Multiple sequence alignment - TraesCS5D01G073200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G073200 chr5D 100.000 2822 0 0 1 2822 72548991 72546170 0.000000e+00 5212.0
1 TraesCS5D01G073200 chr5D 95.897 195 8 0 2570 2764 57921197 57921391 1.630000e-82 316.0
2 TraesCS5D01G073200 chr5B 95.360 2155 61 21 1 2143 81395824 81397951 0.000000e+00 3389.0
3 TraesCS5D01G073200 chr5B 91.905 420 33 1 2151 2569 272432227 272432646 1.130000e-163 586.0
4 TraesCS5D01G073200 chr5B 90.499 421 37 3 2150 2569 657876531 657876113 1.140000e-153 553.0
5 TraesCS5D01G073200 chr5A 93.562 2128 82 19 1 2104 64983237 64981141 0.000000e+00 3120.0
6 TraesCS5D01G073200 chr5A 93.909 197 12 0 2568 2764 520388656 520388852 5.910000e-77 298.0
7 TraesCS5D01G073200 chr5A 92.965 199 13 1 2573 2770 492525088 492524890 3.560000e-74 289.0
8 TraesCS5D01G073200 chr5A 100.000 60 0 0 790 849 7540191 7540132 8.260000e-21 111.0
9 TraesCS5D01G073200 chr5A 98.214 56 1 0 2765 2820 51463862 51463807 6.430000e-17 99.0
10 TraesCS5D01G073200 chr4B 91.429 420 34 2 2151 2569 616303135 616302717 2.440000e-160 575.0
11 TraesCS5D01G073200 chr4B 98.276 58 1 0 2765 2822 20752392 20752449 4.970000e-18 102.0
12 TraesCS5D01G073200 chr3B 91.807 415 28 5 2157 2569 561043469 561043059 8.770000e-160 573.0
13 TraesCS5D01G073200 chr3B 90.215 419 37 2 2152 2569 246171457 246171872 6.880000e-151 544.0
14 TraesCS5D01G073200 chr3B 88.889 207 23 0 222 428 191252398 191252604 3.610000e-64 255.0
15 TraesCS5D01G073200 chr3B 97.468 79 2 0 771 849 273555002 273554924 4.900000e-28 135.0
16 TraesCS5D01G073200 chr6D 90.974 421 35 3 2152 2569 115650822 115650402 5.280000e-157 564.0
17 TraesCS5D01G073200 chr6D 98.276 58 1 0 2765 2822 350137300 350137357 4.970000e-18 102.0
18 TraesCS5D01G073200 chr3D 90.499 421 38 2 2151 2569 68468443 68468023 3.180000e-154 555.0
19 TraesCS5D01G073200 chr3D 91.748 206 17 0 2569 2774 187477110 187477315 1.280000e-73 287.0
20 TraesCS5D01G073200 chr3D 90.404 198 19 0 231 428 135129847 135130044 7.750000e-66 261.0
21 TraesCS5D01G073200 chr3D 90.210 143 14 0 230 372 135142987 135143129 1.330000e-43 187.0
22 TraesCS5D01G073200 chr3D 96.552 58 2 0 2765 2822 68468030 68467973 2.310000e-16 97.1
23 TraesCS5D01G073200 chr1B 90.843 415 35 3 2156 2569 401621290 401621702 1.140000e-153 553.0
24 TraesCS5D01G073200 chr1B 96.552 58 2 0 2765 2822 623198105 623198048 2.310000e-16 97.1
25 TraesCS5D01G073200 chr1D 90.647 417 31 6 2156 2569 298570893 298571304 5.310000e-152 547.0
26 TraesCS5D01G073200 chr1D 98.276 58 1 0 2765 2822 298571297 298571354 4.970000e-18 102.0
27 TraesCS5D01G073200 chr1D 96.552 58 2 0 2765 2822 233099814 233099757 2.310000e-16 97.1
28 TraesCS5D01G073200 chr2D 96.172 209 8 0 2564 2772 218115806 218116014 2.690000e-90 342.0
29 TraesCS5D01G073200 chr2D 88.511 235 23 3 342 575 437713879 437713648 5.950000e-72 281.0
30 TraesCS5D01G073200 chr2D 100.000 60 0 0 790 849 437713613 437713554 8.260000e-21 111.0
31 TraesCS5D01G073200 chr2D 98.276 58 1 0 2765 2822 188844483 188844426 4.970000e-18 102.0
32 TraesCS5D01G073200 chr2D 89.286 84 4 1 2 80 437713982 437713899 1.790000e-17 100.0
33 TraesCS5D01G073200 chr1A 93.846 195 12 0 2570 2764 169949258 169949452 7.640000e-76 294.0
34 TraesCS5D01G073200 chr1A 100.000 60 0 0 790 849 465688302 465688243 8.260000e-21 111.0
35 TraesCS5D01G073200 chr3A 93.814 194 12 0 2573 2766 338083062 338082869 2.750000e-75 292.0
36 TraesCS5D01G073200 chr3A 92.195 205 16 0 2561 2765 480256505 480256709 9.890000e-75 291.0
37 TraesCS5D01G073200 chr3A 84.038 213 23 2 222 428 150065984 150066191 7.980000e-46 195.0
38 TraesCS5D01G073200 chr3A 88.095 84 5 1 2 80 1585974 1585891 8.320000e-16 95.3
39 TraesCS5D01G073200 chr2A 91.469 211 16 2 2563 2772 158107806 158108015 3.560000e-74 289.0
40 TraesCS5D01G073200 chr2A 98.276 58 1 0 790 847 454875031 454874974 4.970000e-18 102.0
41 TraesCS5D01G073200 chr2A 89.157 83 4 1 2 79 330489190 330489108 6.430000e-17 99.0
42 TraesCS5D01G073200 chr7B 97.468 79 2 0 771 849 441433814 441433892 4.900000e-28 135.0
43 TraesCS5D01G073200 chr6A 98.333 60 1 0 790 849 209657736 209657795 3.840000e-19 106.0
44 TraesCS5D01G073200 chr6A 98.333 60 1 0 790 849 428843996 428843937 3.840000e-19 106.0
45 TraesCS5D01G073200 chr7A 96.667 60 2 0 790 849 149500898 149500957 1.790000e-17 100.0
46 TraesCS5D01G073200 chr7D 98.214 56 1 0 2767 2822 566447498 566447553 6.430000e-17 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G073200 chr5D 72546170 72548991 2821 True 5212 5212 100.000 1 2822 1 chr5D.!!$R1 2821
1 TraesCS5D01G073200 chr5B 81395824 81397951 2127 False 3389 3389 95.360 1 2143 1 chr5B.!!$F1 2142
2 TraesCS5D01G073200 chr5A 64981141 64983237 2096 True 3120 3120 93.562 1 2104 1 chr5A.!!$R3 2103

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
506 512 0.890683 CCAGTTGGGAGAAATGTGGC 59.109 55.0 0.0 0.0 40.01 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2388 2432 0.029989 GTTAGATCCCCACCCCCTCT 60.03 60.0 0.0 0.0 0.0 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
80 81 1.064952 ACTTGGAGCCGTTGTTTTTCG 59.935 47.619 0.00 0.00 0.00 3.46
81 82 1.064952 CTTGGAGCCGTTGTTTTTCGT 59.935 47.619 0.00 0.00 0.00 3.85
82 83 1.950828 TGGAGCCGTTGTTTTTCGTA 58.049 45.000 0.00 0.00 0.00 3.43
83 84 1.598601 TGGAGCCGTTGTTTTTCGTAC 59.401 47.619 0.00 0.00 0.00 3.67
84 85 1.869132 GGAGCCGTTGTTTTTCGTACT 59.131 47.619 0.00 0.00 0.00 2.73
210 214 4.016838 GCACCCAAATGCTGGCTA 57.983 55.556 0.00 0.00 44.90 3.93
225 229 6.885952 TGCTGGCTAATAACAACAGTTTTA 57.114 33.333 0.00 0.00 0.00 1.52
292 296 2.414824 GGAATTTGTGCGCGTTTATCCA 60.415 45.455 8.43 0.00 0.00 3.41
330 334 5.424573 AGAATAGTAGGTGGGTGTTAAGTCC 59.575 44.000 0.00 0.00 0.00 3.85
374 378 4.464008 TCTGAACTTGTTGAAAGCAGGAT 58.536 39.130 0.00 0.00 0.00 3.24
377 381 6.545666 TCTGAACTTGTTGAAAGCAGGATTTA 59.454 34.615 0.00 0.00 0.00 1.40
480 486 1.092921 TGTCAGTCACACAAACCGCC 61.093 55.000 0.00 0.00 0.00 6.13
481 487 1.525077 TCAGTCACACAAACCGCCC 60.525 57.895 0.00 0.00 0.00 6.13
482 488 1.821759 CAGTCACACAAACCGCCCA 60.822 57.895 0.00 0.00 0.00 5.36
506 512 0.890683 CCAGTTGGGAGAAATGTGGC 59.109 55.000 0.00 0.00 40.01 5.01
704 718 2.706190 ACGCAGAGGCTAGGGATATTTT 59.294 45.455 9.91 0.00 38.10 1.82
861 876 5.566826 CGACAACCTTCATCTCCAAGACTTA 60.567 44.000 0.00 0.00 0.00 2.24
916 952 4.283978 AGGATCTCCTCTATCAACATGCAG 59.716 45.833 0.00 0.00 44.77 4.41
1098 1134 2.032681 GACGGCTGCAAGGAGGTT 59.967 61.111 0.50 0.00 0.00 3.50
1946 1989 3.036084 CGGTGTCCACGTCAGTGC 61.036 66.667 0.00 0.00 46.62 4.40
1957 2000 0.729116 CGTCAGTGCATCAATGTCCC 59.271 55.000 0.00 0.00 31.07 4.46
1981 2024 1.976728 CGTGTCAGTGTAGCGTAGTTG 59.023 52.381 0.00 0.00 0.00 3.16
2042 2086 4.278170 TGAAAAATCCTCAATCGTGTTGCT 59.722 37.500 0.00 0.00 0.00 3.91
2054 2098 0.598065 GTGTTGCTGTGATTGTCCCC 59.402 55.000 0.00 0.00 0.00 4.81
2104 2148 3.319198 TGAGGCCGAGGGTCCAAC 61.319 66.667 0.00 0.00 0.00 3.77
2105 2149 3.003763 GAGGCCGAGGGTCCAACT 61.004 66.667 0.00 0.00 0.00 3.16
