Multiple sequence alignment - TraesCS5D01G073300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G073300 chr5D 100.000 3343 0 0 1 3343 72588622 72591964 0.000000e+00 6174.0
1 TraesCS5D01G073300 chr5D 87.443 1099 98 12 1276 2348 72613479 72614563 0.000000e+00 1229.0
2 TraesCS5D01G073300 chr5D 98.374 246 3 1 3093 3338 72591470 72591714 6.630000e-117 431.0
3 TraesCS5D01G073300 chr5D 98.374 246 3 1 2849 3093 72591714 72591959 6.630000e-117 431.0
4 TraesCS5D01G073300 chr5D 93.229 192 10 1 1 189 521840064 521839873 2.540000e-71 279.0
5 TraesCS5D01G073300 chr5D 92.228 193 11 2 1 189 447190442 447190250 1.530000e-68 270.0
6 TraesCS5D01G073300 chr5D 90.000 50 5 0 2743 2792 291507613 291507662 7.740000e-07 65.8
7 TraesCS5D01G073300 chr5B 92.461 2202 105 23 270 2442 79563326 79561157 0.000000e+00 3090.0
8 TraesCS5D01G073300 chr5B 86.345 1223 108 25 1296 2483 79423524 79422326 0.000000e+00 1279.0
9 TraesCS5D01G073300 chr5B 81.616 359 38 13 805 1150 79423942 79423599 4.250000e-69 272.0
10 TraesCS5D01G073300 chr5A 89.383 1978 140 28 550 2470 65010428 65012392 0.000000e+00 2425.0
11 TraesCS5D01G073300 chr5A 85.860 1860 208 33 1279 3092 65360197 65362047 0.000000e+00 1927.0
12 TraesCS5D01G073300 chr5A 86.218 1190 124 16 1287 2459 65355269 65356435 0.000000e+00 1253.0
13 TraesCS5D01G073300 chr5A 88.772 570 34 9 2530 3093 65012541 65013086 0.000000e+00 671.0
14 TraesCS5D01G073300 chr5A 92.691 301 19 1 258 558 65009722 65010019 6.630000e-117 431.0
15 TraesCS5D01G073300 chr5A 97.083 240 6 1 3104 3343 65012853 65013091 1.440000e-108 403.0
16 TraesCS5D01G073300 chr5A 91.566 249 19 1 3095 3343 65361807 65362053 3.190000e-90 342.0
17 TraesCS5D01G073300 chr5A 81.298 262 34 6 936 1183 65359797 65360057 7.320000e-47 198.0
18 TraesCS5D01G073300 chr2D 93.158 190 9 2 1 186 361409368 361409557 3.290000e-70 276.0
19 TraesCS5D01G073300 chr2D 92.746 193 11 1 1 190 633256790 633256982 3.290000e-70 276.0
20 TraesCS5D01G073300 chr2D 92.746 193 11 1 1 190 633284145 633284337 3.290000e-70 276.0
21 TraesCS5D01G073300 chr2D 91.710 193 13 1 1 190 633234959 633235151 7.110000e-67 265.0
22 TraesCS5D01G073300 chr6D 91.837 196 12 2 1 192 47262082 47261887 1.530000e-68 270.0
23 TraesCS5D01G073300 chr3B 92.188 192 12 1 1 189 578226200 578226391 5.500000e-68 268.0
24 TraesCS5D01G073300 chr1B 92.188 192 11 2 1 189 612859570 612859760 5.500000e-68 268.0
25 TraesCS5D01G073300 chr1D 95.652 46 2 0 2755 2800 101583702 101583657 1.290000e-09 75.0
26 TraesCS5D01G073300 chr1D 83.562 73 12 0 2743 2815 313564594 313564666 5.980000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G073300 chr5D 72588622 72591964 3342 False 2345.333333 6174 98.91600 1 3343 3 chr5D.!!$F3 3342
1 TraesCS5D01G073300 chr5D 72613479 72614563 1084 False 1229.000000 1229 87.44300 1276 2348 1 chr5D.!!$F1 1072
2 TraesCS5D01G073300 chr5B 79561157 79563326 2169 True 3090.000000 3090 92.46100 270 2442 1 chr5B.!!$R1 2172
3 TraesCS5D01G073300 chr5B 79422326 79423942 1616 True 775.500000 1279 83.98050 805 2483 2 chr5B.!!$R2 1678
4 TraesCS5D01G073300 chr5A 65009722 65013091 3369 False 982.500000 2425 91.98225 258 3343 4 chr5A.!!$F1 3085
5 TraesCS5D01G073300 chr5A 65355269 65362053 6784 False 930.000000 1927 86.23550 936 3343 4 chr5A.!!$F2 2407

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
191 192 0.036306 CGCCCAACCCTTCTAGTTGT 59.964 55.000 3.26 0.00 42.46 3.32 F
309 310 1.899814 TCCAAATGCTAGGTCTGACGT 59.100 47.619 8.19 8.19 0.00 4.34 F
2156 5944 1.125093 TCCTCGCCAAGTTCTTCCCA 61.125 55.000 0.00 0.00 0.00 4.37 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1344 5087 1.264045 GGAAGAGGGTCAGCTGCTCT 61.264 60.000 14.49 14.49 0.00 4.09 R
2193 5981 0.807667 CACCCCTTCTTCATCTCGCG 60.808 60.000 0.00 0.00 0.00 5.87 R
3072 6999 1.542915 GAGAGCTGCATTCTTTTGCCA 59.457 47.619 1.02 0.00 42.06 4.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
162 163 1.154225 CCAACAGATTCAACGGCGC 60.154 57.895 6.90 0.00 0.00 6.53
