Multiple sequence alignment - TraesCS5D01G074400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G074400 chr5D 100.000 7818 0 0 1 7818 73511482 73503665 0.000000e+00 14438.0
1 TraesCS5D01G074400 chr5D 77.654 537 82 24 7305 7817 421840892 421840370 7.670000e-75 292.0
2 TraesCS5D01G074400 chr5A 94.264 7043 255 59 859 7818 68622967 68615991 0.000000e+00 10630.0
3 TraesCS5D01G074400 chr5A 85.381 472 52 11 3 461 68623435 68622968 2.550000e-129 473.0
4 TraesCS5D01G074400 chr5A 79.276 497 75 21 7305 7791 535354579 535354101 9.790000e-84 322.0
5 TraesCS5D01G074400 chr5A 85.143 175 15 7 6726 6895 478994868 478994700 1.350000e-37 169.0
6 TraesCS5D01G074400 chr5B 95.278 6120 191 36 859 6926 78961099 78967172 0.000000e+00 9611.0
7 TraesCS5D01G074400 chr5B 92.964 469 25 7 1 464 78960625 78961090 0.000000e+00 676.0
8 TraesCS5D01G074400 chr5B 81.448 221 35 6 7305 7522 340999805 341000022 8.060000e-40 176.0
9 TraesCS5D01G074400 chr7D 94.859 389 17 3 474 859 45011233 45010845 8.680000e-169 604.0
10 TraesCS5D01G074400 chr7D 94.872 390 13 6 474 860 136187700 136187315 3.120000e-168 603.0
11 TraesCS5D01G074400 chr7D 76.067 539 95 23 7298 7818 100874752 100874230 4.680000e-62 250.0
12 TraesCS5D01G074400 chr7D 86.471 170 12 7 6726 6890 573395804 573395641 8.060000e-40 176.0
13 TraesCS5D01G074400 chr7D 85.915 142 19 1 7323 7464 384986593 384986733 4.890000e-32 150.0
14 TraesCS5D01G074400 chr1A 94.859 389 17 3 474 859 522235572 522235184 8.680000e-169 604.0
15 TraesCS5D01G074400 chr1A 77.592 299 58 6 7524 7818 582526811 582527104 1.040000e-38 172.0
16 TraesCS5D01G074400 chr1A 80.374 214 38 4 7308 7518 257984719 257984507 8.120000e-35 159.0
17 TraesCS5D01G074400 chr3A 93.250 400 22 3 464 859 55228130 55227732 1.130000e-162 584.0
18 TraesCS5D01G074400 chr6B 93.846 390 19 4 474 859 37648156 37647768 4.070000e-162 582.0
19 TraesCS5D01G074400 chr6B 79.070 516 78 16 7302 7791 527360733 527361244 2.100000e-85 327.0
20 TraesCS5D01G074400 chr6B 85.143 175 15 7 6726 6895 604748092 604747924 1.350000e-37 169.0
21 TraesCS5D01G074400 chr3D 93.846 390 18 4 474 859 607570601 607570988 4.070000e-162 582.0
22 TraesCS5D01G074400 chr3D 93.418 395 19 5 470 859 33135340 33134948 5.260000e-161 579.0
23 TraesCS5D01G074400 chr7A 93.622 392 18 4 474 859 32757860 32757470 5.260000e-161 579.0
24 TraesCS5D01G074400 chr3B 92.893 394 22 5 474 861 554099178 554099571 1.140000e-157 568.0
25 TraesCS5D01G074400 chr3B 78.000 250 44 6 7524 7764 149273903 149274150 6.320000e-31 147.0
26 TraesCS5D01G074400 chr1D 81.076 539 73 15 7304 7818 387891033 387891566 3.400000e-108 403.0
27 TraesCS5D01G074400 chr1D 76.291 426 76 16 7411 7818 485236643 485237061 3.700000e-48 204.0
28 TraesCS5D01G074400 chr1D 81.308 214 37 3 7308 7518 203459247 203459034 3.750000e-38 171.0
29 TraesCS5D01G074400 chr6D 79.762 504 66 15 7339 7817 127468534 127469026 4.520000e-87 333.0
30 TraesCS5D01G074400 chr6D 77.121 389 58 15 7459 7818 372884936 372885322 6.190000e-46 196.0
31 TraesCS5D01G074400 chr7B 92.788 208 9 4 5179 5381 736630919 736631125 5.930000e-76 296.0
32 TraesCS5D01G074400 chr7B 92.308 208 10 4 5179 5381 737098558 737098352 2.760000e-74 291.0
33 TraesCS5D01G074400 chr7B 92.308 208 10 4 5179 5381 737399194 737398988 2.760000e-74 291.0
34 TraesCS5D01G074400 chr7B 91.827 208 11 4 5179 5381 738098409 738098203 1.280000e-72 285.0
35 TraesCS5D01G074400 chr7B 76.971 482 82 18 7353 7818 467075602 467075134 1.680000e-61 248.0
36 TraesCS5D01G074400 chr1B 78.646 384 67 11 7436 7818 39077051 39077420 2.820000e-59 241.0
37 TraesCS5D01G074400 chr1B 77.880 217 44 4 7308 7521 484716438 484716653 1.770000e-26 132.0
38 TraesCS5D01G074400 chr2B 80.795 302 43 9 7529 7818 673598059 673597761 1.020000e-53 222.0
39 TraesCS5D01G074400 chr2B 79.439 214 38 5 7294 7504 413035262 413035472 6.320000e-31 147.0
40 TraesCS5D01G074400 chr2B 100.000 28 0 0 7294 7321 531099822 531099795 1.400000e-02 52.8
41 TraesCS5D01G074400 chrUn 85.143 175 15 7 6726 6895 332173808 332173640 1.350000e-37 169.0
42 TraesCS5D01G074400 chr6A 85.143 175 15 7 6726 6895 410562126 410561958 1.350000e-37 169.0
43 TraesCS5D01G074400 chr6A 85.465 172 14 7 6726 6892 580328914 580329079 1.350000e-37 169.0
44 TraesCS5D01G074400 chr6A 76.852 108 20 2 7090 7197 159938543 159938645 1.000000e-03 56.5
45 TraesCS5D01G074400 chr4A 85.143 175 15 7 6726 6895 740821073 740820905 1.350000e-37 169.0
46 TraesCS5D01G074400 chr2D 82.036 167 29 1 7652 7818 384058415 384058580 2.940000e-29 141.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G074400 chr5D 73503665 73511482 7817 True 14438.0 14438 100.0000 1 7818 1 chr5D.!!$R1 7817
1 TraesCS5D01G074400 chr5D 421840370 421840892 522 True 292.0 292 77.6540 7305 7817 1 chr5D.!!$R2 512
2 TraesCS5D01G074400 chr5A 68615991 68623435 7444 True 5551.5 10630 89.8225 3 7818 2 chr5A.!!$R3 7815
3 TraesCS5D01G074400 chr5B 78960625 78967172 6547 False 5143.5 9611 94.1210 1 6926 2 chr5B.!!$F2 6925
4 TraesCS5D01G074400 chr7D 100874230 100874752 522 True 250.0 250 76.0670 7298 7818 1 chr7D.!!$R2 520
5 TraesCS5D01G074400 chr6B 527360733 527361244 511 False 327.0 327 79.0700 7302 7791 1 chr6B.!!$F1 489
6 TraesCS5D01G074400 chr1D 387891033 387891566 533 False 403.0 403 81.0760 7304 7818 1 chr1D.!!$F1 514

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
497 516 0.107654 GGCTAATCTGCACCCGAACT 60.108 55.000 0.00 0.0 34.04 3.01 F
631 650 0.107703 CATTCCTAGAAGGCGTGGCA 60.108 55.000 0.00 0.0 34.61 4.92 F
633 652 0.398696 TTCCTAGAAGGCGTGGCAAA 59.601 50.000 0.00 0.0 34.61 3.68 F
1802 1894 0.610687 GCAACTAGCTCCAGTCCTGT 59.389 55.000 0.00 0.0 41.15 4.00 F
2017 2112 0.039978 CGGCAAATTTGGTGCGTACA 60.040 50.000 19.47 0.0 43.18 2.90 F
2314 2409 1.579698 CTGATGAGGACCTTGATGCG 58.420 55.000 0.00 0.0 0.00 4.73 F
3507 3602 1.227853 AGAACAGTGCCGGTCCAAC 60.228 57.895 1.90 0.0 0.00 3.77 F
3931 4026 1.025113 GTTTGGCTACCTCTTCGCCC 61.025 60.000 0.00 0.0 43.12 6.13 F
4840 4944 1.451449 ACCAACCATACCTCCAACCA 58.549 50.000 0.00 0.0 0.00 3.67 F
5303 5409 0.180406 GGAGGGAGGCGCAAATTCTA 59.820 55.000 10.83 0.0 0.00 2.10 F
5895 6001 0.519077 GTAGCAGCAGCAAAGTGTCC 59.481 55.000 3.17 0.0 45.49 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1787 1879 0.175302 CAGCACAGGACTGGAGCTAG 59.825 60.000 17.17 10.53 41.72 3.42 R
1937 2032 0.609131 CCGGAGTCAAACCTGCCAAT 60.609 55.000 0.00 0.00 0.00 3.16 R
1965 2060 1.452145 TTTCAGAGGCAAACCGGCAC 61.452 55.000 0.00 0.00 44.47 5.01 R
2888 2983 1.133823 TCCAACACCTGTGTCTGCATT 60.134 47.619 2.98 0.00 44.13 3.56 R
3507 3602 2.113774 TGCACTGGGGAGCAACAG 59.886 61.111 0.00 0.00 36.21 3.16 R
3836 3931 3.056322 GCTCCATTTGCCACTGATCTTTT 60.056 43.478 0.00 0.00 0.00 2.27 R
5117 5221 0.100503 GCTTCACGTGCACAAACCTT 59.899 50.000 18.64 0.00 0.00 3.50 R
5279 5385 0.757188 TTTGCGCCTCCCTCCAAAAA 60.757 50.000 4.18 0.00 0.00 1.94 R
6329 6437 0.106149 GTGAACGAGGGGCGGATATT 59.894 55.000 0.00 0.00 46.49 1.28 R
6381 6489 0.401356 TGCCCTTGACTGAAGCATCA 59.599 50.000 0.00 0.00 0.00 3.07 R
7214 7330 0.613012 AAGAGCTGGCCATCCAAACC 60.613 55.000 5.51 0.00 42.91 3.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 2.891580 GGCTGGTTCCTCGAGTGATATA 59.108 50.000 12.31 0.00 0.00 0.86
119 120 4.281435 GTGTAATCTAGGACCCTCTTAGCC 59.719 50.000 0.00 0.00 0.00 3.93
121 122 1.219773 TCTAGGACCCTCTTAGCCGA 58.780 55.000 0.00 0.00 0.00 5.54
162 163 2.161609 AGTGGCATTTCGAACGATTTCC 59.838 45.455 0.00 0.00 0.00 3.13
209 213 9.643693 GGAATGACAACTTCAAAACAATATGAT 57.356 29.630 0.00 0.00 37.92 2.45
294 299 5.738619 AAAACTGACAGGAAAAGGTGTTT 57.261 34.783 7.51 0.00 0.00 2.83
306 311 0.178953 AGGTGTTTGCTTGCCATCCT 60.179 50.000 0.00 0.00 0.00 3.24