2106 2150 3.003763 AGGCCGAGGGTCCAACTC 61.004 66.667 0.00 0.00 0.00 3.01
2117 2161 1.354368 GGTCCAACTCCAATCTTCCCA 59.646 52.381 0.00 0.00 0.00 4.37
2118 2162 2.024941 GGTCCAACTCCAATCTTCCCAT 60.025 50.000 0.00 0.00 0.00 4.00
2124 2168 1.893808 CCAATCTTCCCATCCGCCG 60.894 63.158 0.00 0.00 0.00 6.46
2127 2171 2.270874 AATCTTCCCATCCGCCGCTT 62.271 55.000 0.00 0.00 0.00 4.68
2128 2172 2.270874 ATCTTCCCATCCGCCGCTTT 62.271 55.000 0.00 0.00 0.00 3.51
2143 2187 0.392461 GCTTTGGCCACGGATGAGTA 60.392 55.000 3.88 0.00 0.00 2.59
2144 2188 1.747206 GCTTTGGCCACGGATGAGTAT 60.747 52.381 3.88 0.00 0.00 2.12
2145 2189 1.942657 CTTTGGCCACGGATGAGTATG 59.057 52.381 3.88 0.00 0.00 2.39
2146 2190 0.908910 TTGGCCACGGATGAGTATGT 59.091 50.000 3.88 0.00 0.00 2.29
2147 2191 0.908910 TGGCCACGGATGAGTATGTT 59.091 50.000 0.00 0.00 0.00 2.71
2148 2192 1.280710 TGGCCACGGATGAGTATGTTT 59.719 47.619 0.00 0.00 0.00 2.83
2149 2193 1.670811 GGCCACGGATGAGTATGTTTG 59.329 52.381 0.00 0.00 0.00 2.93
2150 2194 1.064060 GCCACGGATGAGTATGTTTGC 59.936 52.381 0.00 0.00 0.00 3.68
2151 2195 1.670811 CCACGGATGAGTATGTTTGCC 59.329 52.381 0.00 0.00 0.00 4.52
2152 2196 1.670811 CACGGATGAGTATGTTTGCCC 59.329 52.381 0.00 0.00 0.00 5.36
2153 2197 1.308998 CGGATGAGTATGTTTGCCCC 58.691 55.000 0.00 0.00 0.00 5.80
2154 2198 1.408127 CGGATGAGTATGTTTGCCCCA 60.408 52.381 0.00 0.00 0.00 4.96
2155 2199 2.024414 GGATGAGTATGTTTGCCCCAC 58.976 52.381 0.00 0.00 0.00 4.61
2156 2200 2.620367 GGATGAGTATGTTTGCCCCACA 60.620 50.000 0.00 0.00 0.00 4.17
2157 2201 2.666272 TGAGTATGTTTGCCCCACAA 57.334 45.000 0.00 0.00 36.13 3.33
2158 2202 2.950781 TGAGTATGTTTGCCCCACAAA 58.049 42.857 0.00 0.00 46.01 2.83
2165 2209 2.926778 TTTGCCCCACAAAATCTTGG 57.073 45.000 0.00 0.00 45.22 3.61
2166 2210 0.396060 TTGCCCCACAAAATCTTGGC 59.604 50.000 0.00 0.00 36.82 4.52
2167 2211 1.296392 GCCCCACAAAATCTTGGCC 59.704 57.895 0.00 0.00 36.82 5.36
2168 2212 1.982430 CCCCACAAAATCTTGGCCC 59.018 57.895 0.00 0.00 36.82 5.80
2169 2213 1.591183 CCCACAAAATCTTGGCCCG 59.409 57.895 0.00 0.00 36.82 6.13
2170 2214 1.184970 CCCACAAAATCTTGGCCCGT 61.185 55.000 0.00 0.00 36.82 5.28
2171 2215 1.540267 CCACAAAATCTTGGCCCGTA 58.460 50.000 0.00 0.00 36.82 4.02
2172 2216 1.889829 CCACAAAATCTTGGCCCGTAA 59.110 47.619 0.00 0.00 36.82 3.18
2173 2217 2.297597 CCACAAAATCTTGGCCCGTAAA 59.702 45.455 0.00 0.00 36.82 2.01
2174 2218 3.243907 CCACAAAATCTTGGCCCGTAAAA 60.244 43.478 0.00 0.00 36.82 1.52
2175 2219 3.738791 CACAAAATCTTGGCCCGTAAAAC 59.261 43.478 0.00 0.00 36.82 2.43
2176 2220 3.385111 ACAAAATCTTGGCCCGTAAAACA 59.615 39.130 0.00 0.00 36.82 2.83
2177 2221 3.653539 AAATCTTGGCCCGTAAAACAC 57.346 42.857 0.00 0.00 0.00 3.32
2178 2222 7.944796 ACAAAATCTTGGCCCGTAAAACACG 62.945 44.000 0.00 0.00 42.57 4.49
2194 2238 3.644805 ACACGTTTACAGTTTGACACG 57.355 42.857 0.00 0.00 0.00 4.49
2195 2239 2.349275 ACACGTTTACAGTTTGACACGG 59.651 45.455 0.00 0.00 0.00 4.94
2196 2240 2.604011 CACGTTTACAGTTTGACACGGA 59.396 45.455 0.00 0.00 0.00 4.69
2197 2241 3.062369 CACGTTTACAGTTTGACACGGAA 59.938 43.478 0.00 0.00 0.00 4.30
2198 2242 3.062504 ACGTTTACAGTTTGACACGGAAC 59.937 43.478 0.00 0.00 0.00 3.62
2199 2243 3.307782 CGTTTACAGTTTGACACGGAACT 59.692 43.478 0.00 0.00 36.58 3.01
2200 2244 4.549489 CGTTTACAGTTTGACACGGAACTC 60.549 45.833 0.00 0.00 34.04 3.01
2201 2245 1.567504 ACAGTTTGACACGGAACTCG 58.432 50.000 0.00 0.00 45.88 4.18
2215 2259 3.632700 CTCGTTTGCGGGTCGAAA 58.367 55.556 0.00 0.00 38.89 3.46
2216 2260 1.935925 CTCGTTTGCGGGTCGAAAA 59.064 52.632 0.00 0.00 38.89 2.29
2218 2262 4.199130 GTTTGCGGGTCGAAAACG 57.801 55.556 7.95 0.00 43.85 3.60
2219 2263 1.352753 GTTTGCGGGTCGAAAACGT 59.647 52.632 7.95 0.00 43.85 3.99
2220 2264 0.926628 GTTTGCGGGTCGAAAACGTG 60.927 55.000 7.95 0.00 43.85 4.49
2221 2265 2.649843 TTTGCGGGTCGAAAACGTGC 62.650 55.000 0.00 0.00 28.61 5.34
2222 2266 4.712873 GCGGGTCGAAAACGTGCG 62.713 66.667 0.00 0.00 0.00 5.34
2223 2267 3.332409 CGGGTCGAAAACGTGCGT 61.332 61.111 0.00 0.00 0.00 5.24
2224 2268 2.015627 CGGGTCGAAAACGTGCGTA 61.016 57.895 0.00 0.00 0.00 4.42
2225 2269 1.777199 GGGTCGAAAACGTGCGTAG 59.223 57.895 0.00 0.00 0.00 3.51
2239 2283 3.204505 CGTAGCCGAACAGAAACCA 57.795 52.632 0.00 0.00 35.63 3.67
2240 2284 1.722011 CGTAGCCGAACAGAAACCAT 58.278 50.000 0.00 0.00 35.63 3.55
2241 2285 2.883574 CGTAGCCGAACAGAAACCATA 58.116 47.619 0.00 0.00 35.63 2.74
2242 2286 3.454375 CGTAGCCGAACAGAAACCATAT 58.546 45.455 0.00 0.00 35.63 1.78
2243 2287 4.613944 CGTAGCCGAACAGAAACCATATA 58.386 43.478 0.00 0.00 35.63 0.86
2244 2288 5.227908 CGTAGCCGAACAGAAACCATATAT 58.772 41.667 0.00 0.00 35.63 0.86
2245 2289 6.384224 CGTAGCCGAACAGAAACCATATATA 58.616 40.000 0.00 0.00 35.63 0.86
2246 2290 6.527023 CGTAGCCGAACAGAAACCATATATAG 59.473 42.308 0.00 0.00 35.63 1.31
2247 2291 6.665992 AGCCGAACAGAAACCATATATAGA 57.334 37.500 0.00 0.00 0.00 1.98
2248 2292 7.062749 AGCCGAACAGAAACCATATATAGAA 57.937 36.000 0.00 0.00 0.00 2.10
2249 2293 6.929606 AGCCGAACAGAAACCATATATAGAAC 59.070 38.462 0.00 0.00 0.00 3.01
2250 2294 6.704493 GCCGAACAGAAACCATATATAGAACA 59.296 38.462 0.00 0.00 0.00 3.18
2251 2295 7.387948 GCCGAACAGAAACCATATATAGAACAT 59.612 37.037 0.00 0.00 0.00 2.71
2252 2296 8.926710 CCGAACAGAAACCATATATAGAACATC 58.073 37.037 0.00 0.00 0.00 3.06
2253 2297 9.476202 CGAACAGAAACCATATATAGAACATCA 57.524 33.333 0.00 0.00 0.00 3.07
2291 2335 3.363341 TTTCACGGAGAAATTGCAACC 57.637 42.857 0.00 0.00 41.17 3.77
2295 2339 2.806288 CGGAGAAATTGCAACCGTAG 57.194 50.000 15.25 0.00 38.97 3.51
2296 2340 2.073816 CGGAGAAATTGCAACCGTAGT 58.926 47.619 15.25 0.00 38.97 2.73
2297 2341 3.255725 CGGAGAAATTGCAACCGTAGTA 58.744 45.455 15.25 0.00 38.97 1.82
2298 2342 3.680937 CGGAGAAATTGCAACCGTAGTAA 59.319 43.478 15.25 0.00 38.97 2.24
2299 2343 4.331717 CGGAGAAATTGCAACCGTAGTAAT 59.668 41.667 15.25 0.00 38.97 1.89
2300 2344 5.163794 CGGAGAAATTGCAACCGTAGTAATT 60.164 40.000 15.25 0.00 38.97 1.40
2301 2345 6.255950 GGAGAAATTGCAACCGTAGTAATTC 58.744 40.000 0.00 0.00 31.50 2.17
2302 2346 6.128117 GGAGAAATTGCAACCGTAGTAATTCA 60.128 38.462 0.00 0.00 31.50 2.57
2303 2347 7.391148 AGAAATTGCAACCGTAGTAATTCAT 57.609 32.000 0.00 0.00 31.50 2.57
2304 2348 7.472543 AGAAATTGCAACCGTAGTAATTCATC 58.527 34.615 0.00 0.00 31.50 2.92
2305 2349 6.751514 AATTGCAACCGTAGTAATTCATCA 57.248 33.333 0.00 0.00 27.20 3.07
2306 2350 5.539582 TTGCAACCGTAGTAATTCATCAC 57.460 39.130 0.00 0.00 0.00 3.06
2307 2351 4.570930 TGCAACCGTAGTAATTCATCACA 58.429 39.130 0.00 0.00 0.00 3.58
2308 2352 5.182487 TGCAACCGTAGTAATTCATCACAT 58.818 37.500 0.00 0.00 0.00 3.21
2309 2353 6.342111 TGCAACCGTAGTAATTCATCACATA 58.658 36.000 0.00 0.00 0.00 2.29
2310 2354 6.256975 TGCAACCGTAGTAATTCATCACATAC 59.743 38.462 0.00 0.00 0.00 2.39
2311 2355 6.479001 GCAACCGTAGTAATTCATCACATACT 59.521 38.462 0.00 0.00 33.45 2.12
2312 2356 7.650504 GCAACCGTAGTAATTCATCACATACTA 59.349 37.037 0.00 0.00 31.46 1.82
2313 2357 8.965172 CAACCGTAGTAATTCATCACATACTAC 58.035 37.037 10.45 10.45 43.49 2.73
2314 2358 8.229253 ACCGTAGTAATTCATCACATACTACA 57.771 34.615 17.28 0.00 45.55 2.74
