Multiple sequence alignment - TraesCS5D01G073000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G073000 chr5D 100.000 3594 0 0 1 3594 72491041 72494634 0.000000e+00 6637.0
1 TraesCS5D01G073000 chr5D 77.759 1187 235 24 1034 2206 72362249 72363420 0.000000e+00 702.0
2 TraesCS5D01G073000 chr5D 77.019 1201 195 51 1035 2201 72400912 72402065 6.590000e-172 614.0
3 TraesCS5D01G073000 chr5D 79.895 572 97 13 1036 1595 6932930 6932365 1.550000e-108 403.0
4 TraesCS5D01G073000 chr5A 87.568 2027 193 26 801 2797 64942877 64944874 0.000000e+00 2292.0
5 TraesCS5D01G073000 chr5A 74.788 1182 229 39 1065 2201 3032954 3034111 5.430000e-128 468.0
6 TraesCS5D01G073000 chr5A 74.662 1184 227 44 1065 2201 2929238 2930395 1.180000e-124 457.0
7 TraesCS5D01G073000 chr5A 74.692 1217 213 56 1034 2201 2934653 2935823 1.520000e-123 453.0
8 TraesCS5D01G073000 chr5A 87.071 379 38 1 2084 2451 64950416 64950794 5.550000e-113 418.0
9 TraesCS5D01G073000 chr5A 87.747 253 30 1 1 252 64942001 64942253 9.760000e-76 294.0
10 TraesCS5D01G073000 chr5A 90.426 94 8 1 519 612 64942240 64942332 4.870000e-24 122.0
11 TraesCS5D01G073000 chr5A 87.640 89 11 0 3234 3322 64945687 64945775 1.770000e-18 104.0
12 TraesCS5D01G073000 chr5B 89.003 1855 177 12 850 2697 82046055 82044221 0.000000e+00 2270.0
13 TraesCS5D01G073000 chr5B 91.347 1329 91 8 850 2170 81625670 81624358 0.000000e+00 1796.0
14 TraesCS5D01G073000 chr5B 85.639 1142 124 17 1636 2748 81562407 81561277 0.000000e+00 1164.0
15 TraesCS5D01G073000 chr5B 77.227 1190 234 31 1035 2206 82171336 82170166 0.000000e+00 662.0
16 TraesCS5D01G073000 chr5B 85.841 565 76 3 1077 1637 81571448 81570884 6.640000e-167 597.0
17 TraesCS5D01G073000 chr5B 76.802 1207 186 62 1034 2201 81782395 81781244 3.090000e-165 592.0
18 TraesCS5D01G073000 chr5B 83.231 650 87 10 2165 2797 81617901 81617257 8.650000e-161 577.0
19 TraesCS5D01G073000 chr5B 94.466 253 13 1 1 252 81627585 81627333 4.350000e-104 388.0
20 TraesCS5D01G073000 chr5B 89.627 241 24 1 2768 3008 81554691 81554452 4.510000e-79 305.0
21 TraesCS5D01G073000 chr5B 90.498 221 13 4 3283 3501 81553706 81553492 5.870000e-73 285.0
22 TraesCS5D01G073000 chr5B 91.626 203 13 3 519 721 81627346 81627148 9.830000e-71 278.0
23 TraesCS5D01G073000 chr5B 85.714 238 29 4 251 485 699720309 699720074 2.770000e-61 246.0
24 TraesCS5D01G073000 chr5B 84.047 257 36 5 244 497 610664845 610665099 3.590000e-60 243.0
25 TraesCS5D01G073000 chr5B 89.071 183 12 4 2995 3170 81554327 81554146 1.680000e-53 220.0
26 TraesCS5D01G073000 chr5B 73.805 565 118 21 2133 2683 82169503 82168955 2.830000e-46 196.0
27 TraesCS5D01G073000 chr5B 77.370 327 71 2 2373 2697 81781186 81780861 1.320000e-44 191.0
28 TraesCS5D01G073000 chr5B 95.833 96 4 0 3499 3594 81553445 81553350 4.800000e-34 156.0
29 TraesCS5D01G073000 chr5B 87.952 83 10 0 3240 3322 81616439 81616357 8.210000e-17 99.0
30 TraesCS5D01G073000 chr5B 75.263 190 41 3 2018 2201 903646 903457 6.390000e-13 86.1
31 TraesCS5D01G073000 chr5B 97.561 41 1 0 3189 3229 81553969 81553929 1.790000e-08 71.3
32 TraesCS5D01G073000 chr7D 92.742 248 17 1 251 497 379318031 379318278 1.230000e-94 357.0
33 TraesCS5D01G073000 chr1B 91.165 249 20 2 250 497 111060083 111059836 1.600000e-88 337.0
34 TraesCS5D01G073000 chr7B 88.306 248 25 3 253 497 7562586 7562832 9.760000e-76 294.0
35 TraesCS5D01G073000 chr4D 87.149 249 28 4 251 497 352543798 352544044 2.730000e-71 279.0
36 TraesCS5D01G073000 chr2B 86.800 250 28 4 251 497 642467872 642467625 1.270000e-69 274.0
37 TraesCS5D01G073000 chr2B 83.206 262 38 6 239 497 459477449 459477707 6.000000e-58 235.0
38 TraesCS5D01G073000 chr4B 86.235 247 28 6 253 497 94741593 94741351 2.750000e-66 263.0
39 TraesCS5D01G073000 chr3A 82.292 96 11 5 1305 1398 25038369 25038460 1.070000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G073000 chr5D 72491041 72494634 3593 False 6637.000000 6637 100.000000 1 3594 1 chr5D.!!$F3 3593
1 TraesCS5D01G073000 chr5D 72362249 72363420 1171 False 702.000000 702 77.759000 1034 2206 1 chr5D.!!$F1 1172
2 TraesCS5D01G073000 chr5D 72400912 72402065 1153 False 614.000000 614 77.019000 1035 2201 1 chr5D.!!$F2 1166
3 TraesCS5D01G073000 chr5D 6932365 6932930 565 True 403.000000 403 79.895000 1036 1595 1 chr5D.!!$R1 559
4 TraesCS5D01G073000 chr5A 64942001 64945775 3774 False 703.000000 2292 88.345250 1 3322 4 chr5A.!!$F5 3321
5 TraesCS5D01G073000 chr5A 3032954 3034111 1157 False 468.000000 468 74.788000 1065 2201 1 chr5A.!!$F3 1136
6 TraesCS5D01G073000 chr5A 2929238 2930395 1157 False 457.000000 457 74.662000 1065 2201 1 chr5A.!!$F1 1136
7 TraesCS5D01G073000 chr5A 2934653 2935823 1170 False 453.000000 453 74.692000 1034 2201 1 chr5A.!!$F2 1167
8 TraesCS5D01G073000 chr5B 82044221 82046055 1834 True 2270.000000 2270 89.003000 850 2697 1 chr5B.!!$R4 1847
9 TraesCS5D01G073000 chr5B 81561277 81562407 1130 True 1164.000000 1164 85.639000 1636 2748 1 chr5B.!!$R2 1112
10 TraesCS5D01G073000 chr5B 81624358 81627585 3227 True 820.666667 1796 92.479667 1 2170 3 chr5B.!!$R8 2169
11 TraesCS5D01G073000 chr5B 81570884 81571448 564 True 597.000000 597 85.841000 1077 1637 1 chr5B.!!$R3 560
12 TraesCS5D01G073000 chr5B 82168955 82171336 2381 True 429.000000 662 75.516000 1035 2683 2 chr5B.!!$R10 1648
13 TraesCS5D01G073000 chr5B 81780861 81782395 1534 True 391.500000 592 77.086000 1034 2697 2 chr5B.!!$R9 1663
14 TraesCS5D01G073000 chr5B 81616357 81617901 1544 True 338.000000 577 85.591500 2165 3322 2 chr5B.!!$R7 1157
15 TraesCS5D01G073000 chr5B 81553350 81554691 1341 True 207.460000 305 92.518000 2768 3594 5 chr5B.!!$R6 826

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
792 2257 0.041090 ATTTCCCCCGTTGCCATCTT 59.959 50.0 0.0 0.0 0.00 2.40 F
1998 3524 0.039618 TGGCTTGGAGTTTGGATCCC 59.960 55.0 9.9 0.0 35.86 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2519 4817 1.273886 GATCCTCTCCCGCTCATTACC 59.726 57.143 0.0 0.0 0.0 2.85 R
3044 5572 0.035739 TTGCCTCGTTGAACTACCCC 59.964 55.000 0.0 0.0 0.0 4.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 60 7.203218 GGGAACAATATCAGAAAATACCAAGC 58.797 38.462 0.00 0.00 0.00 4.01
141 143 2.949177 ACTGTGCCCTACAAACATCA 57.051 45.000 0.00 0.00 39.20 3.07
274 276 6.642659 TTTTTCGCGAATACGTAAAGTTTG 57.357 33.333 24.05 0.00 41.98 2.93