317 322 1.203441 TGCCATCCTCCTCACAGCTT 61.203 55.000 0.00 0.00 0.00 3.74
337 342 4.782195 GCTTACGTTCGCCAGATAACATTG 60.782 45.833 0.00 0.00 0.00 2.82
365 370 8.027771 CGTAATTCTAAGGGGTCATACATAGTC 58.972 40.741 0.00 0.00 0.00 2.59
460 479 8.556213 ACAATAGACGCATTTCTTAACCTTAA 57.444 30.769 0.00 0.00 0.00 1.85
477 496 7.598189 AACCTTAATTAAAGAGAAGAGACGC 57.402 36.000 0.76 0.00 37.38 5.19
478 497 5.805994 ACCTTAATTAAAGAGAAGAGACGCG 59.194 40.000 3.53 3.53 37.38 6.01
479 498 5.232414 CCTTAATTAAAGAGAAGAGACGCGG 59.768 44.000 12.47 0.00 37.38 6.46
480 499 1.992170 TTAAAGAGAAGAGACGCGGC 58.008 50.000 12.47 7.86 0.00 6.53
481 500 1.174783 TAAAGAGAAGAGACGCGGCT 58.825 50.000 18.34 18.34 0.00 5.52
482 501 1.174783 AAAGAGAAGAGACGCGGCTA 58.825 50.000 18.29 0.00 0.00 3.93
483 502 1.174783 AAGAGAAGAGACGCGGCTAA 58.825 50.000 18.29 0.00 0.00 3.09
484 503 1.394618 AGAGAAGAGACGCGGCTAAT 58.605 50.000 18.29 6.56 0.00 1.73
485 504 1.335496 AGAGAAGAGACGCGGCTAATC 59.665 52.381 18.29 17.21 0.00 1.75
486 505 1.335496 GAGAAGAGACGCGGCTAATCT 59.665 52.381 24.53 24.53 0.00 2.40
487 506 1.066303 AGAAGAGACGCGGCTAATCTG 59.934 52.381 23.88 0.00 0.00 2.90
488 507 0.528684 AAGAGACGCGGCTAATCTGC 60.529 55.000 18.29 0.00 43.66 4.26
493 512 3.272334 GCGGCTAATCTGCACCCG 61.272 66.667 0.00 0.00 46.35 5.28
494 513 2.499205 CGGCTAATCTGCACCCGA 59.501 61.111 0.00 0.00 41.34 5.14
495 514 1.153449 CGGCTAATCTGCACCCGAA 60.153 57.895 0.00 0.00 41.34 4.30
496 515 1.429148 CGGCTAATCTGCACCCGAAC 61.429 60.000 0.00 0.00 41.34 3.95
497 516 0.107654 GGCTAATCTGCACCCGAACT 60.108 55.000 0.00 0.00 34.04 3.01
498 517 1.291132 GCTAATCTGCACCCGAACTC 58.709 55.000 0.00 0.00 0.00 3.01
499 518 1.405526 GCTAATCTGCACCCGAACTCA 60.406 52.381 0.00 0.00 0.00 3.41
500 519 2.743183 GCTAATCTGCACCCGAACTCAT 60.743 50.000 0.00 0.00 0.00 2.90
501 520 3.492656 GCTAATCTGCACCCGAACTCATA 60.493 47.826 0.00 0.00 0.00 2.15
502 521 3.845781 AATCTGCACCCGAACTCATAT 57.154 42.857 0.00 0.00 0.00 1.78
503 522 2.602257 TCTGCACCCGAACTCATATG 57.398 50.000 0.00 0.00 0.00 1.78
504 523 0.940126 CTGCACCCGAACTCATATGC 59.060 55.000 0.00 0.00 0.00 3.14
505 524 0.541392 TGCACCCGAACTCATATGCT 59.459 50.000 0.00 0.00 34.18 3.79
506 525 1.221414 GCACCCGAACTCATATGCTC 58.779 55.000 0.00 0.00 0.00 4.26
507 526 1.871080 CACCCGAACTCATATGCTCC 58.129 55.000 0.00 0.00 0.00 4.70
508 527 0.759346 ACCCGAACTCATATGCTCCC 59.241 55.000 0.00 0.00 0.00 4.30
509 528 0.319900 CCCGAACTCATATGCTCCCG 60.320 60.000 0.00 0.00 0.00 5.14
510 529 0.946221 CCGAACTCATATGCTCCCGC 60.946 60.000 0.00 0.00 0.00 6.13
519 538 2.749682 TGCTCCCGCATGAACAGT 59.250 55.556 0.00 0.00 42.25 3.55
520 539 1.979262 TGCTCCCGCATGAACAGTA 59.021 52.632 0.00 0.00 42.25 2.74
521 540 0.323302 TGCTCCCGCATGAACAGTAA 59.677 50.000 0.00 0.00 42.25 2.24
522 541 1.271108 TGCTCCCGCATGAACAGTAAA 60.271 47.619 0.00 0.00 42.25 2.01
523 542 1.810151 GCTCCCGCATGAACAGTAAAA 59.190 47.619 0.00 0.00 35.78 1.52
524 543 2.423538 GCTCCCGCATGAACAGTAAAAT 59.576 45.455 0.00 0.00 35.78 1.82
525 544 3.487544 GCTCCCGCATGAACAGTAAAATC 60.488 47.826 0.00 0.00 35.78 2.17
526 545 2.675844 TCCCGCATGAACAGTAAAATCG 59.324 45.455 0.00 0.00 0.00 3.34
527 546 2.675844 CCCGCATGAACAGTAAAATCGA 59.324 45.455 0.00 0.00 0.00 3.59
528 547 3.126171 CCCGCATGAACAGTAAAATCGAA 59.874 43.478 0.00 0.00 0.00 3.71
529 548 4.378978 CCCGCATGAACAGTAAAATCGAAA 60.379 41.667 0.00 0.00 0.00 3.46
530 549 5.150683 CCGCATGAACAGTAAAATCGAAAA 58.849 37.500 0.00 0.00 0.00 2.29
531 550 5.627367 CCGCATGAACAGTAAAATCGAAAAA 59.373 36.000 0.00 0.00 0.00 1.94
579 598 9.487790 TTTTTGAGAGAAACATTGACAAAAGTT 57.512 25.926 0.00 0.00 37.18 2.66
580 599 8.687824 TTTGAGAGAAACATTGACAAAAGTTC 57.312 30.769 9.09 5.33 0.00 3.01
581 600 7.630242 TGAGAGAAACATTGACAAAAGTTCT 57.370 32.000 9.09 9.17 0.00 3.01
582 601 8.731275 TGAGAGAAACATTGACAAAAGTTCTA 57.269 30.769 9.09 0.00 0.00 2.10
583 602 9.173021 TGAGAGAAACATTGACAAAAGTTCTAA 57.827 29.630 9.09 0.00 0.00 2.10
584 603 9.439537 GAGAGAAACATTGACAAAAGTTCTAAC 57.560 33.333 9.09 4.95 0.00 2.34
585 604 9.178758 AGAGAAACATTGACAAAAGTTCTAACT 57.821 29.630 9.09 7.30 42.04 2.24
586 605 9.226345 GAGAAACATTGACAAAAGTTCTAACTG 57.774 33.333 9.09 0.00 39.66 3.16
587 606 7.702348 AGAAACATTGACAAAAGTTCTAACTGC 59.298 33.333 9.09 0.00 39.66 4.40
588 607 5.831997 ACATTGACAAAAGTTCTAACTGCC 58.168 37.500 0.00 0.00 39.66 4.85
589 608 5.594317 ACATTGACAAAAGTTCTAACTGCCT 59.406 36.000 0.00 0.00 39.66 4.75
590 609 5.499139 TTGACAAAAGTTCTAACTGCCTG 57.501 39.130 0.00 0.00 39.66 4.85
591 610 3.315191 TGACAAAAGTTCTAACTGCCTGC 59.685 43.478 0.00 0.00 39.66 4.85
592 611 3.287222 ACAAAAGTTCTAACTGCCTGCA 58.713 40.909 0.00 0.00 39.66 4.41
593 612 3.699038 ACAAAAGTTCTAACTGCCTGCAA 59.301 39.130 0.00 0.00 39.66 4.08
594 613 4.159506 ACAAAAGTTCTAACTGCCTGCAAA 59.840 37.500 0.00 0.00 39.66 3.68
595 614 5.108517 CAAAAGTTCTAACTGCCTGCAAAA 58.891 37.500 0.00 0.00 39.66 2.44
596 615 5.337578 AAAGTTCTAACTGCCTGCAAAAA 57.662 34.783 0.00 0.00 39.66 1.94
597 616 5.535753 AAGTTCTAACTGCCTGCAAAAAT 57.464 34.783 0.00 0.00 39.66 1.82
598 617 5.535753 AGTTCTAACTGCCTGCAAAAATT 57.464 34.783 0.00 0.00 37.98 1.82
599 618 5.532557 AGTTCTAACTGCCTGCAAAAATTC 58.467 37.500 0.00 0.00 37.98 2.17
600 619 4.159377 TCTAACTGCCTGCAAAAATTCG 57.841 40.909 0.00 0.00 0.00 3.34
601 620 2.888834 AACTGCCTGCAAAAATTCGT 57.111 40.000 0.00 0.00 0.00 3.85
602 621 2.422276 ACTGCCTGCAAAAATTCGTC 57.578 45.000 0.00 0.00 0.00 4.20
603 622 1.680735 ACTGCCTGCAAAAATTCGTCA 59.319 42.857 0.00 0.00 0.00 4.35
604 623 2.297033 ACTGCCTGCAAAAATTCGTCAT 59.703 40.909 0.00 0.00 0.00 3.06
605 624 2.664568 CTGCCTGCAAAAATTCGTCATG 59.335 45.455 0.00 0.00 0.00 3.07
606 625 2.295629 TGCCTGCAAAAATTCGTCATGA 59.704 40.909 0.00 0.00 0.00 3.07
607 626 3.243670 TGCCTGCAAAAATTCGTCATGAA 60.244 39.130 0.00 0.00 41.81 2.57
608 627 3.740321 GCCTGCAAAAATTCGTCATGAAA 59.260 39.130 0.00 0.00 40.71 2.69
609 628 4.389687 GCCTGCAAAAATTCGTCATGAAAT 59.610 37.500 0.00 0.00 40.71 2.17
610 629 5.445010 GCCTGCAAAAATTCGTCATGAAATC 60.445 40.000 0.00 0.00 40.71 2.17
611 630 5.634439 CCTGCAAAAATTCGTCATGAAATCA 59.366 36.000 0.00 0.00 40.71 2.57
612 631 6.400303 CCTGCAAAAATTCGTCATGAAATCAC 60.400 38.462 0.00 0.00 40.71 3.06
613 632 5.981915 TGCAAAAATTCGTCATGAAATCACA 59.018 32.000 0.00 0.00 40.71 3.58
614 633 6.645827 TGCAAAAATTCGTCATGAAATCACAT 59.354 30.769 0.00 0.00 40.71 3.21
615 634 7.171167 TGCAAAAATTCGTCATGAAATCACATT 59.829 29.630 0.00 0.00 40.71 2.71
616 635 7.685304 GCAAAAATTCGTCATGAAATCACATTC 59.315 33.333 0.00 0.00 40.71 2.67
617 636 7.816945 AAAATTCGTCATGAAATCACATTCC 57.183 32.000 0.00 0.00 40.71 3.01
618 637 6.764308 AATTCGTCATGAAATCACATTCCT 57.236 33.333 0.00 0.00 40.71 3.36
619 638 7.864108 AATTCGTCATGAAATCACATTCCTA 57.136 32.000 0.00 0.00 40.71 2.94
620 639 6.908870 TTCGTCATGAAATCACATTCCTAG 57.091 37.500 0.00 0.00 32.37 3.02
621 640 6.220726 TCGTCATGAAATCACATTCCTAGA 57.779 37.500 0.00 0.00 0.00 2.43
622 641 6.639563 TCGTCATGAAATCACATTCCTAGAA 58.360 36.000 0.00 0.00 0.00 2.10
623 642 6.758416 TCGTCATGAAATCACATTCCTAGAAG 59.242 38.462 0.00 0.00 0.00 2.85
624 643 6.018425 CGTCATGAAATCACATTCCTAGAAGG 60.018 42.308 0.00 0.00 36.46 3.46
625 644 5.824624 TCATGAAATCACATTCCTAGAAGGC 59.175 40.000 0.00 0.00 34.61 4.35
626 645 4.191544 TGAAATCACATTCCTAGAAGGCG 58.808 43.478 0.00 0.00 34.61 5.52
627 646 3.914426 AATCACATTCCTAGAAGGCGT 57.086 42.857 0.00 0.00 34.61 5.68
628 647 2.672961 TCACATTCCTAGAAGGCGTG 57.327 50.000 0.00 0.00 34.61 5.34
629 648 1.207089 TCACATTCCTAGAAGGCGTGG 59.793 52.381 0.00 0.00 34.61 4.94
630 649 0.107654 ACATTCCTAGAAGGCGTGGC 60.108 55.000 0.00 0.00 34.61 5.01