2315 2359 8.857098 ACCGTAGTAATTCATCACATACTACAT 58.143 33.333 17.28 6.42 45.55 2.29
2373 2417 8.954950 ACACTAGTTCATACTACATACTACGT 57.045 34.615 0.00 0.00 35.78 3.57
2374 2418 9.388506 ACACTAGTTCATACTACATACTACGTT 57.611 33.333 0.00 0.00 35.78 3.99
2375 2419 9.861138 CACTAGTTCATACTACATACTACGTTC 57.139 37.037 0.00 0.00 35.78 3.95
2376 2420 9.605275 ACTAGTTCATACTACATACTACGTTCA 57.395 33.333 0.00 0.00 35.78 3.18
2377 2421 9.861138 CTAGTTCATACTACATACTACGTTCAC 57.139 37.037 0.00 0.00 35.78 3.18
2378 2422 8.503458 AGTTCATACTACATACTACGTTCACT 57.497 34.615 0.00 0.00 31.21 3.41
2379 2423 9.605275 AGTTCATACTACATACTACGTTCACTA 57.395 33.333 0.00 0.00 31.21 2.74
2380 2424 9.643652 GTTCATACTACATACTACGTTCACTAC 57.356 37.037 0.00 0.00 0.00 2.73
2381 2425 9.605275 TTCATACTACATACTACGTTCACTACT 57.395 33.333 0.00 0.00 0.00 2.57
2386 2430 9.522804 ACTACATACTACGTTCACTACTAGTAC 57.477 37.037 0.00 0.00 31.66 2.73
2387 2431 9.743057 CTACATACTACGTTCACTACTAGTACT 57.257 37.037 0.00 0.00 31.66 2.73
2389 2433 9.743057 ACATACTACGTTCACTACTAGTACTAG 57.257 37.037 25.30 25.30 39.04 2.57
2390 2434 9.958234 CATACTACGTTCACTACTAGTACTAGA 57.042 37.037 31.93 16.56 36.97 2.43
2392 2436 7.488322 ACTACGTTCACTACTAGTACTAGAGG 58.512 42.308 31.93 24.03 36.97 3.69
2393 2437 5.669477 ACGTTCACTACTAGTACTAGAGGG 58.331 45.833 31.93 24.14 36.97 4.30
2394 2438 5.055812 CGTTCACTACTAGTACTAGAGGGG 58.944 50.000 31.93 23.46 36.97 4.79
2395 2439 5.375773 GTTCACTACTAGTACTAGAGGGGG 58.624 50.000 31.93 21.41 36.97 5.40
2396 2440 4.639731 TCACTACTAGTACTAGAGGGGGT 58.360 47.826 31.93 19.16 36.97 4.95
2397 2441 4.411540 TCACTACTAGTACTAGAGGGGGTG 59.588 50.000 31.93 26.20 36.97 4.61
2398 2442 3.721050 ACTACTAGTACTAGAGGGGGTGG 59.279 52.174 31.93 15.89 36.97 4.61
2399 2443 1.858246 ACTAGTACTAGAGGGGGTGGG 59.142 57.143 31.93 6.88 36.97 4.61
2400 2444 1.147399 CTAGTACTAGAGGGGGTGGGG 59.853 61.905 23.20 0.00 35.21 4.96
2401 2445 0.556888 AGTACTAGAGGGGGTGGGGA 60.557 60.000 0.00 0.00 0.00 4.81
2402 2446 0.566679 GTACTAGAGGGGGTGGGGAT 59.433 60.000 0.00 0.00 0.00 3.85
2403 2447 0.865362 TACTAGAGGGGGTGGGGATC 59.135 60.000 0.00 0.00 0.00 3.36
2404 2448 0.936863 ACTAGAGGGGGTGGGGATCT 60.937 60.000 0.00 0.00 0.00 2.75
2405 2449 1.167943 CTAGAGGGGGTGGGGATCTA 58.832 60.000 0.00 0.00 0.00 1.98
2406 2450 1.508185 CTAGAGGGGGTGGGGATCTAA 59.492 57.143 0.00 0.00 0.00 2.10
2407 2451 0.029989 AGAGGGGGTGGGGATCTAAC 60.030 60.000 0.00 0.00 0.00 2.34
2408 2452 1.384082 AGGGGGTGGGGATCTAACG 60.384 63.158 0.00 0.00 0.00 3.18
2409 2453 2.449450 GGGGGTGGGGATCTAACGG 61.449 68.421 0.00 0.00 0.00 4.44
2410 2454 2.509422 GGGTGGGGATCTAACGGC 59.491 66.667 0.00 0.00 0.00 5.68
2411 2455 2.108362 GGTGGGGATCTAACGGCG 59.892 66.667 4.80 4.80 0.00 6.46
2412 2456 2.108362 GTGGGGATCTAACGGCGG 59.892 66.667 13.24 0.00 0.00 6.13
2413 2457 3.857038 TGGGGATCTAACGGCGGC 61.857 66.667 13.24 0.00 0.00 6.53
2414 2458 4.963428 GGGGATCTAACGGCGGCG 62.963 72.222 31.06 31.06 0.00 6.46
2415 2459 3.908081 GGGATCTAACGGCGGCGA 61.908 66.667 38.93 16.52 0.00 5.54
2416 2460 2.354773 GGATCTAACGGCGGCGAG 60.355 66.667 38.93 25.22 0.00 5.03
2442 2486 4.429212 CATGGACGACGCGGTGGA 62.429 66.667 12.47 0.00 0.00 4.02
2443 2487 4.129737 ATGGACGACGCGGTGGAG 62.130 66.667 12.47 0.00 0.00 3.86
2446 2490 4.477975 GACGACGCGGTGGAGGAG 62.478 72.222 12.47 0.00 0.00 3.69
2449 2493 4.500116 GACGCGGTGGAGGAGCTC 62.500 72.222 12.47 4.71 0.00 4.09
2451 2495 4.069232 CGCGGTGGAGGAGCTCAA 62.069 66.667 17.19 0.00 31.08 3.02
2452 2496 2.586792 GCGGTGGAGGAGCTCAAT 59.413 61.111 17.19 2.72 31.08 2.57
2453 2497 1.522580 GCGGTGGAGGAGCTCAATC 60.523 63.158 17.19 12.62 31.08 2.67
2454 2498 1.144936 CGGTGGAGGAGCTCAATCC 59.855 63.158 23.77 23.77 39.89 3.01
2462 2506 2.217429 GGAGCTCAATCCTCTTCGTC 57.783 55.000 17.19 0.00 36.35 4.20
2463 2507 1.535015 GGAGCTCAATCCTCTTCGTCG 60.535 57.143 17.19 0.00 36.35 5.12
2464 2508 0.179124 AGCTCAATCCTCTTCGTCGC 60.179 55.000 0.00 0.00 0.00 5.19
2465 2509 0.458543 GCTCAATCCTCTTCGTCGCA 60.459 55.000 0.00 0.00 0.00 5.10
2466 2510 1.554392 CTCAATCCTCTTCGTCGCAG 58.446 55.000 0.00 0.00 0.00 5.18
2467 2511 0.458543 TCAATCCTCTTCGTCGCAGC 60.459 55.000 0.00 0.00 0.00 5.25
2468 2512 0.459237 CAATCCTCTTCGTCGCAGCT 60.459 55.000 0.00 0.00 0.00 4.24
2469 2513 0.459237 AATCCTCTTCGTCGCAGCTG 60.459 55.000 10.11 10.11 0.00 4.24
2470 2514 2.897641 ATCCTCTTCGTCGCAGCTGC 62.898 60.000 29.12 29.12 37.78 5.25
2471 2515 3.184683 CTCTTCGTCGCAGCTGCC 61.185 66.667 32.07 18.39 37.91 4.85
2480 2524 4.521062 GCAGCTGCCGAGGTCGAT 62.521 66.667 28.76 0.00 43.02 3.59
2481 2525 2.584418 CAGCTGCCGAGGTCGATG 60.584 66.667 0.00 0.00 43.02 3.84
2482 2526 3.071206 AGCTGCCGAGGTCGATGT 61.071 61.111 0.00 0.00 43.02 3.06
2483 2527 1.753078 AGCTGCCGAGGTCGATGTA 60.753 57.895 0.00 0.00 43.02 2.29
2484 2528 1.589196 GCTGCCGAGGTCGATGTAC 60.589 63.158 0.00 0.00 43.02 2.90
2485 2529 2.005960 GCTGCCGAGGTCGATGTACT 62.006 60.000 0.00 0.00 43.02 2.73
2486 2530 0.456221 CTGCCGAGGTCGATGTACTT 59.544 55.000 0.00 0.00 43.02 2.24
2487 2531 0.454600 TGCCGAGGTCGATGTACTTC 59.545 55.000 0.00 0.00 43.02 3.01
2488 2532 0.591741 GCCGAGGTCGATGTACTTCG 60.592 60.000 21.55 21.55 45.43 3.79
2489 2533 0.591741 CCGAGGTCGATGTACTTCGC 60.592 60.000 22.46 17.43 44.76 4.70
2490 2534 0.591741 CGAGGTCGATGTACTTCGCC 60.592 60.000 22.46 23.42 41.17 5.54
2491 2535 0.739561 GAGGTCGATGTACTTCGCCT 59.260 55.000 29.45 29.45 43.46 5.52
2492 2536 1.134560 GAGGTCGATGTACTTCGCCTT 59.865 52.381 29.54 17.90 42.00 4.35
2493 2537 1.134560 AGGTCGATGTACTTCGCCTTC 59.865 52.381 26.47 16.91 40.36 3.46
2494 2538 1.134560 GGTCGATGTACTTCGCCTTCT 59.865 52.381 22.46 0.00 38.97 2.85
2495 2539 2.186076 GTCGATGTACTTCGCCTTCTG 58.814 52.381 22.46 0.00 38.97 3.02
2496 2540 0.924090 CGATGTACTTCGCCTTCTGC 59.076 55.000 16.91 0.00 31.60 4.26
2497 2541 1.469940 CGATGTACTTCGCCTTCTGCT 60.470 52.381 16.91 0.00 38.05 4.24
2498 2542 2.197577 GATGTACTTCGCCTTCTGCTC 58.802 52.381 0.00 0.00 38.05 4.26
2499 2543 0.246635 TGTACTTCGCCTTCTGCTCC 59.753 55.000 0.00 0.00 38.05 4.70
2500 2544 0.533032 GTACTTCGCCTTCTGCTCCT 59.467 55.000 0.00 0.00 38.05 3.69
2501 2545 0.818296 TACTTCGCCTTCTGCTCCTC 59.182 55.000 0.00 0.00 38.05 3.71
2502 2546 1.518133 CTTCGCCTTCTGCTCCTCG 60.518 63.158 0.00 0.00 38.05 4.63
2503 2547 3.649277 TTCGCCTTCTGCTCCTCGC 62.649 63.158 0.00 0.00 38.05 5.03
2528 2572 4.052229 CCGCCACTCGTCGTCCTT 62.052 66.667 0.00 0.00 36.19 3.36
2529 2573 2.504244 CGCCACTCGTCGTCCTTC 60.504 66.667 0.00 0.00 0.00 3.46
2530 2574 2.963371 GCCACTCGTCGTCCTTCT 59.037 61.111 0.00 0.00 0.00 2.85
2531 2575 1.153997 GCCACTCGTCGTCCTTCTC 60.154 63.158 0.00 0.00 0.00 2.87
2532 2576 1.507174 CCACTCGTCGTCCTTCTCC 59.493 63.158 0.00 0.00 0.00 3.71
2533 2577 0.961358 CCACTCGTCGTCCTTCTCCT 60.961 60.000 0.00 0.00 0.00 3.69
2534 2578 0.882474 CACTCGTCGTCCTTCTCCTT 59.118 55.000 0.00 0.00 0.00 3.36
2535 2579 0.882474 ACTCGTCGTCCTTCTCCTTG 59.118 55.000 0.00 0.00 0.00 3.61
2536 2580 0.171455 CTCGTCGTCCTTCTCCTTGG 59.829 60.000 0.00 0.00 0.00 3.61
2537 2581 1.446272 CGTCGTCCTTCTCCTTGGC 60.446 63.158 0.00 0.00 0.00 4.52
