Multiple sequence alignment - TraesCS5D01G072800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G072800 chr5D 100.000 3945 0 0 1 3945 72361061 72365005 0.000000e+00 7286.0
1 TraesCS5D01G072800 chr5D 77.148 1676 301 53 988 2633 72400720 72402343 0.000000e+00 898.0
2 TraesCS5D01G072800 chr5D 77.759 1187 235 24 1189 2360 72492074 72493246 0.000000e+00 702.0
3 TraesCS5D01G072800 chr5D 78.909 678 121 17 1087 1747 6933037 6932365 1.300000e-119 440.0
4 TraesCS5D01G072800 chr5D 72.045 973 196 50 1085 2010 72378012 72378955 1.850000e-53 220.0
5 TraesCS5D01G072800 chr5B 95.313 1835 65 10 995 2829 82171529 82169716 0.000000e+00 2892.0
6 TraesCS5D01G072800 chr5B 76.481 1637 308 53 1026 2633 81782554 81780966 0.000000e+00 819.0
7 TraesCS5D01G072800 chr5B 77.843 1196 231 25 1147 2322 81625541 81624360 0.000000e+00 710.0
8 TraesCS5D01G072800 chr5B 90.000 330 21 11 670 989 82172153 82171826 2.190000e-112 416.0
9 TraesCS5D01G072800 chr5B 78.497 572 102 15 1232 1789 81571448 81570884 4.850000e-94 355.0
10 TraesCS5D01G072800 chr5B 74.055 952 186 38 1702 2633 81600818 81599908 2.270000e-87 333.0
11 TraesCS5D01G072800 chr5B 90.395 177 11 2 499 675 82172365 82172195 1.100000e-55 228.0
12 TraesCS5D01G072800 chr5B 77.720 386 59 11 1085 1469 82048876 82048517 1.110000e-50 211.0
13 TraesCS5D01G072800 chr5B 95.238 63 3 0 443 505 82174539 82174477 2.510000e-17 100.0
14 TraesCS5D01G072800 chr5B 86.747 83 10 1 2831 2912 278234276 278234358 1.510000e-14 91.6
15 TraesCS5D01G072800 chr7D 97.332 937 19 3 3010 3945 4171626 4170695 0.000000e+00 1587.0
16 TraesCS5D01G072800 chr7D 96.657 658 21 1 3289 3945 431154194 431153537 0.000000e+00 1092.0
17 TraesCS5D01G072800 chr7D 97.552 531 12 1 3416 3945 552323610 552323080 0.000000e+00 907.0
18 TraesCS5D01G072800 chr7D 88.947 380 24 3 3013 3375 552324313 552323935 1.670000e-123 453.0
19 TraesCS5D01G072800 chr7A 92.589 958 50 9 3007 3945 219167420 219168375 0.000000e+00 1356.0
20 TraesCS5D01G072800 chrUn 92.461 955 49 9 3009 3945 49961908 49960959 0.000000e+00 1343.0
21 TraesCS5D01G072800 chrUn 89.337 966 56 15 3004 3945 33762935 33761993 0.000000e+00 1170.0
22 TraesCS5D01G072800 chrUn 89.119 965 59 15 3004 3945 33884485 33883544 0.000000e+00 1158.0
23 TraesCS5D01G072800 chrUn 89.016 965 57 16 3004 3945 33578161 33579099 0.000000e+00 1149.0
24 TraesCS5D01G072800 chrUn 95.596 545 21 3 3402 3945 36550120 36550662 0.000000e+00 870.0
25 TraesCS5D01G072800 chrUn 82.424 165 29 0 2831 2995 28792426 28792590 1.140000e-30 145.0
26 TraesCS5D01G072800 chrUn 78.689 122 23 3 2876 2996 100288786 100288667 1.180000e-10 78.7
27 TraesCS5D01G072800 chr5A 76.746 1518 262 57 1158 2622 2934622 2936101 0.000000e+00 763.0
28 TraesCS5D01G072800 chr5A 76.773 1227 243 24 1147 2355 64943060 64944262 0.000000e+00 649.0
29 TraesCS5D01G072800 chr5A 81.757 148 25 2 2832 2978 697549340 697549486 5.350000e-24 122.0
30 TraesCS5D01G072800 chr5A 85.542 83 11 1 2831 2912 328948631 328948713 7.020000e-13 86.1
31 TraesCS5D01G072800 chr3D 95.864 411 16 1 3021 3430 9132577 9132987 0.000000e+00 664.0
32 TraesCS5D01G072800 chr3D 88.263 426 31 4 3010 3417 55365505 55365929 3.540000e-135 492.0
33 TraesCS5D01G072800 chr2D 93.897 426 24 2 3006 3430 189689064 189689488 3.320000e-180 641.0
