Multiple sequence alignment - TraesCS5D01G074000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G074000 chr5D 100.000 5467 0 0 1 5467 72913975 72908509 0.000000e+00 10096.0
1 TraesCS5D01G074000 chr5D 98.560 764 3 1 1 756 72921460 72920697 0.000000e+00 1343.0
2 TraesCS5D01G074000 chr5D 96.846 761 13 6 4 753 61112501 61113261 0.000000e+00 1262.0
3 TraesCS5D01G074000 chr5D 95.556 765 22 5 3 756 193553907 193553144 0.000000e+00 1214.0
4 TraesCS5D01G074000 chr5D 85.976 763 92 13 3 753 77683133 77683892 0.000000e+00 802.0
5 TraesCS5D01G074000 chr5D 76.297 1253 237 40 2840 4042 487006124 487007366 1.010000e-171 614.0
6 TraesCS5D01G074000 chr5D 77.336 1006 184 31 2843 3811 486908698 486907700 6.190000e-154 555.0
7 TraesCS5D01G074000 chr5D 76.931 1010 178 38 2843 3811 486898108 486897113 1.740000e-144 523.0
8 TraesCS5D01G074000 chr5D 77.449 643 119 16 3211 3834 487173112 487172477 1.450000e-95 361.0
9 TraesCS5D01G074000 chr5D 92.793 222 15 1 1144 1365 72912755 72912535 2.460000e-83 320.0
10 TraesCS5D01G074000 chr5D 92.793 222 15 1 1221 1441 72912832 72912611 2.460000e-83 320.0
11 TraesCS5D01G074000 chr5D 92.754 138 7 3 819 954 53871915 53871779 4.320000e-46 196.0
12 TraesCS5D01G074000 chr5B 95.337 3260 108 9 1144 4380 79815704 79812466 0.000000e+00 5138.0
13 TraesCS5D01G074000 chr5B 93.958 480 19 7 964 1441 79815954 79815483 0.000000e+00 717.0
14 TraesCS5D01G074000 chr5B 90.196 510 35 10 4817 5315 79812071 79811566 0.000000e+00 651.0
15 TraesCS5D01G074000 chr5B 77.855 1007 180 29 2843 3813 599122950 599121951 7.890000e-163 584.0
16 TraesCS5D01G074000 chr5B 77.527 1019 195 25 2843 3834 598755456 598754445 2.840000e-162 582.0
17 TraesCS5D01G074000 chr5B 76.789 629 139 7 1843 2468 704077021 704077645 4.050000e-91 346.0
18 TraesCS5D01G074000 chr5B 91.892 222 17 1 1221 1441 79815781 79815560 5.320000e-80 309.0
19 TraesCS5D01G074000 chr5B 94.595 148 8 0 1144 1291 79815627 79815480 4.260000e-56 230.0
20 TraesCS5D01G074000 chr5B 91.034 145 12 1 1298 1441 79815781 79815637 1.550000e-45 195.0
21 TraesCS5D01G074000 chr5B 97.222 36 1 0 4175 4210 79812459 79812424 1.640000e-05 62.1
22 TraesCS5D01G074000 chr5A 90.154 2011 129 40 1237 3197 67523598 67521607 0.000000e+00 2553.0
23 TraesCS5D01G074000 chr5A 92.451 1338 70 18 3192 4506 67521578 67520249 0.000000e+00 1882.0
24 TraesCS5D01G074000 chr5A 84.937 478 36 17 4883 5331 67519881 67519411 8.350000e-123 451.0
25 TraesCS5D01G074000 chr5A 89.347 291 28 3 1076 1365 67523682 67523394 4.030000e-96 363.0
26 TraesCS5D01G074000 chr5A 85.879 347 30 8 4509 4855 67520208 67519881 8.710000e-93 351.0
27 TraesCS5D01G074000 chr5A 88.356 146 14 3 1298 1441 67523614 67523470 7.280000e-39 172.0
28 TraesCS5D01G074000 chr5A 82.308 130 23 0 3884 4013 656714279 656714150 4.480000e-21 113.0
29 TraesCS5D01G074000 chr1D 96.978 761 12 4 3 753 440299738 440300497 0.000000e+00 1267.0
30 TraesCS5D01G074000 chr1D 96.583 761 15 4 6 756 251222327 251221568 0.000000e+00 1251.0
31 TraesCS5D01G074000 chr1D 96.583 761 15 4 3 753 440307245 440308004 0.000000e+00 1251.0
32 TraesCS5D01G074000 chr1D 86.085 848 83 20 5 819 331967082 331966237 0.000000e+00 880.0
33 TraesCS5D01G074000 chr1D 87.779 761 79 13 3 753 264194789 264195545 0.000000e+00 878.0
34 TraesCS5D01G074000 chr1D 87.779 761 79 13 3 753 264204181 264204937 0.000000e+00 878.0
35 TraesCS5D01G074000 chr1D 85.831 854 83 21 3 821 304899596 304900446 0.000000e+00 872.0
36 TraesCS5D01G074000 chr1D 87.750 751 76 14 3 740 304892072 304892819 0.000000e+00 863.0
37 TraesCS5D01G074000 chr1D 85.298 857 84 28 3 822 266537916 266538767 0.000000e+00 846.0
38 TraesCS5D01G074000 chr1D 85.561 838 84 20 15 819 340119383 340118550 0.000000e+00 843.0
39 TraesCS5D01G074000 chr1D 86.780 764 86 12 3 756 151568208 151567450 0.000000e+00 837.0
40 TraesCS5D01G074000 chr1D 85.215 859 76 24 3 821 380116134 380115287 0.000000e+00 835.0
41 TraesCS5D01G074000 chr1D 77.913 738 139 21 1747 2469 402135241 402135969 6.500000e-119 438.0
42 TraesCS5D01G074000 chr1D 94.203 138 6 2 819 954 473344483 473344620 5.550000e-50 209.0
43 TraesCS5D01G074000 chr3D 96.335 764 15 6 3 753 490546045 490546808 0.000000e+00 1243.0
44 TraesCS5D01G074000 chr3D 96.199 763 17 6 3 753 490553680 490554442 0.000000e+00 1238.0
45 TraesCS5D01G074000 chr3D 78.065 734 135 18 2840 3548 45932073 45932805 1.810000e-119 440.0
46 TraesCS5D01G074000 chr3D 77.686 605 110 15 2910 3492 557649421 557648820 4.050000e-91 346.0
47 TraesCS5D01G074000 chrUn 95.686 765 21 5 3 756 105851764 105851001 0.000000e+00 1219.0
48 TraesCS5D01G074000 chr3A 82.437 1116 179 13 1703 2809 100345412 100346519 0.000000e+00 959.0
49 TraesCS5D01G074000 chr3A 83.176 636 85 16 3192 3825 100353727 100354342 3.700000e-156 562.0
50 TraesCS5D01G074000 chr3A 89.863 365 36 1 2833 3197 100353339 100353702 8.290000e-128 468.0
51 TraesCS5D01G074000 chr2D 85.830 861 72 23 3 820 539718777 539717924 0.000000e+00 869.0
52 TraesCS5D01G074000 chr2D 85.731 855 79 26 3 819 334797800 334796951 0.000000e+00 863.0
53 TraesCS5D01G074000 chr2D 85.514 856 81 24 3 820 334790551 334789701 0.000000e+00 854.0
54 TraesCS5D01G074000 chr2D 84.866 859 88 20 6 826 99950569 99949715 0.000000e+00 828.0
55 TraesCS5D01G074000 chr2D 89.583 48 5 0 2581 2628 80657717 80657764 1.640000e-05 62.1
56 TraesCS5D01G074000 chr4D 85.579 846 87 23 3 819 241961426 241960587 0.000000e+00 854.0
57 TraesCS5D01G074000 chr4D 78.197 743 146 14 1735 2469 22572522 22573256 1.390000e-125 460.0
58 TraesCS5D01G074000 chr4D 77.089 742 150 17 1738 2469 21696511 21695780 1.420000e-110 411.0
59 TraesCS5D01G074000 chr4D 83.654 104 15 2 2531 2634 21695520 21695419 4.510000e-16 97.1
60 TraesCS5D01G074000 chr7D 86.511 771 83 17 3 757 525151695 525152460 0.000000e+00 828.0
61 TraesCS5D01G074000 chr7D 77.602 1009 186 28 2840 3814 566321336 566322338 4.750000e-160 575.0
62 TraesCS5D01G074000 chr7D 77.602 1009 184 27 2840 3813 566201747 566202748 1.710000e-159 573.0
63 TraesCS5D01G074000 chr7D 76.861 618 131 10 1855 2464 566200438 566201051 6.780000e-89 339.0
64 TraesCS5D01G074000 chr7D 83.453 139 21 2 819 955 595599840 595599978 1.600000e-25 128.0
65 TraesCS5D01G074000 chr7D 92.537 67 4 1 757 823 173239848 173239783 1.620000e-15 95.3