631 650 0.107703 CATTCCTAGAAGGCGTGGCA 60.108 55.000 0.00 0.00 34.61 4.92
632 651 0.618458 ATTCCTAGAAGGCGTGGCAA 59.382 50.000 0.00 0.00 34.61 4.52
633 652 0.398696 TTCCTAGAAGGCGTGGCAAA 59.601 50.000 0.00 0.00 34.61 3.68
634 653 0.398696 TCCTAGAAGGCGTGGCAAAA 59.601 50.000 0.00 0.00 34.61 2.44
635 654 1.202830 TCCTAGAAGGCGTGGCAAAAA 60.203 47.619 0.00 0.00 34.61 1.94
658 677 8.825667 AAAAAGCAAAAACAGTACTCTGAAAA 57.174 26.923 0.00 0.00 43.76 2.29
659 678 8.825667 AAAAGCAAAAACAGTACTCTGAAAAA 57.174 26.923 0.00 0.00 43.76 1.94
660 679 8.466086 AAAGCAAAAACAGTACTCTGAAAAAG 57.534 30.769 0.00 0.00 43.76 2.27
661 680 6.036470 AGCAAAAACAGTACTCTGAAAAAGC 58.964 36.000 0.00 0.00 43.76 3.51
662 681 6.036470 GCAAAAACAGTACTCTGAAAAAGCT 58.964 36.000 0.00 0.00 43.76 3.74
663 682 7.067008 AGCAAAAACAGTACTCTGAAAAAGCTA 59.933 33.333 0.00 0.00 43.76 3.32
664 683 7.165977 GCAAAAACAGTACTCTGAAAAAGCTAC 59.834 37.037 0.00 0.00 43.76 3.58
665 684 8.398665 CAAAAACAGTACTCTGAAAAAGCTACT 58.601 33.333 0.00 0.00 43.76 2.57
666 685 8.507524 AAAACAGTACTCTGAAAAAGCTACTT 57.492 30.769 0.00 0.00 43.76 2.24
667 686 8.507524 AAACAGTACTCTGAAAAAGCTACTTT 57.492 30.769 0.00 0.00 43.76 2.66
668 687 7.716768 ACAGTACTCTGAAAAAGCTACTTTC 57.283 36.000 12.26 12.26 43.76 2.62
669 688 7.272978 ACAGTACTCTGAAAAAGCTACTTTCA 58.727 34.615 18.13 18.13 43.76 2.69
670 689 7.769044 ACAGTACTCTGAAAAAGCTACTTTCAA 59.231 33.333 19.14 12.10 41.10 2.69
671 690 8.612619 CAGTACTCTGAAAAAGCTACTTTCAAA 58.387 33.333 19.14 9.92 41.10 2.69
672 691 8.613482 AGTACTCTGAAAAAGCTACTTTCAAAC 58.387 33.333 19.14 15.25 41.10 2.93
673 692 6.487103 ACTCTGAAAAAGCTACTTTCAAACG 58.513 36.000 19.14 14.03 41.10 3.60
674 693 5.270853 TCTGAAAAAGCTACTTTCAAACGC 58.729 37.500 19.14 0.00 41.10 4.84
675 694 4.987832 TGAAAAAGCTACTTTCAAACGCA 58.012 34.783 17.31 0.00 39.28 5.24
676 695 5.587289 TGAAAAAGCTACTTTCAAACGCAT 58.413 33.333 17.31 0.00 39.28 4.73
677 696 6.039616 TGAAAAAGCTACTTTCAAACGCATT 58.960 32.000 17.31 0.00 39.28 3.56
678 697 6.533367 TGAAAAAGCTACTTTCAAACGCATTT 59.467 30.769 17.31 0.00 39.28 2.32
679 698 6.902224 AAAAGCTACTTTCAAACGCATTTT 57.098 29.167 0.00 0.00 31.99 1.82
680 699 5.888412 AAGCTACTTTCAAACGCATTTTG 57.112 34.783 0.00 2.03 45.38 2.44
688 707 3.492725 CAAACGCATTTTGAAGCACTG 57.507 42.857 2.24 0.00 46.76 3.66
689 708 3.114809 CAAACGCATTTTGAAGCACTGA 58.885 40.909 2.24 0.00 46.76 3.41
690 709 3.435105 AACGCATTTTGAAGCACTGAA 57.565 38.095 0.00 0.00 0.00 3.02
691 710 3.648339 ACGCATTTTGAAGCACTGAAT 57.352 38.095 0.00 0.00 0.00 2.57
692 711 3.981211 ACGCATTTTGAAGCACTGAATT 58.019 36.364 0.00 0.00 0.00 2.17
693 712 4.370917 ACGCATTTTGAAGCACTGAATTT 58.629 34.783 0.00 0.00 0.00 1.82
694 713 4.209703 ACGCATTTTGAAGCACTGAATTTG 59.790 37.500 0.00 0.00 0.00 2.32
695 714 4.209703 CGCATTTTGAAGCACTGAATTTGT 59.790 37.500 0.00 0.00 0.00 2.83
696 715 5.276963 CGCATTTTGAAGCACTGAATTTGTT 60.277 36.000 0.00 0.00 0.00 2.83
697 716 6.488817 GCATTTTGAAGCACTGAATTTGTTT 58.511 32.000 0.00 0.00 0.00 2.83
698 717 6.968335 GCATTTTGAAGCACTGAATTTGTTTT 59.032 30.769 0.00 0.00 0.00 2.43
699 718 7.485595 GCATTTTGAAGCACTGAATTTGTTTTT 59.514 29.630 0.00 0.00 0.00 1.94
716 735 2.500509 TTTTTGCCACGCCTTACAAG 57.499 45.000 0.00 0.00 0.00 3.16
717 736 1.681538 TTTTGCCACGCCTTACAAGA 58.318 45.000 0.00 0.00 0.00 3.02
718 737 1.681538 TTTGCCACGCCTTACAAGAA 58.318 45.000 0.00 0.00 0.00 2.52
719 738 1.904287 TTGCCACGCCTTACAAGAAT 58.096 45.000 0.00 0.00 0.00 2.40
720 739 1.164411 TGCCACGCCTTACAAGAATG 58.836 50.000 0.00 0.00 0.00 2.67
721 740 1.165270 GCCACGCCTTACAAGAATGT 58.835 50.000 0.00 0.00 43.74 2.71
722 741 1.135689 GCCACGCCTTACAAGAATGTG 60.136 52.381 0.00 0.00 40.84 3.21
723 742 2.422597 CCACGCCTTACAAGAATGTGA 58.577 47.619 8.71 0.00 40.84 3.58
724 743 3.009723 CCACGCCTTACAAGAATGTGAT 58.990 45.455 8.71 0.00 40.84 3.06
725 744 3.440173 CCACGCCTTACAAGAATGTGATT 59.560 43.478 8.71 0.00 40.84 2.57
726 745 4.082787 CCACGCCTTACAAGAATGTGATTT 60.083 41.667 8.71 0.00 40.84 2.17
727 746 5.088739 CACGCCTTACAAGAATGTGATTTC 58.911 41.667 0.00 0.00 40.84 2.17
728 747 4.759693 ACGCCTTACAAGAATGTGATTTCA 59.240 37.500 0.00 0.00 40.84 2.69
729 748 5.415701 ACGCCTTACAAGAATGTGATTTCAT 59.584 36.000 0.00 0.00 40.84 2.57
730 749 5.740569 CGCCTTACAAGAATGTGATTTCATG 59.259 40.000 0.00 0.00 40.84 3.07
731 750 6.403527 CGCCTTACAAGAATGTGATTTCATGA 60.404 38.462 0.00 0.00 40.84 3.07
732 751 7.486647 GCCTTACAAGAATGTGATTTCATGAT 58.513 34.615 0.00 0.00 40.84 2.45
733 752 7.434307 GCCTTACAAGAATGTGATTTCATGATG 59.566 37.037 0.00 0.00 40.84 3.07
734 753 8.680001 CCTTACAAGAATGTGATTTCATGATGA 58.320 33.333 0.00 0.00 40.84 2.92
738 757 9.938280 ACAAGAATGTGATTTCATGATGAATTT 57.062 25.926 8.90 0.00 38.69 1.82
742 761 9.485591 GAATGTGATTTCATGATGAATTTTTGC 57.514 29.630 8.90 0.00 36.11 3.68
743 762 7.964604 TGTGATTTCATGATGAATTTTTGCA 57.035 28.000 8.90 1.87 36.11 4.08
744 763 8.024146 TGTGATTTCATGATGAATTTTTGCAG 57.976 30.769 8.90 0.00 36.11 4.41
745 764 7.118535 TGTGATTTCATGATGAATTTTTGCAGG 59.881 33.333 8.90 0.00 36.11 4.85
746 765 5.866335 TTTCATGATGAATTTTTGCAGGC 57.134 34.783 8.90 0.00 36.11 4.85
747 766 4.538746 TCATGATGAATTTTTGCAGGCA 57.461 36.364 0.00 0.00 0.00 4.75
748 767 4.247258 TCATGATGAATTTTTGCAGGCAC 58.753 39.130 0.00 0.00 0.00 5.01
749 768 4.020928 TCATGATGAATTTTTGCAGGCACT 60.021 37.500 0.00 0.00 43.88 4.40
750 769 4.339872 TGATGAATTTTTGCAGGCACTT 57.660 36.364 0.00 0.00 34.60 3.16
751 770 5.465532 TGATGAATTTTTGCAGGCACTTA 57.534 34.783 0.00 0.00 34.60 2.24
752 771 5.472148 TGATGAATTTTTGCAGGCACTTAG 58.528 37.500 0.00 0.00 34.60 2.18
753 772 5.243507 TGATGAATTTTTGCAGGCACTTAGA 59.756 36.000 0.00 0.00 34.60 2.10
754 773 5.528043 TGAATTTTTGCAGGCACTTAGAA 57.472 34.783 0.00 0.00 34.60 2.10
755 774 5.288804 TGAATTTTTGCAGGCACTTAGAAC 58.711 37.500 0.00 0.00 34.60 3.01
756 775 5.068987 TGAATTTTTGCAGGCACTTAGAACT 59.931 36.000 0.00 0.00 34.60 3.01
757 776 5.535753 ATTTTTGCAGGCACTTAGAACTT 57.464 34.783 0.00 0.00 34.60 2.66
758 777 5.337578 TTTTTGCAGGCACTTAGAACTTT 57.662 34.783 0.00 0.00 34.60 2.66
759 778 5.337578 TTTTGCAGGCACTTAGAACTTTT 57.662 34.783 0.00 0.00 34.60 2.27
760 779 3.988379 TGCAGGCACTTAGAACTTTTG 57.012 42.857 0.00 0.00 34.60 2.44
761 780 3.287222 TGCAGGCACTTAGAACTTTTGT 58.713 40.909 0.00 0.00 34.60 2.83
762 781 3.315191 TGCAGGCACTTAGAACTTTTGTC 59.685 43.478 0.00 0.00 34.60 3.18
763 782 3.315191 GCAGGCACTTAGAACTTTTGTCA 59.685 43.478 0.00 0.00 34.60 3.58
764 783 4.202010 GCAGGCACTTAGAACTTTTGTCAA 60.202 41.667 0.00 0.00 34.60 3.18
765 784 5.507985 GCAGGCACTTAGAACTTTTGTCAAT 60.508 40.000 0.00 0.00 34.60 2.57
766 785 5.916883 CAGGCACTTAGAACTTTTGTCAATG 59.083 40.000 0.00 0.00 34.60 2.82
767 786 5.594317 AGGCACTTAGAACTTTTGTCAATGT 59.406 36.000 0.00 0.00 27.25 2.71
768 787 6.096846 AGGCACTTAGAACTTTTGTCAATGTT 59.903 34.615 4.72 4.72 27.25 2.71
769 788 6.756542 GGCACTTAGAACTTTTGTCAATGTTT 59.243 34.615 6.10 0.00 31.96 2.83
770 789 7.043391 GGCACTTAGAACTTTTGTCAATGTTTC 60.043 37.037 6.10 1.04 31.96 2.78
771 790 7.702348 GCACTTAGAACTTTTGTCAATGTTTCT 59.298 33.333 6.10 6.96 31.96 2.52
772 791 9.226345 CACTTAGAACTTTTGTCAATGTTTCTC 57.774 33.333 6.42 0.00 31.96 2.87
773 792 9.178758 ACTTAGAACTTTTGTCAATGTTTCTCT 57.821 29.630 6.42 3.36 31.96 3.10
823 842 4.822036 TTCGGTTTTACTGTTCATGTGG 57.178 40.909 0.00 0.00 0.00 4.17
824 843 3.142951 TCGGTTTTACTGTTCATGTGGG 58.857 45.455 0.00 0.00 0.00 4.61
825 844 3.142951 CGGTTTTACTGTTCATGTGGGA 58.857 45.455 0.00 0.00 0.00 4.37
826 845 3.188460 CGGTTTTACTGTTCATGTGGGAG 59.812 47.826 0.00 0.00 0.00 4.30
827 846 3.057526 GGTTTTACTGTTCATGTGGGAGC 60.058 47.826 0.00 0.00 0.00 4.70
