 43.478 0.00 0.00 0.00 3.16
2338 2408 6.606234 CTCTGATGGAATGTTCATTCAGAG 57.394 41.667 24.17 24.17 46.38 3.35
2355 2425 8.568794 CATTTGTGATGCTAAATGATCTCTGAT 58.431 33.333 0.00 0.00 43.51 2.90
2383 2453 1.129251 CTAGAGCACACGCCACATTTG 59.871 52.381 0.00 0.00 39.83 2.32
2386 2456 0.390340 CACTAGAGCACACGCCACAT 60.390 55.000 0.00 0.00 39.83 3.21
2388 2458 1.738099 CCACTAGAGCACACGCCAC 60.738 63.158 0.00 0.00 39.83 5.01
2391 2461 0.951040 AAAGCCACTAGAGCACACGC 60.951 55.000 11.21 0.00 38.99 5.34
2392 2462 0.792640 CAAAGCCACTAGAGCACACG 59.207 55.000 11.21 0.00 0.00 4.49
2452 2522 8.114331 TCCATTGCATAATCATAATTGGAGAC 57.886 34.615 0.00 0.00 0.00 3.36
2468 2538 4.924305 AACGCTTTATCATCCATTGCAT 57.076 36.364 0.00 0.00 0.00 3.96
2474 2544 4.839121 ACAGGTTAACGCTTTATCATCCA 58.161 39.130 0.00 0.00 0.00 3.41
2475 2545 6.482308 ACATACAGGTTAACGCTTTATCATCC 59.518 38.462 0.00 0.00 0.00 3.51
2487 2557 9.595823 AACATGAGTACATACATACAGGTTAAC 57.404 33.333 0.00 0.00 33.40 2.01
2518 2720 6.247903 ACATGTTAAACGATGTTAATGAGCG 58.752 36.000 0.00 0.00 27.94 5.03
2620 2822 0.689055 AGACCAGCAAGCATGTCTCA 59.311 50.000 9.71 0.00 32.85 3.27
2654 2857 6.527722 CGGTCAATTGGAAATGAGTAACATTG 59.472 38.462 5.42 0.00 46.90 2.82
2677 2880 1.052124 TACCCAGATAAGGCCCACGG 61.052 60.000 0.00 0.00 0.00 4.94
2716 2919 5.260424 TGTAGCAAAGCATTTTCAGGGATA 58.740 37.500 0.00 0.00 35.03 2.59
2737 2940 3.190535 GCAACCCGTCTACATCAAATTGT 59.809 43.478 0.00 0.00 0.00 2.71
2756 2959 6.071221 AGTGCCTCAAAATATCTTTCATGCAA 60.071 34.615 0.00 0.00 0.00 4.08
2758 2961 5.747197 CAGTGCCTCAAAATATCTTTCATGC 59.253 40.000 0.00 0.00 0.00 4.06
2772 2975 2.616256 CCAGCTGATAACAGTGCCTCAA 60.616 50.000 17.39 0.00 45.04 3.02
2850 3061 4.213513 ACCGGTATGTAAGGGAAGTAGAG 58.786 47.826 4.49 0.00 0.00 2.43
2870 3081 3.057806 AGTTACGCTGCCATTGTAAAACC 60.058 43.478 0.00 0.00 30.57 3.27
3005 3216 7.908082 TGCGTAAATATGCATAGAGAAACAAAC 59.092 33.333 12.79 0.17 42.78 2.93
3009 3220 8.499162 AGATTGCGTAAATATGCATAGAGAAAC 58.501 33.333 12.79 5.23 46.46 2.78
3015 3226 6.089417 TCGTCAGATTGCGTAAATATGCATAG 59.911 38.462 12.79 0.00 46.46 2.23
3031 3242 1.515088 CGCGCAGACTCGTCAGATT 60.515 57.895 8.75 0.00 0.00 2.40
3032 3243 2.101185 CGCGCAGACTCGTCAGAT 59.899 61.111 8.75 0.00 0.00 2.90
3146 3357 7.504403 TCAGGCCTTTATCATTTTCAAAAACA 58.496 30.769 0.00 0.00 0.00 2.83
3290 3501 4.639135 AAAAATGGCCGAGAATCTAAGC 57.361 40.909 0.00 0.00 0.00 3.09
3336 3547 1.267806 CTGCAAGCCAACACTACTTGG 59.732 52.381 0.00 0.00 43.36 3.61