2538 2582 1.446272 GTCGTCCTTCTCCTTGGCG 60.446 63.158 0.00 0.00 0.00 5.69
2539 2583 2.125512 CGTCCTTCTCCTTGGCGG 60.126 66.667 0.00 0.00 0.00 6.13
2540 2584 2.436824 GTCCTTCTCCTTGGCGGC 60.437 66.667 0.00 0.00 0.00 6.53
2541 2585 2.927856 TCCTTCTCCTTGGCGGCA 60.928 61.111 7.97 7.97 0.00 5.69
2542 2586 2.034066 CCTTCTCCTTGGCGGCAA 59.966 61.111 24.02 24.02 0.00 4.52
2543 2587 2.042831 CCTTCTCCTTGGCGGCAAG 61.043 63.158 37.09 37.09 0.00 4.01
2548 2592 3.737172 CCTTGGCGGCAAGGTTCG 61.737 66.667 45.77 29.37 44.99 3.95
2571 2615 4.666253 ACCGCCTGCTGCAACCAT 62.666 61.111 3.02 0.00 41.33 3.55
2572 2616 3.376078 CCGCCTGCTGCAACCATT 61.376 61.111 3.02 0.00 41.33 3.16
2573 2617 2.126228 CGCCTGCTGCAACCATTG 60.126 61.111 3.02 0.00 41.33 2.82
2574 2618 2.922950 CGCCTGCTGCAACCATTGT 61.923 57.895 3.02 0.00 41.33 2.71
2575 2619 1.368579 GCCTGCTGCAACCATTGTT 59.631 52.632 3.02 0.00 40.77 2.83
2576 2620 0.668401 GCCTGCTGCAACCATTGTTC 60.668 55.000 3.02 0.00 40.77 3.18
2577 2621 0.675083 CCTGCTGCAACCATTGTTCA 59.325 50.000 3.02 0.00 30.42 3.18
2578 2622 1.068895 CCTGCTGCAACCATTGTTCAA 59.931 47.619 3.02 0.00 30.42 2.69
2579 2623 2.400399 CTGCTGCAACCATTGTTCAAG 58.600 47.619 3.02 0.00 30.42 3.02
2580 2624 2.030371 TGCTGCAACCATTGTTCAAGA 58.970 42.857 0.00 0.00 30.42 3.02
2581 2625 2.629137 TGCTGCAACCATTGTTCAAGAT 59.371 40.909 0.00 0.00 30.42 2.40
2582 2626 3.825585 TGCTGCAACCATTGTTCAAGATA 59.174 39.130 0.00 0.00 30.42 1.98
2583 2627 4.463539 TGCTGCAACCATTGTTCAAGATAT 59.536 37.500 0.00 0.00 30.42 1.63
2584 2628 5.039333 GCTGCAACCATTGTTCAAGATATC 58.961 41.667 0.00 0.00 30.42 1.63
2585 2629 5.163581 GCTGCAACCATTGTTCAAGATATCT 60.164 40.000 0.00 0.00 30.42 1.98
2586 2630 6.626623 GCTGCAACCATTGTTCAAGATATCTT 60.627 38.462 12.37 12.37 31.85 2.40
2587 2631 6.855836 TGCAACCATTGTTCAAGATATCTTC 58.144 36.000 15.24 5.43 30.12 2.87
2588 2632 6.127647 TGCAACCATTGTTCAAGATATCTTCC 60.128 38.462 15.24 7.10 30.12 3.46
2589 2633 6.489675 CAACCATTGTTCAAGATATCTTCCG 58.510 40.000 15.24 5.78 30.12 4.30
2590 2634 5.989477 ACCATTGTTCAAGATATCTTCCGA 58.011 37.500 15.24 8.09 33.11 4.55
2591 2635 6.595682 ACCATTGTTCAAGATATCTTCCGAT 58.404 36.000 15.24 8.64 33.11 4.18
2592 2636 7.735917 ACCATTGTTCAAGATATCTTCCGATA 58.264 34.615 15.24 2.27 36.61 2.92
2593 2637 8.378565 ACCATTGTTCAAGATATCTTCCGATAT 58.621 33.333 15.24 4.41 43.73 1.63
2594 2638 9.224267 CCATTGTTCAAGATATCTTCCGATATT 57.776 33.333 15.24 0.00 41.70 1.28
2596 2640 8.833231 TTGTTCAAGATATCTTCCGATATTCC 57.167 34.615 15.24 0.00 41.70 3.01
2597 2641 7.090808 TGTTCAAGATATCTTCCGATATTCCG 58.909 38.462 15.24 0.82 41.70 4.30
2598 2642 7.039993 TGTTCAAGATATCTTCCGATATTCCGA 60.040 37.037 15.24 3.18 41.70 4.55
2599 2643 7.646548 TCAAGATATCTTCCGATATTCCGAT 57.353 36.000 15.24 0.00 41.70 4.18
2600 2644 8.747538 TCAAGATATCTTCCGATATTCCGATA 57.252 34.615 15.24 0.00 41.70 2.92
2601 2645 9.185680 TCAAGATATCTTCCGATATTCCGATAA 57.814 33.333 15.24 0.00 41.70 1.75
2602 2646 9.803315 CAAGATATCTTCCGATATTCCGATAAA 57.197 33.333 15.24 0.00 41.70 1.40
2605 2649 9.967346 GATATCTTCCGATATTCCGATAAATCA 57.033 33.333 0.00 0.00 41.70 2.57
2606 2650 9.973450 ATATCTTCCGATATTCCGATAAATCAG 57.027 33.333 0.00 0.00 39.27 2.90
2607 2651 6.100004 TCTTCCGATATTCCGATAAATCAGC 58.900 40.000 0.00 0.00 0.00 4.26
2608 2652 4.755411 TCCGATATTCCGATAAATCAGCC 58.245 43.478 0.00 0.00 0.00 4.85
2609 2653 3.551890 CCGATATTCCGATAAATCAGCCG 59.448 47.826 0.00 0.00 0.00 5.52
2610 2654 4.421058 CGATATTCCGATAAATCAGCCGA 58.579 43.478 0.00 0.00 0.00 5.54
2611 2655 5.043903 CGATATTCCGATAAATCAGCCGAT 58.956 41.667 0.00 0.00 0.00 4.18
2612 2656 5.520288 CGATATTCCGATAAATCAGCCGATT 59.480 40.000 0.00 0.00 43.94 3.34
2626 2670 7.121550 AATCAGCCGATTTATCGCTTATCGAT 61.122 38.462 2.16 2.16 44.48 3.59
2627 2671 9.040805 AATCAGCCGATTTATCGCTTATCGATG 62.041 40.741 8.54 1.99 46.27 3.84
2634 2678 2.776312 TCGCTTATCGATGTCTGACC 57.224 50.000 8.54 0.00 43.16 4.02
2635 2679 1.002792 TCGCTTATCGATGTCTGACCG 60.003 52.381 8.54 2.73 43.16 4.79
2636 2680 1.002792 CGCTTATCGATGTCTGACCGA 60.003 52.381 8.54 10.70 41.67 4.69
2637 2681 2.350868 CGCTTATCGATGTCTGACCGAT 60.351 50.000 20.26 20.26 44.10 4.18
2638 2682 3.120304 CGCTTATCGATGTCTGACCGATA 60.120 47.826 18.72 18.72 42.23 2.92
2639 2683 4.612939 CGCTTATCGATGTCTGACCGATAA 60.613 45.833 25.82 25.82 46.44 1.75
2642 2686 3.965292 TCGATGTCTGACCGATAAGAC 57.035 47.619 5.17 0.00 42.61 3.01
2653 2697 1.847818 CGATAAGACAAATCGGCCGA 58.152 50.000 33.12 33.12 41.91 5.54
2654 2698 2.404215 CGATAAGACAAATCGGCCGAT 58.596 47.619 34.60 34.60 41.91 4.18
2655 2699 3.571571 CGATAAGACAAATCGGCCGATA 58.428 45.455 39.08 23.01 41.91 2.92
2656 2700 3.985279 CGATAAGACAAATCGGCCGATAA 59.015 43.478 39.08 15.16 41.91 1.75
2657 2701 4.446385 CGATAAGACAAATCGGCCGATAAA 59.554 41.667 39.08 19.52 41.91 1.40
2658 2702 5.120208 CGATAAGACAAATCGGCCGATAAAT 59.880 40.000 39.08 26.45 41.91 1.40
2659 2703 4.813296 AAGACAAATCGGCCGATAAATC 57.187 40.909 39.08 31.51 33.97 2.17
2660 2704 3.804036 AGACAAATCGGCCGATAAATCA 58.196 40.909 39.08 12.55 33.97 2.57
2661 2705 3.809832 AGACAAATCGGCCGATAAATCAG 59.190 43.478 39.08 25.06 33.97 2.90
2662 2706 2.290641 ACAAATCGGCCGATAAATCAGC 59.709 45.455 39.08 0.00 33.97 4.26
2663 2707 1.523758 AATCGGCCGATAAATCAGCC 58.476 50.000 39.08 7.08 44.93 4.85
2665 2709 4.771127 GGCCGATAAATCAGCCGA 57.229 55.556 1.56 0.00 40.23 5.54
2666 2710 3.233355 GGCCGATAAATCAGCCGAT 57.767 52.632 1.56 0.00 40.23 4.18
2667 2711 2.380084 GGCCGATAAATCAGCCGATA 57.620 50.000 1.56 0.00 40.23 2.92
2668 2712 2.906354 GGCCGATAAATCAGCCGATAT 58.094 47.619 1.56 0.00 40.23 1.63
2669 2713 2.609459 GGCCGATAAATCAGCCGATATG 59.391 50.000 1.56 0.00 40.23 1.78
2670 2714 2.609459 GCCGATAAATCAGCCGATATGG 59.391 50.000 0.00 0.00 42.50 2.74
2693 2737 3.766151 GATAAATCGACCGATATGCCGA 58.234 45.455 5.27 0.00 33.97 5.54
2694 2738 2.743636 AAATCGACCGATATGCCGAT 57.256 45.000 5.27 0.00 42.66 4.18
2695 2739 3.861276 AAATCGACCGATATGCCGATA 57.139 42.857 5.27 0.00 40.35 2.92
2696 2740 3.861276 AATCGACCGATATGCCGATAA 57.139 42.857 5.27 0.00 40.35 1.75
2697 2741 3.861276 ATCGACCGATATGCCGATAAA 57.139 42.857 2.75 0.00 39.59 1.40
2698 2742 2.937591 TCGACCGATATGCCGATAAAC 58.062 47.619 0.00 0.00 0.00 2.01
2699 2743 2.293955 TCGACCGATATGCCGATAAACA 59.706 45.455 0.00 0.00 0.00 2.83
2700 2744 2.661675 CGACCGATATGCCGATAAACAG 59.338 50.000 0.00 0.00 0.00 3.16
2701 2745 2.993899 GACCGATATGCCGATAAACAGG 59.006 50.000 0.00 0.00 0.00 4.00
2710 2754 3.334272 CCGATAAACAGGCCGATTTTC 57.666 47.619 11.87 5.79 0.00 2.29
2711 2755 2.032924 CCGATAAACAGGCCGATTTTCC 59.967 50.000 11.87 4.86 0.00 3.13
2712 2756 2.032924 CGATAAACAGGCCGATTTTCCC 59.967 50.000 11.87 2.86 0.00 3.97
2713 2757 1.842052 TAAACAGGCCGATTTTCCCC 58.158 50.000 11.87 0.00 0.00 4.81
2714 2758 0.114364 AAACAGGCCGATTTTCCCCT 59.886 50.000 0.00 0.00 0.00 4.79
2715 2759 0.114364 AACAGGCCGATTTTCCCCTT 59.886 50.000 0.00 0.00 0.00 3.95
2716 2760 0.996583 ACAGGCCGATTTTCCCCTTA 59.003 50.000 0.00 0.00 0.00 2.69
2717 2761 1.569072 ACAGGCCGATTTTCCCCTTAT 59.431 47.619 0.00 0.00 0.00 1.73