828 847 3.500448 TTTACTGTTCATGTGGGAGCA 57.500 42.857 0.00 0.00 0.00 4.26
829 848 3.719268 TTACTGTTCATGTGGGAGCAT 57.281 42.857 0.00 0.00 0.00 3.79
830 849 4.835284 TTACTGTTCATGTGGGAGCATA 57.165 40.909 0.00 0.00 0.00 3.14
831 850 3.939740 ACTGTTCATGTGGGAGCATAT 57.060 42.857 0.00 0.00 0.00 1.78
832 851 3.548770 ACTGTTCATGTGGGAGCATATG 58.451 45.455 0.00 0.00 0.00 1.78
833 852 3.200605 ACTGTTCATGTGGGAGCATATGA 59.799 43.478 6.97 0.00 32.20 2.15
834 853 3.812262 TGTTCATGTGGGAGCATATGAG 58.188 45.455 6.97 0.00 34.89 2.90
835 854 2.551459 GTTCATGTGGGAGCATATGAGC 59.449 50.000 6.97 0.00 34.89 4.26
843 862 2.521103 AGCATATGAGCTCGGGTGT 58.479 52.632 9.64 0.00 42.18 4.16
844 863 1.704641 AGCATATGAGCTCGGGTGTA 58.295 50.000 9.64 0.00 42.18 2.90
845 864 1.615883 AGCATATGAGCTCGGGTGTAG 59.384 52.381 9.64 0.00 42.18 2.74
846 865 1.613925 GCATATGAGCTCGGGTGTAGA 59.386 52.381 9.64 0.00 0.00 2.59
847 866 2.035961 GCATATGAGCTCGGGTGTAGAA 59.964 50.000 9.64 0.00 0.00 2.10
848 867 3.306364 GCATATGAGCTCGGGTGTAGAAT 60.306 47.826 9.64 0.00 0.00 2.40
849 868 2.898729 ATGAGCTCGGGTGTAGAATG 57.101 50.000 9.64 0.00 0.00 2.67
850 869 0.824109 TGAGCTCGGGTGTAGAATGG 59.176 55.000 9.64 0.00 0.00 3.16
851 870 1.112113 GAGCTCGGGTGTAGAATGGA 58.888 55.000 0.00 0.00 0.00 3.41
852 871 0.824759 AGCTCGGGTGTAGAATGGAC 59.175 55.000 0.00 0.00 0.00 4.02
853 872 0.824759 GCTCGGGTGTAGAATGGACT 59.175 55.000 0.00 0.00 0.00 3.85
854 873 1.207329 GCTCGGGTGTAGAATGGACTT 59.793 52.381 0.00 0.00 0.00 3.01
855 874 2.354805 GCTCGGGTGTAGAATGGACTTT 60.355 50.000 0.00 0.00 0.00 2.66
856 875 3.868754 GCTCGGGTGTAGAATGGACTTTT 60.869 47.826 0.00 0.00 0.00 2.27
857 876 3.933332 CTCGGGTGTAGAATGGACTTTTC 59.067 47.826 0.00 0.00 0.00 2.29
861 880 3.933332 GGTGTAGAATGGACTTTTCGAGG 59.067 47.826 0.00 0.00 0.00 4.63
896 915 6.597832 TCTTCCTTTACTTCTCTCTCCTTG 57.402 41.667 0.00 0.00 0.00 3.61
949 979 2.050985 GCACGTCCTTGTTGCAGC 60.051 61.111 0.00 0.00 0.00 5.25
950 980 2.833533 GCACGTCCTTGTTGCAGCA 61.834 57.895 0.00 0.00 0.00 4.41
951 981 1.009675 CACGTCCTTGTTGCAGCAC 60.010 57.895 1.37 0.00 0.00 4.40
952 982 1.451207 ACGTCCTTGTTGCAGCACA 60.451 52.632 1.37 0.00 0.00 4.57
953 983 0.819259 ACGTCCTTGTTGCAGCACAT 60.819 50.000 1.37 0.00 0.00 3.21
954 984 1.155889 CGTCCTTGTTGCAGCACATA 58.844 50.000 1.37 0.00 0.00 2.29
955 985 1.535028 CGTCCTTGTTGCAGCACATAA 59.465 47.619 1.37 0.00 0.00 1.90
956 986 2.162208 CGTCCTTGTTGCAGCACATAAT 59.838 45.455 1.37 0.00 0.00 1.28
957 987 3.504863 GTCCTTGTTGCAGCACATAATG 58.495 45.455 1.37 0.00 0.00 1.90
977 1007 2.042831 GCGAAGTCAGCCAGGCAAT 61.043 57.895 15.80 0.00 0.00 3.56
999 1045 1.153823 CCAACAGCCGACCTAGACG 60.154 63.158 0.00 0.00 0.00 4.18
1206 1267 1.598130 GGCGATTTGATCCTCCCCG 60.598 63.158 0.00 0.00 0.00 5.73
1207 1268 1.445942 GCGATTTGATCCTCCCCGA 59.554 57.895 0.00 0.00 0.00 5.14
1412 1480 6.498303 AGGAACCCTAGCTTGATTTGATTTTT 59.502 34.615 0.00 0.00 28.47 1.94
1413 1481 6.813649 GGAACCCTAGCTTGATTTGATTTTTC 59.186 38.462 0.00 0.00 0.00 2.29
1414 1482 5.954335 ACCCTAGCTTGATTTGATTTTTCG 58.046 37.500 0.00 0.00 0.00 3.46
1415 1483 5.476945 ACCCTAGCTTGATTTGATTTTTCGT 59.523 36.000 0.00 0.00 0.00 3.85
1416 1484 6.657541 ACCCTAGCTTGATTTGATTTTTCGTA 59.342 34.615 0.00 0.00 0.00 3.43
1426 1494 8.181573 TGATTTGATTTTTCGTATAGAAGTGGC 58.818 33.333 0.00 0.00 40.40 5.01
1442 1520 3.649986 GCACGCTGCGTCCTGTTT 61.650 61.111 26.49 0.00 38.32 2.83
1474 1552 3.571401 GTCGGTAGGATCTTTTCGGGATA 59.429 47.826 0.00 0.00 0.00 2.59
1486 1564 7.045126 TCTTTTCGGGATATTTTTGTGTGTT 57.955 32.000 0.00 0.00 0.00 3.32
1515 1596 1.998315 CAGTCGAATCCAACTGAGCTG 59.002 52.381 0.00 0.00 44.54 4.24
1717 1809 2.679082 GGAGCCAGGGTCTACATTAGA 58.321 52.381 18.34 0.00 0.00 2.10
1734 1826 6.303839 ACATTAGAGGAAACCACTGCTTTTA 58.696 36.000 0.00 0.00 0.00 1.52
1736 1828 8.107095 ACATTAGAGGAAACCACTGCTTTTATA 58.893 33.333 0.00 0.00 0.00 0.98
1741 1833 9.125026 AGAGGAAACCACTGCTTTTATATATTG 57.875 33.333 0.00 0.00 0.00 1.90
1742 1834 8.823220 AGGAAACCACTGCTTTTATATATTGT 57.177 30.769 0.00 0.00 0.00 2.71
1743 1835 8.903820 AGGAAACCACTGCTTTTATATATTGTC 58.096 33.333 0.00 0.00 0.00 3.18
1744 1836 8.903820 GGAAACCACTGCTTTTATATATTGTCT 58.096 33.333 0.00 0.00 0.00 3.41
1787 1879 5.673337 TCGGCATTTCAAGATATAGCAAC 57.327 39.130 0.00 0.00 0.00 4.17
1802 1894 0.610687 GCAACTAGCTCCAGTCCTGT 59.389 55.000 0.00 0.00 41.15 4.00
1810 1902 0.683973 CTCCAGTCCTGTGCTGTTCT 59.316 55.000 0.00 0.00 32.41 3.01
1839 1931 1.078567 GGAGGAGCTTCCAGCACAG 60.079 63.158 0.00 0.00 45.56 3.66
1852 1944 1.373748 GCACAGCCACCATTGCTTG 60.374 57.895 0.00 0.00 36.81 4.01
1867 1962 3.657398 TGCTTGGTCCATCAGATGAAT 57.343 42.857 12.41 0.00 0.00 2.57
1899 1994 2.492088 GGCCCAATAACCACAAGAACTC 59.508 50.000 0.00 0.00 0.00 3.01
1937 2032 3.132289 GGATCTCACCACGATTCTTGGTA 59.868 47.826 13.93 0.57 46.13 3.25
2017 2112 0.039978 CGGCAAATTTGGTGCGTACA 60.040 50.000 19.47 0.00 43.18 2.90
2314 2409 1.579698 CTGATGAGGACCTTGATGCG 58.420 55.000 0.00 0.00 0.00 4.73
2434 2529 4.111255 TGTCTCCCCAAATGATTGTGAA 57.889 40.909 0.00 0.00 34.60 3.18
2440 2535 3.445096 CCCCAAATGATTGTGAAGAGACC 59.555 47.826 0.00 0.00 34.60 3.85
2585 2680 2.616524 TGGATAATTCCCTACTCCCCG 58.383 52.381 0.00 0.00 41.83 5.73
2596 2691 2.888464 TACTCCCCGGCAGAGACTCG 62.888 65.000 22.49 1.46 35.27 4.18
2609 2704 2.094803 AGAGACTCGACTGCATGTCAAG 60.095 50.000 14.09 9.05 45.60 3.02
2626 2721 5.674525 TGTCAAGCAGATATAGAAAGTGGG 58.325 41.667 0.00 0.00 0.00 4.61
2880 2975 5.131642 TGCTTCCAGACCATCAAGATAAGAT 59.868 40.000 0.00 0.00 0.00 2.40
2888 2983 7.066645 CAGACCATCAAGATAAGATTCAAAGCA 59.933 37.037 0.00 0.00 0.00 3.91
2974 3069 7.416326 GCAAAAGATTTGGGTATACCTCGAAAT 60.416 37.037 21.25 19.80 41.11 2.17
3418 3513 9.158233 GCTGTATATTACCAACAAGACAGTTTA 57.842 33.333 0.00 0.00 36.33 2.01
3507 3602 1.227853 AGAACAGTGCCGGTCCAAC 60.228 57.895 1.90 0.00 0.00 3.77
3795 3890 2.081585 AAAGTTGCTCCTGGACCCCC 62.082 60.000 0.00 0.00 0.00 5.40
3861 3956 2.804986 TCAGTGGCAAATGGAGCATA 57.195 45.000 0.00 0.00 0.00 3.14
3931 4026 1.025113 GTTTGGCTACCTCTTCGCCC 61.025 60.000 0.00 0.00 43.12 6.13
4006 4101 3.008375 TCAAGGATGGTCTTTCACAGAGG 59.992 47.826 0.00 0.00 29.34 3.69
4341 4445 3.755378 GCTATTCATGCCTACAGAATGGG 59.245 47.826 0.00 0.00 43.62 4.00
4520 4624 7.432350 AGTTTTCTTTCAGCTAAGATGTCTG 57.568 36.000 0.00 0.00 34.33 3.51
4838 4942 2.871453 ACAACCAACCATACCTCCAAC 58.129 47.619 0.00 0.00 0.00 3.77
4840 4944 1.451449 ACCAACCATACCTCCAACCA 58.549 50.000 0.00 0.00 0.00 3.67
4952 5056 7.196331 CCCCTCGTTAATTTCATCAAGAATTC 58.804 38.462 0.00 0.00 35.83 2.17
5007 5111 7.748847 AGAAATACGCAGAAATAAATGAACGT 58.251 30.769 0.00 0.00 36.38 3.99
5008 5112 8.875803 AGAAATACGCAGAAATAAATGAACGTA 58.124 29.630 0.00 0.00 38.86 3.57
5009 5113 9.144085 GAAATACGCAGAAATAAATGAACGTAG 57.856 33.333 0.00 0.00 38.05 3.51
5067 5171 5.181433 GCCCAACTCTTTAAAAGACCTACAG 59.819 44.000 0.00 0.00 33.12 2.74
5096 5200 4.096682 GTCAGAGGTAGTAGTGCCTAACAG 59.903 50.000 7.25 0.00 39.27 3.16
5279 5385 6.403866 TGCATTTTTGTACAGACCAAAGAT 57.596 33.333 0.00 0.00 33.67 2.40
5303 5409 0.180406 GGAGGGAGGCGCAAATTCTA 59.820 55.000 10.83 0.00 0.00 2.10
5895 6001 0.519077 GTAGCAGCAGCAAAGTGTCC 59.481 55.000 3.17 0.00 45.49 4.02
5931 6037 5.191426 CCTTTCATCAGACTCCACATCATT 58.809 41.667 0.00 0.00 0.00 2.57
5979 6085 7.154656 TGCCTGATATGTATCTATTGACACAC 58.845 38.462 0.00 0.00 31.92 3.82
6028 6134 6.128172 GGATAGCATTATGGGAAATCTTGACG 60.128 42.308 0.00 0.00 0.00 4.35
6078 6185 2.853662 GCGGCGCTATCATAGGTATACG 60.854 54.545 26.86 0.00 0.00 3.06
6175 6283 6.303839 GTGCCCCCAAATCATCTAGTAATAA 58.696 40.000 0.00 0.00 0.00 1.40