3404 3615 6.090763 TGTTCATTTCAGACATGTAACTAGCG 59.909 38.462 0.00 0.00 0.00 4.26
3488 3702 6.767902 GGAATGATCTGCACTAATCCAGTTAA 59.232 38.462 0.00 0.00 34.26 2.01
3523 3744 8.902540 ACACACATTTAAGAACAGTTATGAGA 57.097 30.769 0.80 0.00 0.00 3.27
3542 3763 6.094742 TGCATTCAGAAAGAAAACTACACACA 59.905 34.615 0.00 0.00 40.22 3.72
3570 3791 2.945668 GCTATTACCCAGGAAGCAGTTG 59.054 50.000 0.00 0.00 33.38 3.16
3626 3856 7.693969 AAGAGAAGTTGCAATAAAGCTGTAT 57.306 32.000 0.59 0.00 34.99 2.29
3688 3918 7.665559 AGTTGAATAAATCCAAGTGCAGAACTA 59.334 33.333 0.00 0.00 38.56 2.24
3725 3956 6.919662 GCCCTAATACAAATGTCATTCACATG 59.080 38.462 0.00 0.00 45.77 3.21
3743 3974 1.286248 AAAGTCCGTCAGGCCCTAAT 58.714 50.000 0.00 0.00 37.47 1.73
3768 4007 2.289547 CGCAGAGGACGGAAAAGAAAAA 59.710 45.455 0.00 0.00 0.00 1.94
3770 4009 1.202604 ACGCAGAGGACGGAAAAGAAA 60.203 47.619 0.00 0.00 34.00 2.52
3772 4011 0.038526 GACGCAGAGGACGGAAAAGA 60.039 55.000 0.00 0.00 34.00 2.52
3773 4012 1.344942 CGACGCAGAGGACGGAAAAG 61.345 60.000 0.00 0.00 34.00 2.27
3774 4013 1.372499 CGACGCAGAGGACGGAAAA 60.372 57.895 0.00 0.00 34.00 2.29
3775 4014 1.592400 ATCGACGCAGAGGACGGAAA 61.592 55.000 0.00 0.00 34.00 3.13
3776 4015 2.044555 ATCGACGCAGAGGACGGAA 61.045 57.895 0.00 0.00 34.00 4.30
3777 4016 2.437895 ATCGACGCAGAGGACGGA 60.438 61.111 0.00 0.00 34.00 4.69
3778 4017 2.064723 ATCATCGACGCAGAGGACGG 62.065 60.000 0.00 0.00 33.59 4.79
3779 4018 0.932123 CATCATCGACGCAGAGGACG 60.932 60.000 0.00 0.00 33.59 4.79
3780 4019 0.382158 TCATCATCGACGCAGAGGAC 59.618 55.000 0.00 0.00 33.59 3.85
3782 4021 0.318529 CCTCATCATCGACGCAGAGG 60.319 60.000 10.31 10.31 36.98 3.69
3783 4022 0.665298 TCCTCATCATCGACGCAGAG 59.335 55.000 0.00 0.00 0.00 3.35
3784 4023 1.102978 TTCCTCATCATCGACGCAGA 58.897 50.000 0.00 0.00 0.00 4.26
3785 4024 1.202348 AGTTCCTCATCATCGACGCAG 60.202 52.381 0.00 0.00 0.00 5.18
3786 4025 0.817654 AGTTCCTCATCATCGACGCA 59.182 50.000 0.00 0.00 0.00 5.24
3787 4026 1.927895 AAGTTCCTCATCATCGACGC 58.072 50.000 0.00 0.00 0.00 5.19
3789 4028 5.694006 CCATCTAAAGTTCCTCATCATCGAC 59.306 44.000 0.00 0.00 0.00 4.20
3790 4029 5.363868 ACCATCTAAAGTTCCTCATCATCGA 59.636 40.000 0.00 0.00 0.00 3.59
3791 4030 5.605534 ACCATCTAAAGTTCCTCATCATCG 58.394 41.667 0.00 0.00 0.00 3.84
3793 4032 7.890127 TCAAAACCATCTAAAGTTCCTCATCAT 59.110 33.333 0.00 0.00 0.00 2.45
3858 4105 3.080300 ACAGGTCAAAAGTTGGACACA 57.920 42.857 9.41 0.00 35.74 3.72
3925 4172 3.812053 GGCTCAATGTCATGTCCTGATAC 59.188 47.826 0.00 0.00 35.97 2.24