66 TraesCS5D01G074000 chr6D 83.815 865 91 32 3 826 167716874 167717730 0.000000e+00 776.0
67 TraesCS5D01G074000 chr6D 89.916 119 9 3 838 954 45212114 45212231 3.410000e-32 150.0
68 TraesCS5D01G074000 chr7A 78.075 1008 181 26 2840 3813 652516894 652517895 7.840000e-168 601.0
69 TraesCS5D01G074000 chr7B 76.581 1012 197 28 2843 3824 618760609 618759608 2.260000e-143 520.0
70 TraesCS5D01G074000 chr7B 76.471 1003 201 24 2840 3813 618334751 618335747 3.780000e-141 512.0
71 TraesCS5D01G074000 chr7B 76.400 1000 201 24 2843 3813 618849916 618848923 1.760000e-139 507.0
72 TraesCS5D01G074000 chr7B 76.810 953 180 26 2895 3813 617849836 617850781 1.060000e-136 497.0
73 TraesCS5D01G074000 chr7B 76.037 747 149 24 1738 2469 618762326 618761595 1.450000e-95 361.0
74 TraesCS5D01G074000 chr7B 76.037 747 149 24 1738 2469 618851632 618850901 1.450000e-95 361.0
75 TraesCS5D01G074000 chr7B 91.304 138 10 2 819 954 709847662 709847525 2.600000e-43 187.0
76 TraesCS5D01G074000 chr7B 88.966 145 7 5 819 954 65755341 65755197 2.620000e-38 171.0
77 TraesCS5D01G074000 chr1B 77.763 733 146 14 1747 2469 540137099 540137824 8.410000e-118 435.0
78 TraesCS5D01G074000 chr1B 82.486 354 60 2 2840 3192 540138218 540138570 5.320000e-80 309.0
79 TraesCS5D01G074000 chr1B 92.806 139 6 4 819 954 658358182 658358319 1.200000e-46 198.0
80 TraesCS5D01G074000 chr1A 77.902 715 143 11 1764 2469 497750301 497751009 1.090000e-116 431.0
81 TraesCS5D01G074000 chr1A 82.203 354 61 2 2840 3192 497751951 497752303 2.470000e-78 303.0
82 TraesCS5D01G074000 chr4B 77.047 745 151 17 1735 2469 32970559 32971293 1.420000e-110 411.0
83 TraesCS5D01G074000 chr4B 76.716 743 157 14 1735 2469 34539656 34540390 3.070000e-107 399.0
84 TraesCS5D01G074000 chr4B 84.158 101 14 2 2531 2631 32971553 32971651 4.510000e-16 97.1
85 TraesCS5D01G074000 chr4A 77.813 631 131 9 1843 2469 612048056 612048681 1.110000e-101 381.0
86 TraesCS5D01G074000 chr2B 92.754 138 8 2 819 954 717869130 717868993 1.200000e-46 198.0
87 TraesCS5D01G074000 chr2B 81.481 81 11 3 2549 2628 132278703 132278780 4.570000e-06 63.9
88 TraesCS5D01G074000 chr2A 72.874 682 142 32 3383 4038 81063355 81064019 1.550000e-45 195.0
89 TraesCS5D01G074000 chr6B 90.511 137 11 2 819 953 18127822 18127958 4.350000e-41 180.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G074000 chr5D 72908509 72913975 5466 True 3578.666667 10096 95.195333 1 5467 3 chr5D.!!$R7 5466
1 TraesCS5D01G074000 chr5D 72920697 72921460 763 True 1343.000000 1343 98.560000 1 756 1 chr5D.!!$R2 755
2 TraesCS5D01G074000 chr5D 61112501 61113261 760 False 1262.000000 1262 96.846000 4 753 1 chr5D.!!$F1 749
3 TraesCS5D01G074000 chr5D 193553144 193553907 763 True 1214.000000 1214 95.556000 3 756 1 chr5D.!!$R3 753
4 TraesCS5D01G074000 chr5D 77683133 77683892 759 False 802.000000 802 85.976000 3 753 1 chr5D.!!$F2 750
5 TraesCS5D01G074000 chr5D 487006124 487007366 1242 False 614.000000 614 76.297000 2840 4042 1 chr5D.!!$F3 1202
6 TraesCS5D01G074000 chr5D 486907700 486908698 998 True 555.000000 555 77.336000 2843 3811 1 chr5D.!!$R5 968
7 TraesCS5D01G074000 chr5D 486897113 486898108 995 True 523.000000 523 76.931000 2843 3811 1 chr5D.!!$R4 968
8 TraesCS5D01G074000 chr5D 487172477 487173112 635 True 361.000000 361 77.449000 3211 3834 1 chr5D.!!$R6 623
9 TraesCS5D01G074000 chr5B 79811566 79815954 4388 True 1043.157143 5138 93.462000 964 5315 7 chr5B.!!$R3 4351
10 TraesCS5D01G074000 chr5B 599121951 599122950 999 True 584.000000 584 77.855000 2843 3813 1 chr5B.!!$R2 970
11 TraesCS5D01G074000 chr5B 598754445 598755456 1011 True 582.000000 582 77.527000 2843 3834 1 chr5B.!!$R1 991
12 TraesCS5D01G074000 chr5B 704077021 704077645 624 False 346.000000 346 76.789000 1843 2468 1 chr5B.!!$F1 625
13 TraesCS5D01G074000 chr5A 67519411 67523682 4271 True 962.000000 2553 88.520667 1076 5331 6 chr5A.!!$R2 4255
14 TraesCS5D01G074000 chr1D 440299738 440300497 759 False 1267.000000 1267 96.978000 3 753 1 chr1D.!!$F7 750
15 TraesCS5D01G074000 chr1D 251221568 251222327 759 True 1251.000000 1251 96.583000 6 756 1 chr1D.!!$R2 750
16 TraesCS5D01G074000 chr1D 440307245 440308004 759 False 1251.000000 1251 96.583000 3 753 1 chr1D.!!$F8 750
17 TraesCS5D01G074000 chr1D 331966237 331967082 845 True 880.000000 880 86.085000 5 819 1 chr1D.!!$R3 814
18 TraesCS5D01G074000 chr1D 264194789 264195545 756 False 878.000000 878 87.779000 3 753 1 chr1D.!!$F1 750
19 TraesCS5D01G074000 chr1D 264204181 264204937 756 False 878.000000 878 87.779000 3 753 1 chr1D.!!$F2 750
20 TraesCS5D01G074000 chr1D 304899596 304900446 850 False 872.000000 872 85.831000 3 821 1 chr1D.!!$F5 818
21 TraesCS5D01G074000 chr1D 304892072 304892819 747 False 863.000000 863 87.750000 3 740 1 chr1D.!!$F4 737
22 TraesCS5D01G074000 chr1D 266537916 266538767 851 False 846.000000 846 85.298000 3 822 1 chr1D.!!$F3 819
23 TraesCS5D01G074000 chr1D 340118550 340119383 833 True 843.000000 843 85.561000 15 819 1 chr1D.!!$R4 804
24 TraesCS5D01G074000 chr1D 151567450 151568208 758 True 837.000000 837 86.780000 3 756 1 chr1D.!!$R1 753
25 TraesCS5D01G074000 chr1D 380115287 380116134 847 True 835.000000 835 85.215000 3 821 1 chr1D.!!$R5 818
26 TraesCS5D01G074000 chr1D 402135241 402135969 728 False 438.000000 438 77.913000 1747 2469 1 chr1D.!!$F6 722
27 TraesCS5D01G074000 chr3D 490546045 490546808 763 False 1243.000000 1243 96.335000 3 753 1 chr3D.!!$F2 750
28 TraesCS5D01G074000 chr3D 490553680 490554442 762 False 1238.000000 1238 96.199000 3 753 1 chr3D.!!$F3 750
29 TraesCS5D01G074000 chr3D 45932073 45932805 732 False 440.000000 440 78.065000 2840 3548 1 chr3D.!!$F1 708
30 TraesCS5D01G074000 chr3D 557648820 557649421 601 True 346.000000 346 77.686000 2910 3492 1 chr3D.!!$R1 582
31 TraesCS5D01G074000 chrUn 105851001 105851764 763 True 1219.000000 1219 95.686000 3 756 1 chrUn.!!$R1 753
32 TraesCS5D01G074000 chr3A 100345412 100346519 1107 False 959.000000 959 82.437000 1703 2809 1 chr3A.!!$F1 1106
33 TraesCS5D01G074000 chr3A 100353339 100354342 1003 False 515.000000 562 86.519500 2833 3825 2 chr3A.!!$F2 992
34 TraesCS5D01G074000 chr2D 539717924 539718777 853 True 869.000000 869 85.830000 3 820 1 chr2D.!!$R4 817
35 TraesCS5D01G074000 chr2D 334796951 334797800 849 True 863.000000 863 85.731000 3 819 1 chr2D.!!$R3 816