6176 6284 6.431234 GTGCCCCCAAATCATCTAGTAATAAG 59.569 42.308 0.00 0.00 0.00 1.73
6177 6285 6.331572 TGCCCCCAAATCATCTAGTAATAAGA 59.668 38.462 0.00 0.00 0.00 2.10
6381 6489 1.267121 AGGTTACGAGCCATGTCAGT 58.733 50.000 0.00 0.00 0.00 3.41
6448 6556 2.104451 ACATGCCATCAACCAGCAAAAA 59.896 40.909 0.00 0.00 40.46 1.94
6536 6644 4.133820 TGGTCACACTGTATTCTGTTTGG 58.866 43.478 0.00 0.00 0.00 3.28
6611 6721 2.946564 TCTGAGTTGACATGTACTGCG 58.053 47.619 6.00 0.00 0.00 5.18
6623 6733 1.084289 GTACTGCGGGCTTTTGTAGG 58.916 55.000 0.00 0.00 0.00 3.18
6922 7035 4.628766 GGAACGGACCAGTACATAAACTTC 59.371 45.833 0.00 0.00 0.00 3.01
6927 7040 4.329256 GGACCAGTACATAAACTTCGCTTC 59.671 45.833 0.00 0.00 0.00 3.86
6966 7079 6.379386 GGGAACATAAACTTTGTTAGAGCAC 58.621 40.000 0.00 0.00 37.43 4.40
7044 7157 1.956170 GCATGGCGTATGAGGTCGG 60.956 63.158 6.06 0.00 39.21 4.79
7055 7168 4.082949 CGTATGAGGTCGGCATCAAGTATA 60.083 45.833 9.02 0.00 38.97 1.47
7071 7184 6.953101 TCAAGTATATGGCAGTTTAGGTTCA 58.047 36.000 0.00 0.00 0.00 3.18
7083 7196 6.206829 GCAGTTTAGGTTCATTTAGTTCACCT 59.793 38.462 0.00 0.00 41.00 4.00
7084 7197 7.584987 CAGTTTAGGTTCATTTAGTTCACCTG 58.415 38.462 0.00 0.00 38.37 4.00
7085 7198 7.444183 CAGTTTAGGTTCATTTAGTTCACCTGA 59.556 37.037 0.00 0.00 38.37 3.86
7096 7210 8.491152 CATTTAGTTCACCTGACGAATATCATC 58.509 37.037 0.00 0.00 0.00 2.92
7097 7211 4.950050 AGTTCACCTGACGAATATCATCC 58.050 43.478 0.00 0.00 0.00 3.51
7103 7217 3.393800 CTGACGAATATCATCCGGCTTT 58.606 45.455 0.00 0.00 31.61 3.51
7237 7353 1.679977 GGATGGCCAGCTCTTGCAA 60.680 57.895 22.39 0.00 42.74 4.08
7238 7354 1.509923 GATGGCCAGCTCTTGCAAC 59.490 57.895 15.35 0.00 42.74 4.17
7239 7355 1.228644 ATGGCCAGCTCTTGCAACA 60.229 52.632 13.05 0.00 42.74 3.33
7240 7356 1.530013 ATGGCCAGCTCTTGCAACAC 61.530 55.000 13.05 0.00 42.74 3.32
7241 7357 2.253452 GCCAGCTCTTGCAACACG 59.747 61.111 0.00 0.00 42.74 4.49
7333 7451 1.133513 TCTCCAACAGCAACCCACAAT 60.134 47.619 0.00 0.00 0.00 2.71
7486 7608 6.852853 CACAGACGGATTTCATATAAACATGC 59.147 38.462 0.00 0.00 0.00 4.06
7487 7609 6.017109 ACAGACGGATTTCATATAAACATGCC 60.017 38.462 0.00 0.00 0.00 4.40
7488 7610 5.179368 AGACGGATTTCATATAAACATGCCG 59.821 40.000 0.00 0.00 35.34 5.69
7489 7611 5.060506 ACGGATTTCATATAAACATGCCGA 58.939 37.500 0.00 0.00 34.16 5.54
7490 7612 5.529430 ACGGATTTCATATAAACATGCCGAA 59.471 36.000 0.00 0.00 34.16 4.30
7491 7613 6.206634 ACGGATTTCATATAAACATGCCGAAT 59.793 34.615 0.00 0.00 34.16 3.34
7492 7614 7.083858 CGGATTTCATATAAACATGCCGAATT 58.916 34.615 0.00 0.00 32.71 2.17
7493 7615 7.594758 CGGATTTCATATAAACATGCCGAATTT 59.405 33.333 0.00 0.00 32.71 1.82
7494 7616 8.915654 GGATTTCATATAAACATGCCGAATTTC 58.084 33.333 0.00 0.00 0.00 2.17
7495 7617 9.462174 GATTTCATATAAACATGCCGAATTTCA 57.538 29.630 0.00 0.00 0.00 2.69
7496 7618 9.985730 ATTTCATATAAACATGCCGAATTTCAT 57.014 25.926 0.00 0.00 0.00 2.57
7579 7738 2.798148 GATTGTCGGTGCCGTTCCCT 62.798 60.000 10.60 0.00 40.74 4.20
7587 7746 2.137528 TGCCGTTCCCTGTGTCTGA 61.138 57.895 0.00 0.00 0.00 3.27
7792 7960 2.124507 TTTCCTGGGACAAGAGCGGG 62.125 60.000 0.00 0.00 38.70 6.13
7793 7961 3.322466 CCTGGGACAAGAGCGGGT 61.322 66.667 0.00 0.00 38.70 5.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 4.735578 GCGTTTATATCACTCGAGGAACCA 60.736 45.833 18.41 0.00 0.00 3.67
41 42 1.138036 TCGATCATCGACGGCGTTT 59.862 52.632 16.19 0.00 44.82 3.60
133 134 1.369091 CGAAATGCCACTCCTTCCCG 61.369 60.000 0.00 0.00 0.00 5.14
162 163 2.096496 CCTCGCATCTAAAACTGCCAAG 59.904 50.000 0.00 0.00 34.89 3.61
235 239 2.361438 TCAAACGGTGGCGGTTTTAAAT 59.639 40.909 2.75 0.00 35.33 1.40
294 299 1.300963 GTGAGGAGGATGGCAAGCA 59.699 57.895 0.00 0.00 0.00 3.91
306 311 0.388134 GCGAACGTAAGCTGTGAGGA 60.388 55.000 7.78 0.00 45.62 3.71
317 322 2.605818 GCAATGTTATCTGGCGAACGTA 59.394 45.455 0.00 0.00 0.00 3.57
337 342 2.994186 TGACCCCTTAGAATTACGGC 57.006 50.000 0.00 0.00 0.00 5.68
365 370 8.909708 TGCCATTTTCGTTTAAGAAGAATATG 57.090 30.769 10.27 10.27 34.99 1.78
388 401 0.526739 AAAACCGGCAGAAACGTTGC 60.527 50.000 0.00 0.00 40.80 4.17
400 413 0.037419 CCAATCCTTGCCAAAACCGG 60.037 55.000 0.00 0.00 0.00 5.28
411 424 4.313020 AAGATGAAGACTGCCAATCCTT 57.687 40.909 0.00 0.00 0.00 3.36
413 426 4.012374 TCAAAGATGAAGACTGCCAATCC 58.988 43.478 0.00 0.00 30.99 3.01
415 428 4.401022 TGTCAAAGATGAAGACTGCCAAT 58.599 39.130 0.00 0.00 37.30 3.16
416 429 3.819368 TGTCAAAGATGAAGACTGCCAA 58.181 40.909 0.00 0.00 37.30 4.52
460 479 2.166664 AGCCGCGTCTCTTCTCTTTAAT 59.833 45.455 4.92 0.00 0.00 1.40
472 491 1.519455 GTGCAGATTAGCCGCGTCT 60.519 57.895 4.92 0.00 0.00 4.18
473 492 2.526120 GGTGCAGATTAGCCGCGTC 61.526 63.158 4.92 0.00 0.00 5.19
475 494 3.272334 GGGTGCAGATTAGCCGCG 61.272 66.667 0.00 0.00 0.00 6.46
478 497 0.107654 AGTTCGGGTGCAGATTAGCC 60.108 55.000 0.00 0.00 0.00 3.93
479 498 1.291132 GAGTTCGGGTGCAGATTAGC 58.709 55.000 0.00 0.00 0.00 3.09
480 499 2.672961 TGAGTTCGGGTGCAGATTAG 57.327 50.000 0.00 0.00 0.00 1.73
481 500 4.631131 CATATGAGTTCGGGTGCAGATTA 58.369 43.478 0.00 0.00 0.00 1.75
482 501 3.470709 CATATGAGTTCGGGTGCAGATT 58.529 45.455 0.00 0.00 0.00 2.40
483 502 2.808202 GCATATGAGTTCGGGTGCAGAT 60.808 50.000 6.97 0.00 33.09 2.90
484 503 1.473257 GCATATGAGTTCGGGTGCAGA 60.473 52.381 6.97 0.00 33.09 4.26
485 504 0.940126 GCATATGAGTTCGGGTGCAG 59.060 55.000 6.97 0.00 33.09 4.41
486 505 0.541392 AGCATATGAGTTCGGGTGCA 59.459 50.000 6.97 0.00 35.17 4.57
487 506 1.221414 GAGCATATGAGTTCGGGTGC 58.779 55.000 6.97 0.00 0.00 5.01
488 507 1.541233 GGGAGCATATGAGTTCGGGTG 60.541 57.143 6.97 0.00 0.00 4.61
489 508 0.759346 GGGAGCATATGAGTTCGGGT 59.241 55.000 6.97 0.00 0.00 5.28
490 509 0.319900 CGGGAGCATATGAGTTCGGG 60.320 60.000 6.97 0.00 0.00 5.14
491 510 3.201342 CGGGAGCATATGAGTTCGG 57.799 57.895 6.97 0.00 0.00 4.30
504 523 3.242413 CGATTTTACTGTTCATGCGGGAG 60.242 47.826 0.00 0.00 0.00 4.30
505 524 2.675844 CGATTTTACTGTTCATGCGGGA 59.324 45.455 0.00 0.00 0.00 5.14
506 525 2.675844 TCGATTTTACTGTTCATGCGGG 59.324 45.455 0.00 0.00 0.00 6.13
507 526 4.335082 TTCGATTTTACTGTTCATGCGG 57.665 40.909 0.00 0.00 0.00 5.69
508 527 6.667981 TTTTTCGATTTTACTGTTCATGCG 57.332 33.333 0.00 0.00 0.00 4.73
553 572 9.487790 AACTTTTGTCAATGTTTCTCTCAAAAA 57.512 25.926 0.00 0.00 34.51 1.94
554 573 9.139174 GAACTTTTGTCAATGTTTCTCTCAAAA 57.861 29.630 6.10 0.00 31.96 2.44
555 574 8.522830 AGAACTTTTGTCAATGTTTCTCTCAAA 58.477 29.630 6.10 0.00 31.96 2.69
556 575 8.055279 AGAACTTTTGTCAATGTTTCTCTCAA 57.945 30.769 6.10 0.00 31.96 3.02
557 576 7.630242 AGAACTTTTGTCAATGTTTCTCTCA 57.370 32.000 6.10 0.00 31.96 3.27
558 577 9.439537 GTTAGAACTTTTGTCAATGTTTCTCTC 57.560 33.333 6.42 0.97 31.96 3.20
559 578 9.178758 AGTTAGAACTTTTGTCAATGTTTCTCT 57.821 29.630 6.42 3.36 35.21 3.10
560 579 9.226345 CAGTTAGAACTTTTGTCAATGTTTCTC 57.774 33.333 6.42 0.00 37.08 2.87
561 580 7.702348 GCAGTTAGAACTTTTGTCAATGTTTCT 59.298 33.333 6.10 6.96 37.08 2.52
562 581 7.043391 GGCAGTTAGAACTTTTGTCAATGTTTC 60.043 37.037 6.10 1.04 37.08 2.78
563 582 6.756542 GGCAGTTAGAACTTTTGTCAATGTTT 59.243 34.615 6.10 0.00 37.08 2.83
564 583 6.096846 AGGCAGTTAGAACTTTTGTCAATGTT 59.903 34.615 4.72 4.72 37.08 2.71
565 584 5.594317 AGGCAGTTAGAACTTTTGTCAATGT 59.406 36.000 0.00 0.00 37.08 2.71
566 585 5.916883 CAGGCAGTTAGAACTTTTGTCAATG 59.083 40.000 0.00 0.00 37.08 2.82
567 586 5.507985 GCAGGCAGTTAGAACTTTTGTCAAT 60.508 40.000 0.00 0.00 37.08 2.57
568 587 4.202010 GCAGGCAGTTAGAACTTTTGTCAA 60.202 41.667 0.00 0.00 37.08 3.18
569 588 3.315191 GCAGGCAGTTAGAACTTTTGTCA 59.685 43.478 0.00 0.00 37.08 3.58
570 589 3.315191 TGCAGGCAGTTAGAACTTTTGTC 59.685 43.478 0.00 0.00 37.08 3.18
571 590 3.287222 TGCAGGCAGTTAGAACTTTTGT 58.713 40.909 0.00 0.00 37.08 2.83