2718 2762 2.230660 CAGGCCGATTTTCCCCTTATC 58.769 52.381 0.00 0.00 0.00 1.75
2719 2763 1.850345 AGGCCGATTTTCCCCTTATCA 59.150 47.619 0.00 0.00 0.00 2.15
2720 2764 2.447047 AGGCCGATTTTCCCCTTATCAT 59.553 45.455 0.00 0.00 0.00 2.45
2721 2765 2.558359 GGCCGATTTTCCCCTTATCATG 59.442 50.000 0.00 0.00 0.00 3.07
2722 2766 2.558359 GCCGATTTTCCCCTTATCATGG 59.442 50.000 0.00 0.00 0.00 3.66
2723 2767 3.157087 CCGATTTTCCCCTTATCATGGG 58.843 50.000 0.00 0.00 44.19 4.00
2724 2768 3.436470 CCGATTTTCCCCTTATCATGGGT 60.436 47.826 0.00 0.00 43.09 4.51
2725 2769 3.821033 CGATTTTCCCCTTATCATGGGTC 59.179 47.826 0.00 0.00 43.09 4.46
2726 2770 3.290948 TTTTCCCCTTATCATGGGTCG 57.709 47.619 0.00 0.00 43.09 4.79
2727 2771 2.184088 TTCCCCTTATCATGGGTCGA 57.816 50.000 0.00 0.00 43.09 4.20
2728 2772 1.420430 TCCCCTTATCATGGGTCGAC 58.580 55.000 7.13 7.13 43.09 4.20
2729 2773 0.396811 CCCCTTATCATGGGTCGACC 59.603 60.000 27.04 27.04 43.09 4.79
2730 2774 0.033504 CCCTTATCATGGGTCGACCG 59.966 60.000 27.68 14.74 44.64 4.79
2731 2775 0.033504 CCTTATCATGGGTCGACCGG 59.966 60.000 27.68 19.15 44.64 5.28
2732 2776 0.750850 CTTATCATGGGTCGACCGGT 59.249 55.000 27.68 6.92 44.64 5.28
2733 2777 1.958579 CTTATCATGGGTCGACCGGTA 59.041 52.381 27.68 16.90 44.64 4.02
2734 2778 2.070305 TATCATGGGTCGACCGGTAA 57.930 50.000 27.68 14.00 44.64 2.85
2735 2779 0.750850 ATCATGGGTCGACCGGTAAG 59.249 55.000 27.68 15.29 44.64 2.34
2736 2780 0.612732 TCATGGGTCGACCGGTAAGT 60.613 55.000 27.68 7.29 44.64 2.24
2737 2781 0.248289 CATGGGTCGACCGGTAAGTT 59.752 55.000 27.68 4.74 44.64 2.66
2738 2782 0.533951 ATGGGTCGACCGGTAAGTTC 59.466 55.000 27.68 12.04 44.64 3.01
2739 2783 1.216444 GGGTCGACCGGTAAGTTCC 59.784 63.158 27.68 11.73 36.71 3.62
2740 2784 1.253593 GGGTCGACCGGTAAGTTCCT 61.254 60.000 27.68 0.00 36.71 3.36
2741 2785 0.108945 GGTCGACCGGTAAGTTCCTG 60.109 60.000 20.85 0.00 0.00 3.86
2742 2786 0.883833 GTCGACCGGTAAGTTCCTGA 59.116 55.000 7.34 0.00 0.00 3.86
2743 2787 1.475682 GTCGACCGGTAAGTTCCTGAT 59.524 52.381 7.34 0.00 0.00 2.90
2744 2788 2.684881 GTCGACCGGTAAGTTCCTGATA 59.315 50.000 7.34 0.00 0.00 2.15
2745 2789 3.129287 GTCGACCGGTAAGTTCCTGATAA 59.871 47.826 7.34 0.00 0.00 1.75
2746 2790 3.379372 TCGACCGGTAAGTTCCTGATAAG 59.621 47.826 7.34 0.00 0.00 1.73
2747 2791 3.455327 GACCGGTAAGTTCCTGATAAGC 58.545 50.000 7.34 0.00 0.00 3.09
2748 2792 2.159142 ACCGGTAAGTTCCTGATAAGCG 60.159 50.000 4.49 0.00 0.00 4.68
2749 2793 2.100252 CCGGTAAGTTCCTGATAAGCGA 59.900 50.000 0.00 0.00 0.00 4.93
2750 2794 3.243771 CCGGTAAGTTCCTGATAAGCGAT 60.244 47.826 0.00 0.00 0.00 4.58
2751 2795 4.022589 CCGGTAAGTTCCTGATAAGCGATA 60.023 45.833 0.00 0.00 0.00 2.92
2752 2796 5.336531 CCGGTAAGTTCCTGATAAGCGATAT 60.337 44.000 0.00 0.00 0.00 1.63
2753 2797 5.800941 CGGTAAGTTCCTGATAAGCGATATC 59.199 44.000 5.82 5.82 40.79 1.63
2754 2798 6.100668 GGTAAGTTCCTGATAAGCGATATCC 58.899 44.000 9.26 0.00 39.83 2.59
2755 2799 4.810191 AGTTCCTGATAAGCGATATCCC 57.190 45.455 9.26 0.00 39.83 3.85
2756 2800 3.515901 AGTTCCTGATAAGCGATATCCCC 59.484 47.826 9.26 0.00 39.83 4.81
2757 2801 3.184382 TCCTGATAAGCGATATCCCCA 57.816 47.619 9.26 0.00 39.83 4.96
2758 2802 3.516586 TCCTGATAAGCGATATCCCCAA 58.483 45.455 9.26 0.00 39.83 4.12
2759 2803 4.104086 TCCTGATAAGCGATATCCCCAAT 58.896 43.478 9.26 0.00 39.83 3.16
2760 2804 5.277250 TCCTGATAAGCGATATCCCCAATA 58.723 41.667 9.26 0.00 39.83 1.90
2761 2805 5.905331 TCCTGATAAGCGATATCCCCAATAT 59.095 40.000 9.26 0.00 39.83 1.28
2762 2806 6.386927 TCCTGATAAGCGATATCCCCAATATT 59.613 38.462 9.26 0.00 39.83 1.28
2763 2807 6.484643 CCTGATAAGCGATATCCCCAATATTG 59.515 42.308 8.58 8.58 39.83 1.90
2764 2808 6.356556 TGATAAGCGATATCCCCAATATTGG 58.643 40.000 25.24 25.24 41.70 3.16
2765 2809 5.239525 GATAAGCGATATCCCCAATATTGGC 59.760 44.000 26.53 13.65 37.84 4.52
2766 2810 6.913369 GATAAGCGATATCCCCAATATTGGCT 60.913 42.308 26.53 15.52 39.84 4.75
2767 2811 8.858048 GATAAGCGATATCCCCAATATTGGCTG 61.858 44.444 26.53 19.33 38.93 4.85
2774 2818 2.849880 CCAATATTGGCTGGAACACG 57.150 50.000 21.32 0.00 42.21 4.49
2775 2819 2.364632 CCAATATTGGCTGGAACACGA 58.635 47.619 21.32 0.00 42.21 4.35
2776 2820 2.355756 CCAATATTGGCTGGAACACGAG 59.644 50.000 21.32 0.00 42.21 4.18
2777 2821 2.332063 ATATTGGCTGGAACACGAGG 57.668 50.000 0.00 0.00 0.00 4.63
2778 2822 0.981183 TATTGGCTGGAACACGAGGT 59.019 50.000 0.00 0.00 0.00 3.85
2779 2823 0.321653 ATTGGCTGGAACACGAGGTC 60.322 55.000 0.00 0.00 0.00 3.85
2780 2824 2.432628 GGCTGGAACACGAGGTCG 60.433 66.667 0.00 0.00 46.33 4.79
2800 2844 4.803426 GAGCTCCTCGTGGTGGCG 62.803 72.222 0.87 0.00 37.86 5.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
82 83 8.495949 CGTCACATTCTTCTGTGTTTAATAAGT 58.504 33.333 4.33 0.00 45.40 2.24
83 84 8.708742 TCGTCACATTCTTCTGTGTTTAATAAG 58.291 33.333 4.33 0.00 45.40 1.73
84 85 8.596271 TCGTCACATTCTTCTGTGTTTAATAA 57.404 30.769 4.33 0.00 45.40 1.40
102 103 1.613317 ATTGCCTCCGGATCGTCACA 61.613 55.000 3.57 0.00 0.00 3.58
210 214 9.228636 CTAAAAGCGTGTAAAACTGTTGTTATT 57.771 29.630 0.00 0.00 34.96 1.40
225 229 4.002906 TGGAATGTCTCTAAAAGCGTGT 57.997 40.909 0.00 0.00 0.00 4.49
292 296 6.617371 ACCTACTATTCTTCCCTTCATGATGT 59.383 38.462 0.00 0.00 0.00 3.06
330 334 1.086696 CACCCGGCACTCAATGTTAG 58.913 55.000 0.00 0.00 0.00 2.34
374 378 4.468510 TCCGGTTCTTCTCTTGCCTATAAA 59.531 41.667 0.00 0.00 0.00 1.40
377 381 2.467880 TCCGGTTCTTCTCTTGCCTAT 58.532 47.619 0.00 0.00 0.00 2.57
497 503 3.340727 GCATCTGCAGCCACATTTC 57.659 52.632 9.47 0.00 41.59 2.17
704 718 4.519906 ACTTTGTCTCTGAAAAGGGGAA 57.480 40.909 5.57 0.00 37.65 3.97
861 876 8.652290 TGGTTGGCTTGGTTTTAACTTTTATAT 58.348 29.630 0.00 0.00 0.00 0.86
916 952 3.467803 AGGAAGATTTATACTGGCGCAC 58.532 45.455 10.83 0.00 0.00 5.34
1395 1431 2.675423 TACAGCCTCACGCCGACT 60.675 61.111 0.00 0.00 38.78 4.18
1946 1989 0.322456 ACACGTGGGGGACATTGATG 60.322 55.000 21.57 0.00 0.00 3.07
1957 2000 1.733041 CGCTACACTGACACGTGGG 60.733 63.158 21.57 11.84 39.19 4.61
1981 2024 9.764870 GGAACACGATTATAAGGTTTTAAAGAC 57.235 33.333 0.00 0.00 0.00 3.01
2042 2086 1.480312 CCAAACTGGGGGACAATCACA 60.480 52.381 0.00 0.00 32.67 3.58
2054 2098 4.756630 GCCAAAGTGCCAAACTGG 57.243 55.556 0.00 0.00 39.81 4.00
2104 2148 0.536006 GGCGGATGGGAAGATTGGAG 60.536 60.000 0.00 0.00 0.00 3.86
2105 2149 1.531748 GGCGGATGGGAAGATTGGA 59.468 57.895 0.00 0.00 0.00 3.53
2106 2150 1.893808 CGGCGGATGGGAAGATTGG 60.894 63.158 0.00 0.00 0.00 3.16
2124 2168 0.392461 TACTCATCCGTGGCCAAAGC 60.392 55.000 7.24 0.00 38.76 3.51
2127 2171 0.908910 ACATACTCATCCGTGGCCAA 59.091 50.000 7.24 0.00 0.00 4.52
2128 2172 0.908910 AACATACTCATCCGTGGCCA 59.091 50.000 0.00 0.00 0.00 5.36
2143 2187 3.496515 CCAAGATTTTGTGGGGCAAACAT 60.497 43.478 0.00 0.00 45.70 2.71
2144 2188 2.158842 CCAAGATTTTGTGGGGCAAACA 60.159 45.455 0.00 0.00 45.70 2.83
2145 2189 2.493035 CCAAGATTTTGTGGGGCAAAC 58.507 47.619 0.00 0.00 45.70 2.93
2146 2190 1.202746 GCCAAGATTTTGTGGGGCAAA 60.203 47.619 0.00 0.00 44.52 3.68
2147 2191 0.396060 GCCAAGATTTTGTGGGGCAA 59.604 50.000 0.00 0.00 41.02 4.52