163 164 1.573932 CAACAGATTCAACGGCGCA 59.426 52.632 10.83 0.00 0.00 6.09
186 187 4.770874 GCGCGCCCAACCCTTCTA 62.771 66.667 23.24 0.00 0.00 2.10
187 188 2.511600 CGCGCCCAACCCTTCTAG 60.512 66.667 0.00 0.00 0.00 2.43
189 190 1.002502 GCGCCCAACCCTTCTAGTT 60.003 57.895 0.00 0.00 0.00 2.24
191 192 0.036306 CGCCCAACCCTTCTAGTTGT 59.964 55.000 3.26 0.00 42.46 3.32
193 194 2.289819 CGCCCAACCCTTCTAGTTGTTA 60.290 50.000 3.26 0.00 42.46 2.41
195 196 4.341487 GCCCAACCCTTCTAGTTGTTATT 58.659 43.478 3.26 0.00 42.46 1.40
196 197 5.503002 GCCCAACCCTTCTAGTTGTTATTA 58.497 41.667 3.26 0.00 42.46 0.98
197 198 5.589050 GCCCAACCCTTCTAGTTGTTATTAG 59.411 44.000 3.26 0.00 42.46 1.73
198 199 6.718294 CCCAACCCTTCTAGTTGTTATTAGT 58.282 40.000 3.26 0.00 42.46 2.24
199 200 7.173032 CCCAACCCTTCTAGTTGTTATTAGTT 58.827 38.462 3.26 0.00 42.46 2.24
200 201 7.336176 CCCAACCCTTCTAGTTGTTATTAGTTC 59.664 40.741 3.26 0.00 42.46 3.01
201 202 8.101419 CCAACCCTTCTAGTTGTTATTAGTTCT 58.899 37.037 3.26 0.00 42.46 3.01
202 203 8.936864 CAACCCTTCTAGTTGTTATTAGTTCTG 58.063 37.037 0.00 0.00 39.79 3.02
203 204 7.621796 ACCCTTCTAGTTGTTATTAGTTCTGG 58.378 38.462 0.00 0.00 0.00 3.86
204 205 7.237055 ACCCTTCTAGTTGTTATTAGTTCTGGT 59.763 37.037 0.00 0.00 0.00 4.00
205 206 7.549488 CCCTTCTAGTTGTTATTAGTTCTGGTG 59.451 40.741 0.00 0.00 0.00 4.17
206 207 8.095169 CCTTCTAGTTGTTATTAGTTCTGGTGT 58.905 37.037 0.00 0.00 0.00 4.16
207 208 9.490379 CTTCTAGTTGTTATTAGTTCTGGTGTT 57.510 33.333 0.00 0.00 0.00 3.32
208 209 9.841295 TTCTAGTTGTTATTAGTTCTGGTGTTT 57.159 29.630 0.00 0.00 0.00 2.83
222 223 8.956426 AGTTCTGGTGTTTATTGTAATACCATG 58.044 33.333 5.61 0.00 44.80 3.66
223 224 8.952278 GTTCTGGTGTTTATTGTAATACCATGA 58.048 33.333 5.61 3.93 44.80 3.07
224 225 9.693739 TTCTGGTGTTTATTGTAATACCATGAT 57.306 29.630 5.61 0.00 44.80 2.45
225 226 9.693739 TCTGGTGTTTATTGTAATACCATGATT 57.306 29.630 5.61 0.00 44.80 2.57
226 227 9.734620 CTGGTGTTTATTGTAATACCATGATTG 57.265 33.333 5.61 0.00 44.80 2.67
227 228 9.467796 TGGTGTTTATTGTAATACCATGATTGA 57.532 29.630 0.00 0.00 42.22 2.57
309 310 1.899814 TCCAAATGCTAGGTCTGACGT 59.100 47.619 8.19 8.19 0.00 4.34
600 1018 9.899661 ACTATATTTGTGGAAACTGCTATACAA 57.100 29.630 0.00 0.00 0.00 2.41
646 1064 2.858839 TGATACGCGTGTGTCTTGTAG 58.141 47.619 24.59 0.00 37.16 2.74
660 1078 6.202762 TGTGTCTTGTAGAATCAACACATGAC 59.797 38.462 0.00 15.25 41.93 3.06
707 1125 9.794719 TGCTTGTTCTATAGAGTATAGAGCTTA 57.205 33.333 14.94 6.35 45.58 3.09
773 1205 2.159310 ACATTAGACAGAGAGCAGACGC 60.159 50.000 0.00 0.00 38.99 5.19
1183 4795 5.276868 CCGTTCTAACATTTGCTAATCTCCG 60.277 44.000 0.00 0.00 0.00 4.63
1191 4803 4.386867 TTTGCTAATCTCCGTTCGATCT 57.613 40.909 0.00 0.00 0.00 2.75
1222 4835 8.157476 ACAGTGATACTTCATTTGTACTTCCTT 58.843 33.333 0.00 0.00 33.43 3.36
1224 4837 7.545965 AGTGATACTTCATTTGTACTTCCTTCG 59.454 37.037 0.00 0.00 33.56 3.79
1235 4848 8.882415 TTTGTACTTCCTTCGATCCATATTAC 57.118 34.615 0.00 0.00 0.00 1.89
1238 4851 9.358406 TGTACTTCCTTCGATCCATATTACTTA 57.642 33.333 0.00 0.00 0.00 2.24
1316 5059 5.314718 TCAGATGATATGGCAAGGAATGT 57.685 39.130 0.00 0.00 0.00 2.71
1344 5087 4.344865 GCCTTGGAAGGGGCGACA 62.345 66.667 7.54 0.00 46.56 4.35
1349 5092 3.706373 GGAAGGGGCGACAGAGCA 61.706 66.667 0.00 0.00 39.27 4.26
1481 5224 7.117956 GGTACTTTACTTAGTTCTTCAGCCTTG 59.882 40.741 0.00 0.00 0.00 3.61
1507 5265 3.708631 ACATTGGAGTACTAGCTGCTGAT 59.291 43.478 13.43 2.35 0.00 2.90
1653 5411 2.095110 TGTGGTAATGACGTCGTCGATT 60.095 45.455 19.81 19.69 40.62 3.34
1662 5420 1.430632 GTCGTCGATTGGCTCCGTA 59.569 57.895 0.00 0.00 0.00 4.02
1847 5635 1.822371 TGGTACTGCTATGCGAAGACA 59.178 47.619 0.00 0.00 0.00 3.41
2048 5836 3.823330 GTCCAGGACGTCGCGGAT 61.823 66.667 22.85 0.00 0.00 4.18
2156 5944 1.125093 TCCTCGCCAAGTTCTTCCCA 61.125 55.000 0.00 0.00 0.00 4.37
2190 5978 1.841556 ACGAGGTGCAAGGAAGGGA 60.842 57.895 0.00 0.00 0.00 4.20
2193 5981 3.056328 GGTGCAAGGAAGGGACGC 61.056 66.667 0.00 0.00 0.00 5.19