3932 4179 1.741706 CCAGTGGCTCAATGTCATGTC 59.258 52.381 0.00 0.00 30.58 3.06
3934 4181 0.454600 GCCAGTGGCTCAATGTCATG 59.545 55.000 27.48 0.00 46.69 3.07
3989 4236 5.119588 CCAAAATGTCAGCTTTGCTAACATG 59.880 40.000 8.86 0.00 45.64 3.21
4017 4264 1.935873 CATGGCAGTGGTTCATACTCG 59.064 52.381 0.00 0.00 0.00 4.18
4087 4335 4.347000 ACAACCTAGAACTCTGCCACTTTA 59.653 41.667 0.00 0.00 0.00 1.85
4108 4356 1.535028 GACCATGATGCAAACACGACA 59.465 47.619 0.00 0.00 0.00 4.35
4109 4357 1.806542 AGACCATGATGCAAACACGAC 59.193 47.619 0.00 0.00 0.00 4.34
4111 4359 2.485426 AGAAGACCATGATGCAAACACG 59.515 45.455 0.00 0.00 0.00 4.49
4168 4770 9.681062 TTTGAGGGGAGTGAATAATACTAAAAG 57.319 33.333 0.00 0.00 0.00 2.27
4178 4780 6.884472 TTATCTGTTTGAGGGGAGTGAATA 57.116 37.500 0.00 0.00 0.00 1.75
4259 4861 7.065085 CAGACATAGTTTAGTCATTTGTGAGGG 59.935 40.741 0.00 0.00 37.23 4.30
4280 4882 6.447162 CAGAATACACACTAGTTCACAGACA 58.553 40.000 0.00 0.00 0.00 3.41
4309 4911 2.534019 CCATGCGCCGTGTGTATCC 61.534 63.158 4.18 0.00 0.00 2.59
4340 4942 7.755591 AGTTCACAATGCTAGTGTTGATAATG 58.244 34.615 13.78 4.58 38.16 1.90
4431 5062 3.960102 AGGCTTTTCTTGTTCACCATCAA 59.040 39.130 0.00 0.00 0.00 2.57
4455 5086 6.584488 TGGAATTCTAAATGGCATTTGGATG 58.416 36.000 31.11 19.50 39.10 3.51
4456 5087 6.384886 ACTGGAATTCTAAATGGCATTTGGAT 59.615 34.615 31.11 21.30 39.10 3.41
4616 5264 5.042593 TGTCTGCTAGTGTTGCAAAATTTG 58.957 37.500 0.00 0.57 40.13 2.32
4622 5270 5.704978 TGAATTATGTCTGCTAGTGTTGCAA 59.295 36.000 0.00 0.00 40.13 4.08
4625 5273 6.974932 AGTGAATTATGTCTGCTAGTGTTG 57.025 37.500 0.00 0.00 0.00 3.33
4630 5278 7.484140 TGTGTCTAGTGAATTATGTCTGCTAG 58.516 38.462 0.00 0.00 0.00 3.42
4633 5281 7.545362 AATGTGTCTAGTGAATTATGTCTGC 57.455 36.000 0.00 0.00 0.00 4.26
4748 5399 8.877864 AGATTGGGAAACTATTTGTTGACATA 57.122 30.769 0.00 0.00 39.13 2.29
4793 5444 2.397549 GTTTCCATTGACTGCAGCAAC 58.602 47.619 20.74 11.28 0.00 4.17
4959 5610 4.264253 TGTTATTTCAGGAGTCCAGCATG 58.736 43.478 12.86 0.26 0.00 4.06
4963 5614 6.037610 GCAACTATGTTATTTCAGGAGTCCAG 59.962 42.308 12.86 2.95 0.00 3.86
4993 5644 4.159693 TCTGCCACTACACATGGTACTAAG 59.840 45.833 0.00 0.00 39.63 2.18
4997 5648 2.233922 AGTCTGCCACTACACATGGTAC 59.766 50.000 0.00 0.00 39.63 3.34
5043 5694 1.001406 ACAGAGCAGCTCTTACACCAC 59.999 52.381 23.18 0.00 38.99 4.16
5073 5724 3.941483 CACCAGTATTGTTCATGAGGGTC 59.059 47.826 0.00 0.00 0.00 4.46
5075 5726 4.220693 TCACCAGTATTGTTCATGAGGG 57.779 45.455 0.00 0.00 0.00 4.30
5084 5748 4.431416 TTCACCTGTTCACCAGTATTGT 57.569 40.909 0.00 0.00 39.74 2.71