572 591 3.988379 TGCAGGCAGTTAGAACTTTTG 57.012 42.857 0.00 0.00 37.08 2.44
573 592 5.337578 TTTTGCAGGCAGTTAGAACTTTT 57.662 34.783 0.00 0.00 37.08 2.27
574 593 5.337578 TTTTTGCAGGCAGTTAGAACTTT 57.662 34.783 0.00 0.00 37.08 2.66
575 594 5.535753 ATTTTTGCAGGCAGTTAGAACTT 57.464 34.783 0.00 0.00 37.08 2.66
576 595 5.532557 GAATTTTTGCAGGCAGTTAGAACT 58.467 37.500 0.00 0.00 40.60 3.01
577 596 4.382754 CGAATTTTTGCAGGCAGTTAGAAC 59.617 41.667 0.00 0.00 0.00 3.01
578 597 4.037446 ACGAATTTTTGCAGGCAGTTAGAA 59.963 37.500 0.00 0.00 0.00 2.10
579 598 3.568007 ACGAATTTTTGCAGGCAGTTAGA 59.432 39.130 0.00 0.00 0.00 2.10
580 599 3.900941 ACGAATTTTTGCAGGCAGTTAG 58.099 40.909 0.00 0.00 0.00 2.34
581 600 3.316588 TGACGAATTTTTGCAGGCAGTTA 59.683 39.130 0.00 0.00 0.00 2.24
582 601 2.100584 TGACGAATTTTTGCAGGCAGTT 59.899 40.909 0.00 0.00 0.00 3.16
583 602 1.680735 TGACGAATTTTTGCAGGCAGT 59.319 42.857 0.00 0.00 0.00 4.40
584 603 2.420628 TGACGAATTTTTGCAGGCAG 57.579 45.000 0.00 0.00 0.00 4.85
585 604 2.295629 TCATGACGAATTTTTGCAGGCA 59.704 40.909 0.00 0.00 0.00 4.75
586 605 2.945278 TCATGACGAATTTTTGCAGGC 58.055 42.857 0.00 0.00 0.00 4.85
587 606 5.634439 TGATTTCATGACGAATTTTTGCAGG 59.366 36.000 0.00 0.00 32.32 4.85
588 607 6.144241 TGTGATTTCATGACGAATTTTTGCAG 59.856 34.615 0.00 0.00 32.32 4.41
589 608 5.981915 TGTGATTTCATGACGAATTTTTGCA 59.018 32.000 0.00 0.00 32.32 4.08
590 609 6.450845 TGTGATTTCATGACGAATTTTTGC 57.549 33.333 0.00 0.00 32.32 3.68
591 610 8.164153 GGAATGTGATTTCATGACGAATTTTTG 58.836 33.333 0.00 0.00 32.32 2.44
592 611 8.090214 AGGAATGTGATTTCATGACGAATTTTT 58.910 29.630 0.00 0.00 32.32 1.94
593 612 7.605449 AGGAATGTGATTTCATGACGAATTTT 58.395 30.769 0.00 0.00 32.32 1.82
594 613 7.161773 AGGAATGTGATTTCATGACGAATTT 57.838 32.000 0.00 0.00 32.32 1.82
595 614 6.764308 AGGAATGTGATTTCATGACGAATT 57.236 33.333 0.00 0.00 32.32 2.17
596 615 7.275183 TCTAGGAATGTGATTTCATGACGAAT 58.725 34.615 0.00 0.00 32.32 3.34
597 616 6.639563 TCTAGGAATGTGATTTCATGACGAA 58.360 36.000 0.00 0.00 0.00 3.85
598 617 6.220726 TCTAGGAATGTGATTTCATGACGA 57.779 37.500 0.00 0.00 0.00 4.20
599 618 6.018425 CCTTCTAGGAATGTGATTTCATGACG 60.018 42.308 0.00 0.00 37.67 4.35
600 619 6.238593 GCCTTCTAGGAATGTGATTTCATGAC 60.239 42.308 0.00 0.00 37.67 3.06
601 620 5.824624 GCCTTCTAGGAATGTGATTTCATGA 59.175 40.000 0.00 0.00 37.67 3.07
602 621 5.277683 CGCCTTCTAGGAATGTGATTTCATG 60.278 44.000 0.00 0.00 37.67 3.07
603 622 4.818546 CGCCTTCTAGGAATGTGATTTCAT 59.181 41.667 0.00 0.00 37.67 2.57
604 623 4.191544 CGCCTTCTAGGAATGTGATTTCA 58.808 43.478 0.00 0.00 37.67 2.69
605 624 4.034510 CACGCCTTCTAGGAATGTGATTTC 59.965 45.833 0.00 0.00 37.67 2.17
606 625 3.941483 CACGCCTTCTAGGAATGTGATTT 59.059 43.478 0.00 0.00 37.67 2.17
607 626 3.535561 CACGCCTTCTAGGAATGTGATT 58.464 45.455 0.00 0.00 37.67 2.57
608 627 2.158900 CCACGCCTTCTAGGAATGTGAT 60.159 50.000 12.05 0.00 37.67 3.06
609 628 1.207089 CCACGCCTTCTAGGAATGTGA 59.793 52.381 12.05 0.00 37.67 3.58
610 629 1.656652 CCACGCCTTCTAGGAATGTG 58.343 55.000 0.00 2.20 37.67 3.21
611 630 0.107654 GCCACGCCTTCTAGGAATGT 60.108 55.000 0.00 0.00 37.67 2.71
612 631 0.107703 TGCCACGCCTTCTAGGAATG 60.108 55.000 0.00 0.00 37.67 2.67
613 632 0.618458 TTGCCACGCCTTCTAGGAAT 59.382 50.000 0.00 0.00 37.67 3.01
614 633 0.398696 TTTGCCACGCCTTCTAGGAA 59.601 50.000 0.00 0.00 37.67 3.36
615 634 0.398696 TTTTGCCACGCCTTCTAGGA 59.601 50.000 0.00 0.00 37.67 2.94
616 635 1.243902 TTTTTGCCACGCCTTCTAGG 58.756 50.000 0.00 0.00 38.80 3.02
633 652 8.825667 TTTTCAGAGTACTGTTTTTGCTTTTT 57.174 26.923 0.00 0.00 43.81 1.94
634 653 8.825667 TTTTTCAGAGTACTGTTTTTGCTTTT 57.174 26.923 0.00 0.00 43.81 2.27
635 654 7.063426 GCTTTTTCAGAGTACTGTTTTTGCTTT 59.937 33.333 0.00 0.00 43.81 3.51
636 655 6.531594 GCTTTTTCAGAGTACTGTTTTTGCTT 59.468 34.615 0.00 0.00 43.81 3.91
637 656 6.036470 GCTTTTTCAGAGTACTGTTTTTGCT 58.964 36.000 0.00 0.00 43.81 3.91
638 657 6.036470 AGCTTTTTCAGAGTACTGTTTTTGC 58.964 36.000 0.00 0.00 43.81 3.68
639 658 8.398665 AGTAGCTTTTTCAGAGTACTGTTTTTG 58.601 33.333 0.00 0.00 43.81 2.44
640 659 8.507524 AGTAGCTTTTTCAGAGTACTGTTTTT 57.492 30.769 0.00 0.00 43.81 1.94
641 660 8.507524 AAGTAGCTTTTTCAGAGTACTGTTTT 57.492 30.769 0.00 0.00 43.81 2.43
642 661 8.507524 AAAGTAGCTTTTTCAGAGTACTGTTT 57.492 30.769 0.00 0.00 36.62 2.83
643 662 7.769044 TGAAAGTAGCTTTTTCAGAGTACTGTT 59.231 33.333 17.30 0.00 39.05 3.16
644 663 7.272978 TGAAAGTAGCTTTTTCAGAGTACTGT 58.727 34.615 17.30 0.00 39.05 3.55
645 664 7.715265 TGAAAGTAGCTTTTTCAGAGTACTG 57.285 36.000 17.30 0.00 39.05 2.74
646 665 8.613482 GTTTGAAAGTAGCTTTTTCAGAGTACT 58.387 33.333 19.21 0.00 43.22 2.73
647 666 7.583040 CGTTTGAAAGTAGCTTTTTCAGAGTAC 59.417 37.037 19.21 15.67 43.22 2.73
648 667 7.627340 CGTTTGAAAGTAGCTTTTTCAGAGTA 58.373 34.615 19.21 8.08 43.22 2.59
649 668 6.487103 CGTTTGAAAGTAGCTTTTTCAGAGT 58.513 36.000 19.21 0.00 43.22 3.24
650 669 5.396654 GCGTTTGAAAGTAGCTTTTTCAGAG 59.603 40.000 19.21 16.17 43.22 3.35
651 670 5.163703 TGCGTTTGAAAGTAGCTTTTTCAGA 60.164 36.000 19.21 15.01 43.22 3.27
652 671 5.034152 TGCGTTTGAAAGTAGCTTTTTCAG 58.966 37.500 19.21 12.77 43.22 3.02
653 672 4.987832 TGCGTTTGAAAGTAGCTTTTTCA 58.012 34.783 17.30 17.30 41.40 2.69
654 673 6.510746 AATGCGTTTGAAAGTAGCTTTTTC 57.489 33.333 13.56 13.56 33.49 2.29
655 674 6.902224 AAATGCGTTTGAAAGTAGCTTTTT 57.098 29.167 2.32 0.00 33.49 1.94
656 675 6.902224 AAAATGCGTTTGAAAGTAGCTTTT 57.098 29.167 4.29 0.00 36.97 2.27
668 687 3.114809 TCAGTGCTTCAAAATGCGTTTG 58.885 40.909 4.29 5.51 46.86 2.93
669 688 3.435105 TCAGTGCTTCAAAATGCGTTT 57.565 38.095 0.00 0.00 0.00 3.60
670 689 3.435105 TTCAGTGCTTCAAAATGCGTT 57.565 38.095 0.00 0.00 0.00 4.84
671 690 3.648339 ATTCAGTGCTTCAAAATGCGT 57.352 38.095 0.00 0.00 0.00 5.24
672 691 4.209703 ACAAATTCAGTGCTTCAAAATGCG 59.790 37.500 0.00 0.00 0.00 4.73
673 692 5.662211 ACAAATTCAGTGCTTCAAAATGC 57.338 34.783 0.00 0.00 0.00 3.56
674 693 8.898983 AAAAACAAATTCAGTGCTTCAAAATG 57.101 26.923 0.00 0.00 0.00 2.32
697 716 2.025155 TCTTGTAAGGCGTGGCAAAAA 58.975 42.857 0.00 0.00 0.00 1.94
698 717 1.681538 TCTTGTAAGGCGTGGCAAAA 58.318 45.000 0.00 0.00 0.00 2.44
699 718 1.681538 TTCTTGTAAGGCGTGGCAAA 58.318 45.000 0.00 0.00 0.00 3.68
700 719 1.539388 CATTCTTGTAAGGCGTGGCAA 59.461 47.619 0.00 0.00 0.00 4.52
701 720 1.164411 CATTCTTGTAAGGCGTGGCA 58.836 50.000 0.00 0.00 0.00 4.92
702 721 1.135689 CACATTCTTGTAAGGCGTGGC 60.136 52.381 0.00 0.00 33.76 5.01
703 722 2.422597 TCACATTCTTGTAAGGCGTGG 58.577 47.619 0.00 0.00 33.76 4.94
704 723 4.685169 AATCACATTCTTGTAAGGCGTG 57.315 40.909 0.00 0.00 33.76 5.34
705 724 4.759693 TGAAATCACATTCTTGTAAGGCGT 59.240 37.500 0.00 0.00 33.76 5.68
706 725 5.295431 TGAAATCACATTCTTGTAAGGCG 57.705 39.130 0.00 0.00 33.76 5.52
707 726 6.855836 TCATGAAATCACATTCTTGTAAGGC 58.144 36.000 0.00 0.00 36.43 4.35
708 727 8.680001 TCATCATGAAATCACATTCTTGTAAGG 58.320 33.333 0.00 0.00 36.43 2.69
712 731 9.938280 AAATTCATCATGAAATCACATTCTTGT 57.062 25.926 3.63 0.00 40.12 3.16
716 735 9.485591 GCAAAAATTCATCATGAAATCACATTC 57.514 29.630 3.63 0.00 40.12 2.67
717 736 9.004717 TGCAAAAATTCATCATGAAATCACATT 57.995 25.926 3.63 0.00 40.12 2.71
718 737 8.554835 TGCAAAAATTCATCATGAAATCACAT 57.445 26.923 3.63 0.00 40.12 3.21
719 738 7.118535 CCTGCAAAAATTCATCATGAAATCACA 59.881 33.333 3.63 0.00 40.12 3.58
720 739 7.461107 CCTGCAAAAATTCATCATGAAATCAC 58.539 34.615 3.63 0.00 40.12 3.06
721 740 6.092944 GCCTGCAAAAATTCATCATGAAATCA 59.907 34.615 3.63 0.00 40.12 2.57
722 741 6.092944 TGCCTGCAAAAATTCATCATGAAATC 59.907 34.615 3.63 0.00 40.12 2.17
723 742 5.941058 TGCCTGCAAAAATTCATCATGAAAT 59.059 32.000 3.63 0.00 40.12 2.17
724 743 5.179742 GTGCCTGCAAAAATTCATCATGAAA 59.820 36.000 3.63 0.00 40.12 2.69