2348 6136 3.055819 ACGCTGATATGTCCTGACAACTT 60.056 43.478 3.79 0.00 45.41 2.66
2350 6138 3.553511 GCTGATATGTCCTGACAACTTCG 59.446 47.826 3.79 0.00 45.41 3.79
2371 6165 3.547746 GTGGTCACCTTGGTCAAGTTAA 58.452 45.455 9.51 0.00 36.72 2.01
2372 6166 3.314357 GTGGTCACCTTGGTCAAGTTAAC 59.686 47.826 9.51 0.00 36.72 2.01
2373 6167 3.201266 TGGTCACCTTGGTCAAGTTAACT 59.799 43.478 1.12 1.12 36.72 2.24
2374 6168 4.204799 GGTCACCTTGGTCAAGTTAACTT 58.795 43.478 15.22 15.22 36.72 2.66
2427 6222 5.883661 AGTCGTGGCATTGAATTCTTTATG 58.116 37.500 7.05 8.79 0.00 1.90
2509 6304 7.136289 TGATGTTTACCTATCGTTTTTGTCC 57.864 36.000 0.00 0.00 0.00 4.02
2521 6316 1.638529 TTTTGTCCGGGCCATGATTT 58.361 45.000 2.12 0.00 0.00 2.17
2581 6485 6.677781 TGTGTTATATTAACTTGCAGAGGC 57.322 37.500 0.00 0.00 41.68 4.70
2603 6507 8.225603 AGGCACTACAATATTGTTATCCTTTG 57.774 34.615 25.31 12.78 42.35 2.77
2604 6508 6.918022 GGCACTACAATATTGTTATCCTTTGC 59.082 38.462 25.31 19.63 42.35 3.68
2605 6509 6.918022 GCACTACAATATTGTTATCCTTTGCC 59.082 38.462 25.31 6.47 42.35 4.52
2606 6510 7.132213 CACTACAATATTGTTATCCTTTGCCG 58.868 38.462 25.31 4.06 42.35 5.69
2698 6609 4.093408 GTGCCCATTATGTCATACTATGCG 59.907 45.833 0.00 0.00 0.00 4.73
2802 6713 6.954684 TCTAGAACTTGAACTCTAGTGGGATT 59.045 38.462 6.12 0.00 41.26 3.01
2810 6721 3.926616 ACTCTAGTGGGATTGTTTCACG 58.073 45.455 0.00 0.00 36.60 4.35
2839 6766 4.767578 AGCTGACCATCTGACATACATT 57.232 40.909 0.00 0.00 0.00 2.71
2849 6776 4.991776 TCTGACATACATTGGGTTTTCCA 58.008 39.130 0.00 0.00 45.43 3.53
2862 6789 5.893500 TGGGTTTTCCACAATAACCATAGA 58.106 37.500 0.00 0.00 42.44 1.98
2863 6790 6.315714 TGGGTTTTCCACAATAACCATAGAA 58.684 36.000 0.00 0.00 42.44 2.10
2864 6791 6.957020 TGGGTTTTCCACAATAACCATAGAAT 59.043 34.615 0.00 0.00 42.44 2.40
2865 6792 7.093552 TGGGTTTTCCACAATAACCATAGAATG 60.094 37.037 0.00 0.00 42.44 2.67
2866 6793 7.093509 GGGTTTTCCACAATAACCATAGAATGT 60.094 37.037 0.00 0.00 42.44 2.71
2867 6794 8.311109 GGTTTTCCACAATAACCATAGAATGTT 58.689 33.333 0.00 0.00 40.77 2.71
2868 6795 9.705290 GTTTTCCACAATAACCATAGAATGTTT 57.295 29.630 0.00 0.00 0.00 2.83
2931 6858 8.918202 TTATAAGAGGAGAAAGCAAAAAGTGA 57.082 30.769 0.00 0.00 0.00 3.41
2932 6859 5.764487 AAGAGGAGAAAGCAAAAAGTGAG 57.236 39.130 0.00 0.00 0.00 3.51
2933 6860 5.041191 AGAGGAGAAAGCAAAAAGTGAGA 57.959 39.130 0.00 0.00 0.00 3.27
2934 6861 5.629125 AGAGGAGAAAGCAAAAAGTGAGAT 58.371 37.500 0.00 0.00 0.00 2.75
2935 6862 6.773638 AGAGGAGAAAGCAAAAAGTGAGATA 58.226 36.000 0.00 0.00 0.00 1.98
2936 6863 6.652900 AGAGGAGAAAGCAAAAAGTGAGATAC 59.347 38.462 0.00 0.00 0.00 2.24
2937 6864 6.299141 AGGAGAAAGCAAAAAGTGAGATACA 58.701 36.000 0.00 0.00 0.00 2.29
2938 6865 6.772716 AGGAGAAAGCAAAAAGTGAGATACAA 59.227 34.615 0.00 0.00 0.00 2.41
2939 6866 7.449704 AGGAGAAAGCAAAAAGTGAGATACAAT 59.550 33.333 0.00 0.00 0.00 2.71
2940 6867 7.540055 GGAGAAAGCAAAAAGTGAGATACAATG 59.460 37.037 0.00 0.00 0.00 2.82
2941 6868 7.373493 AGAAAGCAAAAAGTGAGATACAATGG 58.627 34.615 0.00 0.00 0.00 3.16
2942 6869 6.899393 AAGCAAAAAGTGAGATACAATGGA 57.101 33.333 0.00 0.00 0.00 3.41
2943 6870 6.899393 AGCAAAAAGTGAGATACAATGGAA 57.101 33.333 0.00 0.00 0.00 3.53
2944 6871 7.288810 AGCAAAAAGTGAGATACAATGGAAA 57.711 32.000 0.00 0.00 0.00 3.13
2945 6872 7.899973 AGCAAAAAGTGAGATACAATGGAAAT 58.100 30.769 0.00 0.00 0.00 2.17
2946 6873 8.370182 AGCAAAAAGTGAGATACAATGGAAATT 58.630 29.630 0.00 0.00 0.00 1.82
2947 6874 8.650714 GCAAAAAGTGAGATACAATGGAAATTC 58.349 33.333 0.00 0.00 0.00 2.17
2948 6875 9.695526 CAAAAAGTGAGATACAATGGAAATTCA 57.304 29.630 0.00 0.00 0.00 2.57
2950 6877 9.696917 AAAAGTGAGATACAATGGAAATTCAAC 57.303 29.630 0.00 0.00 0.00 3.18
2951 6878 8.641498 AAGTGAGATACAATGGAAATTCAACT 57.359 30.769 0.00 0.00 0.00 3.16
2952 6879 9.739276 AAGTGAGATACAATGGAAATTCAACTA 57.261 29.630 0.00 0.00 0.00 2.24
2953 6880 9.739276 AGTGAGATACAATGGAAATTCAACTAA 57.261 29.630 0.00 0.00 0.00 2.24