34 TraesCS5D01G072800 chr2D 82.751 429 47 12 23 434 39102446 39102028 1.350000e-94 357.0
35 TraesCS5D01G072800 chr4D 93.868 424 24 2 3008 3430 400894871 400894449 4.300000e-179 638.0
36 TraesCS5D01G072800 chr4D 93.587 421 24 3 3011 3430 472925584 472925166 3.350000e-175 625.0
37 TraesCS5D01G072800 chr2B 88.636 440 33 4 3008 3430 547098851 547098412 1.620000e-143 520.0
38 TraesCS5D01G072800 chr2B 80.000 760 71 29 29 750 339104292 339103576 1.650000e-133 486.0
39 TraesCS5D01G072800 chr2B 91.304 184 14 2 2832 3013 712620793 712620976 2.350000e-62 250.0
40 TraesCS5D01G072800 chr6D 87.955 440 33 8 3010 3430 49803645 49804083 5.890000e-138 501.0
41 TraesCS5D01G072800 chr2A 82.284 429 49 12 23 434 44249114 44249532 2.920000e-91 346.0
42 TraesCS5D01G072800 chr4A 90.270 185 17 1 2830 3013 96541921 96541737 1.420000e-59 241.0
43 TraesCS5D01G072800 chr3B 88.525 183 20 1 2832 3013 637678734 637678552 1.850000e-53 220.0
44 TraesCS5D01G072800 chr3B 82.353 221 22 9 99 308 40068171 40068385 4.050000e-40 176.0
45 TraesCS5D01G072800 chr3B 81.900 221 24 9 99 309 40076804 40077018 5.240000e-39 172.0
46 TraesCS5D01G072800 chr3A 82.278 158 28 0 2839 2996 571807844 571807687 1.910000e-28 137.0
47 TraesCS5D01G072800 chr6B 80.137 146 29 0 1166 1311 4786451 4786306 4.170000e-20 110.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G072800 chr5D 72361061 72365005 3944 False 7286 7286 100.0000 1 3945 1 chr5D.!!$F1 3944
1 TraesCS5D01G072800 chr5D 72400720 72402343 1623 False 898 898 77.1480 988 2633 1 chr5D.!!$F3 1645
2 TraesCS5D01G072800 chr5D 72492074 72493246 1172 False 702 702 77.7590 1189 2360 1 chr5D.!!$F4 1171
3 TraesCS5D01G072800 chr5D 6932365 6933037 672 True 440 440 78.9090 1087 1747 1 chr5D.!!$R1 660
4 TraesCS5D01G072800 chr5D 72378012 72378955 943 False 220 220 72.0450 1085 2010 1 chr5D.!!$F2 925
5 TraesCS5D01G072800 chr5B 82169716 82174539 4823 True 909 2892 92.7365 443 2829 4 chr5B.!!$R6 2386
6 TraesCS5D01G072800 chr5B 81780966 81782554 1588 True 819 819 76.4810 1026 2633 1 chr5B.!!$R4 1607
7 TraesCS5D01G072800 chr5B 81624360 81625541 1181 True 710 710 77.8430 1147 2322 1 chr5B.!!$R3 1175
8 TraesCS5D01G072800 chr5B 81570884 81571448 564 True 355 355 78.4970 1232 1789 1 chr5B.!!$R1 557
9 TraesCS5D01G072800 chr5B 81599908 81600818 910 True 333 333 74.0550 1702 2633 1 chr5B.!!$R2 931
10 TraesCS5D01G072800 chr7D 4170695 4171626 931 True 1587 1587 97.3320 3010 3945 1 chr7D.!!$R1 935
11 TraesCS5D01G072800 chr7D 431153537 431154194 657 True 1092 1092 96.6570 3289 3945 1 chr7D.!!$R2 656
12 TraesCS5D01G072800 chr7D 552323080 552324313 1233 True 680 907 93.2495 3013 3945 2 chr7D.!!$R3 932
13 TraesCS5D01G072800 chr7A 219167420 219168375 955 False 1356 1356 92.5890 3007 3945 1 chr7A.!!$F1 938
14 TraesCS5D01G072800 chrUn 49960959 49961908 949 True 1343 1343 92.4610 3009 3945 1 chrUn.!!$R3 936
15 TraesCS5D01G072800 chrUn 33761993 33762935 942 True 1170 1170 89.3370 3004 3945 1 chrUn.!!$R1 941
16 TraesCS5D01G072800 chrUn 33883544 33884485 941 True 1158 1158 89.1190 3004 3945 1 chrUn.!!$R2 941
17 TraesCS5D01G072800 chrUn 33578161 33579099 938 False 1149 1149 89.0160 3004 3945 1 chrUn.!!$F2 941
18 TraesCS5D01G072800 chrUn 36550120 36550662 542 False 870 870 95.5960 3402 3945 1 chrUn.!!$F3 543
19 TraesCS5D01G072800 chr5A 2934622 2936101 1479 False 763 763 76.7460 1158 2622 1 chr5A.!!$F1 1464