275 277 3.357770 TCGCGAATACGTAAAGTTTGC 57.642 42.857 6.20 4.46 41.98 3.68
276 278 2.730404 TCGCGAATACGTAAAGTTTGCA 59.270 40.909 6.20 4.85 41.98 4.08
277 279 3.368539 TCGCGAATACGTAAAGTTTGCAT 59.631 39.130 6.20 0.00 41.98 3.96
278 280 4.562000 TCGCGAATACGTAAAGTTTGCATA 59.438 37.500 6.20 4.75 41.98 3.14
279 281 5.232626 TCGCGAATACGTAAAGTTTGCATAT 59.767 36.000 6.20 0.00 41.98 1.78
280 282 5.555191 CGCGAATACGTAAAGTTTGCATATC 59.445 40.000 16.17 0.00 41.98 1.63
281 283 6.415702 GCGAATACGTAAAGTTTGCATATCA 58.584 36.000 12.66 0.00 41.98 2.15
282 284 7.069569 GCGAATACGTAAAGTTTGCATATCAT 58.930 34.615 12.66 0.00 41.98 2.45
283 285 7.586300 GCGAATACGTAAAGTTTGCATATCATT 59.414 33.333 12.66 0.00 41.98 2.57
284 286 8.882199 CGAATACGTAAAGTTTGCATATCATTG 58.118 33.333 0.00 0.00 34.56 2.82
285 287 8.560576 AATACGTAAAGTTTGCATATCATTGC 57.439 30.769 0.00 0.00 43.07 3.56
298 300 7.387119 GCATATCATTGCATTGATAGAAGGA 57.613 36.000 26.59 12.44 40.82 3.36
299 301 7.823665 GCATATCATTGCATTGATAGAAGGAA 58.176 34.615 26.59 11.88 40.82 3.36
300 302 8.467598 GCATATCATTGCATTGATAGAAGGAAT 58.532 33.333 26.59 13.23 40.82 3.01
304 306 9.803507 ATCATTGCATTGATAGAAGGAATAGAA 57.196 29.630 19.81 0.00 34.59 2.10
305 307 9.631257 TCATTGCATTGATAGAAGGAATAGAAA 57.369 29.630 7.19 0.00 0.00 2.52
308 310 8.400184 TGCATTGATAGAAGGAATAGAAATGG 57.600 34.615 0.00 0.00 0.00 3.16
309 311 8.000709 TGCATTGATAGAAGGAATAGAAATGGT 58.999 33.333 0.00 0.00 0.00 3.55
310 312 9.507329 GCATTGATAGAAGGAATAGAAATGGTA 57.493 33.333 0.00 0.00 0.00 3.25
328 330 5.864418 TGGTACAGATAGGGATACAACAC 57.136 43.478 0.00 0.00 39.74 3.32
329 331 5.274015 TGGTACAGATAGGGATACAACACA 58.726 41.667 0.00 0.00 39.74 3.72
330 332 5.903010 TGGTACAGATAGGGATACAACACAT 59.097 40.000 0.00 0.00 39.74 3.21
331 333 6.183360 TGGTACAGATAGGGATACAACACATG 60.183 42.308 0.00 0.00 39.74 3.21
332 334 6.041637 GGTACAGATAGGGATACAACACATGA 59.958 42.308 0.00 0.00 39.74 3.07
333 335 5.918608 ACAGATAGGGATACAACACATGAC 58.081 41.667 0.00 0.00 39.74 3.06
334 336 5.425217 ACAGATAGGGATACAACACATGACA 59.575 40.000 0.00 0.00 39.74 3.58
335 337 5.755375 CAGATAGGGATACAACACATGACAC 59.245 44.000 0.00 0.00 39.74 3.67
336 338 2.972625 AGGGATACAACACATGACACG 58.027 47.619 0.00 0.00 39.74 4.49
337 339 2.565391 AGGGATACAACACATGACACGA 59.435 45.455 0.00 0.00 39.74 4.35
338 340 3.007506 AGGGATACAACACATGACACGAA 59.992 43.478 0.00 0.00 39.74 3.85
339 341 3.124636 GGGATACAACACATGACACGAAC 59.875 47.826 0.00 0.00 39.74 3.95
340 342 3.181534 GGATACAACACATGACACGAACG 60.182 47.826 0.00 0.00 0.00 3.95
341 343 0.303493 ACAACACATGACACGAACGC 59.697 50.000 0.00 0.00 0.00 4.84
342 344 0.303191 CAACACATGACACGAACGCA 59.697 50.000 0.00 0.00 0.00 5.24
343 345 0.581529 AACACATGACACGAACGCAG 59.418 50.000 0.00 0.00 0.00 5.18
344 346 0.249280 ACACATGACACGAACGCAGA 60.249 50.000 0.00 0.00 0.00 4.26
345 347 0.161658 CACATGACACGAACGCAGAC 59.838 55.000 0.00 0.00 0.00 3.51
346 348 0.249280 ACATGACACGAACGCAGACA 60.249 50.000 0.00 0.00 0.00 3.41
347 349 1.070821 CATGACACGAACGCAGACAT 58.929 50.000 0.00 0.00 0.00 3.06
348 350 1.070821 ATGACACGAACGCAGACATG 58.929 50.000 0.00 0.00 0.00 3.21
349 351 0.249280 TGACACGAACGCAGACATGT 60.249 50.000 0.00 0.00 0.00 3.21
350 352 0.161658 GACACGAACGCAGACATGTG 59.838 55.000 1.15 0.00 42.85 3.21
359 361 2.587956 CGCAGACATGTGTGAAAATGG 58.412 47.619 25.91 4.10 32.04 3.16
360 362 2.030893 CGCAGACATGTGTGAAAATGGT 60.031 45.455 25.91 0.00 32.04 3.55
361 363 3.568538 GCAGACATGTGTGAAAATGGTC 58.431 45.455 25.91 2.39 0.00 4.02
362 364 3.612479 GCAGACATGTGTGAAAATGGTCC 60.612 47.826 25.91 1.68 0.00 4.46
363 365 2.813754 AGACATGTGTGAAAATGGTCCG 59.186 45.455 1.15 0.00 0.00 4.79
364 366 2.811431 GACATGTGTGAAAATGGTCCGA 59.189 45.455 1.15 0.00 0.00 4.55
365 367 2.813754 ACATGTGTGAAAATGGTCCGAG 59.186 45.455 0.00 0.00 0.00 4.63
366 368 1.890876 TGTGTGAAAATGGTCCGAGG 58.109 50.000 0.00 0.00 0.00 4.63
367 369 1.418264 TGTGTGAAAATGGTCCGAGGA 59.582 47.619 0.00 0.00 0.00 3.71
368 370 2.076863 GTGTGAAAATGGTCCGAGGAG 58.923 52.381 0.00 0.00 0.00 3.69
369 371 1.087501 GTGAAAATGGTCCGAGGAGC 58.912 55.000 13.90 13.90 42.37 4.70
374 376 4.208426 TGGTCCGAGGAGCAGAAA 57.792 55.556 18.85 0.00 46.01 2.52
375 377 1.975327 TGGTCCGAGGAGCAGAAAG 59.025 57.895 18.85 0.00 46.01 2.62
376 378 0.541998 TGGTCCGAGGAGCAGAAAGA 60.542 55.000 18.85 0.00 46.01 2.52
377 379 0.827368 GGTCCGAGGAGCAGAAAGAT 59.173 55.000 15.65 0.00 41.72 2.40
378 380 1.472376 GGTCCGAGGAGCAGAAAGATG 60.472 57.143 15.65 0.00 41.72 2.90
379 381 1.478510 GTCCGAGGAGCAGAAAGATGA 59.521 52.381 0.00 0.00 0.00 2.92
380 382 1.753649 TCCGAGGAGCAGAAAGATGAG 59.246 52.381 0.00 0.00 0.00 2.90
381 383 1.202510 CCGAGGAGCAGAAAGATGAGG 60.203 57.143 0.00 0.00 0.00 3.86
382 384 1.753649 CGAGGAGCAGAAAGATGAGGA 59.246 52.381 0.00 0.00 0.00 3.71
383 385 2.167281 CGAGGAGCAGAAAGATGAGGAA 59.833 50.000 0.00 0.00 0.00 3.36
384 386 3.181467 CGAGGAGCAGAAAGATGAGGAAT 60.181 47.826 0.00 0.00 0.00 3.01
385 387 4.128643 GAGGAGCAGAAAGATGAGGAATG 58.871 47.826 0.00 0.00 0.00 2.67
386 388 2.617774 GGAGCAGAAAGATGAGGAATGC 59.382 50.000 0.00 0.00 0.00 3.56
387 389 3.543665 GAGCAGAAAGATGAGGAATGCT 58.456 45.455 0.00 0.00 44.65 3.79
388 390 3.543665 AGCAGAAAGATGAGGAATGCTC 58.456 45.455 0.00 0.00 38.04 4.26
389 391 2.287373 GCAGAAAGATGAGGAATGCTCG 59.713 50.000 0.00 0.00 0.00 5.03
390 392 2.871022 CAGAAAGATGAGGAATGCTCGG 59.129 50.000 0.00 0.00 0.00 4.63
391 393 1.601430 GAAAGATGAGGAATGCTCGGC 59.399 52.381 0.00 0.00 0.00 5.54
392 394 0.179034 AAGATGAGGAATGCTCGGCC 60.179 55.000 0.00 0.00 0.00 6.13
393 395 1.053264 AGATGAGGAATGCTCGGCCT 61.053 55.000 0.00 0.00 33.97 5.19
394 396 0.883814 GATGAGGAATGCTCGGCCTG 60.884 60.000 0.00 0.00 30.70 4.85
395 397 1.340399 ATGAGGAATGCTCGGCCTGA 61.340 55.000 0.00 0.00 30.70 3.86
396 398 1.221840 GAGGAATGCTCGGCCTGAA 59.778 57.895 0.00 0.00 30.70 3.02
397 399 1.078143 AGGAATGCTCGGCCTGAAC 60.078 57.895 0.00 0.00 0.00 3.18
398 400 1.377202 GGAATGCTCGGCCTGAACA 60.377 57.895 0.00 1.89 0.00 3.18
399 401 1.372087 GGAATGCTCGGCCTGAACAG 61.372 60.000 0.00 0.00 0.00 3.16
411 413 3.199880 CCTGAACAGGGGATACATCAC 57.800 52.381 12.54 0.00 44.87 3.06
412 414 2.505407 CCTGAACAGGGGATACATCACA 59.495 50.000 12.54 0.00 44.87 3.58
413 415 3.432749 CCTGAACAGGGGATACATCACAG 60.433 52.174 12.54 0.00 44.87 3.66