2958 6885 9.750125 GATACAATGGAAATTCAACTAATTCCC 57.250 33.333 0.00 0.00 36.76 3.97
2959 6886 7.797121 ACAATGGAAATTCAACTAATTCCCT 57.203 32.000 0.00 0.00 33.25 4.20
2960 6887 7.614494 ACAATGGAAATTCAACTAATTCCCTG 58.386 34.615 0.00 0.00 33.25 4.45
2961 6888 7.235399 ACAATGGAAATTCAACTAATTCCCTGT 59.765 33.333 0.00 0.00 33.25 4.00
2962 6889 6.834168 TGGAAATTCAACTAATTCCCTGTC 57.166 37.500 0.00 0.00 33.25 3.51
2963 6890 6.552008 TGGAAATTCAACTAATTCCCTGTCT 58.448 36.000 0.00 0.00 33.25 3.41
2964 6891 7.010160 TGGAAATTCAACTAATTCCCTGTCTT 58.990 34.615 0.00 0.00 33.25 3.01
2965 6892 7.039784 TGGAAATTCAACTAATTCCCTGTCTTG 60.040 37.037 0.00 0.00 33.25 3.02
2966 6893 6.840780 AATTCAACTAATTCCCTGTCTTGG 57.159 37.500 0.00 0.00 32.00 3.61
2967 6894 4.993705 TCAACTAATTCCCTGTCTTGGT 57.006 40.909 0.00 0.00 0.00 3.67
2968 6895 6.442541 TTCAACTAATTCCCTGTCTTGGTA 57.557 37.500 0.00 0.00 0.00 3.25
2969 6896 6.442541 TCAACTAATTCCCTGTCTTGGTAA 57.557 37.500 0.00 0.00 0.00 2.85
2970 6897 6.235664 TCAACTAATTCCCTGTCTTGGTAAC 58.764 40.000 0.00 0.00 0.00 2.50
3023 6950 9.638239 GACTGAGATAAGTCTATGGAAATGATC 57.362 37.037 0.00 0.00 42.78 2.92
3024 6951 9.378504 ACTGAGATAAGTCTATGGAAATGATCT 57.621 33.333 0.00 0.00 33.97 2.75
3027 6954 9.651913 GAGATAAGTCTATGGAAATGATCTTCC 57.348 37.037 6.76 6.76 39.15 3.46
3035 6962 4.827304 GGAAATGATCTTCCAAGCTAGC 57.173 45.455 6.62 6.62 43.84 3.42
3036 6963 4.202441 GGAAATGATCTTCCAAGCTAGCA 58.798 43.478 18.83 0.00 43.84 3.49
3037 6964 4.275443 GGAAATGATCTTCCAAGCTAGCAG 59.725 45.833 18.83 8.92 43.84 4.24
3038 6965 4.767578 AATGATCTTCCAAGCTAGCAGA 57.232 40.909 18.83 10.88 0.00 4.26
3039 6966 4.978438 ATGATCTTCCAAGCTAGCAGAT 57.022 40.909 18.83 15.39 0.00 2.90
3040 6967 4.767578 TGATCTTCCAAGCTAGCAGATT 57.232 40.909 18.83 0.00 0.00 2.40
3041 6968 5.876651 TGATCTTCCAAGCTAGCAGATTA 57.123 39.130 18.83 9.69 0.00 1.75
3042 6969 5.605534 TGATCTTCCAAGCTAGCAGATTAC 58.394 41.667 18.83 5.75 0.00 1.89
3043 6970 5.129320 TGATCTTCCAAGCTAGCAGATTACA 59.871 40.000 18.83 8.15 0.00 2.41
3044 6971 5.420725 TCTTCCAAGCTAGCAGATTACAA 57.579 39.130 18.83 0.00 0.00 2.41
3045 6972 5.423015 TCTTCCAAGCTAGCAGATTACAAG 58.577 41.667 18.83 9.09 0.00 3.16
3046 6973 4.826274 TCCAAGCTAGCAGATTACAAGT 57.174 40.909 18.83 0.00 0.00 3.16
3047 6974 5.165961 TCCAAGCTAGCAGATTACAAGTT 57.834 39.130 18.83 0.00 0.00 2.66
3048 6975 6.294361 TCCAAGCTAGCAGATTACAAGTTA 57.706 37.500 18.83 0.00 0.00 2.24
3049 6976 6.889198 TCCAAGCTAGCAGATTACAAGTTAT 58.111 36.000 18.83 0.00 0.00 1.89
3050 6977 7.338710 TCCAAGCTAGCAGATTACAAGTTATT 58.661 34.615 18.83 0.00 0.00 1.40
3051 6978 7.280876 TCCAAGCTAGCAGATTACAAGTTATTG 59.719 37.037 18.83 7.02 42.46 1.90
3052 6979 7.412853 CAAGCTAGCAGATTACAAGTTATTGG 58.587 38.462 18.83 0.00 40.97 3.16
3053 6980 6.889198 AGCTAGCAGATTACAAGTTATTGGA 58.111 36.000 18.83 0.00 40.97 3.53
3054 6981 7.512992 AGCTAGCAGATTACAAGTTATTGGAT 58.487 34.615 18.83 0.00 40.97 3.41
3055 6982 7.995488 AGCTAGCAGATTACAAGTTATTGGATT 59.005 33.333 18.83 0.00 40.97 3.01
3056 6983 8.072567 GCTAGCAGATTACAAGTTATTGGATTG 58.927 37.037 10.63 0.00 40.97 2.67
3057 6984 9.330063 CTAGCAGATTACAAGTTATTGGATTGA 57.670 33.333 0.00 0.00 40.97 2.57
3058 6985 8.218338 AGCAGATTACAAGTTATTGGATTGAG 57.782 34.615 0.00 0.00 40.97 3.02
3059 6986 8.049117 AGCAGATTACAAGTTATTGGATTGAGA 58.951 33.333 0.00 0.00 40.97 3.27
3060 6987 8.677300 GCAGATTACAAGTTATTGGATTGAGAA 58.323 33.333 0.00 0.00 40.97 2.87
3075 7002 7.663827 TGGATTGAGAATTTATCATTGATGGC 58.336 34.615 9.46 0.00 0.00 4.40
3076 7003 7.288158 TGGATTGAGAATTTATCATTGATGGCA 59.712 33.333 9.46 0.00 0.00 4.92
3077 7004 8.145767 GGATTGAGAATTTATCATTGATGGCAA 58.854 33.333 9.46 0.55 38.60 4.52
3078 7005 9.537192 GATTGAGAATTTATCATTGATGGCAAA 57.463 29.630 9.46 2.84 37.59 3.68
3079 7006 9.893634 ATTGAGAATTTATCATTGATGGCAAAA 57.106 25.926 9.46 2.50 37.59 2.44
3080 7007 8.936070 TGAGAATTTATCATTGATGGCAAAAG 57.064 30.769 9.46 0.00 37.59 2.27