36 TraesCS5D01G074000 chr2D 334789701 334790551 850 True 854.000000 854 85.514000 3 820 1 chr2D.!!$R2 817
37 TraesCS5D01G074000 chr2D 99949715 99950569 854 True 828.000000 828 84.866000 6 826 1 chr2D.!!$R1 820
38 TraesCS5D01G074000 chr4D 241960587 241961426 839 True 854.000000 854 85.579000 3 819 1 chr4D.!!$R1 816
39 TraesCS5D01G074000 chr4D 22572522 22573256 734 False 460.000000 460 78.197000 1735 2469 1 chr4D.!!$F1 734
40 TraesCS5D01G074000 chr4D 21695419 21696511 1092 True 254.050000 411 80.371500 1738 2634 2 chr4D.!!$R2 896
41 TraesCS5D01G074000 chr7D 525151695 525152460 765 False 828.000000 828 86.511000 3 757 1 chr7D.!!$F1 754
42 TraesCS5D01G074000 chr7D 566321336 566322338 1002 False 575.000000 575 77.602000 2840 3814 1 chr7D.!!$F2 974
43 TraesCS5D01G074000 chr7D 566200438 566202748 2310 False 456.000000 573 77.231500 1855 3813 2 chr7D.!!$F4 1958
44 TraesCS5D01G074000 chr6D 167716874 167717730 856 False 776.000000 776 83.815000 3 826 1 chr6D.!!$F2 823
45 TraesCS5D01G074000 chr7A 652516894 652517895 1001 False 601.000000 601 78.075000 2840 3813 1 chr7A.!!$F1 973
46 TraesCS5D01G074000 chr7B 618334751 618335747 996 False 512.000000 512 76.471000 2840 3813 1 chr7B.!!$F2 973
47 TraesCS5D01G074000 chr7B 617849836 617850781 945 False 497.000000 497 76.810000 2895 3813 1 chr7B.!!$F1 918
48 TraesCS5D01G074000 chr7B 618759608 618762326 2718 True 440.500000 520 76.309000 1738 3824 2 chr7B.!!$R3 2086
49 TraesCS5D01G074000 chr7B 618848923 618851632 2709 True 434.000000 507 76.218500 1738 3813 2 chr7B.!!$R4 2075
50 TraesCS5D01G074000 chr1B 540137099 540138570 1471 False 372.000000 435 80.124500 1747 3192 2 chr1B.!!$F2 1445
51 TraesCS5D01G074000 chr1A 497750301 497752303 2002 False 367.000000 431 80.052500 1764 3192 2 chr1A.!!$F1 1428
52 TraesCS5D01G074000 chr4B 34539656 34540390 734 False 399.000000 399 76.716000 1735 2469 1 chr4B.!!$F1 734
53 TraesCS5D01G074000 chr4B 32970559 32971651 1092 False 254.050000 411 80.602500 1735 2631 2 chr4B.!!$F2 896
54 TraesCS5D01G074000 chr4A 612048056 612048681 625 False 381.000000 381 77.813000 1843 2469 1 chr4A.!!$F1 626

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
847 934 0.464036 TGTTCTGCAACCACTCGAGT 59.536 50.000 13.58 13.58 0.00 4.18 F
1644 1794 0.314935 CCTGTGCGGCACAATTTTCT 59.685 50.000 32.71 0.00 44.08 2.52 F
2780 4013 2.125512 GGTCGCACAGGTAGGCAG 60.126 66.667 0.00 0.00 0.00 4.85 F
3496 4814 1.186917 TTGCAGCAGGAATGGTTGGG 61.187 55.000 0.00 0.00 0.00 4.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2500 2888 0.168788 AACTCCATGCAAACATCGCG 59.831 50.0 0.0 0.0 32.87 5.87 R
3141 4398 0.815734 ACACAGATCCCTTCGTACCG 59.184 55.0 0.0 0.0 0.00 4.02 R
3881 5229 0.177141 GGCCTTGCACCGTACATCTA 59.823 55.0 0.0 0.0 0.00 1.98 R
4855 6497 0.177141 GACGTTGATGATCCGGGGAA 59.823 55.0 0.0 0.0 0.00 3.97 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
826 913 0.756294 TGGGGTGTCACAGTGTAGTG 59.244 55.000 5.12 0.00 40.85 2.74
827 914 0.756903 GGGGTGTCACAGTGTAGTGT 59.243 55.000 5.12 0.00 40.37 3.55
828 915 1.140252 GGGGTGTCACAGTGTAGTGTT 59.860 52.381 5.12 0.00 40.37 3.32
829 916 2.210116 GGGTGTCACAGTGTAGTGTTG 58.790 52.381 5.12 0.00 40.37 3.33
830 917 2.419574 GGGTGTCACAGTGTAGTGTTGT 60.420 50.000 5.12 0.00 40.37 3.32
831 918 3.267483 GGTGTCACAGTGTAGTGTTGTT 58.733 45.455 5.12 0.00 40.37 2.83
832 919 3.308866 GGTGTCACAGTGTAGTGTTGTTC 59.691 47.826 5.12 0.00 40.37 3.18
833 920 4.181578 GTGTCACAGTGTAGTGTTGTTCT 58.818 43.478 0.00 0.00 40.37 3.01
834 921 4.032900 GTGTCACAGTGTAGTGTTGTTCTG 59.967 45.833 0.00 0.00 40.37 3.02
835 922 3.001330 GTCACAGTGTAGTGTTGTTCTGC 59.999 47.826 0.00 0.00 40.37 4.26
836 923 2.935849 CACAGTGTAGTGTTGTTCTGCA 59.064 45.455 0.00 0.00 34.83 4.41
837 924 3.373748 CACAGTGTAGTGTTGTTCTGCAA 59.626 43.478 0.00 0.00 34.83 4.08
845 932 3.770625 TTGTTCTGCAACCACTCGA 57.229 47.368 0.00 0.00 31.07 4.04
846 933 1.581934 TTGTTCTGCAACCACTCGAG 58.418 50.000 11.84 11.84 31.07 4.04
847 934 0.464036 TGTTCTGCAACCACTCGAGT 59.536 50.000 13.58 13.58 0.00 4.18
848 935 1.134521 TGTTCTGCAACCACTCGAGTT 60.135 47.619 17.26 0.00 0.00 3.01
849 936 1.261619 GTTCTGCAACCACTCGAGTTG 59.738 52.381 17.26 15.82 45.92 3.16
850 937 0.464036 TCTGCAACCACTCGAGTTGT 59.536 50.000 17.26 16.59 45.14 3.32
851 938 1.134521 TCTGCAACCACTCGAGTTGTT 60.135 47.619 24.88 24.88 45.14 2.83
853 940 1.014352 GCAACCACTCGAGTTGTTGT 58.986 50.000 40.14 24.31 46.86 3.32
854 941 1.400494 GCAACCACTCGAGTTGTTGTT 59.600 47.619 40.14 27.28 46.86 2.83
855 942 2.159435 GCAACCACTCGAGTTGTTGTTT 60.159 45.455 40.14 20.12 46.86 2.83
856 943 3.672241 GCAACCACTCGAGTTGTTGTTTT 60.672 43.478 40.14 19.82 46.86 2.43
857 944 4.481463 CAACCACTCGAGTTGTTGTTTTT 58.519 39.130 36.37 16.00 42.93 1.94
858 945 4.351131 ACCACTCGAGTTGTTGTTTTTC 57.649 40.909 17.26 0.00 0.00 2.29
859 946 4.007659 ACCACTCGAGTTGTTGTTTTTCT 58.992 39.130 17.26 0.00 0.00 2.52
860 947 4.457949 ACCACTCGAGTTGTTGTTTTTCTT 59.542 37.500 17.26 0.00 0.00 2.52
861 948 5.048294 ACCACTCGAGTTGTTGTTTTTCTTT 60.048 36.000 17.26 0.00 0.00 2.52
862 949 5.861787 CCACTCGAGTTGTTGTTTTTCTTTT 59.138 36.000 17.26 0.00 0.00 2.27
863 950 6.364976 CCACTCGAGTTGTTGTTTTTCTTTTT 59.635 34.615 17.26 0.00 0.00 1.94
888 975 7.854557 TTTGATCTTCGAATCTTCATCATGT 57.145 32.000 0.00 0.00 0.00 3.21
889 976 7.854557 TTGATCTTCGAATCTTCATCATGTT 57.145 32.000 0.00 0.00 0.00 2.71
890 977 8.947055 TTGATCTTCGAATCTTCATCATGTTA 57.053 30.769 0.00 0.00 0.00 2.41
891 978 9.551734 TTGATCTTCGAATCTTCATCATGTTAT 57.448 29.630 0.00 0.00 0.00 1.89
892 979 8.985805 TGATCTTCGAATCTTCATCATGTTATG 58.014 33.333 0.00 0.00 0.00 1.90
893 980 8.899427 ATCTTCGAATCTTCATCATGTTATGT 57.101 30.769 0.00 0.00 0.00 2.29
894 981 8.722480 TCTTCGAATCTTCATCATGTTATGTT 57.278 30.769 0.00 0.00 0.00 2.71
895 982 9.166173 TCTTCGAATCTTCATCATGTTATGTTT 57.834 29.630 0.00 0.00 0.00 2.83
896 983 9.430838 CTTCGAATCTTCATCATGTTATGTTTC 57.569 33.333 0.00 0.00 0.00 2.78
897 984 7.919690 TCGAATCTTCATCATGTTATGTTTCC 58.080 34.615 0.00 0.00 0.00 3.13
898 985 6.847792 CGAATCTTCATCATGTTATGTTTCCG 59.152 38.462 0.00 0.00 0.00 4.30
899 986 7.465916 CGAATCTTCATCATGTTATGTTTCCGT 60.466 37.037 0.00 0.00 0.00 4.69
900 987 7.630242 ATCTTCATCATGTTATGTTTCCGTT 57.370 32.000 0.00 0.00 0.00 4.44
901 988 6.841119 TCTTCATCATGTTATGTTTCCGTTG 58.159 36.000 0.00 0.00 0.00 4.10