414 416 2.092968 TGAACAGGGGATACATCACAGC 60.093 50.000 0.00 0.00 39.74 4.40
415 417 1.885049 ACAGGGGATACATCACAGCT 58.115 50.000 0.00 0.00 39.74 4.24
416 418 3.046283 ACAGGGGATACATCACAGCTA 57.954 47.619 0.00 0.00 39.74 3.32
417 419 3.384168 ACAGGGGATACATCACAGCTAA 58.616 45.455 0.00 0.00 39.74 3.09
418 420 3.134804 ACAGGGGATACATCACAGCTAAC 59.865 47.826 0.00 0.00 39.74 2.34
419 421 2.706190 AGGGGATACATCACAGCTAACC 59.294 50.000 0.00 0.00 39.74 2.85
420 422 2.706190 GGGGATACATCACAGCTAACCT 59.294 50.000 0.00 0.00 39.74 3.50
421 423 3.901844 GGGGATACATCACAGCTAACCTA 59.098 47.826 0.00 0.00 39.74 3.08
422 424 4.262506 GGGGATACATCACAGCTAACCTAC 60.263 50.000 0.00 0.00 39.74 3.18
423 425 4.262506 GGGATACATCACAGCTAACCTACC 60.263 50.000 0.00 0.00 39.74 3.18
424 426 4.344102 GGATACATCACAGCTAACCTACCA 59.656 45.833 0.00 0.00 0.00 3.25
425 427 5.163343 GGATACATCACAGCTAACCTACCAA 60.163 44.000 0.00 0.00 0.00 3.67
426 428 4.634012 ACATCACAGCTAACCTACCAAA 57.366 40.909 0.00 0.00 0.00 3.28
427 429 4.324267 ACATCACAGCTAACCTACCAAAC 58.676 43.478 0.00 0.00 0.00 2.93
428 430 3.412237 TCACAGCTAACCTACCAAACC 57.588 47.619 0.00 0.00 0.00 3.27
429 431 2.039348 TCACAGCTAACCTACCAAACCC 59.961 50.000 0.00 0.00 0.00 4.11
430 432 1.353358 ACAGCTAACCTACCAAACCCC 59.647 52.381 0.00 0.00 0.00 4.95
431 433 0.616891 AGCTAACCTACCAAACCCCG 59.383 55.000 0.00 0.00 0.00 5.73
432 434 0.614812 GCTAACCTACCAAACCCCGA 59.385 55.000 0.00 0.00 0.00 5.14
433 435 1.676916 GCTAACCTACCAAACCCCGAC 60.677 57.143 0.00 0.00 0.00 4.79
434 436 0.983467 TAACCTACCAAACCCCGACC 59.017 55.000 0.00 0.00 0.00 4.79
435 437 1.061324 AACCTACCAAACCCCGACCA 61.061 55.000 0.00 0.00 0.00 4.02
436 438 1.061324 ACCTACCAAACCCCGACCAA 61.061 55.000 0.00 0.00 0.00 3.67
437 439 0.322187 CCTACCAAACCCCGACCAAG 60.322 60.000 0.00 0.00 0.00 3.61
438 440 0.688487 CTACCAAACCCCGACCAAGA 59.312 55.000 0.00 0.00 0.00 3.02
439 441 0.688487 TACCAAACCCCGACCAAGAG 59.312 55.000 0.00 0.00 0.00 2.85
440 442 1.971695 CCAAACCCCGACCAAGAGC 60.972 63.158 0.00 0.00 0.00 4.09
441 443 2.032071 AAACCCCGACCAAGAGCG 59.968 61.111 0.00 0.00 0.00 5.03
442 444 3.546714 AAACCCCGACCAAGAGCGG 62.547 63.158 0.00 0.00 46.80 5.52
445 447 4.697756 CCCGACCAAGAGCGGCAA 62.698 66.667 1.45 0.00 45.93 4.52
446 448 3.423154 CCGACCAAGAGCGGCAAC 61.423 66.667 1.45 0.00 41.17 4.17
458 460 3.587933 GGCAACGCCGAACCAACA 61.588 61.111 0.00 0.00 39.62 3.33
459 461 2.409651 GCAACGCCGAACCAACAA 59.590 55.556 0.00 0.00 0.00 2.83
460 462 1.657181 GCAACGCCGAACCAACAAG 60.657 57.895 0.00 0.00 0.00 3.16
461 463 2.018544 CAACGCCGAACCAACAAGA 58.981 52.632 0.00 0.00 0.00 3.02
462 464 0.041312 CAACGCCGAACCAACAAGAG 60.041 55.000 0.00 0.00 0.00 2.85
463 465 1.782028 AACGCCGAACCAACAAGAGC 61.782 55.000 0.00 0.00 0.00 4.09
464 466 2.250939 CGCCGAACCAACAAGAGCA 61.251 57.895 0.00 0.00 0.00 4.26
465 467 1.282875 GCCGAACCAACAAGAGCAC 59.717 57.895 0.00 0.00 0.00 4.40
466 468 1.949257 CCGAACCAACAAGAGCACC 59.051 57.895 0.00 0.00 0.00 5.01
467 469 0.817634 CCGAACCAACAAGAGCACCA 60.818 55.000 0.00 0.00 0.00 4.17
468 470 1.021202 CGAACCAACAAGAGCACCAA 58.979 50.000 0.00 0.00 0.00 3.67
469 471 1.268539 CGAACCAACAAGAGCACCAAC 60.269 52.381 0.00 0.00 0.00 3.77
470 472 1.748493 GAACCAACAAGAGCACCAACA 59.252 47.619 0.00 0.00 0.00 3.33
471 473 2.071778 ACCAACAAGAGCACCAACAT 57.928 45.000 0.00 0.00 0.00 2.71
472 474 1.956477 ACCAACAAGAGCACCAACATC 59.044 47.619 0.00 0.00 0.00 3.06
473 475 2.233271 CCAACAAGAGCACCAACATCT 58.767 47.619 0.00 0.00 0.00 2.90
474 476 2.227388 CCAACAAGAGCACCAACATCTC 59.773 50.000 0.00 0.00 0.00 2.75
475 477 1.800805 ACAAGAGCACCAACATCTCG 58.199 50.000 0.00 0.00 32.42 4.04
476 478 1.344438 ACAAGAGCACCAACATCTCGA 59.656 47.619 0.00 0.00 32.42 4.04
477 479 1.728971 CAAGAGCACCAACATCTCGAC 59.271 52.381 0.00 0.00 32.42 4.20
478 480 0.969149 AGAGCACCAACATCTCGACA 59.031 50.000 0.00 0.00 32.42 4.35
479 481 1.344438 AGAGCACCAACATCTCGACAA 59.656 47.619 0.00 0.00 32.42 3.18
480 482 1.461127 GAGCACCAACATCTCGACAAC 59.539 52.381 0.00 0.00 0.00 3.32
481 483 0.517316 GCACCAACATCTCGACAACC 59.483 55.000 0.00 0.00 0.00 3.77
482 484 1.877637 CACCAACATCTCGACAACCA 58.122 50.000 0.00 0.00 0.00 3.67
483 485 2.217750 CACCAACATCTCGACAACCAA 58.782 47.619 0.00 0.00 0.00 3.67
484 486 2.616376 CACCAACATCTCGACAACCAAA 59.384 45.455 0.00 0.00 0.00 3.28
485 487 3.066064 CACCAACATCTCGACAACCAAAA 59.934 43.478 0.00 0.00 0.00 2.44
486 488 3.066203 ACCAACATCTCGACAACCAAAAC 59.934 43.478 0.00 0.00 0.00 2.43
487 489 3.550030 CCAACATCTCGACAACCAAAACC 60.550 47.826 0.00 0.00 0.00 3.27
488 490 1.871039 ACATCTCGACAACCAAAACCG 59.129 47.619 0.00 0.00 0.00 4.44
489 491 1.196808 CATCTCGACAACCAAAACCGG 59.803 52.381 0.00 0.00 0.00 5.28
490 492 0.533308 TCTCGACAACCAAAACCGGG 60.533 55.000 6.32 0.00 0.00 5.73
491 493 1.512156 CTCGACAACCAAAACCGGGG 61.512 60.000 6.32 0.00 0.00 5.73
492 494 1.526455 CGACAACCAAAACCGGGGA 60.526 57.895 6.32 0.00 0.00 4.81
493 495 1.788067 CGACAACCAAAACCGGGGAC 61.788 60.000 6.32 0.00 0.00 4.46
494 496 0.752376 GACAACCAAAACCGGGGACA 60.752 55.000 6.32 0.00 0.00 4.02
495 497 1.038681 ACAACCAAAACCGGGGACAC 61.039 55.000 6.32 0.00 0.00 3.67
496 498 1.456145 AACCAAAACCGGGGACACC 60.456 57.895 6.32 0.00 0.00 4.16
497 499 2.196229 CCAAAACCGGGGACACCA 59.804 61.111 6.32 0.00 40.22 4.17
498 500 1.455959 CCAAAACCGGGGACACCAA 60.456 57.895 6.32 0.00 40.22 3.67
499 501 1.043673 CCAAAACCGGGGACACCAAA 61.044 55.000 6.32 0.00 40.22 3.28
500 502 0.103390 CAAAACCGGGGACACCAAAC 59.897 55.000 6.32 0.00 40.22 2.93
501 503 1.044231 AAAACCGGGGACACCAAACC 61.044 55.000 6.32 0.00 40.22 3.27
502 504 2.932569 AAACCGGGGACACCAAACCC 62.933 60.000 6.32 0.00 44.89 4.11
505 507 3.572222 GGGGACACCAAACCCGGA 61.572 66.667 0.73 0.00 46.42 5.14
506 508 2.281970 GGGACACCAAACCCGGAC 60.282 66.667 0.73 0.00 36.56 4.79
507 509 2.281970 GGACACCAAACCCGGACC 60.282 66.667 0.73 0.00 0.00 4.46
508 510 2.511900 GACACCAAACCCGGACCA 59.488 61.111 0.73 0.00 0.00 4.02
509 511 1.152922 GACACCAAACCCGGACCAA 60.153 57.895 0.73 0.00 0.00 3.67
510 512 1.152839 ACACCAAACCCGGACCAAG 60.153 57.895 0.73 0.00 0.00 3.61
511 513 1.149627 CACCAAACCCGGACCAAGA 59.850 57.895 0.73 0.00 0.00 3.02
512 514 0.889186 CACCAAACCCGGACCAAGAG 60.889 60.000 0.73 0.00 0.00 2.85
513 515 1.971695 CCAAACCCGGACCAAGAGC 60.972 63.158 0.73 0.00 0.00 4.09