3081 7008 8.751242 TGAGAATTTATCATTGATGGCAAAAGA 58.249 29.630 9.46 0.00 37.59 2.52
3082 7009 9.590451 GAGAATTTATCATTGATGGCAAAAGAA 57.410 29.630 9.46 0.00 37.59 2.52
3085 7012 7.542534 TTTATCATTGATGGCAAAAGAATGC 57.457 32.000 9.46 0.00 45.67 3.56
3094 7021 2.593257 GCAAAAGAATGCAGCTCTCAC 58.407 47.619 1.78 0.00 45.70 3.51
3095 7022 2.030540 GCAAAAGAATGCAGCTCTCACA 60.031 45.455 1.78 0.00 45.70 3.58
3096 7023 3.551454 GCAAAAGAATGCAGCTCTCACAA 60.551 43.478 1.78 0.00 45.70 3.33
3097 7024 4.806330 CAAAAGAATGCAGCTCTCACAAT 58.194 39.130 1.78 0.00 0.00 2.71
3098 7025 5.620654 GCAAAAGAATGCAGCTCTCACAATA 60.621 40.000 1.78 0.00 45.70 1.90
3099 7026 6.384224 CAAAAGAATGCAGCTCTCACAATAA 58.616 36.000 1.78 0.00 0.00 1.40
3100 7027 5.557891 AAGAATGCAGCTCTCACAATAAC 57.442 39.130 1.78 0.00 0.00 1.89
3101 7028 3.944015 AGAATGCAGCTCTCACAATAACC 59.056 43.478 0.00 0.00 0.00 2.85
3102 7029 2.857186 TGCAGCTCTCACAATAACCA 57.143 45.000 0.00 0.00 0.00 3.67
3202 7129 5.559770 ACAATGGAAATTCAACCAATTCCC 58.440 37.500 0.00 0.00 39.69 3.97
3293 7220 6.294361 TCCAAGCTAGCAGATTACAAGTTA 57.706 37.500 18.83 0.00 0.00 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
131 132 9.710900 GTTGAATCTGTTGGGATTCTTAAATTT 57.289 29.630 15.21 0.00 46.79 1.82
132 133 8.028938 CGTTGAATCTGTTGGGATTCTTAAATT 58.971 33.333 15.21 0.00 46.79 1.82
133 134 7.362920 CCGTTGAATCTGTTGGGATTCTTAAAT 60.363 37.037 15.21 0.00 46.79 1.40
134 135 6.072175 CCGTTGAATCTGTTGGGATTCTTAAA 60.072 38.462 15.21 2.94 46.79 1.52
136 137 4.941263 CCGTTGAATCTGTTGGGATTCTTA 59.059 41.667 15.21 4.52 46.79 2.10
137 138 3.758554 CCGTTGAATCTGTTGGGATTCTT 59.241 43.478 15.21 0.00 46.79 2.52
138 139 3.347216 CCGTTGAATCTGTTGGGATTCT 58.653 45.455 15.21 0.00 46.79 2.40
139 140 2.159379 GCCGTTGAATCTGTTGGGATTC 60.159 50.000 9.45 9.45 46.82 2.52
140 141 1.818674 GCCGTTGAATCTGTTGGGATT 59.181 47.619 0.00 0.00 38.47 3.01
143 144 1.501741 CGCCGTTGAATCTGTTGGG 59.498 57.895 0.00 0.00 0.00 4.12
146 147 1.868997 CTGCGCCGTTGAATCTGTT 59.131 52.632 4.18 0.00 0.00 3.16
147 148 2.680913 GCTGCGCCGTTGAATCTGT 61.681 57.895 4.18 0.00 0.00 3.41
148 149 2.099062 GCTGCGCCGTTGAATCTG 59.901 61.111 4.18 0.00 0.00 2.90
149 150 1.514678 TTTGCTGCGCCGTTGAATCT 61.515 50.000 4.18 0.00 0.00 2.40
151 152 1.081242 CTTTGCTGCGCCGTTGAAT 60.081 52.632 4.18 0.00 0.00 2.57
152 153 2.331098 CTTTGCTGCGCCGTTGAA 59.669 55.556 4.18 0.00 0.00 2.69
153 154 4.326766 GCTTTGCTGCGCCGTTGA 62.327 61.111 4.18 0.00 0.00 3.18
170 171 2.511600 CTAGAAGGGTTGGGCGCG 60.512 66.667 0.00 0.00 34.93 6.86
171 172 1.002502 AACTAGAAGGGTTGGGCGC 60.003 57.895 0.00 0.00 0.00 6.53
172 173 0.036306 ACAACTAGAAGGGTTGGGCG 59.964 55.000 0.00 0.00 45.61 6.13
173 174 2.287977 AACAACTAGAAGGGTTGGGC 57.712 50.000 0.00 0.00 45.61 5.36
174 175 6.718294 ACTAATAACAACTAGAAGGGTTGGG 58.282 40.000 0.00 0.00 45.61 4.12
175 176 8.101419 AGAACTAATAACAACTAGAAGGGTTGG 58.899 37.037 0.00 0.00 45.61 3.77
176 177 8.936864 CAGAACTAATAACAACTAGAAGGGTTG 58.063 37.037 0.00 5.23 46.42 3.77
178 179 7.237055 ACCAGAACTAATAACAACTAGAAGGGT 59.763 37.037 0.00 0.00 0.00 4.34
179 180 7.549488 CACCAGAACTAATAACAACTAGAAGGG 59.451 40.741 0.00 0.00 0.00 3.95
180 181 8.095169 ACACCAGAACTAATAACAACTAGAAGG 58.905 37.037 0.00 0.00 0.00 3.46
181 182 9.490379 AACACCAGAACTAATAACAACTAGAAG 57.510 33.333 0.00 0.00 0.00 2.85
182 183 9.841295 AAACACCAGAACTAATAACAACTAGAA 57.159 29.630 0.00 0.00 0.00 2.10
196 197 8.956426 CATGGTATTACAATAAACACCAGAACT 58.044 33.333 9.80 0.00 0.00 3.01
197 198 8.952278 TCATGGTATTACAATAAACACCAGAAC 58.048 33.333 9.80 0.00 0.00 3.01
198 199 9.693739 ATCATGGTATTACAATAAACACCAGAA 57.306 29.630 9.80 3.69 0.00 3.02
199 200 9.693739 AATCATGGTATTACAATAAACACCAGA 57.306 29.630 9.80 8.24 0.00 3.86
200 201 9.734620 CAATCATGGTATTACAATAAACACCAG 57.265 33.333 9.80 4.89 0.00 4.00
201 202 9.467796 TCAATCATGGTATTACAATAAACACCA 57.532 29.630 0.00 7.49 0.00 4.17
600 1018 6.478673 TGTGTTGATCATAATTCGACGCTAAT 59.521 34.615 0.00 0.00 38.35 1.73