2148 2192 1.479368 GGCCAAGATTTTGTGGGGCA 61.479 55.000 0.00 0.00 43.09 5.36
2149 2193 1.296392 GGCCAAGATTTTGTGGGGC 59.704 57.895 0.00 0.00 40.63 5.80
2150 2194 1.887344 CGGGCCAAGATTTTGTGGGG 61.887 60.000 4.39 0.00 35.28 4.96
2151 2195 1.184970 ACGGGCCAAGATTTTGTGGG 61.185 55.000 4.39 0.00 35.28 4.61
2152 2196 1.540267 TACGGGCCAAGATTTTGTGG 58.460 50.000 4.39 0.00 38.00 4.17
2153 2197 3.651803 TTTACGGGCCAAGATTTTGTG 57.348 42.857 4.39 0.00 32.21 3.33
2154 2198 3.385111 TGTTTTACGGGCCAAGATTTTGT 59.615 39.130 4.39 0.00 32.21 2.83
2155 2199 3.738791 GTGTTTTACGGGCCAAGATTTTG 59.261 43.478 4.39 0.00 0.00 2.44
2156 2200 3.985008 GTGTTTTACGGGCCAAGATTTT 58.015 40.909 4.39 0.00 0.00 1.82
2157 2201 3.653539 GTGTTTTACGGGCCAAGATTT 57.346 42.857 4.39 0.00 0.00 2.17
2169 2213 6.023103 CGTGTCAAACTGTAAACGTGTTTTAC 60.023 38.462 2.97 0.00 46.89 2.01
2170 2214 6.014293 CGTGTCAAACTGTAAACGTGTTTTA 58.986 36.000 2.97 0.00 32.42 1.52
2171 2215 4.847217 CGTGTCAAACTGTAAACGTGTTTT 59.153 37.500 2.97 0.00 32.42 2.43
2172 2216 4.396519 CGTGTCAAACTGTAAACGTGTTT 58.603 39.130 3.21 3.21 34.69 2.83
2173 2217 3.181518 CCGTGTCAAACTGTAAACGTGTT 60.182 43.478 0.00 0.00 0.00 3.32
2174 2218 2.349275 CCGTGTCAAACTGTAAACGTGT 59.651 45.455 0.00 0.00 0.00 4.49
2175 2219 2.604011 TCCGTGTCAAACTGTAAACGTG 59.396 45.455 0.00 0.00 0.00 4.49
2176 2220 2.891112 TCCGTGTCAAACTGTAAACGT 58.109 42.857 0.00 0.00 0.00 3.99
2177 2221 3.307782 AGTTCCGTGTCAAACTGTAAACG 59.692 43.478 0.00 0.00 34.52 3.60
2178 2222 4.549489 CGAGTTCCGTGTCAAACTGTAAAC 60.549 45.833 0.00 0.00 35.90 2.01
2179 2223 3.552699 CGAGTTCCGTGTCAAACTGTAAA 59.447 43.478 0.00 0.00 35.90 2.01
2180 2224 3.117794 CGAGTTCCGTGTCAAACTGTAA 58.882 45.455 0.00 0.00 35.90 2.41
2181 2225 2.734670 CGAGTTCCGTGTCAAACTGTA 58.265 47.619 0.00 0.00 35.90 2.74
2182 2226 1.567504 CGAGTTCCGTGTCAAACTGT 58.432 50.000 0.00 0.00 35.90 3.55
2193 2237 2.663852 ACCCGCAAACGAGTTCCG 60.664 61.111 0.00 0.00 43.93 4.30
2194 2238 2.664436 CGACCCGCAAACGAGTTCC 61.664 63.158 0.00 0.00 43.93 3.62
2195 2239 1.216941 TTCGACCCGCAAACGAGTTC 61.217 55.000 0.00 0.00 43.93 3.01
2196 2240 0.810823 TTTCGACCCGCAAACGAGTT 60.811 50.000 0.00 0.00 43.93 3.01
2197 2241 0.810823 TTTTCGACCCGCAAACGAGT 60.811 50.000 0.00 0.00 43.93 4.18
2198 2242 0.383860 GTTTTCGACCCGCAAACGAG 60.384 55.000 0.00 0.00 43.93 4.18
2199 2243 1.642753 GTTTTCGACCCGCAAACGA 59.357 52.632 0.00 0.00 43.93 3.85
2200 2244 4.199130 GTTTTCGACCCGCAAACG 57.801 55.556 0.00 0.00 34.14 3.60
2210 2254 2.730006 TCGGCTACGCACGTTTTCGA 62.730 55.000 0.00 5.75 42.46 3.71
2211 2255 1.878524 TTCGGCTACGCACGTTTTCG 61.879 55.000 0.00 3.41 44.18 3.46
2212 2256 0.449993 GTTCGGCTACGCACGTTTTC 60.450 55.000 0.00 0.00 40.69 2.29
2213 2257 1.152989 TGTTCGGCTACGCACGTTTT 61.153 50.000 0.00 0.00 39.12 2.43
2214 2258 1.554042 CTGTTCGGCTACGCACGTTT 61.554 55.000 0.00 0.00 39.12 3.60
2215 2259 2.019951 CTGTTCGGCTACGCACGTT 61.020 57.895 0.00 0.00 39.12 3.99
2216 2260 2.410638 TTCTGTTCGGCTACGCACGT 62.411 55.000 0.00 0.00 39.12 4.49
2217 2261 1.279527 TTTCTGTTCGGCTACGCACG 61.280 55.000 0.00 0.00 39.12 5.34
2218 2262 0.163146 GTTTCTGTTCGGCTACGCAC 59.837 55.000 0.00 0.00 40.69 5.34
2219 2263 0.947180 GGTTTCTGTTCGGCTACGCA 60.947 55.000 0.00 0.00 40.69 5.24
2220 2264 0.947180 TGGTTTCTGTTCGGCTACGC 60.947 55.000 0.00 0.00 40.69 4.42
2221 2265 1.722011 ATGGTTTCTGTTCGGCTACG 58.278 50.000 0.00 0.00 42.74 3.51
2222 2266 7.600065 TCTATATATGGTTTCTGTTCGGCTAC 58.400 38.462 0.00 0.00 0.00 3.58
2223 2267 7.770366 TCTATATATGGTTTCTGTTCGGCTA 57.230 36.000 0.00 0.00 0.00 3.93
2224 2268 6.665992 TCTATATATGGTTTCTGTTCGGCT 57.334 37.500 0.00 0.00 0.00 5.52
2225 2269 6.704493 TGTTCTATATATGGTTTCTGTTCGGC 59.296 38.462 0.00 0.00 0.00 5.54
2226 2270 8.833231 ATGTTCTATATATGGTTTCTGTTCGG 57.167 34.615 0.00 0.00 0.00 4.30
2227 2271 9.476202 TGATGTTCTATATATGGTTTCTGTTCG 57.524 33.333 0.00 0.00 0.00 3.95
2265 2309 5.415221 TGCAATTTCTCCGTGAAACTTTTT 58.585 33.333 3.48 0.00 46.08 1.94
2266 2310 5.004922 TGCAATTTCTCCGTGAAACTTTT 57.995 34.783 3.48 0.00 46.08 2.27
2267 2311 4.647424 TGCAATTTCTCCGTGAAACTTT 57.353 36.364 3.48 0.00 46.08 2.66
2268 2312 4.359706 GTTGCAATTTCTCCGTGAAACTT 58.640 39.130 0.59 0.00 46.08 2.66
2269 2313 3.243401 GGTTGCAATTTCTCCGTGAAACT 60.243 43.478 0.59 0.00 46.08 2.66
2270 2314 3.049912 GGTTGCAATTTCTCCGTGAAAC 58.950 45.455 0.59 0.00 46.08 2.78
2272 2316 1.265635 CGGTTGCAATTTCTCCGTGAA 59.734 47.619 15.25 0.00 36.99 3.18
2273 2317 0.871722 CGGTTGCAATTTCTCCGTGA 59.128 50.000 15.25 0.00 36.99 4.35
2274 2318 3.383026 CGGTTGCAATTTCTCCGTG 57.617 52.632 15.25 0.00 36.99 4.94
2276 2320 2.073816 ACTACGGTTGCAATTTCTCCG 58.926 47.619 20.24 20.24 45.53 4.63
2277 2321 5.813080 ATTACTACGGTTGCAATTTCTCC 57.187 39.130 0.59 0.00 0.00 3.71
2278 2322 6.837992 TGAATTACTACGGTTGCAATTTCTC 58.162 36.000 0.59 0.00 0.00 2.87
2279 2323 6.811253 TGAATTACTACGGTTGCAATTTCT 57.189 33.333 0.59 0.00 0.00 2.52
2280 2324 7.218204 GTGATGAATTACTACGGTTGCAATTTC 59.782 37.037 0.59 0.00 0.00 2.17
2281 2325 7.027161 GTGATGAATTACTACGGTTGCAATTT 58.973 34.615 0.59 0.00 0.00 1.82
2282 2326 6.150307 TGTGATGAATTACTACGGTTGCAATT 59.850 34.615 0.59 1.27 0.00 2.32
2283 2327 5.645929 TGTGATGAATTACTACGGTTGCAAT 59.354 36.000 0.59 0.00 0.00 3.56
2284 2328 4.998033 TGTGATGAATTACTACGGTTGCAA 59.002 37.500 0.00 0.00 0.00 4.08
2285 2329 4.570930 TGTGATGAATTACTACGGTTGCA 58.429 39.130 0.00 0.00 0.00 4.08
2286 2330 5.734855 ATGTGATGAATTACTACGGTTGC 57.265 39.130 0.00 0.00 0.00 4.17
2287 2331 8.965172 GTAGTATGTGATGAATTACTACGGTTG 58.035 37.037 0.00 0.00 33.31 3.77
2288 2332 8.689061 TGTAGTATGTGATGAATTACTACGGTT 58.311 33.333 12.07 0.00 41.38 4.44
2289 2333 8.229253 TGTAGTATGTGATGAATTACTACGGT 57.771 34.615 12.07 0.00 41.38 4.83
2347 2391 9.388506 ACGTAGTATGTAGTATGAACTAGTGTT 57.611 33.333 0.00 0.00 41.94 3.32
2348 2392 8.954950 ACGTAGTATGTAGTATGAACTAGTGT 57.045 34.615 0.00 0.00 41.94 3.55
2349 2393 9.861138 GAACGTAGTATGTAGTATGAACTAGTG 57.139 37.037 0.00 0.00 45.00 2.74
2350 2394 9.605275 TGAACGTAGTATGTAGTATGAACTAGT 57.395 33.333 0.00 0.00 45.00 2.57
2351 2395 9.861138 GTGAACGTAGTATGTAGTATGAACTAG 57.139 37.037 0.00 0.00 45.00 2.57
2352 2396 9.605275 AGTGAACGTAGTATGTAGTATGAACTA 57.395 33.333 0.00 0.00 45.00 2.24
2353 2397 8.503458 AGTGAACGTAGTATGTAGTATGAACT 57.497 34.615 0.00 0.00 45.00 3.01
2354 2398 9.643652 GTAGTGAACGTAGTATGTAGTATGAAC 57.356 37.037 0.00 0.00 45.00 3.18
2355 2399 9.605275 AGTAGTGAACGTAGTATGTAGTATGAA 57.395 33.333 0.00 0.00 45.00 2.57
2360 2404 9.522804 GTACTAGTAGTGAACGTAGTATGTAGT 57.477 37.037 13.29 0.00 45.00 2.73
2361 2405 9.743057 AGTACTAGTAGTGAACGTAGTATGTAG 57.257 37.037 13.29 0.00 45.00 2.74
2363 2407 9.743057 CTAGTACTAGTAGTGAACGTAGTATGT 57.257 37.037 20.01 0.00 45.00 2.29
2364 2408 9.958234 TCTAGTACTAGTAGTGAACGTAGTATG 57.042 37.037 25.58 0.00 35.27 2.39
2366 2410 8.625651 CCTCTAGTACTAGTAGTGAACGTAGTA 58.374 40.741 25.58 4.32 35.27 1.82
2367 2411 7.417342 CCCTCTAGTACTAGTAGTGAACGTAGT 60.417 44.444 25.58 0.00 37.01 2.73
2368 2412 6.922957 CCCTCTAGTACTAGTAGTGAACGTAG 59.077 46.154 25.58 13.36 34.84 3.51