5085 5749 5.964958 AATTCACCTGTTCACCAGTATTG 57.035 39.130 0.00 0.00 39.74 1.90
5086 5750 6.306987 AGAAATTCACCTGTTCACCAGTATT 58.693 36.000 0.00 0.00 39.74 1.89
5087 5751 5.880901 AGAAATTCACCTGTTCACCAGTAT 58.119 37.500 0.00 0.00 39.74 2.12
5088 5752 5.304686 AGAAATTCACCTGTTCACCAGTA 57.695 39.130 0.00 0.00 39.74 2.74
5089 5753 4.170468 AGAAATTCACCTGTTCACCAGT 57.830 40.909 0.00 0.00 39.74 4.00
5090 5754 4.580167 TCAAGAAATTCACCTGTTCACCAG 59.420 41.667 0.00 0.00 41.15 4.00
5091 5755 4.531854 TCAAGAAATTCACCTGTTCACCA 58.468 39.130 0.00 0.00 0.00 4.17
5092 5756 4.557496 GCTCAAGAAATTCACCTGTTCACC 60.557 45.833 0.00 0.00 0.00 4.02
5093 5757 4.036734 TGCTCAAGAAATTCACCTGTTCAC 59.963 41.667 0.00 0.00 0.00 3.18
5094 5758 4.206375 TGCTCAAGAAATTCACCTGTTCA 58.794 39.130 0.00 0.00 0.00 3.18
5095 5759 4.836125 TGCTCAAGAAATTCACCTGTTC 57.164 40.909 0.00 0.00 0.00 3.18
5096 5760 5.127682 AGTTTGCTCAAGAAATTCACCTGTT 59.872 36.000 0.00 0.00 0.00 3.16
5124 5788 2.108075 TGATTTCCCTGGTTTGAGAGCA 59.892 45.455 0.00 0.00 0.00 4.26
5143 5807 4.347607 TCACTGATCATCTTCTCCACTGA 58.652 43.478 0.00 0.00 0.00 3.41
5193 5857 3.811722 TTTGTGCTTTCAGTGCTATCG 57.188 42.857 0.00 0.00 0.00 2.92
5198 5862 1.790623 CAGCATTTGTGCTTTCAGTGC 59.209 47.619 0.00 0.00 43.52 4.40
5215 5879 1.815003 CAGGTCAGAATTTGGTCCAGC 59.185 52.381 0.00 0.00 0.00 4.85
5217 5881 2.061848 TCCAGGTCAGAATTTGGTCCA 58.938 47.619 0.00 0.00 32.51 4.02
5319 5984 4.913924 GTCAACAACAGTCTGATTCAATGC 59.086 41.667 6.91 0.00 0.00 3.56
5327 5992 1.134220 GTGGGGTCAACAACAGTCTGA 60.134 52.381 6.91 0.00 0.00 3.27
5343 6008 7.835822 TCCTAATGTTCATGTAAAAATGTGGG 58.164 34.615 0.00 0.00 0.00 4.61
5350 6015 9.770097 TTGCATTTTCCTAATGTTCATGTAAAA 57.230 25.926 0.00 0.00 0.00 1.52
5453 6118 8.404765 TGCGCTCATTTCAAAGAAAATATATGA 58.595 29.630 9.73 0.00 0.00 2.15
5493 6158 9.783256 GAAGTTGAATTACCACAATGTAATACC 57.217 33.333 0.00 0.00 39.81 2.73
5639 6316 4.864704 TTATTTTTCCAGACAAGGGTGC 57.135 40.909 0.00 0.00 0.00 5.01
5802 6481 6.590677 GGAGAAAATATCCCGATAGCTTGTAC 59.409 42.308 0.00 0.00 0.00 2.90
5838 6517 3.708563 TTTTGCAGCCAAGTAACTCAC 57.291 42.857 0.00 0.00 31.52 3.51
5864 6560 0.395312 TCCTGTCACCGTTTCTTCCC 59.605 55.000 0.00 0.00 0.00 3.97
5919 6616 5.359756 GTGATGATACAATGGTACTCTGCA 58.640 41.667 0.00 0.00 30.94 4.41
5921 6618 5.460091 CACGTGATGATACAATGGTACTCTG 59.540 44.000 10.90 0.00 30.94 3.35
5924 6621 4.119862 GCACGTGATGATACAATGGTACT 58.880 43.478 22.23 0.00 30.94 2.73
5929 6626 3.302028 CGTCTGCACGTGATGATACAATG 60.302 47.826 22.23 0.00 41.42 2.82