902 989 4.980590 TCATCATGTTATGTTTCCGTTGC 58.019 39.130 0.00 0.00 0.00 4.17
903 990 4.699735 TCATCATGTTATGTTTCCGTTGCT 59.300 37.500 0.00 0.00 0.00 3.91
904 991 5.182950 TCATCATGTTATGTTTCCGTTGCTT 59.817 36.000 0.00 0.00 0.00 3.91
905 992 5.041951 TCATGTTATGTTTCCGTTGCTTC 57.958 39.130 0.00 0.00 0.00 3.86
906 993 4.759693 TCATGTTATGTTTCCGTTGCTTCT 59.240 37.500 0.00 0.00 0.00 2.85
907 994 5.240623 TCATGTTATGTTTCCGTTGCTTCTT 59.759 36.000 0.00 0.00 0.00 2.52
908 995 4.854399 TGTTATGTTTCCGTTGCTTCTTG 58.146 39.130 0.00 0.00 0.00 3.02
909 996 2.422276 ATGTTTCCGTTGCTTCTTGC 57.578 45.000 0.00 0.00 43.25 4.01
910 997 1.388547 TGTTTCCGTTGCTTCTTGCT 58.611 45.000 0.00 0.00 43.37 3.91
911 998 2.566913 TGTTTCCGTTGCTTCTTGCTA 58.433 42.857 0.00 0.00 43.37 3.49
912 999 2.946329 TGTTTCCGTTGCTTCTTGCTAA 59.054 40.909 0.00 0.00 43.37 3.09
913 1000 3.378742 TGTTTCCGTTGCTTCTTGCTAAA 59.621 39.130 0.00 0.00 43.37 1.85
914 1001 4.037446 TGTTTCCGTTGCTTCTTGCTAAAT 59.963 37.500 0.00 0.00 43.37 1.40
915 1002 4.419522 TTCCGTTGCTTCTTGCTAAATC 57.580 40.909 0.00 0.00 43.37 2.17
916 1003 3.674997 TCCGTTGCTTCTTGCTAAATCT 58.325 40.909 0.00 0.00 43.37 2.40
917 1004 3.436704 TCCGTTGCTTCTTGCTAAATCTG 59.563 43.478 0.00 0.00 43.37 2.90
918 1005 3.436704 CCGTTGCTTCTTGCTAAATCTGA 59.563 43.478 0.00 0.00 43.37 3.27
919 1006 4.083324 CCGTTGCTTCTTGCTAAATCTGAA 60.083 41.667 0.00 0.00 43.37 3.02
920 1007 5.392380 CCGTTGCTTCTTGCTAAATCTGAAT 60.392 40.000 0.00 0.00 43.37 2.57
921 1008 5.736358 CGTTGCTTCTTGCTAAATCTGAATC 59.264 40.000 0.00 0.00 43.37 2.52
922 1009 6.615088 GTTGCTTCTTGCTAAATCTGAATCA 58.385 36.000 0.00 0.00 43.37 2.57
923 1010 6.822667 TGCTTCTTGCTAAATCTGAATCAA 57.177 33.333 0.00 0.00 43.37 2.57
924 1011 6.849502 TGCTTCTTGCTAAATCTGAATCAAG 58.150 36.000 0.00 0.00 43.37 3.02
925 1012 5.742926 GCTTCTTGCTAAATCTGAATCAAGC 59.257 40.000 0.00 0.00 38.95 4.01
926 1013 5.824904 TCTTGCTAAATCTGAATCAAGCC 57.175 39.130 1.93 0.00 33.11 4.35
927 1014 5.255687 TCTTGCTAAATCTGAATCAAGCCA 58.744 37.500 1.93 0.00 33.11 4.75
928 1015 5.356190 TCTTGCTAAATCTGAATCAAGCCAG 59.644 40.000 1.93 1.02 33.11 4.85
929 1016 3.379372 TGCTAAATCTGAATCAAGCCAGC 59.621 43.478 1.93 0.30 0.00 4.85
930 1017 3.379372 GCTAAATCTGAATCAAGCCAGCA 59.621 43.478 0.00 0.00 0.00 4.41
931 1018 4.142315 GCTAAATCTGAATCAAGCCAGCAA 60.142 41.667 0.00 0.00 0.00 3.91
932 1019 5.451520 GCTAAATCTGAATCAAGCCAGCAAT 60.452 40.000 0.00 0.00 0.00 3.56
933 1020 5.416271 AAATCTGAATCAAGCCAGCAATT 57.584 34.783 0.00 0.00 0.00 2.32
934 1021 5.416271 AATCTGAATCAAGCCAGCAATTT 57.584 34.783 0.00 0.00 0.00 1.82
935 1022 4.182693 TCTGAATCAAGCCAGCAATTTG 57.817 40.909 0.00 0.00 0.00 2.32
936 1023 3.575256 TCTGAATCAAGCCAGCAATTTGT 59.425 39.130 0.00 0.00 0.00 2.83
937 1024 4.039488 TCTGAATCAAGCCAGCAATTTGTT 59.961 37.500 0.00 0.00 0.00 2.83
938 1025 4.059511 TGAATCAAGCCAGCAATTTGTTG 58.940 39.130 6.28 6.28 0.00 3.33
942 1029 2.997986 CAAGCCAGCAATTTGTTGGATC 59.002 45.455 29.76 16.25 43.96 3.36
943 1030 2.532843 AGCCAGCAATTTGTTGGATCT 58.467 42.857 29.76 17.92 43.96 2.75
944 1031 2.901839 AGCCAGCAATTTGTTGGATCTT 59.098 40.909 29.76 12.75 43.96 2.40
945 1032 3.325716 AGCCAGCAATTTGTTGGATCTTT 59.674 39.130 29.76 10.72 43.96 2.52
946 1033 4.527816 AGCCAGCAATTTGTTGGATCTTTA 59.472 37.500 29.76 0.00 43.96 1.85
947 1034 5.011943 AGCCAGCAATTTGTTGGATCTTTAA 59.988 36.000 29.76 0.00 43.96 1.52
948 1035 6.464180 AGCCAGCAATTTGTTGGATCTTTAAA 60.464 34.615 29.76 0.00 43.96 1.52
949 1036 7.904978 AGCCAGCAATTTGTTGGATCTTTAAAA 60.905 33.333 29.76 0.00 43.96 1.52
983 1070 3.743396 GTGCTTGACACTTTGAGTCCTAG 59.257 47.826 0.00 0.00 46.41 3.02
1007 1094 2.357034 CGTGACCAGACCGGGTTG 60.357 66.667 6.32 3.01 42.53 3.77
1038 1126 2.048222 CGAGCCTGCAAGTCCGAA 60.048 61.111 0.00 0.00 0.00 4.30
1057 1145 3.611674 GCGAGAGGGCTCTAGGGC 61.612 72.222 5.86 5.86 40.61 5.19
1058 1146 3.291383 CGAGAGGGCTCTAGGGCG 61.291 72.222 8.90 0.00 40.61 6.13
1059 1147 2.915137 GAGAGGGCTCTAGGGCGG 60.915 72.222 8.90 0.00 40.61 6.13
1200 1288 4.003788 CGACGAGGCACCCAAGGT 62.004 66.667 0.00 0.00 35.62 3.50
1506 1652 2.094762 AAGTTCCAAATCGAGACGGG 57.905 50.000 0.00 0.00 0.00 5.28
1642 1792 1.367102 CCCTGTGCGGCACAATTTT 59.633 52.632 32.71 0.00 44.08 1.82
1643 1793 0.667184 CCCTGTGCGGCACAATTTTC 60.667 55.000 32.71 7.38 44.08 2.29
1644 1794 0.314935 CCTGTGCGGCACAATTTTCT 59.685 50.000 32.71 0.00 44.08 2.52
1912 2068 2.587194 CATTCTCTGCCGCCGGAG 60.587 66.667 7.68 0.00 44.34 4.63
2500 2888 4.394439 TTTTACTTTGTTTGGTCAGCCC 57.606 40.909 0.00 0.00 0.00 5.19
2514 3027 2.580326 GCCCGCGATGTTTGCATG 60.580 61.111 8.23 0.00 35.07 4.06
2780 4013 2.125512 GGTCGCACAGGTAGGCAG 60.126 66.667 0.00 0.00 0.00 4.85
2810 4043 8.551682 AGCCTGAATAATTTCCATTATTTCCA 57.448 30.769 2.51 0.00 43.07 3.53
3141 4398 2.927477 TCGCTTTGACATGTCCGAATAC 59.073 45.455 22.85 11.26 0.00 1.89
3385 4703 9.010366 GTGTACAATGTTTTTCTTCAACTTCTC 57.990 33.333 0.00 0.00 0.00 2.87
3496 4814 1.186917 TTGCAGCAGGAATGGTTGGG 61.187 55.000 0.00 0.00 0.00 4.12
3719 5060 7.121759 GGAGATTGTGAAAATCCAGATGAAGAA 59.878 37.037 0.00 0.00 0.00 2.52
3738 5079 1.374631 CGCTGTTGCCAGAGTAGCA 60.375 57.895 0.00 0.00 41.50 3.49
3817 5158 6.321690 AGAGTCATACGAGCCAGTAAGTAAAT 59.678 38.462 0.00 0.00 0.00 1.40
3826 5167 3.242446 GCCAGTAAGTAAATCAGCTTCGC 60.242 47.826 0.00 0.00 0.00 4.70
3881 5229 9.897744 CTAACTGTTCATATTTTGTGTTGTCAT 57.102 29.630 0.00 0.00 0.00 3.06
4059 5407 2.514824 GGCAGATCCTTCCGGCAC 60.515 66.667 0.00 0.00 0.00 5.01
4210 5564 5.050023 GCTGAAACTGTTTCTGTTAGGAGAC 60.050 44.000 28.83 14.17 40.32 3.36
4232 5586 0.655733 CCTGCGTCGTTGTGTCTTTT 59.344 50.000 0.00 0.00 0.00 2.27
4233 5587 1.594518 CCTGCGTCGTTGTGTCTTTTG 60.595 52.381 0.00 0.00 0.00 2.44
4234 5588 1.062002 CTGCGTCGTTGTGTCTTTTGT 59.938 47.619 0.00 0.00 0.00 2.83
4245 5599 6.329496 GTTGTGTCTTTTGTCCATTTTGAGA 58.671 36.000 0.00 0.00 0.00 3.27
4362 5728 2.605837 TTGTGACACCAAAGCGTCTA 57.394 45.000 2.45 0.00 33.18 2.59
4381 5747 6.087687 GCGTCTAAAATTTTCTTGGTACTTGC 59.912 38.462 6.72 0.00 0.00 4.01
4392 5758 7.712264 TTCTTGGTACTTGCAAATTTTCATG 57.288 32.000 0.00 2.85 0.00 3.07
4404 5770 5.346822 GCAAATTTTCATGGTGAGATGACAC 59.653 40.000 0.00 0.00 39.70 3.67
4405 5771 6.684686 CAAATTTTCATGGTGAGATGACACT 58.315 36.000 0.00 0.00 40.22 3.55