20 TraesCS5D01G072800 chr5A 64943060 64944262 1202 False 649 649 76.7730 1147 2355 1 chr5A.!!$F2 1208
21 TraesCS5D01G072800 chr2B 339103576 339104292 716 True 486 486 80.0000 29 750 1 chr2B.!!$R1 721

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
245 262 0.036294 GAACCACCCCTCCGAAGAAG 60.036 60.0 0.0 0.0 0.00 2.85 F
627 2784 0.108804 ATTGCCACGACTCACCTACG 60.109 55.0 0.0 0.0 0.00 3.51 F
913 3125 0.179000 GTGGCCGATCAATGAGGACT 59.821 55.0 0.0 0.0 33.23 3.85 F
2597 5229 0.390603 TCGCACCCTTTCCATACACG 60.391 55.0 0.0 0.0 0.00 4.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1670 4238 1.035932 AGGGGTCTACATCGTGTCCG 61.036 60.000 0.00 0.00 0.00 4.79 R
2467 5087 1.694150 GATAGGCCAGTCCTGTATGCA 59.306 52.381 5.01 0.00 46.98 3.96 R
2690 5322 0.107993 CCATCTCTTCCAGCGCTCAA 60.108 55.000 7.13 1.84 0.00 3.02 R
3517 6473 0.178301 TTTGCTACCACCGTGTGACA 59.822 50.000 5.71 0.00 35.23 3.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 2.669569 CCTTCGCCACACCACCAG 60.670 66.667 0.00 0.00 0.00 4.00
47 48 3.710722 AGCAGGTTCGCAGGGGAG 61.711 66.667 0.00 0.00 0.00 4.30
50 51 4.658786 AGGTTCGCAGGGGAGGGT 62.659 66.667 0.00 0.00 0.00 4.34
91 92 1.609794 GACGACAGAAGGAGGGGGT 60.610 63.158 0.00 0.00 0.00 4.95
95 96 2.612115 CAGAAGGAGGGGGTGGCT 60.612 66.667 0.00 0.00 0.00 4.75
97 98 2.610859 GAAGGAGGGGGTGGCTCA 60.611 66.667 0.00 0.00 0.00 4.26
120 121 0.755079 CCGATGCTGAGAATGGGAGA 59.245 55.000 0.00 0.00 0.00 3.71
139 140 5.399267 GGGAGAAGTAAGAGGAGGTGATAGA 60.399 48.000 0.00 0.00 0.00 1.98
159 170 1.375523 GCGGATGAGGGTTGAACGT 60.376 57.895 0.00 0.00 0.00 3.99
202 213 4.612412 AGGCGCCGACGAAACCAA 62.612 61.111 23.20 0.00 43.93 3.67
207 218 1.289109 CGCCGACGAAACCAATCTGT 61.289 55.000 0.00 0.00 43.93 3.41
208 219 0.165944 GCCGACGAAACCAATCTGTG 59.834 55.000 0.00 0.00 0.00 3.66
220 231 1.145759 AATCTGTGTATGCGCCGTCG 61.146 55.000 4.18 0.00 39.07 5.12
237 248 0.902531 TCGATGAAGAACCACCCCTC 59.097 55.000 0.00 0.00 0.00 4.30
241 258 0.765135 TGAAGAACCACCCCTCCGAA 60.765 55.000 0.00 0.00 0.00 4.30
243 260 0.473117 AAGAACCACCCCTCCGAAGA 60.473 55.000 0.00 0.00 0.00 2.87
245 262 0.036294 GAACCACCCCTCCGAAGAAG 60.036 60.000 0.00 0.00 0.00 2.85
265 282 2.528134 GGCACCTATAGAGCCCACA 58.472 57.895 19.74 0.00 42.58 4.17
266 283 0.837272 GGCACCTATAGAGCCCACAA 59.163 55.000 19.74 0.00 42.58 3.33
268 285 1.475213 GCACCTATAGAGCCCACAACC 60.475 57.143 0.00 0.00 0.00 3.77
310 327 3.592059 TCGGAAGAGGAAACAATTACGG 58.408 45.455 0.00 0.00 35.70 4.02
313 330 4.619863 CGGAAGAGGAAACAATTACGGAGA 60.620 45.833 0.00 0.00 32.54 3.71
341 358 3.996150 AAGATGCAACACAGGAACAAG 57.004 42.857 0.00 0.00 0.00 3.16
344 361 4.147321 AGATGCAACACAGGAACAAGAAT 58.853 39.130 0.00 0.00 0.00 2.40
348 365 3.366374 GCAACACAGGAACAAGAATAGCC 60.366 47.826 0.00 0.00 0.00 3.93
356 373 4.080863 AGGAACAAGAATAGCCTGACGAAT 60.081 41.667 0.00 0.00 0.00 3.34
370 387 2.106683 CGAATCCCCGCAACCAGAC 61.107 63.158 0.00 0.00 0.00 3.51
392 409 2.358737 CCGTGAACACCTCCAGCC 60.359 66.667 0.00 0.00 0.00 4.85
408 425 4.087892 CCACCCAGCAGACCGGAG 62.088 72.222 9.46 0.00 0.00 4.63
430 447 1.161843 GGCCGATTTGGAAGACGAAA 58.838 50.000 0.00 0.00 42.00 3.46
457 496 1.081175 GAGAAAACAGCAAGCGCCC 60.081 57.895 2.29 0.00 39.83 6.13
497 536 1.967535 CCCTCTCTGCGAAGTGTGA 59.032 57.895 0.00 0.00 0.00 3.58