514 516 2.032071 AAACCCGGACCAAGAGCG 59.968 61.111 0.73 0.00 0.00 5.03
515 517 3.546714 AAACCCGGACCAAGAGCGG 62.547 63.158 0.73 0.00 0.00 5.52
518 520 4.697756 CCGGACCAAGAGCGGCAA 62.698 66.667 0.00 0.00 0.00 4.52
519 521 2.436646 CGGACCAAGAGCGGCAAT 60.437 61.111 1.45 0.00 0.00 3.56
520 522 2.753966 CGGACCAAGAGCGGCAATG 61.754 63.158 1.45 0.00 0.00 2.82
596 598 7.033185 GCCACGAAAATAAAGACAAATATGGT 58.967 34.615 0.00 0.00 0.00 3.55
751 1765 5.086888 GAAATTATTTCGTAACCGGCGAT 57.913 39.130 9.30 0.00 38.21 4.58
753 1767 2.582728 TATTTCGTAACCGGCGATGT 57.417 45.000 9.30 0.00 38.21 3.06
754 1768 1.283736 ATTTCGTAACCGGCGATGTC 58.716 50.000 9.30 0.00 38.21 3.06
756 1770 2.198906 TTCGTAACCGGCGATGTCGT 62.199 55.000 9.30 0.00 42.22 4.34
758 1772 1.705727 GTAACCGGCGATGTCGTTG 59.294 57.895 9.30 0.00 42.22 4.10
762 1776 2.126071 CGGCGATGTCGTTGTCCT 60.126 61.111 0.00 0.00 42.22 3.85
783 2248 2.360726 GTTGCCGATTTCCCCCGT 60.361 61.111 0.00 0.00 0.00 5.28
785 2250 1.974343 TTGCCGATTTCCCCCGTTG 60.974 57.895 0.00 0.00 0.00 4.10
786 2251 3.822192 GCCGATTTCCCCCGTTGC 61.822 66.667 0.00 0.00 0.00 4.17
787 2252 3.138128 CCGATTTCCCCCGTTGCC 61.138 66.667 0.00 0.00 0.00 4.52
788 2253 2.360600 CGATTTCCCCCGTTGCCA 60.361 61.111 0.00 0.00 0.00 4.92
789 2254 1.752694 CGATTTCCCCCGTTGCCAT 60.753 57.895 0.00 0.00 0.00 4.40
790 2255 1.724582 CGATTTCCCCCGTTGCCATC 61.725 60.000 0.00 0.00 0.00 3.51
791 2256 0.395724 GATTTCCCCCGTTGCCATCT 60.396 55.000 0.00 0.00 0.00 2.90
792 2257 0.041090 ATTTCCCCCGTTGCCATCTT 59.959 50.000 0.00 0.00 0.00 2.40
793 2258 0.897863 TTTCCCCCGTTGCCATCTTG 60.898 55.000 0.00 0.00 0.00 3.02
794 2259 1.784301 TTCCCCCGTTGCCATCTTGA 61.784 55.000 0.00 0.00 0.00 3.02
795 2260 1.304052 CCCCCGTTGCCATCTTGAA 60.304 57.895 0.00 0.00 0.00 2.69
796 2261 1.315257 CCCCCGTTGCCATCTTGAAG 61.315 60.000 0.00 0.00 0.00 3.02
797 2262 1.508088 CCCGTTGCCATCTTGAAGC 59.492 57.895 0.00 0.00 0.00 3.86
798 2263 0.962356 CCCGTTGCCATCTTGAAGCT 60.962 55.000 0.00 0.00 0.00 3.74
799 2264 0.169672 CCGTTGCCATCTTGAAGCTG 59.830 55.000 0.00 0.00 0.00 4.24
820 2285 2.374184 CACTTCACCTGAAAACCACCA 58.626 47.619 0.00 0.00 33.07 4.17
822 2287 3.023832 ACTTCACCTGAAAACCACCAAG 58.976 45.455 0.00 0.00 33.07 3.61
823 2288 1.398692 TCACCTGAAAACCACCAAGC 58.601 50.000 0.00 0.00 0.00 4.01
1020 2491 3.760035 TGCTCGCGGAAGTCCTCC 61.760 66.667 6.13 0.00 41.40 4.30
1305 2779 0.957395 AAGACTGCGCTGATTGGTGG 60.957 55.000 21.92 0.00 0.00 4.61
1418 2895 4.503314 GCGCCCTGCCAAAGATGC 62.503 66.667 0.00 0.00 37.76 3.91
1425 2905 0.896940 CTGCCAAAGATGCCACAGGT 60.897 55.000 0.00 0.00 0.00 4.00
1434 2917 0.394938 ATGCCACAGGTAACGTGTCA 59.605 50.000 0.00 0.00 46.39 3.58
1450 2933 0.464036 GTCATACCGTGGGCATCTGA 59.536 55.000 0.00 0.00 0.00 3.27
1603 3099 7.981789 TGTATGTATTCTCATCAAAGTCTGGTC 59.018 37.037 0.00 0.00 0.00 4.02
1617 3113 0.685097 CTGGTCGTTGGGAGGAGAAA 59.315 55.000 0.00 0.00 0.00 2.52
1638 3134 1.966845 ATTTCTTCCGAGAAGGGGGA 58.033 50.000 11.99 0.00 42.55 4.81
1646 3142 0.684805 CGAGAAGGGGGAGCTACAGT 60.685 60.000 0.00 0.00 0.00 3.55
1898 3421 0.530744 TGATACCAGAGCACACGACC 59.469 55.000 0.00 0.00 0.00 4.79
1956 3482 5.127031 GGGTGTACTTTGTGGCATTTGATAT 59.873 40.000 0.00 0.00 0.00 1.63
1998 3524 0.039618 TGGCTTGGAGTTTGGATCCC 59.960 55.000 9.90 0.00 35.86 3.85
2210 3745 7.064609 GGAACTCTGACGATGATATTGAAAACA 59.935 37.037 0.00 0.00 0.00 2.83
2226 4503 5.656480 TGAAAACAAAGACTTGGTTAAGCC 58.344 37.500 8.41 0.19 41.76 4.35
2233 4510 3.898482 AGACTTGGTTAAGCCTTGTTGT 58.102 40.909 1.51 0.00 37.43 3.32
2245 4522 6.715347 AAGCCTTGTTGTTTAGAAGACAAT 57.285 33.333 0.00 0.00 39.03 2.71
2282 4559 8.552083 AGTTGAAAATAAATTGGATTGGAAGC 57.448 30.769 0.00 0.00 0.00 3.86
2285 4562 4.670896 AATAAATTGGATTGGAAGCCCG 57.329 40.909 0.00 0.00 32.20 6.13
2313 4590 6.471976 TCATAATGCTCTTAATGATGACGC 57.528 37.500 0.00 0.00 0.00 5.19
2349 4626 2.672961 TACTGGGATGAAGAGCGTTG 57.327 50.000 0.00 0.00 0.00 4.10
2366 4661 6.368243 AGAGCGTTGTGATGATTCATATGATC 59.632 38.462 6.17 7.15 33.56 2.92
2412 4707 9.832445 GTTTCACCCATATAAAGAGATTGTCTA 57.168 33.333 0.00 0.00 32.65 2.59
2484 4782 9.837525 CTCAAAGATTGAAGAATTAGGAAACAG 57.162 33.333 0.00 0.00 39.58 3.16
2492 4790 7.338710 TGAAGAATTAGGAAACAGATACCCAG 58.661 38.462 0.00 0.00 0.00 4.45
2501 4799 6.325286 AGGAAACAGATACCCAGAAGAGTATC 59.675 42.308 2.63 2.63 43.38 2.24
2633 4931 8.462589 TCACATATGAGCCTATTTTATTTGCA 57.537 30.769 10.38 0.00 0.00 4.08
2634 4932 8.911965 TCACATATGAGCCTATTTTATTTGCAA 58.088 29.630 10.38 0.00 0.00 4.08
2635 4933 9.701098 CACATATGAGCCTATTTTATTTGCAAT 57.299 29.630 10.38 0.00 0.00 3.56
2743 5057 9.974980 TTGAAAAGGAGGTTACAATTATGTTTC 57.025 29.630 0.00 0.00 41.05 2.78
2832 5202 2.436824 GAGGGAGACGCCAAAGGC 60.437 66.667 0.00 0.00 46.75 4.35
2846 5216 1.021390 AAAGGCGCGATGTCTTCCAG 61.021 55.000 12.10 0.00 43.17 3.86
2854 5224 2.159599 GCGATGTCTTCCAGCTTCAAAG 60.160 50.000 0.00 0.00 0.00 2.77
2856 5226 3.937706 CGATGTCTTCCAGCTTCAAAGAT 59.062 43.478 5.70 0.00 32.11 2.40
2870 5240 8.031864 CAGCTTCAAAGATAGTTTACAGAGAGA 58.968 37.037 0.00 0.00 0.00 3.10
2905 5275 4.138290 TGTAGAGTGATACAGGAGCTAGC 58.862 47.826 6.62 6.62 32.03 3.42
2926 5296 7.201714 GCTAGCTTCTTCTGTTGAATCATGAAT 60.202 37.037 7.70 0.00 0.00 2.57
2928 5298 8.571461 AGCTTCTTCTGTTGAATCATGAATTA 57.429 30.769 0.00 0.00 0.00 1.40
2936 5306 9.076781 TCTGTTGAATCATGAATTACCAGAAAA 57.923 29.630 0.00 0.00 29.46 2.29
2986 5376 7.495934 GCTCTCTTGGCTATAAACAATTGTCTA 59.504 37.037 12.39 2.14 0.00 2.59
3001 5391 7.094631 ACAATTGTCTAGATACGCAAAGTGTA 58.905 34.615 4.92 0.00 32.98 2.90
3013 5541 3.181465 CGCAAAGTGTATCCCCTGTAGAT 60.181 47.826 0.00 0.00 0.00 1.98
3045 5573 6.834168 TTTTTACCTCTGCAGGAATTTAGG 57.166 37.500 15.13 14.36 43.65 2.69
3048 5576 1.566231 CCTCTGCAGGAATTTAGGGGT 59.434 52.381 15.13 0.00 43.65 4.95
3069 5607 3.188159 AGTTCAACGAGGCAACAAGTA 57.812 42.857 0.00 0.00 41.41 2.24
3070 5608 3.537580 AGTTCAACGAGGCAACAAGTAA 58.462 40.909 0.00 0.00 41.41 2.24
3071 5609 3.560068 AGTTCAACGAGGCAACAAGTAAG 59.440 43.478 0.00 0.00 41.41 2.34
3072 5610 3.188159 TCAACGAGGCAACAAGTAAGT 57.812 42.857 0.00 0.00 41.41 2.24
3131 5669 4.688413 GCAGTAGCTACATGGATTCTAAGC 59.312 45.833 25.28 7.82 37.91 3.09
3147 5685 7.939588 GGATTCTAAGCCAATGTTATACTTCCT 59.060 37.037 0.00 0.00 33.79 3.36