4426 5792 2.832129 TGGAGGAGCCTAGTGTACAAAG 59.168 50.000 0.00 0.00 37.63 2.77
4427 5793 3.097614 GGAGGAGCCTAGTGTACAAAGA 58.902 50.000 0.00 0.00 0.00 2.52
4429 5795 4.496360 GAGGAGCCTAGTGTACAAAGAAC 58.504 47.826 0.00 0.00 0.00 3.01
4442 5808 8.560374 AGTGTACAAAGAACAAAATTAGAGCTC 58.440 33.333 5.27 5.27 0.00 4.09
4452 5818 5.107065 ACAAAATTAGAGCTCGGAAAACTCG 60.107 40.000 8.37 0.00 35.56 4.18
4466 5832 4.083961 GGAAAACTCGGAGCAACTTTAGAC 60.084 45.833 4.58 0.00 0.00 2.59
4471 5837 4.691216 ACTCGGAGCAACTTTAGACATTTC 59.309 41.667 4.58 0.00 0.00 2.17
4473 5839 3.678072 CGGAGCAACTTTAGACATTTCGA 59.322 43.478 0.00 0.00 0.00 3.71
4483 5849 8.779354 ACTTTAGACATTTCGAAGCTCTTAAT 57.221 30.769 0.00 0.00 0.00 1.40
4515 5927 8.503428 AACATAACTCCTCCTGAATCAGATAT 57.497 34.615 12.53 0.00 32.44 1.63
4518 5930 9.790344 CATAACTCCTCCTGAATCAGATATTTT 57.210 33.333 12.53 0.64 32.44 1.82
4549 5961 9.974980 TTTTCTTTTTCAAGTTAACTGTTCACT 57.025 25.926 9.34 1.64 0.00 3.41
4552 5964 7.392113 TCTTTTTCAAGTTAACTGTTCACTGGA 59.608 33.333 9.34 7.85 0.00 3.86
4554 5966 5.353394 TCAAGTTAACTGTTCACTGGAGT 57.647 39.130 9.34 0.00 0.00 3.85
4586 5998 1.201965 GGCTGCGCTATGAATTATCGC 60.202 52.381 9.73 0.00 43.81 4.58
4610 6022 3.329520 TGGCTGACCATAACAAACCTACT 59.670 43.478 0.00 0.00 42.67 2.57
4614 6026 6.403878 GCTGACCATAACAAACCTACTCTTA 58.596 40.000 0.00 0.00 0.00 2.10
4629 6041 7.919151 ACCTACTCTTAAGCAATAAAACTCCT 58.081 34.615 0.00 0.00 0.00 3.69
4640 6052 6.316390 AGCAATAAAACTCCTAAGTTCATCGG 59.684 38.462 0.00 0.00 45.07 4.18
4641 6053 6.458342 GCAATAAAACTCCTAAGTTCATCGGG 60.458 42.308 0.00 0.00 45.07 5.14
4666 6078 5.536554 AAAAAGATGAGTGATGCTACACG 57.463 39.130 7.84 0.00 44.35 4.49
4672 6084 2.177977 GAGTGATGCTACACGAACGAG 58.822 52.381 0.14 0.00 44.35 4.18
4698 6110 2.346803 TCTTTCAGATGGCACTTACGC 58.653 47.619 0.00 0.00 0.00 4.42
4704 6116 1.003851 GATGGCACTTACGCGCTAAA 58.996 50.000 5.73 0.00 0.00 1.85
4705 6117 1.004927 GATGGCACTTACGCGCTAAAG 60.005 52.381 5.73 10.58 0.00 1.85
4711 6123 2.477375 CACTTACGCGCTAAAGGTGAAA 59.523 45.455 18.96 0.00 0.00 2.69
4714 6126 0.719465 ACGCGCTAAAGGTGAAATCG 59.281 50.000 5.73 0.00 0.00 3.34
4722 6134 6.157211 CGCTAAAGGTGAAATCGGTCTATAT 58.843 40.000 0.00 0.00 0.00 0.86
4796 6239 2.230892 CGCAACGGAACTGCTTACA 58.769 52.632 0.00 0.00 37.67 2.41
4808 6262 6.238211 CGGAACTGCTTACATAAATTCCTGAG 60.238 42.308 0.00 0.00 33.44 3.35
4839 6481 4.937620 GGGATCGTACATGATGCATATGTT 59.062 41.667 19.83 8.20 38.33 2.71
4852 6494 8.410030 TGATGCATATGTTTCATTTAACTTGC 57.590 30.769 0.00 0.00 33.64 4.01
4853 6495 6.867799 TGCATATGTTTCATTTAACTTGCG 57.132 33.333 4.29 0.00 34.68 4.85
4854 6496 6.385843 TGCATATGTTTCATTTAACTTGCGT 58.614 32.000 4.29 0.00 34.68 5.24
4855 6497 6.865726 TGCATATGTTTCATTTAACTTGCGTT 59.134 30.769 4.29 0.00 34.68 4.84
4856 6498 7.383572 TGCATATGTTTCATTTAACTTGCGTTT 59.616 29.630 4.29 0.00 34.68 3.60
4857 6499 7.892731 GCATATGTTTCATTTAACTTGCGTTTC 59.107 33.333 4.29 0.00 34.59 2.78
4858 6500 6.763303 ATGTTTCATTTAACTTGCGTTTCC 57.237 33.333 0.00 0.00 34.59 3.13
4859 6501 5.044558 TGTTTCATTTAACTTGCGTTTCCC 58.955 37.500 0.00 0.00 34.59 3.97
4860 6502 3.926821 TCATTTAACTTGCGTTTCCCC 57.073 42.857 0.00 0.00 34.59 4.81
4861 6503 2.226912 TCATTTAACTTGCGTTTCCCCG 59.773 45.455 0.00 0.00 34.59 5.73
4862 6504 0.953003 TTTAACTTGCGTTTCCCCGG 59.047 50.000 0.00 0.00 34.59 5.73
4863 6505 0.108207 TTAACTTGCGTTTCCCCGGA 59.892 50.000 0.73 0.00 34.59 5.14
4864 6506 0.325602 TAACTTGCGTTTCCCCGGAT 59.674 50.000 0.73 0.00 34.59 4.18
4865 6507 0.958876 AACTTGCGTTTCCCCGGATC 60.959 55.000 0.73 0.00 0.00 3.36
4866 6508 1.376683 CTTGCGTTTCCCCGGATCA 60.377 57.895 0.73 0.00 0.00 2.92
4867 6509 0.748005 CTTGCGTTTCCCCGGATCAT 60.748 55.000 0.73 0.00 0.00 2.45
4868 6510 0.746563 TTGCGTTTCCCCGGATCATC 60.747 55.000 0.73 0.00 0.00 2.92
4869 6511 1.153249 GCGTTTCCCCGGATCATCA 60.153 57.895 0.73 0.00 0.00 3.07
4870 6512 0.746563 GCGTTTCCCCGGATCATCAA 60.747 55.000 0.73 0.00 0.00 2.57
4871 6513 1.014352 CGTTTCCCCGGATCATCAAC 58.986 55.000 0.73 0.00 0.00 3.18
4872 6514 1.014352 GTTTCCCCGGATCATCAACG 58.986 55.000 0.73 0.00 0.00 4.10
4873 6515 0.616371 TTTCCCCGGATCATCAACGT 59.384 50.000 0.73 0.00 0.00 3.99
4874 6516 0.177141 TTCCCCGGATCATCAACGTC 59.823 55.000 0.73 0.00 0.00 4.34
4875 6517 0.973496 TCCCCGGATCATCAACGTCA 60.973 55.000 0.73 0.00 0.00 4.35
4876 6518 0.530650 CCCCGGATCATCAACGTCAG 60.531 60.000 0.73 0.00 0.00 3.51
4877 6519 0.459899 CCCGGATCATCAACGTCAGA 59.540 55.000 0.73 0.00 0.00 3.27
4878 6520 1.069204 CCCGGATCATCAACGTCAGAT 59.931 52.381 0.73 0.00 0.00 2.90
4879 6521 2.483714 CCCGGATCATCAACGTCAGATT 60.484 50.000 0.73 0.00 0.00 2.40
4880 6522 2.541346 CCGGATCATCAACGTCAGATTG 59.459 50.000 0.00 0.00 0.00 2.67
4881 6523 3.190079 CGGATCATCAACGTCAGATTGT 58.810 45.455 0.00 0.00 0.00 2.71
4968 6643 6.043411 GTCTTGTACATGTTGGATAGAGACC 58.957 44.000 2.30 0.00 0.00 3.85
5007 6682 4.963276 TGCATATGTGAACCAAGCTTAC 57.037 40.909 0.00 0.00 0.00 2.34
5008 6683 4.331108 TGCATATGTGAACCAAGCTTACA 58.669 39.130 0.00 0.00 0.00 2.41
5010 6685 5.163632 TGCATATGTGAACCAAGCTTACATG 60.164 40.000 18.02 8.25 34.22 3.21
5039 6714 4.184629 GAGATGATCCTTTACGCAACACT 58.815 43.478 0.00 0.00 0.00 3.55
5064 6739 1.531739 CCCGGTTGGTGGGTGATTTG 61.532 60.000 0.00 0.00 42.07 2.32
5098 6773 5.182570 CAGGGATACGTCGAATGGAGTATTA 59.817 44.000 0.00 0.00 30.82 0.98
5102 6778 3.703420 ACGTCGAATGGAGTATTAGTGC 58.297 45.455 0.00 0.00 0.00 4.40
5108 6784 4.683400 CGAATGGAGTATTAGTGCCCAAGT 60.683 45.833 0.00 0.00 0.00 3.16
5126 6819 5.405269 CCCAAGTAGCAAGCAAAACAATTAC 59.595 40.000 0.00 0.00 0.00 1.89
5127 6820 5.982516 CCAAGTAGCAAGCAAAACAATTACA 59.017 36.000 0.00 0.00 0.00 2.41
5147 6840 1.001120 TACTGCTGGGTCGATGGGA 59.999 57.895 0.00 0.00 0.00 4.37
5165 6858 3.117663 TGGGACACTAGTTTGGCTCTTTT 60.118 43.478 0.00 0.00 0.00 2.27
5199 6892 7.148069 GCTAAATGCCTTTTAGTACATGGTCTT 60.148 37.037 14.31 0.00 45.77 3.01
5202 6895 5.007682 TGCCTTTTAGTACATGGTCTTTCC 58.992 41.667 0.00 0.00 0.00 3.13
5234 6928 4.024048 GGCACTTGTAATCATTACATCCGG 60.024 45.833 11.12 0.00 44.85 5.14
5235 6929 4.814234 GCACTTGTAATCATTACATCCGGA 59.186 41.667 6.61 6.61 44.85 5.14
5236 6930 5.277345 GCACTTGTAATCATTACATCCGGAC 60.277 44.000 6.12 0.00 44.85 4.79