511 2668 2.661866 GTGAACCGACGCACAGCT 60.662 61.111 0.00 0.00 35.19 4.24
513 2670 4.077188 GAACCGACGCACAGCTGC 62.077 66.667 15.27 0.00 40.38 5.25
523 2680 2.126596 CACAGCTGCCACCCACAAA 61.127 57.895 15.27 0.00 0.00 2.83
530 2687 2.513753 CTGCCACCCACAAAACTCATA 58.486 47.619 0.00 0.00 0.00 2.15
531 2688 2.228822 CTGCCACCCACAAAACTCATAC 59.771 50.000 0.00 0.00 0.00 2.39
532 2689 2.235016 GCCACCCACAAAACTCATACA 58.765 47.619 0.00 0.00 0.00 2.29
533 2690 2.228822 GCCACCCACAAAACTCATACAG 59.771 50.000 0.00 0.00 0.00 2.74
534 2691 3.486383 CCACCCACAAAACTCATACAGT 58.514 45.455 0.00 0.00 36.64 3.55
535 2692 4.647611 CCACCCACAAAACTCATACAGTA 58.352 43.478 0.00 0.00 32.30 2.74
536 2693 5.253330 CCACCCACAAAACTCATACAGTAT 58.747 41.667 0.00 0.00 32.30 2.12
577 2734 0.109551 TCGAGAAGCAAGAGACGCAG 60.110 55.000 0.00 0.00 0.00 5.18
579 2736 1.627879 GAGAAGCAAGAGACGCAGAG 58.372 55.000 0.00 0.00 0.00 3.35
595 2752 0.978146 AGAGGCCAGCACGTAAGGAT 60.978 55.000 5.01 0.00 46.39 3.24
627 2784 0.108804 ATTGCCACGACTCACCTACG 60.109 55.000 0.00 0.00 0.00 3.51
632 2789 1.579932 ACGACTCACCTACGTGCAG 59.420 57.895 0.00 0.00 40.04 4.41
650 2807 3.274288 GCAGGCCCATATACATCTAAGC 58.726 50.000 0.00 0.00 0.00 3.09
653 2810 3.054802 AGGCCCATATACATCTAAGCAGC 60.055 47.826 0.00 0.00 0.00 5.25
659 2816 6.818644 CCCATATACATCTAAGCAGCGTAAAT 59.181 38.462 0.00 0.00 0.00 1.40
724 2928 4.869297 CGAGTCATCAGAAGCTCTCAATTT 59.131 41.667 0.00 0.00 0.00 1.82
728 2932 5.064962 GTCATCAGAAGCTCTCAATTTCTGG 59.935 44.000 12.05 0.30 44.88 3.86
745 2949 5.407407 TTCTGGGAGCTTAGAAACTGTAG 57.593 43.478 6.56 0.00 30.49 2.74
750 2954 5.112686 GGGAGCTTAGAAACTGTAGTGATG 58.887 45.833 0.00 0.00 0.00 3.07
752 2956 6.166982 GGAGCTTAGAAACTGTAGTGATGTT 58.833 40.000 0.00 0.00 0.00 2.71
753 2957 6.651225 GGAGCTTAGAAACTGTAGTGATGTTT 59.349 38.462 0.00 0.00 36.73 2.83
754 2958 7.148557 GGAGCTTAGAAACTGTAGTGATGTTTC 60.149 40.741 9.07 9.07 45.59 2.78
755 2959 7.217200 AGCTTAGAAACTGTAGTGATGTTTCA 58.783 34.615 16.57 4.22 46.82 2.69
756 2960 7.386299 AGCTTAGAAACTGTAGTGATGTTTCAG 59.614 37.037 16.57 9.42 46.82 3.02
757 2961 7.385205 GCTTAGAAACTGTAGTGATGTTTCAGA 59.615 37.037 16.57 5.06 46.82 3.27
758 2962 8.589335 TTAGAAACTGTAGTGATGTTTCAGAC 57.411 34.615 16.57 0.00 46.82 3.51
759 2963 6.582636 AGAAACTGTAGTGATGTTTCAGACA 58.417 36.000 16.57 0.00 46.82 3.41
800 3011 3.836365 AGCTTAGAAGAATCAGGCTCC 57.164 47.619 0.00 0.00 0.00 4.70
807 3018 2.706339 AGAATCAGGCTCCACATCAC 57.294 50.000 0.00 0.00 0.00 3.06
879 3090 2.901813 CCAGGAGCAGGAGCAGAG 59.098 66.667 0.00 0.00 45.49 3.35
880 3091 1.685077 CCAGGAGCAGGAGCAGAGA 60.685 63.158 0.00 0.00 45.49 3.10
881 3092 1.678598 CCAGGAGCAGGAGCAGAGAG 61.679 65.000 0.00 0.00 45.49 3.20
882 3093 2.059786 AGGAGCAGGAGCAGAGAGC 61.060 63.158 0.00 0.00 45.49 4.09
909 3121 1.482621 CGTCGTGGCCGATCAATGAG 61.483 60.000 0.00 0.00 46.30 2.90
913 3125 0.179000 GTGGCCGATCAATGAGGACT 59.821 55.000 0.00 0.00 33.23 3.85
1036 3539 4.901849 TCATCACCACCAAAATAAAACCCA 59.098 37.500 0.00 0.00 0.00 4.51
1059 3562 1.702957 ACAGATCGAGGGTTCCCAAAA 59.297 47.619 10.73 0.00 0.00 2.44
1367 3881 3.450115 CGTCCCTCCTCCGTGGAC 61.450 72.222 0.00 0.00 44.12 4.02
1604 4154 2.826725 GTCCTACAGTGAGCACCTAGTT 59.173 50.000 0.00 0.00 0.00 2.24
1873 4454 3.918591 CGAAGAGCACTTTATGTACACGT 59.081 43.478 0.00 0.00 36.39 4.49