3164 5702 6.749923 ACTTCCTGCATCTGTATCTTTTTC 57.250 37.500 0.00 0.00 0.00 2.29
3166 5704 5.441718 TCCTGCATCTGTATCTTTTTCCT 57.558 39.130 0.00 0.00 0.00 3.36
3171 5871 6.051717 TGCATCTGTATCTTTTTCCTCTAGC 58.948 40.000 0.00 0.00 0.00 3.42
3176 5876 8.362464 TCTGTATCTTTTTCCTCTAGCACTTA 57.638 34.615 0.00 0.00 0.00 2.24
3184 5884 4.326600 TCCTCTAGCACTTAGGGTAACA 57.673 45.455 0.00 0.00 39.74 2.41
3225 5926 0.930726 TGTGGGTTTTGGGTCCTTCT 59.069 50.000 0.00 0.00 0.00 2.85
3231 5932 0.825840 TTTTGGGTCCTTCTTGGCCG 60.826 55.000 0.00 0.00 34.27 6.13
3238 6134 0.400213 TCCTTCTTGGCCGACACATT 59.600 50.000 0.00 0.00 35.26 2.71
3283 6179 6.748333 TGTTGATCATCCAAATTCTGAGAC 57.252 37.500 0.00 0.00 0.00 3.36
3284 6180 6.240145 TGTTGATCATCCAAATTCTGAGACA 58.760 36.000 0.00 0.00 0.00 3.41
3288 6184 6.766467 TGATCATCCAAATTCTGAGACATGAG 59.234 38.462 0.00 0.00 0.00 2.90
3371 6267 3.562176 GGGCTGTAGGGATATTGGATTGG 60.562 52.174 0.00 0.00 0.00 3.16
3389 6285 6.064717 GGATTGGTTAGAAATCTATGCCAGT 58.935 40.000 11.51 9.94 36.20 4.00
3400 6296 4.422073 TCTATGCCAGTAACATTGGAGG 57.578 45.455 0.00 0.00 37.96 4.30
3405 6301 3.014623 GCCAGTAACATTGGAGGGTAAC 58.985 50.000 0.00 0.00 37.96 2.50
3406 6302 3.267483 CCAGTAACATTGGAGGGTAACG 58.733 50.000 0.00 0.00 37.96 3.18
3424 6320 6.406177 GGGTAACGTCTTTCTGGATATGTGTA 60.406 42.308 0.00 0.00 37.60 2.90
3426 6322 8.355169 GGTAACGTCTTTCTGGATATGTGTATA 58.645 37.037 0.00 0.00 0.00 1.47
3455 6351 5.075493 ACAAAAGAATGATTCTGGCAGTCT 58.925 37.500 15.27 5.80 41.85 3.24
3479 6377 5.172934 GGAAACAATCATGCATGTGTGAAT 58.827 37.500 27.68 19.09 0.00 2.57
3495 6393 5.302568 TGTGTGAATCAAGAGGCAAGAAAAT 59.697 36.000 0.00 0.00 0.00 1.82
3529 6476 8.594881 AGTGTGCAGTATATACATTCTTAAGC 57.405 34.615 15.18 6.25 0.00 3.09
3546 6493 7.875316 TCTTAAGCTAGAACATAATCATCGC 57.125 36.000 0.00 0.00 0.00 4.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
118 120 6.247229 TGATGTTTGTAGGGCACAGTATAT 57.753 37.500 0.00 0.00 38.72 0.86
125 127 2.790433 TCCTTGATGTTTGTAGGGCAC 58.210 47.619 0.00 0.00 0.00 5.01
129 131 6.207417 ACTGTGAATTCCTTGATGTTTGTAGG 59.793 38.462 2.27 0.00 0.00 3.18
141 143 7.170998 CGAGTTTAGTAACACTGTGAATTCCTT 59.829 37.037 15.86 0.00 36.70 3.36
251 253 5.113826 GCAAACTTTACGTATTCGCGAAAAA 59.886 36.000 27.23 19.02 41.18 1.94
252 254 4.608058 GCAAACTTTACGTATTCGCGAAAA 59.392 37.500 27.23 12.39 41.18 2.29
253 255 4.143116 GCAAACTTTACGTATTCGCGAAA 58.857 39.130 27.23 12.42 41.18 3.46
254 256 3.183976 TGCAAACTTTACGTATTCGCGAA 59.816 39.130 25.66 25.66 41.18 4.70
255 257 2.730404 TGCAAACTTTACGTATTCGCGA 59.270 40.909 3.71 3.71 41.18 5.87
256 258 3.092995 TGCAAACTTTACGTATTCGCG 57.907 42.857 0.00 0.00 41.18 5.87
257 259 6.415702 TGATATGCAAACTTTACGTATTCGC 58.584 36.000 0.00 0.00 41.18 4.70
258 260 8.882199 CAATGATATGCAAACTTTACGTATTCG 58.118 33.333 0.00 0.00 43.34 3.34
259 261 8.682016 GCAATGATATGCAAACTTTACGTATTC 58.318 33.333 0.00 0.00 45.70 1.75
260 262 8.560576 GCAATGATATGCAAACTTTACGTATT 57.439 30.769 0.00 0.00 45.70 1.89
274 276 7.387119 TCCTTCTATCAATGCAATGATATGC 57.613 36.000 21.75 0.00 46.58 3.14
278 280 9.803507 TTCTATTCCTTCTATCAATGCAATGAT 57.196 29.630 20.55 20.55 42.52 2.45
279 281 9.631257 TTTCTATTCCTTCTATCAATGCAATGA 57.369 29.630 6.97 6.97 0.00 2.57
282 284 8.853126 CCATTTCTATTCCTTCTATCAATGCAA 58.147 33.333 0.00 0.00 0.00 4.08
283 285 8.000709 ACCATTTCTATTCCTTCTATCAATGCA 58.999 33.333 0.00 0.00 0.00 3.96
284 286 8.401490 ACCATTTCTATTCCTTCTATCAATGC 57.599 34.615 0.00 0.00 0.00 3.56
288 290 9.434275 TCTGTACCATTTCTATTCCTTCTATCA 57.566 33.333 0.00 0.00 0.00 2.15
292 294 8.875168 CCTATCTGTACCATTTCTATTCCTTCT 58.125 37.037 0.00 0.00 0.00 2.85
293 295 8.097662 CCCTATCTGTACCATTTCTATTCCTTC 58.902 40.741 0.00 0.00 0.00 3.46
294 296 7.794683 TCCCTATCTGTACCATTTCTATTCCTT 59.205 37.037 0.00 0.00 0.00 3.36
295 297 7.313731 TCCCTATCTGTACCATTTCTATTCCT 58.686 38.462 0.00 0.00 0.00 3.36
296 298 7.554959 TCCCTATCTGTACCATTTCTATTCC 57.445 40.000 0.00 0.00 0.00 3.01
298 300 9.615660 TGTATCCCTATCTGTACCATTTCTATT 57.384 33.333 0.00 0.00 0.00 1.73
299 301 9.615660 TTGTATCCCTATCTGTACCATTTCTAT 57.384 33.333 0.00 0.00 0.00 1.98
300 302 8.867097 GTTGTATCCCTATCTGTACCATTTCTA 58.133 37.037 0.00 0.00 0.00 2.10
301 303 7.347222 TGTTGTATCCCTATCTGTACCATTTCT 59.653 37.037 0.00 0.00 0.00 2.52
302 304 7.441458 GTGTTGTATCCCTATCTGTACCATTTC 59.559 40.741 0.00 0.00 0.00 2.17
303 305 7.092623 TGTGTTGTATCCCTATCTGTACCATTT 60.093 37.037 0.00 0.00 0.00 2.32
304 306 6.385759 TGTGTTGTATCCCTATCTGTACCATT 59.614 38.462 0.00 0.00 0.00 3.16
305 307 5.903010 TGTGTTGTATCCCTATCTGTACCAT 59.097 40.000 0.00 0.00 0.00 3.55
306 308 5.274015 TGTGTTGTATCCCTATCTGTACCA 58.726 41.667 0.00 0.00 0.00 3.25
307 309 5.864418 TGTGTTGTATCCCTATCTGTACC 57.136 43.478 0.00 0.00 0.00 3.34
308 310 6.924060 GTCATGTGTTGTATCCCTATCTGTAC 59.076 42.308 0.00 0.00 0.00 2.90
309 311 6.609616 TGTCATGTGTTGTATCCCTATCTGTA 59.390 38.462 0.00 0.00 0.00 2.74
310 312 5.425217 TGTCATGTGTTGTATCCCTATCTGT 59.575 40.000 0.00 0.00 0.00 3.41
311 313 5.755375 GTGTCATGTGTTGTATCCCTATCTG 59.245 44.000 0.00 0.00 0.00 2.90
312 314 5.451937 CGTGTCATGTGTTGTATCCCTATCT 60.452 44.000 0.00 0.00 0.00 1.98
313 315 4.745125 CGTGTCATGTGTTGTATCCCTATC 59.255 45.833 0.00 0.00 0.00 2.08
314 316 4.404394 TCGTGTCATGTGTTGTATCCCTAT 59.596 41.667 0.00 0.00 0.00 2.57
315 317 3.764972 TCGTGTCATGTGTTGTATCCCTA 59.235 43.478 0.00 0.00 0.00 3.53
316 318 2.565391 TCGTGTCATGTGTTGTATCCCT 59.435 45.455 0.00 0.00 0.00 4.20
317 319 2.967362 TCGTGTCATGTGTTGTATCCC 58.033 47.619 0.00 0.00 0.00 3.85
318 320 3.181534 CGTTCGTGTCATGTGTTGTATCC 60.182 47.826 0.00 0.00 0.00 2.59
319 321 3.720920 GCGTTCGTGTCATGTGTTGTATC 60.721 47.826 0.00 0.00 0.00 2.24
320 322 2.156891 GCGTTCGTGTCATGTGTTGTAT 59.843 45.455 0.00 0.00 0.00 2.29
321 323 1.523515 GCGTTCGTGTCATGTGTTGTA 59.476 47.619 0.00 0.00 0.00 2.41
322 324 0.303493 GCGTTCGTGTCATGTGTTGT 59.697 50.000 0.00 0.00 0.00 3.32
323 325 0.303191 TGCGTTCGTGTCATGTGTTG 59.697 50.000 0.00 0.00 0.00 3.33
324 326 0.581529 CTGCGTTCGTGTCATGTGTT 59.418 50.000 0.00 0.00 0.00 3.32
325 327 0.249280 TCTGCGTTCGTGTCATGTGT 60.249 50.000 0.00 0.00 0.00 3.72
326 328 0.161658 GTCTGCGTTCGTGTCATGTG 59.838 55.000 0.00 0.00 0.00 3.21
327 329 0.249280 TGTCTGCGTTCGTGTCATGT 60.249 50.000 0.00 0.00 0.00 3.21