5238 6932 5.104693 ACTTGTAATCATTACATCCGGACCA 60.105 40.000 6.12 0.00 44.85 4.02
5239 6933 4.956085 TGTAATCATTACATCCGGACCAG 58.044 43.478 6.12 1.83 40.97 4.00
5240 6934 4.651962 TGTAATCATTACATCCGGACCAGA 59.348 41.667 6.12 0.00 40.97 3.86
5241 6935 4.982241 AATCATTACATCCGGACCAGAT 57.018 40.909 6.12 1.83 0.00 2.90
5242 6936 3.751479 TCATTACATCCGGACCAGATG 57.249 47.619 15.04 15.04 45.43 2.90
5243 6937 2.146342 CATTACATCCGGACCAGATGC 58.854 52.381 16.32 0.00 44.08 3.91
5244 6938 1.496060 TTACATCCGGACCAGATGCT 58.504 50.000 16.32 7.56 44.08 3.79
5245 6939 0.752658 TACATCCGGACCAGATGCTG 59.247 55.000 16.32 0.00 44.08 4.41
5272 6971 5.731406 GCACACAATTAAGCATCATGTCGAT 60.731 40.000 0.00 0.00 33.27 3.59
5285 6984 5.236655 TCATGTCGATCACTGAAGACTAC 57.763 43.478 15.02 1.53 34.92 2.73
5287 6986 2.418976 TGTCGATCACTGAAGACTACCG 59.581 50.000 15.02 0.00 34.92 4.02
5289 6988 3.312973 GTCGATCACTGAAGACTACCGAT 59.687 47.826 9.53 0.00 0.00 4.18
5319 7024 9.976511 TTTATTGATATGGTAGTTAGGACTTCG 57.023 33.333 0.00 0.00 37.33 3.79
5327 7032 6.628185 TGGTAGTTAGGACTTCGAGAAATTC 58.372 40.000 0.00 0.00 37.33 2.17
5331 7036 5.189934 AGTTAGGACTTCGAGAAATTCCCAT 59.810 40.000 8.68 0.00 29.87 4.00
5332 7037 4.576330 AGGACTTCGAGAAATTCCCATT 57.424 40.909 8.68 0.00 0.00 3.16
5333 7038 5.693769 AGGACTTCGAGAAATTCCCATTA 57.306 39.130 8.68 0.00 0.00 1.90
5334 7039 5.675538 AGGACTTCGAGAAATTCCCATTAG 58.324 41.667 8.68 0.00 0.00 1.73
5335 7040 4.816925 GGACTTCGAGAAATTCCCATTAGG 59.183 45.833 0.00 0.00 0.00 2.69
5336 7041 5.396436 GGACTTCGAGAAATTCCCATTAGGA 60.396 44.000 0.00 0.00 45.68 2.94
5337 7042 6.253946 ACTTCGAGAAATTCCCATTAGGAT 57.746 37.500 0.00 0.00 46.94 3.24
5338 7043 6.292150 ACTTCGAGAAATTCCCATTAGGATC 58.708 40.000 0.00 0.00 46.94 3.36
5339 7044 5.887214 TCGAGAAATTCCCATTAGGATCA 57.113 39.130 0.00 0.00 46.94 2.92
5340 7045 6.247229 TCGAGAAATTCCCATTAGGATCAA 57.753 37.500 0.00 0.00 46.94 2.57
5341 7046 6.291377 TCGAGAAATTCCCATTAGGATCAAG 58.709 40.000 0.00 0.00 46.94 3.02
5342 7047 6.058183 CGAGAAATTCCCATTAGGATCAAGT 58.942 40.000 0.00 0.00 46.94 3.16
5343 7048 7.070696 TCGAGAAATTCCCATTAGGATCAAGTA 59.929 37.037 0.00 0.00 46.94 2.24
5344 7049 7.171678 CGAGAAATTCCCATTAGGATCAAGTAC 59.828 40.741 0.00 0.00 46.94 2.73
5345 7050 8.107196 AGAAATTCCCATTAGGATCAAGTACT 57.893 34.615 0.00 0.00 46.94 2.73
5346 7051 8.560903 AGAAATTCCCATTAGGATCAAGTACTT 58.439 33.333 1.12 1.12 46.94 2.24
5347 7052 8.525290 AAATTCCCATTAGGATCAAGTACTTG 57.475 34.615 26.60 26.60 46.94 3.16
5396 7101 8.715191 AAATGAGTATTTGTTTCAAGTTTGCA 57.285 26.923 0.00 0.00 35.26 4.08
5397 7102 8.715191 AATGAGTATTTGTTTCAAGTTTGCAA 57.285 26.923 0.00 0.00 0.00 4.08
5398 7103 8.891671 ATGAGTATTTGTTTCAAGTTTGCAAT 57.108 26.923 0.00 0.00 0.00 3.56
5399 7104 9.979578 ATGAGTATTTGTTTCAAGTTTGCAATA 57.020 25.926 0.00 0.00 0.00 1.90
5400 7105 9.979578 TGAGTATTTGTTTCAAGTTTGCAATAT 57.020 25.926 0.00 0.00 0.00 1.28
5428 7133 9.692325 AATTCAGATGATGATGATGATGATGAT 57.308 29.630 0.00 0.00 37.89 2.45
5429 7134 8.723942 TTCAGATGATGATGATGATGATGATC 57.276 34.615 0.00 0.00 37.89 2.92
5430 7135 7.851228 TCAGATGATGATGATGATGATGATCA 58.149 34.615 0.00 0.00 36.73 2.92
5431 7136 8.489489 TCAGATGATGATGATGATGATGATCAT 58.511 33.333 8.25 8.25 43.33 2.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
753 817 4.776795 TTGCCCGGAAATAAAACTTCTC 57.223 40.909 0.73 0.00 0.00 2.87
827 914 1.134521 ACTCGAGTGGTTGCAGAACAA 60.135 47.619 19.30 0.00 33.27 2.83
828 915 0.464036 ACTCGAGTGGTTGCAGAACA 59.536 50.000 19.30 0.00 33.27 3.18
829 916 1.261619 CAACTCGAGTGGTTGCAGAAC 59.738 52.381 20.85 0.00 37.76 3.01
830 917 1.134521 ACAACTCGAGTGGTTGCAGAA 60.135 47.619 20.22 0.00 45.34 3.02
831 918 0.464036 ACAACTCGAGTGGTTGCAGA 59.536 50.000 20.22 0.00 45.34 4.26
832 919 1.299541 AACAACTCGAGTGGTTGCAG 58.700 50.000 32.56 13.47 45.34 4.41
833 920 3.469564 AACAACTCGAGTGGTTGCA 57.530 47.368 32.56 0.00 45.34 4.08
836 923 4.457949 AGAAAAACAACAACTCGAGTGGTT 59.542 37.500 28.91 28.91 42.60 3.67
837 924 4.007659 AGAAAAACAACAACTCGAGTGGT 58.992 39.130 20.22 20.22 32.53 4.16
838 925 4.616181 AGAAAAACAACAACTCGAGTGG 57.384 40.909 20.85 19.71 0.00 4.00
839 926 6.927933 AAAAGAAAAACAACAACTCGAGTG 57.072 33.333 20.85 15.37 0.00 3.51
862 949 8.733458 ACATGATGAAGATTCGAAGATCAAAAA 58.267 29.630 3.35 0.00 35.04 1.94
863 950 8.272545 ACATGATGAAGATTCGAAGATCAAAA 57.727 30.769 3.35 1.84 35.04 2.44
864 951 7.854557 ACATGATGAAGATTCGAAGATCAAA 57.145 32.000 3.35 2.16 35.04 2.69
865 952 7.854557 AACATGATGAAGATTCGAAGATCAA 57.145 32.000 3.35 0.00 35.04 2.57
866 953 8.985805 CATAACATGATGAAGATTCGAAGATCA 58.014 33.333 3.35 8.29 35.04 2.92
867 954 8.986847 ACATAACATGATGAAGATTCGAAGATC 58.013 33.333 3.35 2.41 35.04 2.75
868 955 8.899427 ACATAACATGATGAAGATTCGAAGAT 57.101 30.769 3.35 0.00 35.04 2.40
869 956 8.722480 AACATAACATGATGAAGATTCGAAGA 57.278 30.769 3.35 0.00 0.00 2.87
870 957 9.430838 GAAACATAACATGATGAAGATTCGAAG 57.569 33.333 3.35 0.00 0.00 3.79
871 958 8.397906 GGAAACATAACATGATGAAGATTCGAA 58.602 33.333 0.00 0.00 0.00 3.71
872 959 7.254421 CGGAAACATAACATGATGAAGATTCGA 60.254 37.037 0.00 0.00 0.00 3.71
873 960 6.847792 CGGAAACATAACATGATGAAGATTCG 59.152 38.462 0.00 0.00 0.00 3.34
874 961 7.697691 ACGGAAACATAACATGATGAAGATTC 58.302 34.615 0.00 0.29 0.00 2.52
875 962 7.630242 ACGGAAACATAACATGATGAAGATT 57.370 32.000 0.00 0.00 0.00 2.40
876 963 7.475015 CAACGGAAACATAACATGATGAAGAT 58.525 34.615 0.00 0.00 0.00 2.40
877 964 6.622679 GCAACGGAAACATAACATGATGAAGA 60.623 38.462 0.00 0.00 0.00 2.87
878 965 5.512788 GCAACGGAAACATAACATGATGAAG 59.487 40.000 0.00 0.00 0.00 3.02
879 966 5.182950 AGCAACGGAAACATAACATGATGAA 59.817 36.000 0.00 0.00 0.00 2.57
880 967 4.699735 AGCAACGGAAACATAACATGATGA 59.300 37.500 0.00 0.00 0.00 2.92
881 968 4.985413 AGCAACGGAAACATAACATGATG 58.015 39.130 0.00 0.00 0.00 3.07
882 969 5.415701 AGAAGCAACGGAAACATAACATGAT 59.584 36.000 0.00 0.00 0.00 2.45
883 970 4.759693 AGAAGCAACGGAAACATAACATGA 59.240 37.500 0.00 0.00 0.00 3.07
884 971 5.046910 AGAAGCAACGGAAACATAACATG 57.953 39.130 0.00 0.00 0.00 3.21
885 972 5.460646 CAAGAAGCAACGGAAACATAACAT 58.539 37.500 0.00 0.00 0.00 2.71
886 973 4.791411 GCAAGAAGCAACGGAAACATAACA 60.791 41.667 0.00 0.00 44.79 2.41
887 974 3.668656 GCAAGAAGCAACGGAAACATAAC 59.331 43.478 0.00 0.00 44.79 1.89