2297 4911 3.987868 TGTTTCATTCTTCTCGTTCTCCG 59.012 43.478 0.00 0.00 38.13 4.63
2327 4944 6.150140 ACATCAAGGAAGCATCAACTAAAGAC 59.850 38.462 0.00 0.00 0.00 3.01
2381 4998 6.845302 TGATGATGTTGAAGATTGTTACTGC 58.155 36.000 0.00 0.00 0.00 4.40
2420 5040 7.093596 TGCAAGGAGACATATGATATCGAGATT 60.094 37.037 10.38 0.00 0.00 2.40
2467 5087 1.691976 TGTGTTCCTGAGTGAATCGGT 59.308 47.619 0.00 0.00 31.71 4.69
2597 5229 0.390603 TCGCACCCTTTCCATACACG 60.391 55.000 0.00 0.00 0.00 4.49
2665 5297 9.469097 ACTAGTCTTGTAGTTTCTCTCACATAT 57.531 33.333 0.00 0.00 28.15 1.78
2667 5299 8.354711 AGTCTTGTAGTTTCTCTCACATATGA 57.645 34.615 10.38 0.00 0.00 2.15
2682 5314 8.081208 CTCACATATGAGCCTATGTTTAGTTG 57.919 38.462 10.38 0.00 45.83 3.16
2683 5315 6.483307 TCACATATGAGCCTATGTTTAGTTGC 59.517 38.462 10.38 0.00 39.69 4.17
2684 5316 6.260714 CACATATGAGCCTATGTTTAGTTGCA 59.739 38.462 10.38 0.00 39.69 4.08
2685 5317 7.000472 ACATATGAGCCTATGTTTAGTTGCAT 59.000 34.615 10.38 0.00 38.83 3.96
2686 5318 5.762825 ATGAGCCTATGTTTAGTTGCATG 57.237 39.130 0.00 0.00 0.00 4.06
2687 5319 4.588899 TGAGCCTATGTTTAGTTGCATGT 58.411 39.130 0.00 0.00 0.00 3.21
2688 5320 5.739959 TGAGCCTATGTTTAGTTGCATGTA 58.260 37.500 0.00 0.00 0.00 2.29
2689 5321 6.356556 TGAGCCTATGTTTAGTTGCATGTAT 58.643 36.000 0.00 0.00 0.00 2.29
2690 5322 6.828273 TGAGCCTATGTTTAGTTGCATGTATT 59.172 34.615 0.00 0.00 0.00 1.89
2691 5323 7.339212 TGAGCCTATGTTTAGTTGCATGTATTT 59.661 33.333 0.00 0.00 0.00 1.40
2694 5326 7.645340 GCCTATGTTTAGTTGCATGTATTTGAG 59.355 37.037 0.00 0.00 0.00 3.02
2698 5330 2.086869 AGTTGCATGTATTTGAGCGCT 58.913 42.857 11.27 11.27 0.00 5.92
2731 5363 3.059868 GCTCGATGTTTTTGTCGACTCAA 60.060 43.478 17.92 6.88 41.44 3.02
2750 5382 8.355806 CGACTCAAATTTATCAAAAAGCGTAAC 58.644 33.333 0.00 0.00 0.00 2.50
2829 5461 8.885494 ATTTGTTTGTTTAGTTGCATGTATGT 57.115 26.923 0.00 0.00 0.00 2.29
2830 5462 7.922505 TTGTTTGTTTAGTTGCATGTATGTC 57.077 32.000 0.00 0.00 0.00 3.06
2831 5463 6.139435 TGTTTGTTTAGTTGCATGTATGTCG 58.861 36.000 0.00 0.00 0.00 4.35
2832 5464 4.937696 TGTTTAGTTGCATGTATGTCGG 57.062 40.909 0.00 0.00 0.00 4.79
2833 5465 4.570930 TGTTTAGTTGCATGTATGTCGGA 58.429 39.130 0.00 0.00 0.00 4.55
2834 5466 4.390603 TGTTTAGTTGCATGTATGTCGGAC 59.609 41.667 0.00 0.00 0.00 4.79
2835 5467 1.640428 AGTTGCATGTATGTCGGACG 58.360 50.000 3.34 0.00 0.00 4.79
2836 5468 1.067142 AGTTGCATGTATGTCGGACGT 60.067 47.619 8.11 8.11 0.00 4.34
2837 5469 1.730064 GTTGCATGTATGTCGGACGTT 59.270 47.619 8.35 0.00 0.00 3.99
2838 5470 2.924926 GTTGCATGTATGTCGGACGTTA 59.075 45.455 8.35 0.00 0.00 3.18
2839 5471 3.233684 TGCATGTATGTCGGACGTTAA 57.766 42.857 8.35 0.00 0.00 2.01
2840 5472 3.787785 TGCATGTATGTCGGACGTTAAT 58.212 40.909 8.35 0.28 0.00 1.40
2841 5473 4.185394 TGCATGTATGTCGGACGTTAATT 58.815 39.130 8.35 0.00 0.00 1.40
2842 5474 4.632251 TGCATGTATGTCGGACGTTAATTT 59.368 37.500 8.35 0.00 0.00 1.82
2843 5475 5.122554 TGCATGTATGTCGGACGTTAATTTT 59.877 36.000 8.35 0.00 0.00 1.82
2844 5476 6.025280 GCATGTATGTCGGACGTTAATTTTT 58.975 36.000 8.35 0.00 0.00 1.94
2845 5477 7.148457 TGCATGTATGTCGGACGTTAATTTTTA 60.148 33.333 8.35 0.00 0.00 1.52
2846 5478 7.693120 GCATGTATGTCGGACGTTAATTTTTAA 59.307 33.333 8.35 0.00 0.00 1.52
2847 5479 9.205916 CATGTATGTCGGACGTTAATTTTTAAG 57.794 33.333 8.35 0.00 0.00 1.85