328 330 1.070821 ATGTCTGCGTTCGTGTCATG 58.929 50.000 0.00 0.00 0.00 3.07
329 331 1.070821 CATGTCTGCGTTCGTGTCAT 58.929 50.000 0.00 0.00 0.00 3.06
330 332 0.249280 ACATGTCTGCGTTCGTGTCA 60.249 50.000 0.00 0.00 0.00 3.58
331 333 0.161658 CACATGTCTGCGTTCGTGTC 59.838 55.000 0.00 0.00 32.43 3.67
332 334 0.529773 ACACATGTCTGCGTTCGTGT 60.530 50.000 0.00 0.00 34.66 4.49
333 335 0.111134 CACACATGTCTGCGTTCGTG 60.111 55.000 0.00 0.00 0.00 4.35
334 336 0.249280 TCACACATGTCTGCGTTCGT 60.249 50.000 0.00 0.00 0.00 3.85
335 337 0.858583 TTCACACATGTCTGCGTTCG 59.141 50.000 0.00 0.00 0.00 3.95
336 338 3.332761 TTTTCACACATGTCTGCGTTC 57.667 42.857 0.00 0.00 0.00 3.95
337 339 3.550639 CCATTTTCACACATGTCTGCGTT 60.551 43.478 0.00 0.00 0.00 4.84
338 340 2.030893 CCATTTTCACACATGTCTGCGT 60.031 45.455 0.00 0.00 0.00 5.24
339 341 2.030893 ACCATTTTCACACATGTCTGCG 60.031 45.455 0.00 0.00 0.00 5.18
340 342 3.568538 GACCATTTTCACACATGTCTGC 58.431 45.455 0.00 0.00 0.00 4.26
341 343 3.365264 CGGACCATTTTCACACATGTCTG 60.365 47.826 0.00 0.00 0.00 3.51
342 344 2.813754 CGGACCATTTTCACACATGTCT 59.186 45.455 0.00 0.00 0.00 3.41
343 345 2.811431 TCGGACCATTTTCACACATGTC 59.189 45.455 0.00 0.00 0.00 3.06
344 346 2.813754 CTCGGACCATTTTCACACATGT 59.186 45.455 0.00 0.00 0.00 3.21
345 347 2.162208 CCTCGGACCATTTTCACACATG 59.838 50.000 0.00 0.00 0.00 3.21
346 348 2.039746 TCCTCGGACCATTTTCACACAT 59.960 45.455 0.00 0.00 0.00 3.21
347 349 1.418264 TCCTCGGACCATTTTCACACA 59.582 47.619 0.00 0.00 0.00 3.72
348 350 2.076863 CTCCTCGGACCATTTTCACAC 58.923 52.381 0.00 0.00 0.00 3.82
349 351 1.610624 GCTCCTCGGACCATTTTCACA 60.611 52.381 0.00 0.00 0.00 3.58
350 352 1.087501 GCTCCTCGGACCATTTTCAC 58.912 55.000 0.00 0.00 0.00 3.18
351 353 0.690192 TGCTCCTCGGACCATTTTCA 59.310 50.000 0.00 0.00 0.00 2.69
352 354 1.066143 TCTGCTCCTCGGACCATTTTC 60.066 52.381 0.00 0.00 0.00 2.29
353 355 0.984230 TCTGCTCCTCGGACCATTTT 59.016 50.000 0.00 0.00 0.00 1.82
354 356 0.984230 TTCTGCTCCTCGGACCATTT 59.016 50.000 0.00 0.00 0.00 2.32
355 357 0.984230 TTTCTGCTCCTCGGACCATT 59.016 50.000 0.00 0.00 0.00 3.16
356 358 0.539051 CTTTCTGCTCCTCGGACCAT 59.461 55.000 0.00 0.00 0.00 3.55
357 359 0.541998 TCTTTCTGCTCCTCGGACCA 60.542 55.000 0.00 0.00 0.00 4.02
358 360 0.827368 ATCTTTCTGCTCCTCGGACC 59.173 55.000 0.00 0.00 0.00 4.46
359 361 1.478510 TCATCTTTCTGCTCCTCGGAC 59.521 52.381 0.00 0.00 0.00 4.79
360 362 1.753649 CTCATCTTTCTGCTCCTCGGA 59.246 52.381 0.00 0.00 0.00 4.55
361 363 1.202510 CCTCATCTTTCTGCTCCTCGG 60.203 57.143 0.00 0.00 0.00 4.63
362 364 1.753649 TCCTCATCTTTCTGCTCCTCG 59.246 52.381 0.00 0.00 0.00 4.63
363 365 3.902881 TTCCTCATCTTTCTGCTCCTC 57.097 47.619 0.00 0.00 0.00 3.71
364 366 3.684981 GCATTCCTCATCTTTCTGCTCCT 60.685 47.826 0.00 0.00 0.00 3.69
365 367 2.617774 GCATTCCTCATCTTTCTGCTCC 59.382 50.000 0.00 0.00 0.00 4.70
366 368 3.543665 AGCATTCCTCATCTTTCTGCTC 58.456 45.455 0.00 0.00 33.47 4.26
367 369 3.543665 GAGCATTCCTCATCTTTCTGCT 58.456 45.455 0.00 0.00 40.89 4.24
368 370 2.287373 CGAGCATTCCTCATCTTTCTGC 59.713 50.000 0.00 0.00 40.78 4.26
369 371 2.871022 CCGAGCATTCCTCATCTTTCTG 59.129 50.000 0.00 0.00 40.78 3.02
370 372 2.744494 GCCGAGCATTCCTCATCTTTCT 60.744 50.000 0.00 0.00 40.78 2.52
371 373 1.601430 GCCGAGCATTCCTCATCTTTC 59.399 52.381 0.00 0.00 40.78 2.62
372 374 1.673168 GCCGAGCATTCCTCATCTTT 58.327 50.000 0.00 0.00 40.78 2.52
373 375 0.179034 GGCCGAGCATTCCTCATCTT 60.179 55.000 0.00 0.00 40.78 2.40
374 376 1.053264 AGGCCGAGCATTCCTCATCT 61.053 55.000 0.00 0.00 40.78 2.90
375 377 0.883814 CAGGCCGAGCATTCCTCATC 60.884 60.000 0.00 0.00 40.78 2.92
376 378 1.147824 CAGGCCGAGCATTCCTCAT 59.852 57.895 0.00 0.00 40.78 2.90
377 379 1.552799 TTCAGGCCGAGCATTCCTCA 61.553 55.000 0.00 0.00 40.78 3.86
378 380 1.092345 GTTCAGGCCGAGCATTCCTC 61.092 60.000 0.00 0.00 37.22 3.71
379 381 1.078143 GTTCAGGCCGAGCATTCCT 60.078 57.895 0.00 0.00 0.00 3.36
380 382 1.372087 CTGTTCAGGCCGAGCATTCC 61.372 60.000 12.79 0.00 33.97 3.01
381 383 1.372087 CCTGTTCAGGCCGAGCATTC 61.372 60.000 12.79 0.00 33.97 2.67
382 384 1.377725 CCTGTTCAGGCCGAGCATT 60.378 57.895 12.79 0.00 33.97 3.56
383 385 2.270205 CCTGTTCAGGCCGAGCAT 59.730 61.111 12.79 0.00 33.97 3.79
384 386 4.020617 CCCTGTTCAGGCCGAGCA 62.021 66.667 12.88 12.06 33.31 4.26
385 387 4.785453 CCCCTGTTCAGGCCGAGC 62.785 72.222 12.88 0.31 0.00 5.03
386 388 1.048724 TATCCCCTGTTCAGGCCGAG 61.049 60.000 12.88 0.00 0.00 4.63
387 389 1.002403 TATCCCCTGTTCAGGCCGA 59.998 57.895 12.88 10.43 0.00 5.54
388 390 1.146263 GTATCCCCTGTTCAGGCCG 59.854 63.158 12.88 5.74 0.00 6.13
389 391 0.846693 ATGTATCCCCTGTTCAGGCC 59.153 55.000 12.88 0.00 0.00 5.19
390 392 1.490490 TGATGTATCCCCTGTTCAGGC 59.510 52.381 12.88 0.64 0.00 4.85
391 393 2.505407 TGTGATGTATCCCCTGTTCAGG 59.495 50.000 11.52 11.52 0.00 3.86
392 394 3.801698 CTGTGATGTATCCCCTGTTCAG 58.198 50.000 0.00 0.00 0.00 3.02
393 395 2.092968 GCTGTGATGTATCCCCTGTTCA 60.093 50.000 0.00 0.00 0.00 3.18
394 396 2.171448 AGCTGTGATGTATCCCCTGTTC 59.829 50.000 0.00 0.00 0.00 3.18
395 397 2.200081 AGCTGTGATGTATCCCCTGTT 58.800 47.619 0.00 0.00 0.00 3.16
396 398 1.885049 AGCTGTGATGTATCCCCTGT 58.115 50.000 0.00 0.00 0.00 4.00
397 399 3.495100 GGTTAGCTGTGATGTATCCCCTG 60.495 52.174 0.00 0.00 0.00 4.45
398 400 2.706190 GGTTAGCTGTGATGTATCCCCT 59.294 50.000 0.00 0.00 0.00 4.79
399 401 2.706190 AGGTTAGCTGTGATGTATCCCC 59.294 50.000 0.00 0.00 0.00 4.81
400 402 4.262506 GGTAGGTTAGCTGTGATGTATCCC 60.263 50.000 0.00 0.00 0.00 3.85
401 403 4.344102 TGGTAGGTTAGCTGTGATGTATCC 59.656 45.833 0.00 0.00 0.00 2.59
402 404 5.531122 TGGTAGGTTAGCTGTGATGTATC 57.469 43.478 0.00 0.00 0.00 2.24
403 405 5.950544 TTGGTAGGTTAGCTGTGATGTAT 57.049 39.130 0.00 0.00 0.00 2.29
404 406 5.484715 GTTTGGTAGGTTAGCTGTGATGTA 58.515 41.667 0.00 0.00 0.00 2.29
405 407 4.324267 GTTTGGTAGGTTAGCTGTGATGT 58.676 43.478 0.00 0.00 0.00 3.06
406 408 3.689649 GGTTTGGTAGGTTAGCTGTGATG 59.310 47.826 0.00 0.00 0.00 3.07
407 409 3.308188 GGGTTTGGTAGGTTAGCTGTGAT 60.308 47.826 0.00 0.00 0.00 3.06
408 410 2.039348 GGGTTTGGTAGGTTAGCTGTGA 59.961 50.000 0.00 0.00 0.00 3.58
409 411 2.433436 GGGTTTGGTAGGTTAGCTGTG 58.567 52.381 0.00 0.00 0.00 3.66
410 412 1.353358 GGGGTTTGGTAGGTTAGCTGT 59.647 52.381 0.00 0.00 0.00 4.40
411 413 1.677820 CGGGGTTTGGTAGGTTAGCTG 60.678 57.143 0.00 0.00 0.00 4.24