888 975 3.896122 GCAAGAAGCAACGGAAACATAA 58.104 40.909 0.00 0.00 44.79 1.90
889 976 3.552604 GCAAGAAGCAACGGAAACATA 57.447 42.857 0.00 0.00 44.79 2.29
890 977 2.422276 GCAAGAAGCAACGGAAACAT 57.578 45.000 0.00 0.00 44.79 2.71
891 978 3.936585 GCAAGAAGCAACGGAAACA 57.063 47.368 0.00 0.00 44.79 2.83
901 988 5.742926 GCTTGATTCAGATTTAGCAAGAAGC 59.257 40.000 0.00 0.00 46.19 3.86
902 989 6.127814 TGGCTTGATTCAGATTTAGCAAGAAG 60.128 38.462 0.00 0.00 35.89 2.85
903 990 5.711506 TGGCTTGATTCAGATTTAGCAAGAA 59.288 36.000 0.00 0.00 35.89 2.52
904 991 5.255687 TGGCTTGATTCAGATTTAGCAAGA 58.744 37.500 0.00 0.00 35.89 3.02
905 992 5.571784 TGGCTTGATTCAGATTTAGCAAG 57.428 39.130 8.98 0.00 36.67 4.01
906 993 4.142315 GCTGGCTTGATTCAGATTTAGCAA 60.142 41.667 8.98 0.00 33.11 3.91
907 994 3.379372 GCTGGCTTGATTCAGATTTAGCA 59.621 43.478 8.98 0.00 33.11 3.49
908 995 3.379372 TGCTGGCTTGATTCAGATTTAGC 59.621 43.478 0.00 0.00 33.11 3.09
909 996 5.571784 TTGCTGGCTTGATTCAGATTTAG 57.428 39.130 0.00 0.00 33.11 1.85
910 997 6.534475 AATTGCTGGCTTGATTCAGATTTA 57.466 33.333 0.00 0.00 33.11 1.40
911 998 5.416271 AATTGCTGGCTTGATTCAGATTT 57.584 34.783 0.00 0.00 33.11 2.17
912 999 5.175859 CAAATTGCTGGCTTGATTCAGATT 58.824 37.500 0.00 0.00 33.11 2.40
913 1000 4.222145 ACAAATTGCTGGCTTGATTCAGAT 59.778 37.500 0.00 0.00 33.11 2.90
914 1001 3.575256 ACAAATTGCTGGCTTGATTCAGA 59.425 39.130 0.00 0.00 33.11 3.27
915 1002 3.921677 ACAAATTGCTGGCTTGATTCAG 58.078 40.909 0.00 0.00 0.00 3.02
916 1003 4.059511 CAACAAATTGCTGGCTTGATTCA 58.940 39.130 0.00 0.00 0.00 2.57
917 1004 3.434299 CCAACAAATTGCTGGCTTGATTC 59.566 43.478 2.17 0.00 34.17 2.52
918 1005 3.071312 TCCAACAAATTGCTGGCTTGATT 59.929 39.130 10.38 0.00 33.75 2.57
919 1006 2.633967 TCCAACAAATTGCTGGCTTGAT 59.366 40.909 10.38 0.00 33.75 2.57
920 1007 2.037901 TCCAACAAATTGCTGGCTTGA 58.962 42.857 10.38 0.00 33.75 3.02
921 1008 2.529780 TCCAACAAATTGCTGGCTTG 57.470 45.000 10.38 0.00 33.75 4.01
922 1009 2.901839 AGATCCAACAAATTGCTGGCTT 59.098 40.909 10.38 1.02 33.75 4.35
923 1010 2.532843 AGATCCAACAAATTGCTGGCT 58.467 42.857 10.38 0.83 33.75 4.75
924 1011 3.323751 AAGATCCAACAAATTGCTGGC 57.676 42.857 10.38 0.00 33.75 4.85
925 1012 7.727331 TTTTAAAGATCCAACAAATTGCTGG 57.273 32.000 9.03 9.03 35.01 4.85
949 1036 5.500645 GTGTCAAGCACTAGGAACTTTTT 57.499 39.130 0.00 0.00 44.41 1.94
962 1049 3.641436 TCTAGGACTCAAAGTGTCAAGCA 59.359 43.478 0.00 0.00 36.26 3.91
983 1070 4.736896 GTCTGGTCACGCCCGGTC 62.737 72.222 0.00 0.00 36.04 4.79
1038 1126 2.197324 CCTAGAGCCCTCTCGCCT 59.803 66.667 0.22 0.00 44.02 5.52
1041 1129 3.291383 CGCCCTAGAGCCCTCTCG 61.291 72.222 0.22 0.00 44.02 4.04
1063 1151 4.421479 ACCGCTCGCGTCTTCAGG 62.421 66.667 5.77 5.16 37.81 3.86
1064 1152 3.175240 CACCGCTCGCGTCTTCAG 61.175 66.667 5.77 0.00 37.81 3.02
1506 1652 2.353323 GGTCGGATTCCCAAACTGTAC 58.647 52.381 0.00 0.00 0.00 2.90
2066 2222 1.202758 TCAAACATGCCACGGAGACTT 60.203 47.619 0.00 0.00 0.00 3.01
2500 2888 0.168788 AACTCCATGCAAACATCGCG 59.831 50.000 0.00 0.00 32.87 5.87
2780 4013 8.870075 ATAATGGAAATTATTCAGGCTAGGAC 57.130 34.615 0.00 0.00 37.29 3.85
3141 4398 0.815734 ACACAGATCCCTTCGTACCG 59.184 55.000 0.00 0.00 0.00 4.02
3385 4703 2.073056 TCGGTCAACAAACCATCATCG 58.927 47.619 0.00 0.00 39.43 3.84
3496 4814 5.004726 GTGTGTTTCTTGCATTGTGTTCTTC 59.995 40.000 0.00 0.00 0.00 2.87
3738 5079 3.118956 CGTGTAGAGAGATGCCCTTCTTT 60.119 47.826 0.00 0.00 0.00 2.52
3826 5167 9.480053 ACCAAAGATTGTGTATGATTTCAAAAG 57.520 29.630 0.00 0.00 0.00 2.27
3868 5216 5.992829 ACCGTACATCTATGACAACACAAAA 59.007 36.000 0.00 0.00 0.00 2.44
3881 5229 0.177141 GGCCTTGCACCGTACATCTA 59.823 55.000 0.00 0.00 0.00 1.98
4059 5407 1.379044 GGTGCTGGGACCAAGATGG 60.379 63.158 0.00 0.00 45.02 3.51
4245 5599 9.299465 GCAGGGATCTACTAGTACTACTATTTT 57.701 37.037 0.00 0.00 29.08 1.82
4282 5636 3.057019 TGAACATACTGTTGACGCACTC 58.943 45.455 0.00 0.00 41.28 3.51
4381 5747 6.584942 CAGTGTCATCTCACCATGAAAATTTG 59.415 38.462 0.00 0.00 38.91 2.32
4392 5758 1.480137 CTCCTCCAGTGTCATCTCACC 59.520 57.143 0.00 0.00 38.91 4.02
4404 5770 2.145397 TGTACACTAGGCTCCTCCAG 57.855 55.000 0.00 0.00 37.29 3.86
4405 5771 2.615986 TTGTACACTAGGCTCCTCCA 57.384 50.000 0.00 0.00 37.29 3.86
4426 5792 6.669278 AGTTTTCCGAGCTCTAATTTTGTTC 58.331 36.000 12.85 0.00 0.00 3.18
4427 5793 6.565999 CGAGTTTTCCGAGCTCTAATTTTGTT 60.566 38.462 12.85 0.00 0.00 2.83
4429 5795 5.316770 CGAGTTTTCCGAGCTCTAATTTTG 58.683 41.667 12.85 0.00 0.00 2.44
4442 5808 1.226746 AAGTTGCTCCGAGTTTTCCG 58.773 50.000 0.00 0.00 0.00 4.30
4452 5818 5.607119 TTCGAAATGTCTAAAGTTGCTCC 57.393 39.130 0.00 0.00 0.00 4.70
4487 5861 8.146053 TCTGATTCAGGAGGAGTTATGTTAAA 57.854 34.615 13.59 0.00 31.51 1.52
4490 5864 6.821616 ATCTGATTCAGGAGGAGTTATGTT 57.178 37.500 13.59 0.00 31.51 2.71
4549 5961 1.900351 CCCGAGCTCATCAACTCCA 59.100 57.895 15.40 0.00 0.00 3.86
4610 6022 9.787435 TGAACTTAGGAGTTTTATTGCTTAAGA 57.213 29.630 6.67 0.00 45.88 2.10
4614 6026 7.148239 CCGATGAACTTAGGAGTTTTATTGCTT 60.148 37.037 0.00 0.00 45.88 3.91
4647 6059 4.177026 GTTCGTGTAGCATCACTCATCTT 58.823 43.478 9.04 0.00 36.33 2.40
4650 6062 2.163613 TCGTTCGTGTAGCATCACTCAT 59.836 45.455 9.04 0.00 36.33 2.90
4651 6063 1.538075 TCGTTCGTGTAGCATCACTCA 59.462 47.619 9.04 0.00 36.33 3.41
4652 6064 2.159558 TCTCGTTCGTGTAGCATCACTC 60.160 50.000 9.04 0.00 36.33 3.51
4653 6065 1.810755 TCTCGTTCGTGTAGCATCACT 59.189 47.619 9.04 0.00 36.33 3.41
4672 6084 8.770775 GCGTAAGTGCCATCTGAAAGAAAATTC 61.771 40.741 0.00 0.00 44.98 2.17
4698 6110 2.618053 AGACCGATTTCACCTTTAGCG 58.382 47.619 0.00 0.00 0.00 4.26
4741 6154 8.682936 AGAGAAAATTCAGCGACCAATAATAT 57.317 30.769 0.00 0.00 0.00 1.28
4750 6163 8.902040 ATAAATTGAAGAGAAAATTCAGCGAC 57.098 30.769 0.00 0.00 37.91 5.19
4789 6232 8.806429 TTGATTCTCAGGAATTTATGTAAGCA 57.194 30.769 0.00 0.00 41.68 3.91
4796 6239 6.596869 TCCCCTTGATTCTCAGGAATTTAT 57.403 37.500 4.50 0.00 41.68 1.40
4808 6262 4.336889 TCATGTACGATCCCCTTGATTC 57.663 45.455 0.00 0.00 32.41 2.52
4850 6492 1.153249 GATGATCCGGGGAAACGCA 60.153 57.895 0.00 0.00 45.02 5.24
4851 6493 0.746563 TTGATGATCCGGGGAAACGC 60.747 55.000 0.00 0.00 40.49 4.84
4852 6494 1.014352 GTTGATGATCCGGGGAAACG 58.986 55.000 0.00 0.00 0.00 3.60
4853 6495 1.014352 CGTTGATGATCCGGGGAAAC 58.986 55.000 0.00 0.00 0.00 2.78