2369 2413 6.183360 CCCCTCTAGTACTAGTAGTGAACGTA 60.183 46.154 25.58 5.35 34.84 3.57
2370 2414 5.396213 CCCCTCTAGTACTAGTAGTGAACGT 60.396 48.000 25.58 0.00 34.84 3.99
2371 2415 5.055812 CCCCTCTAGTACTAGTAGTGAACG 58.944 50.000 25.58 10.76 34.84 3.95
2372 2416 5.104151 ACCCCCTCTAGTACTAGTAGTGAAC 60.104 48.000 25.58 4.14 34.84 3.18
2373 2417 5.042387 ACCCCCTCTAGTACTAGTAGTGAA 58.958 45.833 25.58 7.95 34.84 3.18
2374 2418 4.411540 CACCCCCTCTAGTACTAGTAGTGA 59.588 50.000 25.58 12.90 34.84 3.41
2375 2419 4.446023 CCACCCCCTCTAGTACTAGTAGTG 60.446 54.167 25.58 22.64 34.84 2.74
2376 2420 3.721050 CCACCCCCTCTAGTACTAGTAGT 59.279 52.174 25.58 14.57 34.84 2.73
2377 2421 3.074242 CCCACCCCCTCTAGTACTAGTAG 59.926 56.522 25.58 20.36 34.84 2.57
2378 2422 3.059097 CCCACCCCCTCTAGTACTAGTA 58.941 54.545 25.58 13.72 34.84 1.82
2379 2423 1.858246 CCCACCCCCTCTAGTACTAGT 59.142 57.143 25.58 0.00 34.84 2.57
2380 2424 1.147399 CCCCACCCCCTCTAGTACTAG 59.853 61.905 21.87 21.87 34.56 2.57
2381 2425 1.238615 CCCCACCCCCTCTAGTACTA 58.761 60.000 1.89 1.89 0.00 1.82
2382 2426 0.556888 TCCCCACCCCCTCTAGTACT 60.557 60.000 0.00 0.00 0.00 2.73
2383 2427 0.566679 ATCCCCACCCCCTCTAGTAC 59.433 60.000 0.00 0.00 0.00 2.73
2384 2428 0.865362 GATCCCCACCCCCTCTAGTA 59.135 60.000 0.00 0.00 0.00 1.82
2385 2429 0.936863 AGATCCCCACCCCCTCTAGT 60.937 60.000 0.00 0.00 0.00 2.57
2386 2430 1.167943 TAGATCCCCACCCCCTCTAG 58.832 60.000 0.00 0.00 0.00 2.43
2387 2431 1.222298 GTTAGATCCCCACCCCCTCTA 59.778 57.143 0.00 0.00 0.00 2.43
2388 2432 0.029989 GTTAGATCCCCACCCCCTCT 60.030 60.000 0.00 0.00 0.00 3.69
2389 2433 1.408453 CGTTAGATCCCCACCCCCTC 61.408 65.000 0.00 0.00 0.00 4.30
2390 2434 1.384082 CGTTAGATCCCCACCCCCT 60.384 63.158 0.00 0.00 0.00 4.79
2391 2435 2.449450 CCGTTAGATCCCCACCCCC 61.449 68.421 0.00 0.00 0.00 5.40
2392 2436 3.116137 GCCGTTAGATCCCCACCCC 62.116 68.421 0.00 0.00 0.00 4.95
2393 2437 2.509422 GCCGTTAGATCCCCACCC 59.491 66.667 0.00 0.00 0.00 4.61
2394 2438 2.108362 CGCCGTTAGATCCCCACC 59.892 66.667 0.00 0.00 0.00 4.61
2395 2439 2.108362 CCGCCGTTAGATCCCCAC 59.892 66.667 0.00 0.00 0.00 4.61
2396 2440 3.857038 GCCGCCGTTAGATCCCCA 61.857 66.667 0.00 0.00 0.00 4.96
2397 2441 4.963428 CGCCGCCGTTAGATCCCC 62.963 72.222 0.00 0.00 0.00 4.81
2398 2442 3.843117 CTCGCCGCCGTTAGATCCC 62.843 68.421 0.00 0.00 35.54 3.85
2399 2443 2.354773 CTCGCCGCCGTTAGATCC 60.355 66.667 0.00 0.00 35.54 3.36
2400 2444 3.030882 GCTCGCCGCCGTTAGATC 61.031 66.667 0.00 0.00 35.54 2.75
2401 2445 3.486252 GAGCTCGCCGCCGTTAGAT 62.486 63.158 0.00 0.00 40.39 1.98
2402 2446 4.189188 GAGCTCGCCGCCGTTAGA 62.189 66.667 0.00 0.00 40.39 2.10
2425 2469 4.429212 TCCACCGCGTCGTCCATG 62.429 66.667 4.92 0.00 0.00 3.66
2426 2470 4.129737 CTCCACCGCGTCGTCCAT 62.130 66.667 4.92 0.00 0.00 3.41
2429 2473 4.477975 CTCCTCCACCGCGTCGTC 62.478 72.222 4.92 0.00 0.00 4.20
2432 2476 4.500116 GAGCTCCTCCACCGCGTC 62.500 72.222 4.92 0.00 0.00 5.19
2434 2478 3.376935 ATTGAGCTCCTCCACCGCG 62.377 63.158 12.15 0.00 0.00 6.46
2435 2479 1.522580 GATTGAGCTCCTCCACCGC 60.523 63.158 12.15 0.00 0.00 5.68
2436 2480 1.144936 GGATTGAGCTCCTCCACCG 59.855 63.158 21.67 0.00 32.18 4.94
2437 2481 2.614001 AGGATTGAGCTCCTCCACC 58.386 57.895 25.98 16.01 42.12 4.61
2443 2487 1.535015 CGACGAAGAGGATTGAGCTCC 60.535 57.143 12.15 0.00 35.37 4.70
2444 2488 1.833860 CGACGAAGAGGATTGAGCTC 58.166 55.000 6.82 6.82 0.00 4.09
2445 2489 0.179124 GCGACGAAGAGGATTGAGCT 60.179 55.000 0.00 0.00 0.00 4.09
2446 2490 0.458543 TGCGACGAAGAGGATTGAGC 60.459 55.000 0.00 0.00 0.00 4.26
2447 2491 1.554392 CTGCGACGAAGAGGATTGAG 58.446 55.000 0.00 0.00 0.00 3.02
2448 2492 0.458543 GCTGCGACGAAGAGGATTGA 60.459 55.000 7.14 0.00 0.00 2.57
2449 2493 0.459237 AGCTGCGACGAAGAGGATTG 60.459 55.000 7.14 0.00 0.00 2.67
2450 2494 0.459237 CAGCTGCGACGAAGAGGATT 60.459 55.000 7.14 0.00 0.00 3.01
2451 2495 1.140589 CAGCTGCGACGAAGAGGAT 59.859 57.895 7.14 0.00 0.00 3.24
2452 2496 2.568612 CAGCTGCGACGAAGAGGA 59.431 61.111 7.14 0.00 0.00 3.71
2453 2497 3.184683 GCAGCTGCGACGAAGAGG 61.185 66.667 25.23 0.00 0.00 3.69
2454 2498 3.184683 GGCAGCTGCGACGAAGAG 61.185 66.667 31.19 0.00 43.26 2.85
2463 2507 4.521062 ATCGACCTCGGCAGCTGC 62.521 66.667 30.88 30.88 40.29 5.25
2464 2508 2.004808 TACATCGACCTCGGCAGCTG 62.005 60.000 10.11 10.11 40.29 4.24
2465 2509 1.753078 TACATCGACCTCGGCAGCT 60.753 57.895 0.00 0.00 40.29 4.24
2466 2510 1.589196 GTACATCGACCTCGGCAGC 60.589 63.158 0.00 0.00 40.29 5.25
2467 2511 0.456221 AAGTACATCGACCTCGGCAG 59.544 55.000 0.00 0.00 40.29 4.85
2468 2512 0.454600 GAAGTACATCGACCTCGGCA 59.545 55.000 0.00 0.00 40.29 5.69
2469 2513 0.591741 CGAAGTACATCGACCTCGGC 60.592 60.000 15.03 0.00 45.48 5.54
2470 2514 0.591741 GCGAAGTACATCGACCTCGG 60.592 60.000 23.43 0.00 45.48 4.63
2471 2515 0.591741 GGCGAAGTACATCGACCTCG 60.592 60.000 23.43 6.94 45.14 4.63
2472 2516 3.253416 GGCGAAGTACATCGACCTC 57.747 57.895 23.43 6.04 45.14 3.85
2476 2520 1.469251 GCAGAAGGCGAAGTACATCGA 60.469 52.381 23.43 0.00 45.48 3.59
2477 2521 0.924090 GCAGAAGGCGAAGTACATCG 59.076 55.000 15.76 15.76 45.41 3.84
2511 2555 3.966026 GAAGGACGACGAGTGGCGG 62.966 68.421 0.00 0.00 46.49 6.13
2513 2557 1.153997 GAGAAGGACGACGAGTGGC 60.154 63.158 0.00 0.00 0.00 5.01
2514 2558 0.961358 AGGAGAAGGACGACGAGTGG 60.961 60.000 0.00 0.00 0.00 4.00
2515 2559 0.882474 AAGGAGAAGGACGACGAGTG 59.118 55.000 0.00 0.00 0.00 3.51
2516 2560 0.882474 CAAGGAGAAGGACGACGAGT 59.118 55.000 0.00 0.00 0.00 4.18
2517 2561 0.171455 CCAAGGAGAAGGACGACGAG 59.829 60.000 0.00 0.00 0.00 4.18
2518 2562 1.874345 GCCAAGGAGAAGGACGACGA 61.874 60.000 0.00 0.00 0.00 4.20
2519 2563 1.446272 GCCAAGGAGAAGGACGACG 60.446 63.158 0.00 0.00 0.00 5.12
2520 2564 1.446272 CGCCAAGGAGAAGGACGAC 60.446 63.158 0.00 0.00 0.00 4.34
2521 2565 2.646175 CCGCCAAGGAGAAGGACGA 61.646 63.158 0.00 0.00 45.00 4.20
2522 2566 2.125512 CCGCCAAGGAGAAGGACG 60.126 66.667 0.00 0.00 45.00 4.79
2523 2567 2.436824 GCCGCCAAGGAGAAGGAC 60.437 66.667 0.00 0.00 45.00 3.85
2524 2568 2.469465 CTTGCCGCCAAGGAGAAGGA 62.469 60.000 0.00 0.00 43.75 3.36
2525 2569 2.034066 TTGCCGCCAAGGAGAAGG 59.966 61.111 0.00 0.00 45.00 3.46
2526 2570 3.583383 CTTGCCGCCAAGGAGAAG 58.417 61.111 0.00 0.00 43.75 2.85
2532 2576 4.404654 GCGAACCTTGCCGCCAAG 62.405 66.667 0.00 0.00 46.38 3.61
2557 2601 0.668401 GAACAATGGTTGCAGCAGGC 60.668 55.000 2.05 0.00 45.13 4.85
2558 2602 0.675083 TGAACAATGGTTGCAGCAGG 59.325 50.000 2.05 0.00 37.36 4.85
2559 2603 2.034939 TCTTGAACAATGGTTGCAGCAG 59.965 45.455 2.05 0.00 37.36 4.24
2560 2604 2.030371 TCTTGAACAATGGTTGCAGCA 58.970 42.857 2.05 0.00 37.36 4.41
2561 2605 2.798976 TCTTGAACAATGGTTGCAGC 57.201 45.000 0.00 0.00 37.36 5.25
2562 2606 6.446781 AGATATCTTGAACAATGGTTGCAG 57.553 37.500 0.00 0.00 37.36 4.41
2563 2607 6.127647 GGAAGATATCTTGAACAATGGTTGCA 60.128 38.462 22.61 0.00 35.11 4.08
2564 2608 6.268566 GGAAGATATCTTGAACAATGGTTGC 58.731 40.000 22.61 3.36 35.11 4.17
2565 2609 6.316140 TCGGAAGATATCTTGAACAATGGTTG 59.684 38.462 22.61 0.00 35.11 3.77