604 1022 4.514545 TGTGTTGATCATAATTCGACGC 57.485 40.909 0.00 0.00 38.12 5.19
640 1058 5.611919 CGTGTCATGTGTTGATTCTACAAG 58.388 41.667 2.47 0.00 36.54 3.16
646 1064 1.194547 ACGCGTGTCATGTGTTGATTC 59.805 47.619 12.93 0.00 36.54 2.52
660 1078 1.421485 GATCTTGCCTTCACGCGTG 59.579 57.895 32.76 32.76 0.00 5.34
707 1125 0.254178 ACAGCGGCTGGATCAGATTT 59.746 50.000 31.38 6.54 35.51 2.17
773 1205 9.715123 GTTTCTTTTTAAATTTGGGTCAATGTG 57.285 29.630 0.00 0.00 0.00 3.21
857 1302 2.469516 CCGCTTTGTGGCCGGTATC 61.470 63.158 1.90 0.00 0.00 2.24
1183 4795 5.403246 AGTATCACTGTCACAAGATCGAAC 58.597 41.667 0.00 0.00 0.00 3.95
1191 4803 7.931407 AGTACAAATGAAGTATCACTGTCACAA 59.069 33.333 0.00 0.00 38.69 3.33
1222 4835 4.921515 GCAGCGTTAAGTAATATGGATCGA 59.078 41.667 0.00 0.00 0.00 3.59
1224 4837 6.787085 AAGCAGCGTTAAGTAATATGGATC 57.213 37.500 0.00 0.00 0.00 3.36
1235 4848 4.927425 TCCTTGTACTAAAGCAGCGTTAAG 59.073 41.667 2.27 0.00 0.00 1.85
1238 4851 3.244112 ACTCCTTGTACTAAAGCAGCGTT 60.244 43.478 0.00 0.00 0.00 4.84
1291 5034 6.608405 ACATTCCTTGCCATATCATCTGAAAA 59.392 34.615 0.00 0.00 0.00 2.29
1316 5059 1.418097 TTCCAAGGCTCTCAGGTGCA 61.418 55.000 0.00 0.00 34.07 4.57
1344 5087 1.264045 GGAAGAGGGTCAGCTGCTCT 61.264 60.000 14.49 14.49 0.00 4.09
1349 5092 2.685380 CCCGGAAGAGGGTCAGCT 60.685 66.667 0.73 0.00 46.38 4.24
1481 5224 1.486726 AGCTAGTACTCCAATGTGGGC 59.513 52.381 0.00 0.00 38.32 5.36
1507 5265 3.055747 TGTCAGCCACCGTACATTTGATA 60.056 43.478 0.00 0.00 0.00 2.15
1662 5420 2.488545 GCTACGACGAGGATCCATGTAT 59.511 50.000 15.82 6.24 0.00 2.29
2156 5944 3.001406 GTGGGCACGGGGTACTCT 61.001 66.667 0.00 0.00 0.00 3.24
2190 5978 1.517257 CCTTCTTCATCTCGCGCGT 60.517 57.895 30.98 7.84 0.00 6.01
2193 5981 0.807667 CACCCCTTCTTCATCTCGCG 60.808 60.000 0.00 0.00 0.00 5.87
2261 6049 1.649390 CGTAGAGACACTGGCTCGCT 61.649 60.000 6.23 0.00 37.46 4.93
2348 6136 0.105964 CTTGACCAAGGTGACCACGA 59.894 55.000 3.63 0.00 34.87 4.35
2350 6138 2.052782 AACTTGACCAAGGTGACCAC 57.947 50.000 3.63 0.00 42.53 4.16
2381 6175 2.289274 TGTAATATCAAACGGGCATGCG 59.711 45.455 12.44 0.62 0.00 4.73
2458 6253 6.773638 ACATATTCTTCTGACAAAGGACACT 58.226 36.000 0.00 0.00 0.00 3.55
2503 6298 1.638529 AAAATCATGGCCCGGACAAA 58.361 45.000 0.73 0.00 0.00 2.83
2509 6304 4.454504 GGTAGTATGTAAAATCATGGCCCG 59.545 45.833 0.00 0.00 0.00 6.13
2574 6478 6.073003 GGATAACAATATTGTAGTGCCTCTGC 60.073 42.308 21.07 0.00 41.31 4.26
2581 6485 7.011950 TCGGCAAAGGATAACAATATTGTAGTG 59.988 37.037 21.07 11.87 41.31 2.74
2583 6487 7.490962 TCGGCAAAGGATAACAATATTGTAG 57.509 36.000 21.07 5.88 41.31 2.74
2586 6490 8.472683 TTTTTCGGCAAAGGATAACAATATTG 57.527 30.769 14.01 14.01 0.00 1.90
2595 6499 8.974060 ATATTCTACTTTTTCGGCAAAGGATA 57.026 30.769 10.73 5.45 37.98 2.59
2603 6507 8.911247 AAATCACAATATTCTACTTTTTCGGC 57.089 30.769 0.00 0.00 0.00 5.54
2698 6609 6.121613 ACGACTATGTTAGAGTTGCTCTAC 57.878 41.667 5.46 3.17 41.99 2.59
2748 6659 3.350612 TGCTCGCGTTTTTCCGGG 61.351 61.111 5.77 0.00 41.57 5.73
2778 6689 6.783708 ATCCCACTAGAGTTCAAGTTCTAG 57.216 41.667 0.00 6.92 45.35 2.43
2839 6766 5.893500 TCTATGGTTATTGTGGAAAACCCA 58.106 37.500 1.30 0.00 41.66 4.51
2905 6832 9.349713 TCACTTTTTGCTTTCTCCTCTTATAAA 57.650 29.630 0.00 0.00 0.00 1.40
2906 6833 8.918202 TCACTTTTTGCTTTCTCCTCTTATAA 57.082 30.769 0.00 0.00 0.00 0.98
2907 6834 8.375506 TCTCACTTTTTGCTTTCTCCTCTTATA 58.624 33.333 0.00 0.00 0.00 0.98
2908 6835 7.227156 TCTCACTTTTTGCTTTCTCCTCTTAT 58.773 34.615 0.00 0.00 0.00 1.73
2909 6836 6.591935 TCTCACTTTTTGCTTTCTCCTCTTA 58.408 36.000 0.00 0.00 0.00 2.10
2910 6837 5.440610 TCTCACTTTTTGCTTTCTCCTCTT 58.559 37.500 0.00 0.00 0.00 2.85
2911 6838 5.041191 TCTCACTTTTTGCTTTCTCCTCT 57.959 39.130 0.00 0.00 0.00 3.69
2912 6839 5.956068 ATCTCACTTTTTGCTTTCTCCTC 57.044 39.130 0.00 0.00 0.00 3.71
2913 6840 6.299141 TGTATCTCACTTTTTGCTTTCTCCT 58.701 36.000 0.00 0.00 0.00 3.69
2914 6841 6.560253 TGTATCTCACTTTTTGCTTTCTCC 57.440 37.500 0.00 0.00 0.00 3.71