2848 5480 8.531622 TGTATGTCGGACGTTAATTTTTAAGA 57.468 30.769 8.35 0.00 0.00 2.10
2849 5481 8.434661 TGTATGTCGGACGTTAATTTTTAAGAC 58.565 33.333 8.35 0.00 0.00 3.01
2850 5482 6.841443 TGTCGGACGTTAATTTTTAAGACA 57.159 33.333 3.34 0.00 33.28 3.41
2851 5483 7.424227 TGTCGGACGTTAATTTTTAAGACAT 57.576 32.000 3.34 0.00 31.13 3.06
2852 5484 7.292292 TGTCGGACGTTAATTTTTAAGACATG 58.708 34.615 3.34 0.00 31.13 3.21
2853 5485 6.739550 GTCGGACGTTAATTTTTAAGACATGG 59.260 38.462 0.00 0.00 0.00 3.66
2854 5486 6.427547 TCGGACGTTAATTTTTAAGACATGGT 59.572 34.615 0.00 0.00 0.00 3.55
2855 5487 6.521821 CGGACGTTAATTTTTAAGACATGGTG 59.478 38.462 0.00 0.00 0.00 4.17
2856 5488 6.804783 GGACGTTAATTTTTAAGACATGGTGG 59.195 38.462 0.00 0.00 0.00 4.61
2857 5489 6.153756 ACGTTAATTTTTAAGACATGGTGGC 58.846 36.000 0.00 0.00 0.00 5.01
2858 5490 6.153067 CGTTAATTTTTAAGACATGGTGGCA 58.847 36.000 0.00 0.00 0.00 4.92
2859 5491 6.088883 CGTTAATTTTTAAGACATGGTGGCAC 59.911 38.462 9.70 9.70 0.00 5.01
2860 5492 3.634568 TTTTTAAGACATGGTGGCACG 57.365 42.857 12.17 0.00 0.00 5.34
2861 5493 0.878416 TTTAAGACATGGTGGCACGC 59.122 50.000 12.17 5.35 38.67 5.34
2862 5494 1.295357 TTAAGACATGGTGGCACGCG 61.295 55.000 12.17 3.53 41.51 6.01
2863 5495 2.161078 TAAGACATGGTGGCACGCGA 62.161 55.000 15.93 0.00 41.51 5.87
2864 5496 3.490759 GACATGGTGGCACGCGAG 61.491 66.667 15.93 5.97 41.51 5.03
2866 5498 4.758251 CATGGTGGCACGCGAGGA 62.758 66.667 15.93 0.00 41.51 3.71
2867 5499 3.785859 ATGGTGGCACGCGAGGAT 61.786 61.111 15.93 0.00 41.51 3.24
2868 5500 4.758251 TGGTGGCACGCGAGGATG 62.758 66.667 15.93 0.22 41.51 3.51
2870 5502 4.760047 GTGGCACGCGAGGATGGT 62.760 66.667 15.93 0.00 0.00 3.55
2871 5503 3.071837 TGGCACGCGAGGATGGTA 61.072 61.111 15.93 0.00 0.00 3.25
2872 5504 2.421739 GGCACGCGAGGATGGTAT 59.578 61.111 15.93 0.00 0.00 2.73
2873 5505 1.664965 GGCACGCGAGGATGGTATC 60.665 63.158 15.93 0.00 0.00 2.24
2874 5506 1.364171 GCACGCGAGGATGGTATCT 59.636 57.895 15.93 0.00 0.00 1.98
2875 5507 0.941463 GCACGCGAGGATGGTATCTG 60.941 60.000 15.93 0.00 0.00 2.90
2876 5508 0.668535 CACGCGAGGATGGTATCTGA 59.331 55.000 15.93 0.00 0.00 3.27
2877 5509 0.955178 ACGCGAGGATGGTATCTGAG 59.045 55.000 15.93 0.00 0.00 3.35
2878 5510 0.387878 CGCGAGGATGGTATCTGAGC 60.388 60.000 0.00 0.00 0.00 4.26
2879 5511 0.965439 GCGAGGATGGTATCTGAGCT 59.035 55.000 0.00 0.00 0.00 4.09
2880 5512 1.336702 GCGAGGATGGTATCTGAGCTG 60.337 57.143 0.00 0.00 0.00 4.24
2881 5513 1.959985 CGAGGATGGTATCTGAGCTGT 59.040 52.381 0.00 0.00 0.00 4.40
2882 5514 2.030363 CGAGGATGGTATCTGAGCTGTC 60.030 54.545 0.00 0.00 0.00 3.51
2883 5515 2.298729 GAGGATGGTATCTGAGCTGTCC 59.701 54.545 0.00 0.00 33.70 4.02
2884 5516 2.042464 GGATGGTATCTGAGCTGTCCA 58.958 52.381 0.00 0.00 33.70 4.02
2885 5517 2.636893 GGATGGTATCTGAGCTGTCCAT 59.363 50.000 0.00 0.00 38.21 3.41
2886 5518 3.306641 GGATGGTATCTGAGCTGTCCATC 60.307 52.174 11.95 11.95 45.86 3.51
2887 5519 3.037851 TGGTATCTGAGCTGTCCATCT 57.962 47.619 0.00 0.00 0.00 2.90
2888 5520 2.697229 TGGTATCTGAGCTGTCCATCTG 59.303 50.000 0.00 0.00 0.00 2.90
2889 5521 2.697751 GGTATCTGAGCTGTCCATCTGT 59.302 50.000 0.00 0.00 0.00 3.41
2890 5522 2.983907 ATCTGAGCTGTCCATCTGTG 57.016 50.000 0.00 0.00 0.00 3.66
2891 5523 0.248565 TCTGAGCTGTCCATCTGTGC 59.751 55.000 0.00 0.00 0.00 4.57