725 744 4.691685 GTGCCTGCAAAAATTCATCATGAA 59.308 37.500 1.59 1.59 41.09 2.57
726 745 4.020928 AGTGCCTGCAAAAATTCATCATGA 60.021 37.500 0.00 0.00 0.00 3.07
727 746 4.250464 AGTGCCTGCAAAAATTCATCATG 58.750 39.130 0.00 0.00 0.00 3.07
728 747 4.546829 AGTGCCTGCAAAAATTCATCAT 57.453 36.364 0.00 0.00 0.00 2.45
729 748 4.339872 AAGTGCCTGCAAAAATTCATCA 57.660 36.364 0.00 0.00 0.00 3.07
730 749 5.713025 TCTAAGTGCCTGCAAAAATTCATC 58.287 37.500 0.00 0.00 0.00 2.92
731 750 5.726980 TCTAAGTGCCTGCAAAAATTCAT 57.273 34.783 0.00 0.00 0.00 2.57
732 751 5.068987 AGTTCTAAGTGCCTGCAAAAATTCA 59.931 36.000 0.00 0.00 0.00 2.57
733 752 5.532557 AGTTCTAAGTGCCTGCAAAAATTC 58.467 37.500 0.00 0.00 0.00 2.17
734 753 5.535753 AGTTCTAAGTGCCTGCAAAAATT 57.464 34.783 0.00 0.00 0.00 1.82
735 754 5.535753 AAGTTCTAAGTGCCTGCAAAAAT 57.464 34.783 0.00 0.00 0.00 1.82
736 755 5.337578 AAAGTTCTAAGTGCCTGCAAAAA 57.662 34.783 0.00 0.00 0.00 1.94
737 756 5.108517 CAAAAGTTCTAAGTGCCTGCAAAA 58.891 37.500 0.00 0.00 0.00 2.44
738 757 4.159506 ACAAAAGTTCTAAGTGCCTGCAAA 59.840 37.500 0.00 0.00 0.00 3.68
739 758 3.699038 ACAAAAGTTCTAAGTGCCTGCAA 59.301 39.130 0.00 0.00 0.00 4.08
740 759 3.287222 ACAAAAGTTCTAAGTGCCTGCA 58.713 40.909 0.00 0.00 0.00 4.41
741 760 3.315191 TGACAAAAGTTCTAAGTGCCTGC 59.685 43.478 0.00 0.00 0.00 4.85
742 761 5.499139 TTGACAAAAGTTCTAAGTGCCTG 57.501 39.130 0.00 0.00 0.00 4.85
743 762 5.594317 ACATTGACAAAAGTTCTAAGTGCCT 59.406 36.000 0.00 0.00 0.00 4.75
744 763 5.831997 ACATTGACAAAAGTTCTAAGTGCC 58.168 37.500 0.00 0.00 0.00 5.01
745 764 7.702348 AGAAACATTGACAAAAGTTCTAAGTGC 59.298 33.333 9.09 0.00 0.00 4.40
746 765 9.226345 GAGAAACATTGACAAAAGTTCTAAGTG 57.774 33.333 9.09 0.00 0.00 3.16
747 766 9.178758 AGAGAAACATTGACAAAAGTTCTAAGT 57.821 29.630 9.09 0.00 0.00 2.24
799 818 6.037098 CCACATGAACAGTAAAACCGAAAAA 58.963 36.000 0.00 0.00 0.00 1.94
800 819 5.450688 CCCACATGAACAGTAAAACCGAAAA 60.451 40.000 0.00 0.00 0.00 2.29
801 820 4.036971 CCCACATGAACAGTAAAACCGAAA 59.963 41.667 0.00 0.00 0.00 3.46
802 821 3.566322 CCCACATGAACAGTAAAACCGAA 59.434 43.478 0.00 0.00 0.00 4.30
803 822 3.142951 CCCACATGAACAGTAAAACCGA 58.857 45.455 0.00 0.00 0.00 4.69
804 823 3.142951 TCCCACATGAACAGTAAAACCG 58.857 45.455 0.00 0.00 0.00 4.44
805 824 3.057526 GCTCCCACATGAACAGTAAAACC 60.058 47.826 0.00 0.00 0.00 3.27
806 825 3.568007 TGCTCCCACATGAACAGTAAAAC 59.432 43.478 0.00 0.00 0.00 2.43
807 826 3.826524 TGCTCCCACATGAACAGTAAAA 58.173 40.909 0.00 0.00 0.00 1.52
808 827 3.500448 TGCTCCCACATGAACAGTAAA 57.500 42.857 0.00 0.00 0.00 2.01
809 828 3.719268 ATGCTCCCACATGAACAGTAA 57.281 42.857 0.00 0.00 0.00 2.24
810 829 4.408596 TCATATGCTCCCACATGAACAGTA 59.591 41.667 0.00 0.00 32.24 2.74
811 830 3.200605 TCATATGCTCCCACATGAACAGT 59.799 43.478 0.00 0.00 32.24 3.55
812 831 3.812262 TCATATGCTCCCACATGAACAG 58.188 45.455 0.00 0.00 32.24 3.16
813 832 3.812262 CTCATATGCTCCCACATGAACA 58.188 45.455 0.00 0.00 34.69 3.18
814 833 2.551459 GCTCATATGCTCCCACATGAAC 59.449 50.000 0.00 0.00 34.69 3.18
815 834 2.440627 AGCTCATATGCTCCCACATGAA 59.559 45.455 0.00 0.00 39.34 2.57
816 835 2.052468 AGCTCATATGCTCCCACATGA 58.948 47.619 0.00 0.00 39.34 3.07
817 836 2.563261 AGCTCATATGCTCCCACATG 57.437 50.000 0.00 0.00 39.34 3.21
826 845 1.613925 TCTACACCCGAGCTCATATGC 59.386 52.381 15.40 0.00 0.00 3.14
827 846 4.240888 CATTCTACACCCGAGCTCATATG 58.759 47.826 15.40 10.33 0.00 1.78
828 847 3.259374 CCATTCTACACCCGAGCTCATAT 59.741 47.826 15.40 0.00 0.00 1.78
829 848 2.628178 CCATTCTACACCCGAGCTCATA 59.372 50.000 15.40 0.00 0.00 2.15
830 849 1.414181 CCATTCTACACCCGAGCTCAT 59.586 52.381 15.40 0.00 0.00 2.90
831 850 0.824109 CCATTCTACACCCGAGCTCA 59.176 55.000 15.40 0.00 0.00 4.26
832 851 1.112113 TCCATTCTACACCCGAGCTC 58.888 55.000 2.73 2.73 0.00 4.09
833 852 0.824759 GTCCATTCTACACCCGAGCT 59.175 55.000 0.00 0.00 0.00 4.09
834 853 0.824759 AGTCCATTCTACACCCGAGC 59.175 55.000 0.00 0.00 0.00 5.03
835 854 3.611766 AAAGTCCATTCTACACCCGAG 57.388 47.619 0.00 0.00 0.00 4.63
836 855 3.615592 CGAAAAGTCCATTCTACACCCGA 60.616 47.826 0.00 0.00 0.00 5.14
837 856 2.671396 CGAAAAGTCCATTCTACACCCG 59.329 50.000 0.00 0.00 0.00 5.28
838 857 3.933332 CTCGAAAAGTCCATTCTACACCC 59.067 47.826 0.00 0.00 0.00 4.61
839 858 3.933332 CCTCGAAAAGTCCATTCTACACC 59.067 47.826 0.00 0.00 0.00 4.16
840 859 4.817517 TCCTCGAAAAGTCCATTCTACAC 58.182 43.478 0.00 0.00 0.00 2.90
841 860 4.081642 CCTCCTCGAAAAGTCCATTCTACA 60.082 45.833 0.00 0.00 0.00 2.74
842 861 4.434520 CCTCCTCGAAAAGTCCATTCTAC 58.565 47.826 0.00 0.00 0.00 2.59
843 862 3.118738 GCCTCCTCGAAAAGTCCATTCTA 60.119 47.826 0.00 0.00 0.00 2.10
844 863 2.355209 GCCTCCTCGAAAAGTCCATTCT 60.355 50.000 0.00 0.00 0.00 2.40
845 864 2.010497 GCCTCCTCGAAAAGTCCATTC 58.990 52.381 0.00 0.00 0.00 2.67
846 865 1.351017 TGCCTCCTCGAAAAGTCCATT 59.649 47.619 0.00 0.00 0.00 3.16
847 866 0.984230 TGCCTCCTCGAAAAGTCCAT 59.016 50.000 0.00 0.00 0.00 3.41
848 867 0.762418 TTGCCTCCTCGAAAAGTCCA 59.238 50.000 0.00 0.00 0.00 4.02
849 868 1.535896 GTTTGCCTCCTCGAAAAGTCC 59.464 52.381 0.00 0.00 0.00 3.85
850 869 1.194772 CGTTTGCCTCCTCGAAAAGTC 59.805 52.381 0.00 0.00 0.00 3.01
851 870 1.226746 CGTTTGCCTCCTCGAAAAGT 58.773 50.000 0.00 0.00 0.00 2.66
852 871 0.110192 GCGTTTGCCTCCTCGAAAAG 60.110 55.000 0.00 0.00 33.98 2.27
853 872 0.534203 AGCGTTTGCCTCCTCGAAAA 60.534 50.000 0.00 0.00 44.31 2.29
854 873 0.534203 AAGCGTTTGCCTCCTCGAAA 60.534 50.000 0.00 0.00 44.31 3.46
855 874 0.949105 GAAGCGTTTGCCTCCTCGAA 60.949 55.000 0.00 0.00 44.31 3.71
856 875 1.374252 GAAGCGTTTGCCTCCTCGA 60.374 57.895 0.00 0.00 44.31 4.04
857 876 0.951040 AAGAAGCGTTTGCCTCCTCG 60.951 55.000 0.00 0.00 44.31 4.63
861 880 1.239347 AAGGAAGAAGCGTTTGCCTC 58.761 50.000 0.00 0.00 44.31 4.70
896 915 1.657181 CCAAAACAAGCGTGCGTCC 60.657 57.895 0.00 0.00 0.00 4.79
950 980 2.009774 GGCTGACTTCGCACATTATGT 58.990 47.619 0.00 0.00 0.00 2.29
951 981 2.009051 TGGCTGACTTCGCACATTATG 58.991 47.619 0.00 0.00 0.00 1.90
952 982 2.283298 CTGGCTGACTTCGCACATTAT 58.717 47.619 0.00 0.00 0.00 1.28
953 983 1.675714 CCTGGCTGACTTCGCACATTA 60.676 52.381 0.00 0.00 0.00 1.90
954 984 0.957395 CCTGGCTGACTTCGCACATT 60.957 55.000 0.00 0.00 0.00 2.71
955 985 1.376424 CCTGGCTGACTTCGCACAT 60.376 57.895 0.00 0.00 0.00 3.21
956 986 2.031012 CCTGGCTGACTTCGCACA 59.969 61.111 0.00 0.00 0.00 4.57
957 987 3.426568 GCCTGGCTGACTTCGCAC 61.427 66.667 12.43 0.00 0.00 5.34
977 1007 0.824109 CTAGGTCGGCTGTTGGATCA 59.176 55.000 0.00 0.00 0.00 2.92
999 1045 2.017049 GCCAGGTAATGTGATGTGTCC 58.983 52.381 0.00 0.00 0.00 4.02
1412 1480 1.100510 AGCGTGCCACTTCTATACGA 58.899 50.000 0.00 0.00 36.94 3.43
1413 1481 1.200483 CAGCGTGCCACTTCTATACG 58.800 55.000 0.00 0.00 37.77 3.06
1414 1482 0.931005 GCAGCGTGCCACTTCTATAC 59.069 55.000 0.00 0.00 37.42 1.47
1415 1483 0.527600 CGCAGCGTGCCACTTCTATA 60.528 55.000 6.65 0.00 41.12 1.31
1416 1484 1.811266 CGCAGCGTGCCACTTCTAT 60.811 57.895 6.65 0.00 41.12 1.98
1426 1494 1.369209 CAAAACAGGACGCAGCGTG 60.369 57.895 28.57 14.20 41.37 5.34
1442 1520 4.084287 AGATCCTACCGACAACAGTACAA 58.916 43.478 0.00 0.00 0.00 2.41
1474 1552 3.189285 GCTCACAGCAACACACAAAAAT 58.811 40.909 0.00 0.00 41.89 1.82
1515 1596 9.399403 GGCCGAAGAAGAATTAATAATCAAATC 57.601 33.333 0.00 0.00 0.00 2.17
1590 1671 6.422400 AGACAAGAGAAGTCGAAATGAACTTC 59.578 38.462 7.06 7.06 40.84 3.01
1591 1674 6.201806 CAGACAAGAGAAGTCGAAATGAACTT 59.798 38.462 0.00 0.00 40.84 2.66
1717 1809 8.823220 ACAATATATAAAAGCAGTGGTTTCCT 57.177 30.769 19.88 12.64 31.82 3.36
1742 1834 9.534565 CCGAACTATTCATTCATCTCTTTAAGA 57.465 33.333 0.00 0.00 38.72 2.10
1743 1835 8.279103 GCCGAACTATTCATTCATCTCTTTAAG 58.721 37.037 0.00 0.00 0.00 1.85