2915 6842 7.540055 CCATTGTATCTCACTTTTTGCTTTCTC 59.460 37.037 0.00 0.00 0.00 2.87
2916 6843 7.231317 TCCATTGTATCTCACTTTTTGCTTTCT 59.769 33.333 0.00 0.00 0.00 2.52
2917 6844 7.370383 TCCATTGTATCTCACTTTTTGCTTTC 58.630 34.615 0.00 0.00 0.00 2.62
2918 6845 7.288810 TCCATTGTATCTCACTTTTTGCTTT 57.711 32.000 0.00 0.00 0.00 3.51
2919 6846 6.899393 TCCATTGTATCTCACTTTTTGCTT 57.101 33.333 0.00 0.00 0.00 3.91
2920 6847 6.899393 TTCCATTGTATCTCACTTTTTGCT 57.101 33.333 0.00 0.00 0.00 3.91
2921 6848 8.538409 AATTTCCATTGTATCTCACTTTTTGC 57.462 30.769 0.00 0.00 0.00 3.68
2922 6849 9.695526 TGAATTTCCATTGTATCTCACTTTTTG 57.304 29.630 0.00 0.00 0.00 2.44
2924 6851 9.696917 GTTGAATTTCCATTGTATCTCACTTTT 57.303 29.630 0.00 0.00 0.00 2.27
2925 6852 9.082313 AGTTGAATTTCCATTGTATCTCACTTT 57.918 29.630 0.00 0.00 0.00 2.66
2926 6853 8.641498 AGTTGAATTTCCATTGTATCTCACTT 57.359 30.769 0.00 0.00 0.00 3.16
2927 6854 9.739276 TTAGTTGAATTTCCATTGTATCTCACT 57.261 29.630 0.00 0.00 0.00 3.41
2941 6868 7.039714 ACCAAGACAGGGAATTAGTTGAATTTC 60.040 37.037 0.00 0.00 37.90 2.17
2942 6869 6.782494 ACCAAGACAGGGAATTAGTTGAATTT 59.218 34.615 0.00 0.00 37.90 1.82
2943 6870 6.314917 ACCAAGACAGGGAATTAGTTGAATT 58.685 36.000 0.00 0.00 40.62 2.17
2944 6871 5.892348 ACCAAGACAGGGAATTAGTTGAAT 58.108 37.500 0.00 0.00 0.00 2.57
2945 6872 5.319043 ACCAAGACAGGGAATTAGTTGAA 57.681 39.130 0.00 0.00 0.00 2.69
2946 6873 4.993705 ACCAAGACAGGGAATTAGTTGA 57.006 40.909 0.00 0.00 0.00 3.18
2947 6874 6.001460 TGTTACCAAGACAGGGAATTAGTTG 58.999 40.000 0.00 0.00 33.09 3.16
2948 6875 6.195600 TGTTACCAAGACAGGGAATTAGTT 57.804 37.500 0.00 0.00 33.09 2.24
2949 6876 5.836024 TGTTACCAAGACAGGGAATTAGT 57.164 39.130 0.00 0.00 33.09 2.24
2950 6877 6.414732 TCATGTTACCAAGACAGGGAATTAG 58.585 40.000 0.00 0.00 33.09 1.73
2951 6878 6.381498 TCATGTTACCAAGACAGGGAATTA 57.619 37.500 0.00 0.00 33.09 1.40
2952 6879 5.255397 TCATGTTACCAAGACAGGGAATT 57.745 39.130 0.00 0.00 33.09 2.17
2953 6880 4.927267 TCATGTTACCAAGACAGGGAAT 57.073 40.909 0.00 0.00 33.09 3.01
2954 6881 4.588899 CATCATGTTACCAAGACAGGGAA 58.411 43.478 0.00 0.00 30.36 3.97
2955 6882 3.622206 GCATCATGTTACCAAGACAGGGA 60.622 47.826 0.00 0.00 30.36 4.20
2956 6883 2.684881 GCATCATGTTACCAAGACAGGG 59.315 50.000 0.00 0.00 30.36 4.45
2957 6884 2.352651 CGCATCATGTTACCAAGACAGG 59.647 50.000 0.00 0.00 0.00 4.00
2958 6885 3.002791 ACGCATCATGTTACCAAGACAG 58.997 45.455 0.00 0.00 0.00 3.51
2959 6886 3.052455 ACGCATCATGTTACCAAGACA 57.948 42.857 0.00 0.00 0.00 3.41
2960 6887 5.539582 TTTACGCATCATGTTACCAAGAC 57.460 39.130 0.00 0.00 0.00 3.01
2961 6888 6.561737 TTTTTACGCATCATGTTACCAAGA 57.438 33.333 0.00 0.00 0.00 3.02
2997 6924 9.638239 GATCATTTCCATAGACTTATCTCAGTC 57.362 37.037 0.00 0.00 43.26 3.51
2998 6925 9.378504 AGATCATTTCCATAGACTTATCTCAGT 57.621 33.333 0.00 0.00 36.29 3.41
3001 6928 9.651913 GGAAGATCATTTCCATAGACTTATCTC 57.348 37.037 8.51 0.00 44.90 2.75
3014 6941 4.202441 TGCTAGCTTGGAAGATCATTTCC 58.798 43.478 17.23 6.76 45.59 3.13
3015 6942 5.121811 TCTGCTAGCTTGGAAGATCATTTC 58.878 41.667 17.23 0.00 0.00 2.17
3016 6943 5.108187 TCTGCTAGCTTGGAAGATCATTT 57.892 39.130 17.23 0.00 0.00 2.32
3017 6944 4.767578 TCTGCTAGCTTGGAAGATCATT 57.232 40.909 17.23 0.00 0.00 2.57
3018 6945 4.978438 ATCTGCTAGCTTGGAAGATCAT 57.022 40.909 17.23 0.00 0.00 2.45
3019 6946 4.767578 AATCTGCTAGCTTGGAAGATCA 57.232 40.909 17.23 0.00 29.44 2.92
3020 6947 5.605534 TGTAATCTGCTAGCTTGGAAGATC 58.394 41.667 17.23 5.23 29.44 2.75
3021 6948 5.620738 TGTAATCTGCTAGCTTGGAAGAT 57.379 39.130 17.23 12.17 30.85 2.40
3022 6949 5.046304 ACTTGTAATCTGCTAGCTTGGAAGA 60.046 40.000 17.23 10.23 0.00 2.87
3023 6950 5.181748 ACTTGTAATCTGCTAGCTTGGAAG 58.818 41.667 17.23 4.35 0.00 3.46
3024 6951 5.165961 ACTTGTAATCTGCTAGCTTGGAA 57.834 39.130 17.23 0.00 0.00 3.53
3025 6952 4.826274 ACTTGTAATCTGCTAGCTTGGA 57.174 40.909 17.23 11.68 0.00 3.53
3026 6953 7.412853 CAATAACTTGTAATCTGCTAGCTTGG 58.587 38.462 17.23 6.44 0.00 3.61