2892 5524 0.249676 CTGAGCTGTCCATCTGTGCT 59.750 55.000 0.00 0.00 36.63 4.40
2893 5525 1.479730 CTGAGCTGTCCATCTGTGCTA 59.520 52.381 0.00 0.00 33.83 3.49
2894 5526 2.102757 CTGAGCTGTCCATCTGTGCTAT 59.897 50.000 0.00 0.00 33.83 2.97
2895 5527 2.159000 TGAGCTGTCCATCTGTGCTATG 60.159 50.000 0.00 0.00 33.83 2.23
2896 5528 2.102084 GAGCTGTCCATCTGTGCTATGA 59.898 50.000 0.00 0.00 33.83 2.15
2897 5529 2.102757 AGCTGTCCATCTGTGCTATGAG 59.897 50.000 0.00 0.00 31.71 2.90
2898 5530 2.102084 GCTGTCCATCTGTGCTATGAGA 59.898 50.000 0.00 0.00 0.00 3.27
2899 5531 3.244146 GCTGTCCATCTGTGCTATGAGAT 60.244 47.826 0.00 0.00 0.00 2.75
2900 5532 4.743045 GCTGTCCATCTGTGCTATGAGATT 60.743 45.833 0.00 0.00 0.00 2.40
2901 5533 5.510349 GCTGTCCATCTGTGCTATGAGATTA 60.510 44.000 0.00 0.00 0.00 1.75
2902 5534 6.094193 TGTCCATCTGTGCTATGAGATTAG 57.906 41.667 0.00 0.00 0.00 1.73
2903 5535 4.928615 GTCCATCTGTGCTATGAGATTAGC 59.071 45.833 0.00 0.00 43.98 3.09
2946 5578 8.731275 ATTGAATACAAAAGTCATACGATGGA 57.269 30.769 0.00 0.00 39.54 3.41
2947 5579 8.731275 TTGAATACAAAAGTCATACGATGGAT 57.269 30.769 0.00 0.00 32.73 3.41
2948 5580 8.731275 TGAATACAAAAGTCATACGATGGATT 57.269 30.769 0.00 0.00 0.00 3.01
2949 5581 9.173021 TGAATACAAAAGTCATACGATGGATTT 57.827 29.630 0.00 0.00 0.00 2.17
2954 5586 9.787532 ACAAAAGTCATACGATGGATTTATTTG 57.212 29.630 0.00 0.00 0.00 2.32
2955 5587 8.745837 CAAAAGTCATACGATGGATTTATTTGC 58.254 33.333 0.00 0.00 0.00 3.68
2956 5588 7.566760 AAGTCATACGATGGATTTATTTGCA 57.433 32.000 0.00 0.00 0.00 4.08
2957 5589 7.194607 AGTCATACGATGGATTTATTTGCAG 57.805 36.000 0.00 0.00 0.00 4.41
2958 5590 6.992123 AGTCATACGATGGATTTATTTGCAGA 59.008 34.615 0.00 0.00 0.00 4.26
2959 5591 7.498900 AGTCATACGATGGATTTATTTGCAGAA 59.501 33.333 0.00 0.00 0.00 3.02
2960 5592 8.292448 GTCATACGATGGATTTATTTGCAGAAT 58.708 33.333 0.00 0.00 0.00 2.40
2961 5593 9.500785 TCATACGATGGATTTATTTGCAGAATA 57.499 29.630 0.00 0.00 0.00 1.75
2962 5594 9.546909 CATACGATGGATTTATTTGCAGAATAC 57.453 33.333 0.00 0.00 0.00 1.89
2963 5595 7.566760 ACGATGGATTTATTTGCAGAATACA 57.433 32.000 0.00 0.00 0.00 2.29
2964 5596 7.417612 ACGATGGATTTATTTGCAGAATACAC 58.582 34.615 0.00 0.00 0.00 2.90
2965 5597 7.066887 ACGATGGATTTATTTGCAGAATACACA 59.933 33.333 0.00 0.00 0.00 3.72
2966 5598 8.077991 CGATGGATTTATTTGCAGAATACACAT 58.922 33.333 2.46 0.00 0.00 3.21
2967 5599 9.403110 GATGGATTTATTTGCAGAATACACATC 57.597 33.333 2.46 0.00 0.00 3.06
2968 5600 8.523915 TGGATTTATTTGCAGAATACACATCT 57.476 30.769 0.00 0.00 0.00 2.90
2969 5601 8.407832 TGGATTTATTTGCAGAATACACATCTG 58.592 33.333 0.00 0.00 45.65 2.90
2970 5602 8.408601 GGATTTATTTGCAGAATACACATCTGT 58.591 33.333 5.54 0.00 44.88 3.41
2982 5614 2.462456 ACATCTGTGATGCGTGAAGT 57.538 45.000 7.39 0.00 0.00 3.01
2983 5615 3.592898 ACATCTGTGATGCGTGAAGTA 57.407 42.857 7.39 0.00 0.00 2.24
2984 5616 3.254060 ACATCTGTGATGCGTGAAGTAC 58.746 45.455 7.39 0.00 0.00 2.73
2995 5627 2.521105 GTGAAGTACGTGGGTTGAGT 57.479 50.000 0.00 0.00 0.00 3.41
2996 5628 2.132762 GTGAAGTACGTGGGTTGAGTG 58.867 52.381 0.00 0.00 0.00 3.51
2997 5629 2.033372 TGAAGTACGTGGGTTGAGTGA 58.967 47.619 0.00 0.00 0.00 3.41
2998 5630 2.223876 TGAAGTACGTGGGTTGAGTGAC 60.224 50.000 0.00 0.00 0.00 3.67
2999 5631 0.677842 AGTACGTGGGTTGAGTGACC 59.322 55.000 0.00 0.00 39.04 4.02
3000 5632 0.677842 GTACGTGGGTTGAGTGACCT 59.322 55.000 0.00 0.00 39.71 3.85