4854 6496 0.616371 ACGTTGATGATCCGGGGAAA 59.384 50.000 0.00 0.00 0.00 3.13
4855 6497 0.177141 GACGTTGATGATCCGGGGAA 59.823 55.000 0.00 0.00 0.00 3.97
4856 6498 0.973496 TGACGTTGATGATCCGGGGA 60.973 55.000 0.00 0.00 0.00 4.81
4857 6499 0.530650 CTGACGTTGATGATCCGGGG 60.531 60.000 0.00 0.00 0.00 5.73
4858 6500 0.459899 TCTGACGTTGATGATCCGGG 59.540 55.000 0.00 0.00 0.00 5.73
4859 6501 2.515926 ATCTGACGTTGATGATCCGG 57.484 50.000 0.00 0.00 0.00 5.14
4860 6502 3.190079 ACAATCTGACGTTGATGATCCG 58.810 45.455 5.90 0.00 0.00 4.18
4861 6503 4.631377 TGAACAATCTGACGTTGATGATCC 59.369 41.667 5.90 0.00 0.00 3.36
4862 6504 5.349817 ACTGAACAATCTGACGTTGATGATC 59.650 40.000 5.90 5.94 0.00 2.92
4863 6505 5.240891 ACTGAACAATCTGACGTTGATGAT 58.759 37.500 5.90 0.00 0.00 2.45
4864 6506 4.631131 ACTGAACAATCTGACGTTGATGA 58.369 39.130 5.90 0.00 0.00 2.92
4865 6507 4.997905 ACTGAACAATCTGACGTTGATG 57.002 40.909 5.90 4.11 0.00 3.07
4866 6508 6.346598 CGTAAACTGAACAATCTGACGTTGAT 60.347 38.462 0.00 0.00 0.00 2.57
4867 6509 5.051307 CGTAAACTGAACAATCTGACGTTGA 60.051 40.000 0.00 0.00 0.00 3.18
4868 6510 5.130519 CGTAAACTGAACAATCTGACGTTG 58.869 41.667 0.00 0.00 0.00 4.10
4869 6511 4.318546 GCGTAAACTGAACAATCTGACGTT 60.319 41.667 0.00 0.00 30.30 3.99
4870 6512 3.183775 GCGTAAACTGAACAATCTGACGT 59.816 43.478 0.00 0.00 30.30 4.34
4871 6513 3.183574 TGCGTAAACTGAACAATCTGACG 59.816 43.478 0.00 0.00 0.00 4.35
4872 6514 4.025229 TGTGCGTAAACTGAACAATCTGAC 60.025 41.667 0.00 0.00 0.00 3.51
4873 6515 4.123506 TGTGCGTAAACTGAACAATCTGA 58.876 39.130 0.00 0.00 0.00 3.27
4874 6516 4.466567 TGTGCGTAAACTGAACAATCTG 57.533 40.909 0.00 0.00 0.00 2.90
4875 6517 5.065988 ACTTTGTGCGTAAACTGAACAATCT 59.934 36.000 0.00 0.00 31.34 2.40
4876 6518 5.270853 ACTTTGTGCGTAAACTGAACAATC 58.729 37.500 0.00 0.00 31.34 2.67
4877 6519 5.243426 ACTTTGTGCGTAAACTGAACAAT 57.757 34.783 0.00 0.00 31.34 2.71
4878 6520 4.654015 GACTTTGTGCGTAAACTGAACAA 58.346 39.130 0.00 0.00 0.00 2.83
4879 6521 3.242155 CGACTTTGTGCGTAAACTGAACA 60.242 43.478 0.00 0.00 0.00 3.18
4880 6522 3.000523 TCGACTTTGTGCGTAAACTGAAC 59.999 43.478 0.00 0.00 0.00 3.18
4881 6523 3.188492 TCGACTTTGTGCGTAAACTGAA 58.812 40.909 0.00 0.00 0.00 3.02
4968 6643 2.164422 TGCATGTAGGTTCACTCTCGAG 59.836 50.000 5.93 5.93 0.00 4.04
5007 6682 6.470556 CGTAAAGGATCATCTCGCTATACATG 59.529 42.308 0.00 0.00 0.00 3.21
5008 6683 6.556212 CGTAAAGGATCATCTCGCTATACAT 58.444 40.000 0.00 0.00 0.00 2.29
5010 6685 4.794246 GCGTAAAGGATCATCTCGCTATAC 59.206 45.833 13.49 0.00 39.26 1.47
5039 6714 2.282816 CCACCAACCGGGCAATCA 60.283 61.111 6.32 0.00 42.05 2.57
5057 6732 1.202110 CCTGTCAGCGATGCAAATCAC 60.202 52.381 0.00 0.00 0.00 3.06
5064 6739 0.941463 CGTATCCCTGTCAGCGATGC 60.941 60.000 9.82 7.69 0.00 3.91
5098 6773 0.178992 TTGCTTGCTACTTGGGCACT 60.179 50.000 0.00 0.00 39.55 4.40
5102 6778 3.451141 TTGTTTTGCTTGCTACTTGGG 57.549 42.857 0.00 0.00 0.00 4.12
5108 6784 7.359595 CAGTACTGTAATTGTTTTGCTTGCTA 58.640 34.615 15.06 0.00 0.00 3.49
5126 6819 0.179100 CCATCGACCCAGCAGTACTG 60.179 60.000 18.93 18.93 46.77 2.74
5127 6820 1.330655 CCCATCGACCCAGCAGTACT 61.331 60.000 0.00 0.00 0.00 2.73
5147 6840 5.376625 TGATCAAAAGAGCCAAACTAGTGT 58.623 37.500 0.00 0.00 0.00 3.55
5149 6842 5.352569 CGATGATCAAAAGAGCCAAACTAGT 59.647 40.000 0.00 0.00 0.00 2.57
5199 6892 1.278985 ACAAGTGCCGAGATGATGGAA 59.721 47.619 0.00 0.00 0.00 3.53
5202 6895 4.122046 TGATTACAAGTGCCGAGATGATG 58.878 43.478 0.00 0.00 0.00 3.07
5242 6936 1.000385 TGCTTAATTGTGTGCACCAGC 60.000 47.619 15.69 11.11 42.57 4.85
5243 6937 3.057386 TGATGCTTAATTGTGTGCACCAG 60.057 43.478 15.69 1.23 38.29 4.00
5244 6938 2.889678 TGATGCTTAATTGTGTGCACCA 59.110 40.909 15.69 9.21 38.29 4.17
5245 6939 3.574284 TGATGCTTAATTGTGTGCACC 57.426 42.857 15.69 6.37 38.29 5.01
5370 7075 9.809096 TGCAAACTTGAAACAAATACTCATTTA 57.191 25.926 0.00 0.00 32.96 1.40
5371 7076 8.715191 TGCAAACTTGAAACAAATACTCATTT 57.285 26.923 0.00 0.00 34.60 2.32
5372 7077 8.715191 TTGCAAACTTGAAACAAATACTCATT 57.285 26.923 0.00 0.00 0.00 2.57
5373 7078 8.891671 ATTGCAAACTTGAAACAAATACTCAT 57.108 26.923 1.71 0.00 0.00 2.90
5374 7079 9.979578 ATATTGCAAACTTGAAACAAATACTCA 57.020 25.926 1.71 0.00 0.00 3.41
5402 7107 9.692325 ATCATCATCATCATCATCATCTGAATT 57.308 29.630 0.00 0.00 37.44 2.17
5403 7108 9.336171 GATCATCATCATCATCATCATCTGAAT 57.664 33.333 0.00 0.00 37.44 2.57
5404 7109 8.321353 TGATCATCATCATCATCATCATCTGAA 58.679 33.333 0.00 0.00 34.01 3.02
5405 7110 7.851228 TGATCATCATCATCATCATCATCTGA 58.149 34.615 0.00 0.00 33.80 3.27
5406 7111 8.557864 CATGATCATCATCATCATCATCATCTG 58.442 37.037 4.86 0.00 45.26 2.90
5407 7112 8.489489 TCATGATCATCATCATCATCATCATCT 58.511 33.333 4.86 0.00 45.26 2.90
5408 7113 8.668510 TCATGATCATCATCATCATCATCATC 57.331 34.615 4.86 0.00 45.26 2.92
5409 7114 9.064706 CATCATGATCATCATCATCATCATCAT 57.935 33.333 4.86 0.00 45.26 2.45
5410 7115 8.267183 TCATCATGATCATCATCATCATCATCA 58.733 33.333 4.86 0.00 45.26 3.07
5411 7116 8.668510 TCATCATGATCATCATCATCATCATC 57.331 34.615 4.86 0.00 45.26 2.92
5412 7117 9.064706 CATCATCATGATCATCATCATCATCAT 57.935 33.333 4.86 0.00 45.26 2.45
5413 7118 8.267183 TCATCATCATGATCATCATCATCATCA 58.733 33.333 4.86 0.00 45.26 3.07
5414 7119 8.668510 TCATCATCATGATCATCATCATCATC 57.331 34.615 4.86 0.00 45.26 2.92
5415 7120 9.064706 CATCATCATCATGATCATCATCATCAT 57.935 33.333 4.86 0.00 45.26 2.45
5416 7121 8.267183 TCATCATCATCATGATCATCATCATCA 58.733 33.333 4.86 0.00 45.26 3.07
5417 7122 8.668510 TCATCATCATCATGATCATCATCATC 57.331 34.615 4.86 0.00 45.26 2.92
5418 7123 9.064706 CATCATCATCATCATGATCATCATCAT 57.935 33.333 4.86 0.00 45.26 2.45
5419 7124 7.500227 CCATCATCATCATCATGATCATCATCA 59.500 37.037 4.86 0.00 45.26 3.07
5420 7125 7.500559 ACCATCATCATCATCATGATCATCATC 59.499 37.037 4.86 0.00 45.26 2.92
5421 7126 7.284034 CACCATCATCATCATCATGATCATCAT 59.716 37.037 4.86 0.00 45.26 2.45
5422 7127 6.599244 CACCATCATCATCATCATGATCATCA 59.401 38.462 4.86 0.00 45.26 3.07
5423 7128 6.823689 TCACCATCATCATCATCATGATCATC 59.176 38.462 4.86 0.00 45.26 2.92
5424 7129 6.721318 TCACCATCATCATCATCATGATCAT 58.279 36.000 4.86 1.18 45.26 2.45
5425 7130 6.121776 TCACCATCATCATCATCATGATCA 57.878 37.500 4.86 0.00 45.26 2.92
5426 7131 8.732746 TTATCACCATCATCATCATCATGATC 57.267 34.615 4.86 0.00 45.26 2.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.