412 414 0.616891 CGGGGTTTGGTAGGTTAGCT 59.383 55.000 0.00 0.00 0.00 3.32
413 415 0.614812 TCGGGGTTTGGTAGGTTAGC 59.385 55.000 0.00 0.00 0.00 3.09
414 416 1.065926 GGTCGGGGTTTGGTAGGTTAG 60.066 57.143 0.00 0.00 0.00 2.34
415 417 0.983467 GGTCGGGGTTTGGTAGGTTA 59.017 55.000 0.00 0.00 0.00 2.85
416 418 1.061324 TGGTCGGGGTTTGGTAGGTT 61.061 55.000 0.00 0.00 0.00 3.50
417 419 1.061324 TTGGTCGGGGTTTGGTAGGT 61.061 55.000 0.00 0.00 0.00 3.08
418 420 0.322187 CTTGGTCGGGGTTTGGTAGG 60.322 60.000 0.00 0.00 0.00 3.18
419 421 0.688487 TCTTGGTCGGGGTTTGGTAG 59.312 55.000 0.00 0.00 0.00 3.18
420 422 0.688487 CTCTTGGTCGGGGTTTGGTA 59.312 55.000 0.00 0.00 0.00 3.25
421 423 1.454539 CTCTTGGTCGGGGTTTGGT 59.545 57.895 0.00 0.00 0.00 3.67
422 424 1.971695 GCTCTTGGTCGGGGTTTGG 60.972 63.158 0.00 0.00 0.00 3.28
423 425 2.325082 CGCTCTTGGTCGGGGTTTG 61.325 63.158 0.00 0.00 0.00 2.93
424 426 2.032071 CGCTCTTGGTCGGGGTTT 59.968 61.111 0.00 0.00 0.00 3.27
425 427 4.016706 CCGCTCTTGGTCGGGGTT 62.017 66.667 0.00 0.00 41.82 4.11
428 430 4.697756 TTGCCGCTCTTGGTCGGG 62.698 66.667 2.78 0.00 45.37 5.14
430 432 3.777925 CGTTGCCGCTCTTGGTCG 61.778 66.667 0.00 0.00 0.00 4.79
441 443 2.999363 CTTGTTGGTTCGGCGTTGCC 62.999 60.000 6.85 8.46 46.75 4.52
442 444 1.657181 CTTGTTGGTTCGGCGTTGC 60.657 57.895 6.85 0.00 0.00 4.17
443 445 0.041312 CTCTTGTTGGTTCGGCGTTG 60.041 55.000 6.85 0.00 0.00 4.10
444 446 1.782028 GCTCTTGTTGGTTCGGCGTT 61.782 55.000 6.85 0.00 0.00 4.84
445 447 2.251642 GCTCTTGTTGGTTCGGCGT 61.252 57.895 6.85 0.00 0.00 5.68
446 448 2.250939 TGCTCTTGTTGGTTCGGCG 61.251 57.895 0.00 0.00 0.00 6.46
447 449 1.282875 GTGCTCTTGTTGGTTCGGC 59.717 57.895 0.00 0.00 0.00 5.54
448 450 0.817634 TGGTGCTCTTGTTGGTTCGG 60.818 55.000 0.00 0.00 0.00 4.30
449 451 1.021202 TTGGTGCTCTTGTTGGTTCG 58.979 50.000 0.00 0.00 0.00 3.95
450 452 1.748493 TGTTGGTGCTCTTGTTGGTTC 59.252 47.619 0.00 0.00 0.00 3.62
451 453 1.846007 TGTTGGTGCTCTTGTTGGTT 58.154 45.000 0.00 0.00 0.00 3.67
452 454 1.956477 GATGTTGGTGCTCTTGTTGGT 59.044 47.619 0.00 0.00 0.00 3.67
453 455 2.227388 GAGATGTTGGTGCTCTTGTTGG 59.773 50.000 0.00 0.00 0.00 3.77
454 456 2.096069 CGAGATGTTGGTGCTCTTGTTG 60.096 50.000 0.00 0.00 0.00 3.33
455 457 2.146342 CGAGATGTTGGTGCTCTTGTT 58.854 47.619 0.00 0.00 0.00 2.83
456 458 1.344438 TCGAGATGTTGGTGCTCTTGT 59.656 47.619 0.00 0.00 0.00 3.16
457 459 1.728971 GTCGAGATGTTGGTGCTCTTG 59.271 52.381 0.00 0.00 0.00 3.02
458 460 1.344438 TGTCGAGATGTTGGTGCTCTT 59.656 47.619 0.00 0.00 0.00 2.85
459 461 0.969149 TGTCGAGATGTTGGTGCTCT 59.031 50.000 0.00 0.00 0.00 4.09
460 462 1.461127 GTTGTCGAGATGTTGGTGCTC 59.539 52.381 0.00 0.00 0.00 4.26
461 463 1.512926 GTTGTCGAGATGTTGGTGCT 58.487 50.000 0.00 0.00 0.00 4.40
462 464 0.517316 GGTTGTCGAGATGTTGGTGC 59.483 55.000 0.00 0.00 0.00 5.01
463 465 1.877637 TGGTTGTCGAGATGTTGGTG 58.122 50.000 0.00 0.00 0.00 4.17
464 466 2.631160 TTGGTTGTCGAGATGTTGGT 57.369 45.000 0.00 0.00 0.00 3.67
465 467 3.550030 GGTTTTGGTTGTCGAGATGTTGG 60.550 47.826 0.00 0.00 0.00 3.77
466 468 3.628017 GGTTTTGGTTGTCGAGATGTTG 58.372 45.455 0.00 0.00 0.00 3.33
467 469 2.289547 CGGTTTTGGTTGTCGAGATGTT 59.710 45.455 0.00 0.00 0.00 2.71
468 470 1.871039 CGGTTTTGGTTGTCGAGATGT 59.129 47.619 0.00 0.00 0.00 3.06
469 471 1.196808 CCGGTTTTGGTTGTCGAGATG 59.803 52.381 0.00 0.00 0.00 2.90
470 472 1.519408 CCGGTTTTGGTTGTCGAGAT 58.481 50.000 0.00 0.00 0.00 2.75
471 473 0.533308 CCCGGTTTTGGTTGTCGAGA 60.533 55.000 0.00 0.00 0.00 4.04
472 474 1.512156 CCCCGGTTTTGGTTGTCGAG 61.512 60.000 0.00 0.00 0.00 4.04
473 475 1.526455 CCCCGGTTTTGGTTGTCGA 60.526 57.895 0.00 0.00 0.00 4.20
474 476 1.526455 TCCCCGGTTTTGGTTGTCG 60.526 57.895 0.00 0.00 0.00 4.35
475 477 0.752376 TGTCCCCGGTTTTGGTTGTC 60.752 55.000 0.00 0.00 0.00 3.18
476 478 1.038681 GTGTCCCCGGTTTTGGTTGT 61.039 55.000 0.00 0.00 0.00 3.32
477 479 1.737201 GTGTCCCCGGTTTTGGTTG 59.263 57.895 0.00 0.00 0.00 3.77
478 480 1.456145 GGTGTCCCCGGTTTTGGTT 60.456 57.895 0.00 0.00 0.00 3.67
479 481 2.196502 GGTGTCCCCGGTTTTGGT 59.803 61.111 0.00 0.00 0.00 3.67
480 482 1.043673 TTTGGTGTCCCCGGTTTTGG 61.044 55.000 0.00 0.00 35.15 3.28
481 483 0.103390 GTTTGGTGTCCCCGGTTTTG 59.897 55.000 0.00 0.00 35.15 2.44
482 484 1.044231 GGTTTGGTGTCCCCGGTTTT 61.044 55.000 0.00 0.00 35.15 2.43
483 485 1.456145 GGTTTGGTGTCCCCGGTTT 60.456 57.895 0.00 0.00 35.15 3.27
484 486 2.196502 GGTTTGGTGTCCCCGGTT 59.803 61.111 0.00 0.00 35.15 4.44
485 487 3.893399 GGGTTTGGTGTCCCCGGT 61.893 66.667 0.00 0.00 37.89 5.28
488 490 3.572222 TCCGGGTTTGGTGTCCCC 61.572 66.667 0.00 0.00 40.54 4.81
489 491 2.281970 GTCCGGGTTTGGTGTCCC 60.282 66.667 0.00 0.00 40.26 4.46
490 492 2.281970 GGTCCGGGTTTGGTGTCC 60.282 66.667 0.00 0.00 0.00 4.02
491 493 1.152922 TTGGTCCGGGTTTGGTGTC 60.153 57.895 0.00 0.00 0.00 3.67
492 494 1.152839 CTTGGTCCGGGTTTGGTGT 60.153 57.895 0.00 0.00 0.00 4.16
493 495 0.889186 CTCTTGGTCCGGGTTTGGTG 60.889 60.000 0.00 0.00 0.00 4.17
494 496 1.454539 CTCTTGGTCCGGGTTTGGT 59.545 57.895 0.00 0.00 0.00 3.67
495 497 1.971695 GCTCTTGGTCCGGGTTTGG 60.972 63.158 0.00 0.00 0.00 3.28
496 498 2.325082 CGCTCTTGGTCCGGGTTTG 61.325 63.158 0.00 0.00 0.00 2.93
497 499 2.032071 CGCTCTTGGTCCGGGTTT 59.968 61.111 0.00 0.00 0.00 3.27
498 500 4.016706 CCGCTCTTGGTCCGGGTT 62.017 66.667 0.00 0.00 38.42 4.11
501 503 3.976701 ATTGCCGCTCTTGGTCCGG 62.977 63.158 0.00 0.00 44.58 5.14
502 504 2.436646 ATTGCCGCTCTTGGTCCG 60.437 61.111 0.00 0.00 0.00 4.79
503 505 3.056313 GCATTGCCGCTCTTGGTCC 62.056 63.158 0.00 0.00 0.00 4.46
504 506 2.486966 GCATTGCCGCTCTTGGTC 59.513 61.111 0.00 0.00 0.00 4.02
505 507 3.064324 GGCATTGCCGCTCTTGGT 61.064 61.111 12.82 0.00 39.62 3.67
515 517 6.665474 TGATTTGAATTTATGTGGCATTGC 57.335 33.333 0.00 0.00 0.00 3.56
519 521 9.894783 CAAATTTTGATTTGAATTTATGTGGCA 57.105 25.926 2.88 0.00 42.47 4.92
563 565 8.202745 TGTCTTTATTTTCGTGGCAAATTTTT 57.797 26.923 0.00 0.00 0.00 1.94
596 598 9.706691 CCAATTCTAACTAACTCTCACTTGTAA 57.293 33.333 0.00 0.00 0.00 2.41
707 742 3.572682 CGCTACTAAGTATGACATCCCCA 59.427 47.826 0.00 0.00 0.00 4.96
708 743 3.825014 TCGCTACTAAGTATGACATCCCC 59.175 47.826 0.00 0.00 0.00 4.81
743 1757 2.431942 GACAACGACATCGCCGGT 60.432 61.111 1.90 0.00 44.43 5.28
745 1759 2.126071 AGGACAACGACATCGCCG 60.126 61.111 0.14 0.00 44.43 6.46
747 1761 1.738099 AGCAGGACAACGACATCGC 60.738 57.895 0.14 0.00 44.43 4.58