2566 2610 6.414732 TCGGAAGATATCTTGAACAATGGTT 58.585 36.000 22.61 0.00 36.71 3.67
2567 2611 5.989477 TCGGAAGATATCTTGAACAATGGT 58.011 37.500 22.61 0.00 36.11 3.55
2581 2625 7.921214 GCTGATTTATCGGAATATCGGAAGATA 59.079 37.037 2.75 0.00 44.89 1.98
2582 2626 6.758886 GCTGATTTATCGGAATATCGGAAGAT 59.241 38.462 2.75 0.00 43.88 2.40
2583 2627 6.100004 GCTGATTTATCGGAATATCGGAAGA 58.900 40.000 2.75 0.00 39.05 2.87
2584 2628 5.292101 GGCTGATTTATCGGAATATCGGAAG 59.708 44.000 2.75 0.00 35.13 3.46
2585 2629 5.175859 GGCTGATTTATCGGAATATCGGAA 58.824 41.667 2.75 0.00 35.13 4.30
2586 2630 4.676986 CGGCTGATTTATCGGAATATCGGA 60.677 45.833 2.75 0.00 35.13 4.55
2587 2631 3.551890 CGGCTGATTTATCGGAATATCGG 59.448 47.826 2.75 0.00 35.13 4.18
2588 2632 4.421058 TCGGCTGATTTATCGGAATATCG 58.579 43.478 2.75 0.00 35.13 2.92
2589 2633 6.910536 AATCGGCTGATTTATCGGAATATC 57.089 37.500 15.26 0.00 42.14 1.63
2599 2643 8.051168 TCGATAAGCGATAAATCGGCTGATTTA 61.051 37.037 32.58 32.58 46.70 1.40
2616 2660 1.002792 TCGGTCAGACATCGATAAGCG 60.003 52.381 0.00 3.60 42.69 4.68
2617 2661 2.776312 TCGGTCAGACATCGATAAGC 57.224 50.000 0.00 0.00 0.00 3.09
2619 2663 5.529800 TGTCTTATCGGTCAGACATCGATAA 59.470 40.000 22.73 22.73 46.65 1.75
2620 2664 5.061179 TGTCTTATCGGTCAGACATCGATA 58.939 41.667 8.63 14.48 43.63 2.92
2621 2665 3.883489 TGTCTTATCGGTCAGACATCGAT 59.117 43.478 8.63 16.07 43.63 3.59
2622 2666 3.275999 TGTCTTATCGGTCAGACATCGA 58.724 45.455 8.63 3.58 43.63 3.59
2623 2667 3.692791 TGTCTTATCGGTCAGACATCG 57.307 47.619 8.63 0.00 43.63 3.84
2624 2668 5.174035 CGATTTGTCTTATCGGTCAGACATC 59.826 44.000 13.24 8.25 46.86 3.06
2625 2669 5.043903 CGATTTGTCTTATCGGTCAGACAT 58.956 41.667 13.24 0.00 46.86 3.06
2626 2670 4.421058 CGATTTGTCTTATCGGTCAGACA 58.579 43.478 8.63 8.63 46.18 3.41
2634 2678 1.847818 TCGGCCGATTTGTCTTATCG 58.152 50.000 27.28 0.00 43.32 2.92
2635 2679 5.917541 TTTATCGGCCGATTTGTCTTATC 57.082 39.130 42.74 0.00 36.17 1.75
2636 2680 5.995282 TGATTTATCGGCCGATTTGTCTTAT 59.005 36.000 42.74 24.06 36.17 1.73
2637 2681 5.361427 TGATTTATCGGCCGATTTGTCTTA 58.639 37.500 42.74 22.50 36.17 2.10
2638 2682 4.196193 TGATTTATCGGCCGATTTGTCTT 58.804 39.130 42.74 22.56 36.17 3.01
2639 2683 3.804036 TGATTTATCGGCCGATTTGTCT 58.196 40.909 42.74 23.33 36.17 3.41
2640 2684 4.133856 CTGATTTATCGGCCGATTTGTC 57.866 45.455 42.74 32.87 36.17 3.18
2672 2716 3.766151 TCGGCATATCGGTCGATTTATC 58.234 45.455 11.20 0.31 40.41 1.75
2673 2717 3.861276 TCGGCATATCGGTCGATTTAT 57.139 42.857 11.20 0.00 40.41 1.40
2679 2723 2.661675 CTGTTTATCGGCATATCGGTCG 59.338 50.000 0.00 0.00 37.19 4.79
2680 2724 2.993899 CCTGTTTATCGGCATATCGGTC 59.006 50.000 0.00 0.00 0.00 4.79
2681 2725 2.870435 GCCTGTTTATCGGCATATCGGT 60.870 50.000 0.00 0.00 45.59 4.69
2682 2726 1.732259 GCCTGTTTATCGGCATATCGG 59.268 52.381 0.00 0.00 45.59 4.18
2689 2733 1.021968 AAATCGGCCTGTTTATCGGC 58.978 50.000 0.00 0.00 45.55 5.54
2690 2734 2.032924 GGAAAATCGGCCTGTTTATCGG 59.967 50.000 0.00 0.00 0.00 4.18
2691 2735 2.032924 GGGAAAATCGGCCTGTTTATCG 59.967 50.000 0.00 0.00 0.00 2.92
2692 2736 2.361119 GGGGAAAATCGGCCTGTTTATC 59.639 50.000 0.00 2.98 0.00 1.75
2693 2737 2.024369 AGGGGAAAATCGGCCTGTTTAT 60.024 45.455 0.00 0.00 0.00 1.40
2694 2738 1.356398 AGGGGAAAATCGGCCTGTTTA 59.644 47.619 0.00 0.00 0.00 2.01
2695 2739 0.114364 AGGGGAAAATCGGCCTGTTT 59.886 50.000 0.00 0.00 0.00 2.83
2696 2740 0.114364 AAGGGGAAAATCGGCCTGTT 59.886 50.000 0.00 0.00 0.00 3.16
2697 2741 0.996583 TAAGGGGAAAATCGGCCTGT 59.003 50.000 0.00 0.00 0.00 4.00
2698 2742 2.230660 GATAAGGGGAAAATCGGCCTG 58.769 52.381 0.00 0.00 0.00 4.85
2699 2743 1.850345 TGATAAGGGGAAAATCGGCCT 59.150 47.619 0.00 0.00 0.00 5.19
2700 2744 2.358322 TGATAAGGGGAAAATCGGCC 57.642 50.000 0.00 0.00 0.00 6.13
2701 2745 2.558359 CCATGATAAGGGGAAAATCGGC 59.442 50.000 0.00 0.00 0.00 5.54
2712 2756 0.033504 CCGGTCGACCCATGATAAGG 59.966 60.000 28.52 16.89 0.00 2.69
2713 2757 0.750850 ACCGGTCGACCCATGATAAG 59.249 55.000 28.52 11.69 0.00 1.73
2714 2758 2.070305 TACCGGTCGACCCATGATAA 57.930 50.000 28.52 4.76 0.00 1.75
2715 2759 1.958579 CTTACCGGTCGACCCATGATA 59.041 52.381 28.52 10.91 0.00 2.15
2716 2760 0.750850 CTTACCGGTCGACCCATGAT 59.249 55.000 28.52 11.89 0.00 2.45
2717 2761 0.612732 ACTTACCGGTCGACCCATGA 60.613 55.000 28.52 12.51 0.00 3.07
2718 2762 0.248289 AACTTACCGGTCGACCCATG 59.752 55.000 28.52 18.87 0.00 3.66
2719 2763 0.533951 GAACTTACCGGTCGACCCAT 59.466 55.000 28.52 18.71 0.00 4.00
2720 2764 1.535204 GGAACTTACCGGTCGACCCA 61.535 60.000 28.52 11.47 0.00 4.51
2721 2765 1.216444 GGAACTTACCGGTCGACCC 59.784 63.158 28.52 11.63 0.00 4.46
2722 2766 0.108945 CAGGAACTTACCGGTCGACC 60.109 60.000 25.28 25.28 34.60 4.79
2723 2767 0.883833 TCAGGAACTTACCGGTCGAC 59.116 55.000 12.40 7.13 34.60 4.20
2724 2768 1.843368 ATCAGGAACTTACCGGTCGA 58.157 50.000 12.40 0.00 34.60 4.20
2725 2769 3.703420 CTTATCAGGAACTTACCGGTCG 58.297 50.000 12.40 6.27 34.60 4.79
2726 2770 3.455327 GCTTATCAGGAACTTACCGGTC 58.545 50.000 12.40 0.00 34.60 4.79
2727 2771 2.159142 CGCTTATCAGGAACTTACCGGT 60.159 50.000 13.98 13.98 34.60 5.28
2728 2772 2.100252 TCGCTTATCAGGAACTTACCGG 59.900 50.000 0.00 0.00 34.60 5.28
2729 2773 3.431922 TCGCTTATCAGGAACTTACCG 57.568 47.619 0.00 0.00 34.60 4.02
2730 2774 6.100668 GGATATCGCTTATCAGGAACTTACC 58.899 44.000 0.00 0.00 38.82 2.85
2731 2775 6.100668 GGGATATCGCTTATCAGGAACTTAC 58.899 44.000 12.31 0.00 38.82 2.34
2732 2776 5.187186 GGGGATATCGCTTATCAGGAACTTA 59.813 44.000 18.21 0.00 38.82 2.24
2733 2777 4.020128 GGGGATATCGCTTATCAGGAACTT 60.020 45.833 18.21 0.00 38.82 2.66
2734 2778 3.515901 GGGGATATCGCTTATCAGGAACT 59.484 47.826 18.21 0.00 38.82 3.01
2735 2779 3.260884 TGGGGATATCGCTTATCAGGAAC 59.739 47.826 18.21 0.00 38.82 3.62
2736 2780 3.516586 TGGGGATATCGCTTATCAGGAA 58.483 45.455 18.21 0.00 38.82 3.36
2737 2781 3.184382 TGGGGATATCGCTTATCAGGA 57.816 47.619 18.21 0.00 38.82 3.86
2738 2782 3.981071 TTGGGGATATCGCTTATCAGG 57.019 47.619 18.21 0.00 38.82 3.86
2739 2783 6.484643 CCAATATTGGGGATATCGCTTATCAG 59.515 42.308 24.61 9.79 44.70 2.90
2740 2784 6.356556 CCAATATTGGGGATATCGCTTATCA 58.643 40.000 24.61 6.11 44.70 2.15
2741 2785 6.867662 CCAATATTGGGGATATCGCTTATC 57.132 41.667 24.61 3.65 44.70 1.75
2756 2800 2.355756 CCTCGTGTTCCAGCCAATATTG 59.644 50.000 8.58 8.58 0.00 1.90
2757 2801 2.026262 ACCTCGTGTTCCAGCCAATATT 60.026 45.455 0.00 0.00 0.00 1.28
2758 2802 1.559682 ACCTCGTGTTCCAGCCAATAT 59.440 47.619 0.00 0.00 0.00 1.28
2759 2803 0.981183 ACCTCGTGTTCCAGCCAATA 59.019 50.000 0.00 0.00 0.00 1.90
2760 2804 0.321653 GACCTCGTGTTCCAGCCAAT 60.322 55.000 0.00 0.00 0.00 3.16
2761 2805 1.070786 GACCTCGTGTTCCAGCCAA 59.929 57.895 0.00 0.00 0.00 4.52
2762 2806 2.741092 GACCTCGTGTTCCAGCCA 59.259 61.111 0.00 0.00 0.00 4.75
2763 2807 2.432628 CGACCTCGTGTTCCAGCC 60.433 66.667 0.00 0.00 34.11 4.85
2773 2817 2.815298 GAGGAGCTCGACGACCTCG 61.815 68.421 14.94 0.00 44.44 4.63
2774 2818 3.103875 GAGGAGCTCGACGACCTC 58.896 66.667 14.94 14.94 41.31 3.85
2783 2827 4.803426 CGCCACCACGAGGAGCTC 62.803 72.222 5.68 4.71 38.69 4.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.