5930 6627 2.860136 CGTCTGCACGTGATGATACAAT 59.140 45.455 22.23 0.00 41.42 2.71
6008 6705 8.184304 ACTCGAAGAAGGCTATAACTATCATT 57.816 34.615 0.00 0.00 34.09 2.57
6035 6732 2.869233 TGTCTTCCAAAAGCACTTGC 57.131 45.000 0.00 0.00 42.49 4.01
6036 6733 4.053295 CCAATGTCTTCCAAAAGCACTTG 58.947 43.478 0.00 0.00 32.18 3.16
6037 6734 3.706086 ACCAATGTCTTCCAAAAGCACTT 59.294 39.130 0.00 0.00 32.18 3.16
6038 6735 3.299503 ACCAATGTCTTCCAAAAGCACT 58.700 40.909 0.00 0.00 32.18 4.40
6073 6770 4.335416 CAGAATCCTAGCTTCCAAAACCA 58.665 43.478 0.00 0.00 0.00 3.67
6143 6840 9.979578 AAACATCTATGCAAATCAAAGTTACAA 57.020 25.926 0.00 0.00 0.00 2.41
6181 6878 9.787435 ACACCTAAAATTCACTCTAACAACATA 57.213 29.630 0.00 0.00 0.00 2.29
6182 6879 8.567948 CACACCTAAAATTCACTCTAACAACAT 58.432 33.333 0.00 0.00 0.00 2.71
6193 6890 2.550606 TGTCGCCACACCTAAAATTCAC 59.449 45.455 0.00 0.00 0.00 3.18
6199 6896 2.851263 ATCTTGTCGCCACACCTAAA 57.149 45.000 0.00 0.00 29.76 1.85
6216 6913 4.699257 ACCGACTACGAGGGAACATATATC 59.301 45.833 0.00 0.00 42.66 1.63
6217 6914 4.660168 ACCGACTACGAGGGAACATATAT 58.340 43.478 0.00 0.00 42.66 0.86
6218 6915 4.090761 ACCGACTACGAGGGAACATATA 57.909 45.455 0.00 0.00 42.66 0.86
6219 6916 2.941480 ACCGACTACGAGGGAACATAT 58.059 47.619 0.00 0.00 42.66 1.78
6220 6917 2.425143 ACCGACTACGAGGGAACATA 57.575 50.000 0.00 0.00 42.66 2.29
6221 6918 2.425143 TACCGACTACGAGGGAACAT 57.575 50.000 0.00 0.00 42.66 2.71
6222 6919 2.198827 TTACCGACTACGAGGGAACA 57.801 50.000 0.00 0.00 42.66 3.18
6223 6920 2.551355 GTTACCGACTACGAGGGAAC 57.449 55.000 0.00 0.00 43.30 3.62
6322 7019 1.607628 CGGAGTTGGACCTATAGGACG 59.392 57.143 26.01 11.40 38.94 4.79
6323 7020 1.962100 CCGGAGTTGGACCTATAGGAC 59.038 57.143 26.01 18.86 38.94 3.85
6327 7024 1.111116 CGCCCGGAGTTGGACCTATA 61.111 60.000 0.73 0.00 0.00 1.31
6652 7352 1.293498 GCAGAGCGGAAGAACTCCA 59.707 57.895 0.00 0.00 45.74 3.86
6685 7385 0.383949 TTGGCTTGTTCAGAAACCGC 59.616 50.000 0.00 0.00 34.28 5.68
6686 7386 1.001378 CCTTGGCTTGTTCAGAAACCG 60.001 52.381 0.00 0.00 34.28 4.44
6687 7387 1.341209 CCCTTGGCTTGTTCAGAAACC 59.659 52.381 0.00 0.00 34.28 3.27
6721 7440 2.223066 CGAGCGTCTCTGAATTCGTACT 60.223 50.000 0.04 0.00 0.00 2.73
6785 7504 0.168788 AGTCAATGCACGCCGAATTG 59.831 50.000 0.00 0.00 33.50 2.32
6790 7509 2.176546 CCAAGTCAATGCACGCCG 59.823 61.111 0.00 0.00 0.00 6.46
6856 7579 4.560856 GAGCTCAGCGCCGACGAT 62.561 66.667 9.40 0.00 43.93 3.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.