3027 6954 7.280876 TCCAATAACTTGTAATCTGCTAGCTTG 59.719 37.037 17.23 9.05 0.00 4.01
3028 6955 7.338710 TCCAATAACTTGTAATCTGCTAGCTT 58.661 34.615 17.23 4.51 0.00 3.74
3029 6956 6.889198 TCCAATAACTTGTAATCTGCTAGCT 58.111 36.000 17.23 0.00 0.00 3.32
3030 6957 7.736447 ATCCAATAACTTGTAATCTGCTAGC 57.264 36.000 8.10 8.10 0.00 3.42
3031 6958 9.330063 TCAATCCAATAACTTGTAATCTGCTAG 57.670 33.333 0.00 0.00 0.00 3.42
3032 6959 9.330063 CTCAATCCAATAACTTGTAATCTGCTA 57.670 33.333 0.00 0.00 0.00 3.49
3033 6960 8.049117 TCTCAATCCAATAACTTGTAATCTGCT 58.951 33.333 0.00 0.00 0.00 4.24
3034 6961 8.213518 TCTCAATCCAATAACTTGTAATCTGC 57.786 34.615 0.00 0.00 0.00 4.26
3049 6976 8.145767 GCCATCAATGATAAATTCTCAATCCAA 58.854 33.333 0.00 0.00 0.00 3.53
3050 6977 7.288158 TGCCATCAATGATAAATTCTCAATCCA 59.712 33.333 0.00 0.00 0.00 3.41
3051 6978 7.663827 TGCCATCAATGATAAATTCTCAATCC 58.336 34.615 0.00 0.00 0.00 3.01
3052 6979 9.537192 TTTGCCATCAATGATAAATTCTCAATC 57.463 29.630 0.00 0.00 31.33 2.67
3053 6980 9.893634 TTTTGCCATCAATGATAAATTCTCAAT 57.106 25.926 0.00 0.00 31.33 2.57
3054 6981 9.373603 CTTTTGCCATCAATGATAAATTCTCAA 57.626 29.630 0.00 0.00 31.33 3.02
3055 6982 8.751242 TCTTTTGCCATCAATGATAAATTCTCA 58.249 29.630 0.00 0.00 31.33 3.27
3056 6983 9.590451 TTCTTTTGCCATCAATGATAAATTCTC 57.410 29.630 0.00 0.00 31.33 2.87
3059 6986 8.617809 GCATTCTTTTGCCATCAATGATAAATT 58.382 29.630 0.00 0.00 36.60 1.82
3060 6987 7.771361 TGCATTCTTTTGCCATCAATGATAAAT 59.229 29.630 0.00 0.00 42.06 1.40
3061 6988 7.104290 TGCATTCTTTTGCCATCAATGATAAA 58.896 30.769 0.00 0.00 42.06 1.40
3062 6989 6.641474 TGCATTCTTTTGCCATCAATGATAA 58.359 32.000 0.00 0.00 42.06 1.75
3063 6990 6.223351 TGCATTCTTTTGCCATCAATGATA 57.777 33.333 0.00 0.00 42.06 2.15
3064 6991 5.092554 TGCATTCTTTTGCCATCAATGAT 57.907 34.783 0.00 0.00 42.06 2.45
3065 6992 4.500127 CTGCATTCTTTTGCCATCAATGA 58.500 39.130 0.00 0.00 42.06 2.57
3066 6993 3.063452 GCTGCATTCTTTTGCCATCAATG 59.937 43.478 0.00 0.00 42.06 2.82
3067 6994 3.055385 AGCTGCATTCTTTTGCCATCAAT 60.055 39.130 1.02 0.00 42.06 2.57
3068 6995 2.300723 AGCTGCATTCTTTTGCCATCAA 59.699 40.909 1.02 0.00 42.06 2.57
3069 6996 1.897133 AGCTGCATTCTTTTGCCATCA 59.103 42.857 1.02 0.00 42.06 3.07
3070 6997 2.165845 AGAGCTGCATTCTTTTGCCATC 59.834 45.455 1.02 0.00 42.06 3.51
3071 6998 2.165845 GAGAGCTGCATTCTTTTGCCAT 59.834 45.455 1.02 0.00 42.06 4.40
3072 6999 1.542915 GAGAGCTGCATTCTTTTGCCA 59.457 47.619 1.02 0.00 42.06 4.92
3073 7000 1.542915 TGAGAGCTGCATTCTTTTGCC 59.457 47.619 1.02 0.00 42.06 4.52
3074 7001 2.030540 TGTGAGAGCTGCATTCTTTTGC 60.031 45.455 1.02 0.00 43.07 3.68
3075 7002 3.909776 TGTGAGAGCTGCATTCTTTTG 57.090 42.857 1.02 0.00 0.00 2.44
3076 7003 6.385033 GTTATTGTGAGAGCTGCATTCTTTT 58.615 36.000 1.02 0.00 0.00 2.27
3077 7004 5.105997 GGTTATTGTGAGAGCTGCATTCTTT 60.106 40.000 1.02 0.00 0.00 2.52
3078 7005 4.397417 GGTTATTGTGAGAGCTGCATTCTT 59.603 41.667 1.02 0.00 0.00 2.52
3079 7006 3.944015 GGTTATTGTGAGAGCTGCATTCT 59.056 43.478 1.02 0.00 0.00 2.40
3080 7007 3.691118 TGGTTATTGTGAGAGCTGCATTC 59.309 43.478 1.02 0.00 0.00 2.67
3081 7008 3.689347 TGGTTATTGTGAGAGCTGCATT 58.311 40.909 1.02 0.00 0.00 3.56
3082 7009 3.354948 TGGTTATTGTGAGAGCTGCAT 57.645 42.857 1.02 0.00 0.00 3.96
3083 7010 2.857186 TGGTTATTGTGAGAGCTGCA 57.143 45.000 1.02 0.00 0.00 4.41
3084 7011 4.697514 TCTATGGTTATTGTGAGAGCTGC 58.302 43.478 0.00 0.00 0.00 5.25
3085 7012 6.765036 ACATTCTATGGTTATTGTGAGAGCTG 59.235 38.462 0.00 0.00 33.60 4.24
3086 7013 6.893583 ACATTCTATGGTTATTGTGAGAGCT 58.106 36.000 0.00 0.00 33.60 4.09
3087 7014 7.559590 AACATTCTATGGTTATTGTGAGAGC 57.440 36.000 0.00 0.00 33.60 4.09
3171 7098 6.947733 TGGTTGAATTTCCATTGTATCTCACT 59.052 34.615 0.00 0.00 0.00 3.41
3202 7129 3.002791 ACGCATCATGTTACCAAGACAG 58.997 45.455 0.00 0.00 0.00 3.51
3293 7220 8.857098 CCATCAATGATAAATTCTCAGTCCAAT 58.143 33.333 0.00 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.