1744 1836 7.768582 TGCCGAACTATTCATTCATCTCTTTAA 59.231 33.333 0.00 0.00 0.00 1.52
1745 1837 7.272244 TGCCGAACTATTCATTCATCTCTTTA 58.728 34.615 0.00 0.00 0.00 1.85
1746 1838 6.115446 TGCCGAACTATTCATTCATCTCTTT 58.885 36.000 0.00 0.00 0.00 2.52
1787 1879 0.175302 CAGCACAGGACTGGAGCTAG 59.825 60.000 17.17 10.53 41.72 3.42
1802 1894 1.902508 CCTCCTTGTCCTAGAACAGCA 59.097 52.381 0.00 0.00 0.00 4.41
1810 1902 1.011595 AGCTCCTCCTCCTTGTCCTA 58.988 55.000 0.00 0.00 0.00 2.94
1852 1944 3.777106 TGGCTATTCATCTGATGGACC 57.223 47.619 17.06 7.37 0.00 4.46
1856 1948 4.277672 CCCAACTTGGCTATTCATCTGATG 59.722 45.833 11.42 11.42 35.79 3.07
1857 1949 4.467769 CCCAACTTGGCTATTCATCTGAT 58.532 43.478 1.76 0.00 35.79 2.90
1899 1994 4.279420 TGAGATCCTGATAGACCACATTCG 59.721 45.833 0.00 0.00 0.00 3.34
1937 2032 0.609131 CCGGAGTCAAACCTGCCAAT 60.609 55.000 0.00 0.00 0.00 3.16
1965 2060 1.452145 TTTCAGAGGCAAACCGGCAC 61.452 55.000 0.00 0.00 44.47 5.01
2017 2112 2.145397 TCTCAGAGCGTATGGTCCTT 57.855 50.000 10.49 0.00 43.71 3.36
2244 2339 3.863142 TGTAGAGCGAGAGGGTTTTAC 57.137 47.619 0.00 0.00 0.00 2.01
2314 2409 6.403418 CCTCTTCACATGAAAGAGAAATCAGC 60.403 42.308 28.58 0.00 34.35 4.26
2344 2439 9.650539 CTGTAGTATTCTTCCATCATATTCTGG 57.349 37.037 0.00 0.00 0.00 3.86
2434 2529 2.891580 TCTTGCACTTAACGAGGTCTCT 59.108 45.455 0.00 0.00 0.00 3.10
2440 2535 6.764877 TCTAAACTTCTTGCACTTAACGAG 57.235 37.500 0.00 0.00 0.00 4.18
2571 2666 1.766461 CTGCCGGGGAGTAGGGAAT 60.766 63.158 7.49 0.00 0.00 3.01
2609 2704 5.562298 TTACCCCCACTTTCTATATCTGC 57.438 43.478 0.00 0.00 0.00 4.26
2644 2739 4.837972 AGGAAGACTCATTTAAGGCTGTC 58.162 43.478 0.00 0.00 33.85 3.51
2880 2975 2.034939 CCTGTGTCTGCATTGCTTTGAA 59.965 45.455 10.49 0.00 0.00 2.69
2888 2983 1.133823 TCCAACACCTGTGTCTGCATT 60.134 47.619 2.98 0.00 44.13 3.56
3418 3513 6.900194 ACCTGTTTGCACCATATTACTAGAT 58.100 36.000 0.00 0.00 0.00 1.98
3507 3602 2.113774 TGCACTGGGGAGCAACAG 59.886 61.111 0.00 0.00 36.21 3.16
3795 3890 5.552870 AGGGTCAATAGGCAACAGTATAG 57.447 43.478 0.00 0.00 41.41 1.31
3836 3931 3.056322 GCTCCATTTGCCACTGATCTTTT 60.056 43.478 0.00 0.00 0.00 2.27
3861 3956 7.598493 CGAAATTTTCATTTTGATACACAGGGT 59.402 33.333 9.66 0.00 36.24 4.34
3931 4026 6.988580 TCAGATCAGCATTACTTAGTCCAATG 59.011 38.462 4.08 4.08 33.69 2.82
4006 4101 5.863935 GTGCTGATTAAAAACAGGAACATCC 59.136 40.000 0.00 0.00 36.36 3.51
4077 4181 3.806380 CCCTTCAGATTCATGTCCTCAG 58.194 50.000 0.00 0.00 0.00 3.35
4341 4445 6.867816 TGGAATGAAAAACACAATATGCTCAC 59.132 34.615 0.00 0.00 0.00 3.51
4520 4624 9.528018 TGGAGATGTTCTTTTTATGAAACAAAC 57.472 29.630 0.00 1.68 0.00 2.93
4838 4942 4.503910 GCTAAAAGGGCCTACATTTTTGG 58.496 43.478 6.41 6.56 39.82 3.28
4840 4944 4.819105 GGCTAAAAGGGCCTACATTTTT 57.181 40.909 6.41 5.86 39.82 1.94
4952 5056 8.433421 TTTCCTCCAAATAGAGTTATAAAGCG 57.567 34.615 0.00 0.00 31.53 4.68
5007 5111 9.425248 AAGGATCTGATAAAATGAAAATGCCTA 57.575 29.630 0.00 0.00 0.00 3.93
5008 5112 7.909485 AGGATCTGATAAAATGAAAATGCCT 57.091 32.000 0.00 0.00 0.00 4.75
5067 5171 3.616802 GCACTACTACCTCTGACCCAAAC 60.617 52.174 0.00 0.00 0.00 2.93
5115 5219 2.853281 GCTTCACGTGCACAAACCTTAC 60.853 50.000 18.64 0.00 0.00 2.34
5116 5220 1.332375 GCTTCACGTGCACAAACCTTA 59.668 47.619 18.64 0.00 0.00 2.69
5117 5221 0.100503 GCTTCACGTGCACAAACCTT 59.899 50.000 18.64 0.00 0.00 3.50
5279 5385 0.757188 TTTGCGCCTCCCTCCAAAAA 60.757 50.000 4.18 0.00 0.00 1.94
5303 5409 4.161565 ACATTTGGATGATGCAGCTTTGAT 59.838 37.500 2.53 0.00 36.73 2.57
6028 6134 2.435372 TTGCATATGGTTCCTCACCC 57.565 50.000 4.56 0.00 46.68 4.61
6175 6283 6.054295 GGATTCAATGCTGACTGACTAATCT 58.946 40.000 0.00 0.00 0.00 2.40
6176 6284 6.054295 AGGATTCAATGCTGACTGACTAATC 58.946 40.000 0.00 0.00 0.00 1.75
6177 6285 5.999044 AGGATTCAATGCTGACTGACTAAT 58.001 37.500 0.00 0.00 0.00 1.73
6218 6326 1.147817 ACCCCCTTCTCACAAGCAAAT 59.852 47.619 0.00 0.00 0.00 2.32
6329 6437 0.106149 GTGAACGAGGGGCGGATATT 59.894 55.000 0.00 0.00 46.49 1.28
6381 6489 0.401356 TGCCCTTGACTGAAGCATCA 59.599 50.000 0.00 0.00 0.00 3.07
6448 6556 2.123726 GGGGATCAGCCGGCAATT 60.124 61.111 31.54 12.52 37.63 2.32
6599 6709 1.135689 CAAAAGCCCGCAGTACATGTC 60.136 52.381 0.00 0.00 0.00 3.06
6611 6721 1.002502 ACCGAGCCTACAAAAGCCC 60.003 57.895 0.00 0.00 0.00 5.19
6623 6733 1.204312 GCAAGAAACGTGACCGAGC 59.796 57.895 0.00 0.00 37.88 5.03
6661 6773 2.229792 GGCAGACCATCACAAGTTTCA 58.770 47.619 0.00 0.00 35.26 2.69
6684 6796 4.488879 CCAAAAATAGAAGCTTGAGTGGC 58.511 43.478 2.10 0.00 0.00 5.01
6887 6999 2.681344 GGTCCGTTCCTTATGCGAATTT 59.319 45.455 0.00 0.00 0.00 1.82
6941 7054 5.475564 TGCTCTAACAAAGTTTATGTTCCCC 59.524 40.000 0.00 0.00 41.11 4.81
6988 7101 7.545615 TGCTTGATCGGCATAATAACTATACAG 59.454 37.037 8.76 0.00 34.56 2.74
7033 7146 2.604046 ACTTGATGCCGACCTCATAC 57.396 50.000 0.00 0.00 0.00 2.39
7044 7157 5.765182 ACCTAAACTGCCATATACTTGATGC 59.235 40.000 0.00 0.00 0.00 3.91
7055 7168 6.719370 TGAACTAAATGAACCTAAACTGCCAT 59.281 34.615 0.00 0.00 0.00 4.40
7071 7184 7.657761 GGATGATATTCGTCAGGTGAACTAAAT 59.342 37.037 0.00 0.00 34.15 1.40
7083 7196 3.469008 AAAGCCGGATGATATTCGTCA 57.531 42.857 5.05 0.00 34.15 4.35
7084 7197 4.929808 ACATAAAGCCGGATGATATTCGTC 59.070 41.667 5.05 0.00 0.00 4.20
7085 7198 4.894784 ACATAAAGCCGGATGATATTCGT 58.105 39.130 5.05 0.00 0.00 3.85
7096 7210 9.581099 ACTTGAATAATTTTTACATAAAGCCGG 57.419 29.630 0.00 0.00 0.00 6.13
7156 7270 9.949174 GAATTTAACAAAAATGCAGATTTGGTT 57.051 25.926 23.20 21.07 40.09 3.67
7158 7272 8.566260 TGGAATTTAACAAAAATGCAGATTTGG 58.434 29.630 23.20 13.71 40.09 3.28
7164 7278 9.947669 TTTGAATGGAATTTAACAAAAATGCAG 57.052 25.926 0.00 0.00 36.07 4.41
7197 7313 6.791371 TCCAAACCTAACCATAAATGTACCA 58.209 36.000 0.00 0.00 0.00 3.25
7201 7317 5.128663 GCCATCCAAACCTAACCATAAATGT 59.871 40.000 0.00 0.00 0.00 2.71
7213 7329 1.000396 GAGCTGGCCATCCAAACCT 60.000 57.895 5.51 0.00 42.91 3.50
7214 7330 0.613012 AAGAGCTGGCCATCCAAACC 60.613 55.000 5.51 0.00 42.91 3.27
7265 7381 0.870393 CCCGAATCAATCAGGCATCG 59.130 55.000 0.00 0.00 0.00 3.84
7266 7382 2.149578 CTCCCGAATCAATCAGGCATC 58.850 52.381 0.00 0.00 0.00 3.91
7267 7383 1.492176 ACTCCCGAATCAATCAGGCAT 59.508 47.619 0.00 0.00 0.00 4.40
7268 7384 0.911769 ACTCCCGAATCAATCAGGCA 59.088 50.000 0.00 0.00 0.00 4.75
7269 7385 1.134401 TGACTCCCGAATCAATCAGGC 60.134 52.381 0.00 0.00 0.00 4.85
7270 7386 2.988010 TGACTCCCGAATCAATCAGG 57.012 50.000 0.00 0.00 0.00 3.86
7271 7387 3.201290 CCTTGACTCCCGAATCAATCAG 58.799 50.000 0.00 0.00 34.43 2.90
7272 7388 2.571653 ACCTTGACTCCCGAATCAATCA 59.428 45.455 0.00 0.00 34.43 2.57
7273 7389 3.268023 ACCTTGACTCCCGAATCAATC 57.732 47.619 0.00 0.00 34.43 2.67
7274 7390 3.347216 CAACCTTGACTCCCGAATCAAT 58.653 45.455 0.00 0.00 34.43 2.57
7275 7391 2.552155 CCAACCTTGACTCCCGAATCAA 60.552 50.000 0.00 0.00 33.82 2.57
7338 7456 4.812476 CGCGGACGGATGCAGGAA 62.812 66.667 0.00 0.00 34.97 3.36
7360 7478 3.395702 TCCACGGATTGGTCCCCG 61.396 66.667 3.71 3.71 46.97 5.73
7396 7518 4.257731 TGTATGCGGCTAAAGTTGAATGA 58.742 39.130 0.00 0.00 0.00 2.57
7466 7588 5.060506 TCGGCATGTTTATATGAAATCCGT 58.939 37.500 0.00 0.00 34.07 4.69
7579 7738 1.679311 GGGCTCATGGTCAGACACA 59.321 57.895 2.17 0.00 0.00 3.72
7587 7746 1.613630 AGTTCTCGGGGCTCATGGT 60.614 57.895 0.00 0.00 0.00 3.55
7670 7838 1.301716 GCGGACAACTTCAGCTCCA 60.302 57.895 0.00 0.00 41.82 3.86
7750 7918 2.203788 TGCTCCTCCACTCCCGTT 60.204 61.111 0.00 0.00 0.00 4.44
7792 7960 2.203972 TAGTGCACGGTAGGTCGCAC 62.204 60.000 12.01 11.32 45.64 5.34
7793 7961 1.972752 TAGTGCACGGTAGGTCGCA 60.973 57.895 12.01 0.00 32.68 5.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.