748 1762 0.667487 ACAGCAGGACAACGACATCG 60.667 55.000 0.00 0.00 46.33 3.84
749 1763 1.195448 CAACAGCAGGACAACGACATC 59.805 52.381 0.00 0.00 0.00 3.06
751 1765 1.436195 GCAACAGCAGGACAACGACA 61.436 55.000 0.00 0.00 0.00 4.35
753 1767 1.891919 GGCAACAGCAGGACAACGA 60.892 57.895 0.00 0.00 0.00 3.85
754 1768 2.639286 GGCAACAGCAGGACAACG 59.361 61.111 0.00 0.00 0.00 4.10
756 1770 0.537143 AATCGGCAACAGCAGGACAA 60.537 50.000 0.00 0.00 0.00 3.18
758 1772 0.169009 GAAATCGGCAACAGCAGGAC 59.831 55.000 0.00 0.00 0.00 3.85
762 1776 1.976474 GGGGAAATCGGCAACAGCA 60.976 57.895 0.00 0.00 0.00 4.41
783 2248 0.599558 GTGCAGCTTCAAGATGGCAA 59.400 50.000 4.50 0.00 31.11 4.52
785 2250 0.886563 AAGTGCAGCTTCAAGATGGC 59.113 50.000 4.50 0.00 31.11 4.40
796 2261 1.269257 GGTTTTCAGGTGAAGTGCAGC 60.269 52.381 0.00 0.00 45.24 5.25
797 2262 2.023673 TGGTTTTCAGGTGAAGTGCAG 58.976 47.619 0.00 0.00 35.21 4.41
798 2263 1.748493 GTGGTTTTCAGGTGAAGTGCA 59.252 47.619 0.00 0.00 35.21 4.57
799 2264 1.067060 GGTGGTTTTCAGGTGAAGTGC 59.933 52.381 0.00 0.00 35.21 4.40
807 2272 2.543653 CGAAAGCTTGGTGGTTTTCAGG 60.544 50.000 0.00 0.00 45.15 3.86
820 2285 3.512680 CGTCTTACTGGATCGAAAGCTT 58.487 45.455 0.00 0.00 0.00 3.74
822 2287 1.588861 GCGTCTTACTGGATCGAAAGC 59.411 52.381 0.00 0.00 0.00 3.51
823 2288 2.194271 GGCGTCTTACTGGATCGAAAG 58.806 52.381 0.00 0.00 0.00 2.62
1229 2703 2.747855 GGAAGCTGAGGTTGCCGG 60.748 66.667 0.00 0.00 0.00 6.13
1305 2779 5.164012 GCAGTGATCATCGATGTTATAGTGC 60.164 44.000 24.09 23.56 0.00 4.40
1418 2895 2.613691 GGTATGACACGTTACCTGTGG 58.386 52.381 6.87 0.00 41.64 4.17
1425 2905 0.108709 GCCCACGGTATGACACGTTA 60.109 55.000 0.00 0.00 42.04 3.18
1434 2917 1.722034 AGATCAGATGCCCACGGTAT 58.278 50.000 0.00 0.00 0.00 2.73
1450 2933 6.324561 CGGTGATATCATCGGATCATAGAT 57.675 41.667 27.20 0.00 45.94 1.98
1603 3099 5.297029 GGAAGAAATATTTCTCCTCCCAACG 59.703 44.000 26.83 0.00 46.22 4.10
1617 3113 3.648545 CTCCCCCTTCTCGGAAGAAATAT 59.351 47.826 13.28 0.00 40.95 1.28
1638 3134 4.607293 TTCACTGACAATCACTGTAGCT 57.393 40.909 0.00 0.00 38.84 3.32
1646 3142 3.187022 CACTCGCATTTCACTGACAATCA 59.813 43.478 0.00 0.00 0.00 2.57
1898 3421 8.031277 TGATCTTACAATCTCGACATATGGATG 58.969 37.037 7.80 0.00 39.16 3.51
1998 3524 4.037565 CCATCTGACCACATGATTCATTGG 59.962 45.833 18.47 18.47 32.45 3.16
2266 4543 3.020984 GTCGGGCTTCCAATCCAATTTA 58.979 45.455 0.00 0.00 0.00 1.40
2282 4559 6.427853 TCATTAAGAGCATTATGATTGTCGGG 59.572 38.462 0.00 0.00 0.00 5.14
2285 4562 9.823098 GTCATCATTAAGAGCATTATGATTGTC 57.177 33.333 0.00 0.00 0.00 3.18
2313 4590 5.046591 TCCCAGTAACACTCTTCAACCATAG 60.047 44.000 0.00 0.00 0.00 2.23
2349 4626 9.827411 CAATGTCTTGATCATATGAATCATCAC 57.173 33.333 9.99 12.32 34.69 3.06
2366 4661 6.430925 TGAAACCCAAGTATCTCAATGTCTTG 59.569 38.462 0.00 0.00 36.34 3.02
2412 4707 2.195741 ATGCTGTGATGCACTCAAGT 57.804 45.000 0.00 0.00 46.33 3.16
2519 4817 1.273886 GATCCTCTCCCGCTCATTACC 59.726 57.143 0.00 0.00 0.00 2.85
2527 4825 2.629336 AAGATTTGATCCTCTCCCGC 57.371 50.000 0.00 0.00 0.00 6.13
2641 4944 7.090173 GTGCAAGCCATTTCTTAAATAGTTCA 58.910 34.615 0.00 0.00 0.00 3.18
2649 4952 5.010922 ACATCTTGTGCAAGCCATTTCTTAA 59.989 36.000 7.03 0.00 38.28 1.85
2704 5018 9.539194 AACCTCCTTTTCAATAGAGAAATTGAT 57.461 29.630 0.50 0.00 43.50 2.57
2832 5202 0.737367 TGAAGCTGGAAGACATCGCG 60.737 55.000 0.00 0.00 34.07 5.87
2846 5216 8.764524 TTCTCTCTGTAAACTATCTTTGAAGC 57.235 34.615 0.00 0.00 0.00 3.86
2870 5240 9.696572 TGTATCACTCTACAGGACTTAGTAATT 57.303 33.333 0.00 0.00 0.00 1.40
2895 5265 3.056250 TCAACAGAAGAAGCTAGCTCCTG 60.056 47.826 19.65 22.07 0.00 3.86
2897 5267 3.601443 TCAACAGAAGAAGCTAGCTCC 57.399 47.619 19.65 4.84 0.00 4.70
2905 5275 8.733458 TGGTAATTCATGATTCAACAGAAGAAG 58.267 33.333 0.00 0.00 0.00 2.85
2939 5309 9.541143 GAGAGCTCTACTAAAGCAGAAAAATAT 57.459 33.333 18.25 0.00 42.35 1.28
2986 5376 3.470645 GGGGATACACTTTGCGTATCT 57.529 47.619 9.47 0.00 43.13 1.98
3041 5569 1.551883 GCCTCGTTGAACTACCCCTAA 59.448 52.381 0.00 0.00 0.00 2.69
3043 5571 0.834687 TGCCTCGTTGAACTACCCCT 60.835 55.000 0.00 0.00 0.00 4.79
3044 5572 0.035739 TTGCCTCGTTGAACTACCCC 59.964 55.000 0.00 0.00 0.00 4.95
3045 5573 1.154197 GTTGCCTCGTTGAACTACCC 58.846 55.000 0.00 0.00 0.00 3.69
3048 5576 3.188159 ACTTGTTGCCTCGTTGAACTA 57.812 42.857 0.00 0.00 0.00 2.24
3069 5607 9.480053 CATGAACATTTAAATTGGAGTGAACTT 57.520 29.630 0.00 0.00 0.00 2.66
3070 5608 8.641541 ACATGAACATTTAAATTGGAGTGAACT 58.358 29.630 0.00 0.00 0.00 3.01
3071 5609 8.816640 ACATGAACATTTAAATTGGAGTGAAC 57.183 30.769 0.00 0.00 0.00 3.18
3131 5669 5.824624 ACAGATGCAGGAAGTATAACATTGG 59.175 40.000 0.00 0.00 0.00 3.16
3147 5685 6.051717 GCTAGAGGAAAAAGATACAGATGCA 58.948 40.000 0.00 0.00 0.00 3.96
3164 5702 5.187186 TCTTTGTTACCCTAAGTGCTAGAGG 59.813 44.000 0.00 0.00 0.00 3.69
3166 5704 6.495872 TCTTCTTTGTTACCCTAAGTGCTAGA 59.504 38.462 0.00 0.00 0.00 2.43
3171 5871 5.763204 TGCTTCTTCTTTGTTACCCTAAGTG 59.237 40.000 0.00 0.00 0.00 3.16
3176 5876 3.570125 GCTTGCTTCTTCTTTGTTACCCT 59.430 43.478 0.00 0.00 0.00 4.34
3184 5884 5.163478 ACAGATGTTTGCTTGCTTCTTCTTT 60.163 36.000 0.00 0.00 0.00 2.52
3225 5926 1.539388 CTGCTAAAATGTGTCGGCCAA 59.461 47.619 2.24 0.00 0.00 4.52
3231 5932 5.173854 GCAACTTTGACTGCTAAAATGTGTC 59.826 40.000 0.00 0.00 35.62 3.67
3283 6179 5.696724 ACTCCTTCGAACAAAAGTACTCATG 59.303 40.000 0.00 0.70 0.00 3.07
3284 6180 5.855045 ACTCCTTCGAACAAAAGTACTCAT 58.145 37.500 0.00 0.00 0.00 2.90
3288 6184 9.726232 AAATTTTACTCCTTCGAACAAAAGTAC 57.274 29.630 0.00 0.00 0.00 2.73
3371 6267 8.345565 CCAATGTTACTGGCATAGATTTCTAAC 58.654 37.037 0.00 0.00 31.39 2.34
3389 6285 4.895668 AAGACGTTACCCTCCAATGTTA 57.104 40.909 0.00 0.00 0.00 2.41
3400 6296 5.416947 ACACATATCCAGAAAGACGTTACC 58.583 41.667 0.00 0.00 0.00 2.85
3426 6322 8.125978 TGCCAGAATCATTCTTTTGTTTCTAT 57.874 30.769 0.00 0.00 38.11 1.98
3437 6333 2.842496 TCCAGACTGCCAGAATCATTCT 59.158 45.455 0.00 0.00 41.70 2.40
3455 6351 3.573110 TCACACATGCATGATTGTTTCCA 59.427 39.130 32.75 9.55 0.00 3.53
3504 6451 8.424918 AGCTTAAGAATGTATATACTGCACACT 58.575 33.333 13.89 3.04 0.00 3.55
3529 6476 4.887748 ACTGGGCGATGATTATGTTCTAG 58.112 43.478 0.00 0.00 0.00 2.43
3546 6493 3.019564 CTGGAAAGCTATTTGGACTGGG 58.980 50.000 0.00 0.00 0.00 4.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.