3001 5633 0.963962 TACGTGGGTTGAGTGACCTC 59.036 55.000 0.00 0.00 39.71 3.85
3002 5634 1.046472 ACGTGGGTTGAGTGACCTCA 61.046 55.000 0.00 0.00 45.95 3.86
3003 5635 0.321671 CGTGGGTTGAGTGACCTCAT 59.678 55.000 0.00 0.00 46.80 2.90
3004 5636 1.673033 CGTGGGTTGAGTGACCTCATC 60.673 57.143 0.00 0.00 46.80 2.92
3005 5637 1.625818 GTGGGTTGAGTGACCTCATCT 59.374 52.381 0.00 0.00 46.80 2.90
3501 6457 3.998341 GACGGTAGTAGCAAAAATCCACA 59.002 43.478 0.00 0.00 0.00 4.17
3502 6458 4.585879 ACGGTAGTAGCAAAAATCCACAT 58.414 39.130 0.00 0.00 0.00 3.21
3503 6459 4.394920 ACGGTAGTAGCAAAAATCCACATG 59.605 41.667 0.00 0.00 0.00 3.21
3504 6460 4.201910 CGGTAGTAGCAAAAATCCACATGG 60.202 45.833 0.00 0.00 0.00 3.66
3505 6461 4.705023 GGTAGTAGCAAAAATCCACATGGT 59.295 41.667 0.00 0.00 36.34 3.55
3506 6462 5.185056 GGTAGTAGCAAAAATCCACATGGTT 59.815 40.000 0.00 0.00 36.34 3.67
3507 6463 5.138125 AGTAGCAAAAATCCACATGGTTG 57.862 39.130 0.00 0.00 36.34 3.77
3508 6464 4.832266 AGTAGCAAAAATCCACATGGTTGA 59.168 37.500 0.00 0.00 36.34 3.18
3509 6465 4.686191 AGCAAAAATCCACATGGTTGAA 57.314 36.364 0.00 0.00 36.34 2.69
3510 6466 4.634199 AGCAAAAATCCACATGGTTGAAG 58.366 39.130 0.00 0.00 36.34 3.02
3511 6467 3.187022 GCAAAAATCCACATGGTTGAAGC 59.813 43.478 0.00 0.00 36.34 3.86
3512 6468 4.378774 CAAAAATCCACATGGTTGAAGCA 58.621 39.130 0.00 0.00 36.34 3.91
3513 6469 4.686191 AAAATCCACATGGTTGAAGCAA 57.314 36.364 0.00 0.00 36.34 3.91
3514 6470 4.686191 AAATCCACATGGTTGAAGCAAA 57.314 36.364 0.00 0.00 36.34 3.68
3515 6471 4.686191 AATCCACATGGTTGAAGCAAAA 57.314 36.364 0.00 0.00 36.34 2.44
3516 6472 4.686191 ATCCACATGGTTGAAGCAAAAA 57.314 36.364 0.00 0.00 36.34 1.94
3517 6473 4.686191 TCCACATGGTTGAAGCAAAAAT 57.314 36.364 0.00 0.00 36.34 1.82
3518 6474 4.378774 TCCACATGGTTGAAGCAAAAATG 58.621 39.130 0.00 0.00 36.34 2.32
3519 6475 4.128643 CCACATGGTTGAAGCAAAAATGT 58.871 39.130 0.00 0.00 34.30 2.71
3520 6476 4.211794 CCACATGGTTGAAGCAAAAATGTC 59.788 41.667 0.00 0.00 32.81 3.06
3731 6688 1.071699 AGCGGGTTGTAGCTTTTCTCA 59.928 47.619 0.00 0.00 41.52 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 4.263572 TGGTGGTGTGGCGAAGGG 62.264 66.667 0.00 0.00 0.00 3.95
14 15 2.669569 CTGGTGGTGTGGCGAAGG 60.670 66.667 0.00 0.00 0.00 3.46
15 16 3.357079 GCTGGTGGTGTGGCGAAG 61.357 66.667 0.00 0.00 0.00 3.79
16 17 4.182433 TGCTGGTGGTGTGGCGAA 62.182 61.111 0.00 0.00 0.00 4.70
17 18 4.624364 CTGCTGGTGGTGTGGCGA 62.624 66.667 0.00 0.00 0.00 5.54
19 20 4.586235 ACCTGCTGGTGGTGTGGC 62.586 66.667 15.36 0.00 46.51 5.01
31 32 4.785453 CCTCCCCTGCGAACCTGC 62.785 72.222 0.00 0.00 0.00 4.85
47 48 4.660938 GACCCCACTGTGGCACCC 62.661 72.222 21.47 6.19 35.79 4.61
54 55 3.311110 ACGATGCGACCCCACTGT 61.311 61.111 0.00 0.00 0.00 3.55
77 78 2.936032 GCCACCCCCTCCTTCTGT 60.936 66.667 0.00 0.00 0.00 3.41
81 82 2.936032 GTGAGCCACCCCCTCCTT 60.936 66.667 0.00 0.00 0.00 3.36
95 96 1.960040 ATTCTCAGCATCGGCCGTGA 61.960 55.000 27.15 20.06 42.56 4.35
97 98 1.522355 CATTCTCAGCATCGGCCGT 60.522 57.895 27.15 10.00 42.56 5.68
105 106 4.096681 TCTTACTTCTCCCATTCTCAGCA 58.903 43.478 0.00 0.00 0.00 4.41
120 121 4.219919 GCCTCTATCACCTCCTCTTACTT 58.780 47.826 0.00 0.00 0.00 2.24
139 140 1.299976 GTTCAACCCTCATCCGCCT 59.700 57.895 0.00 0.00 0.00 5.52
189 200 0.165944 CACAGATTGGTTTCGTCGGC 59.834 55.000 0.00 0.00 0.00 5.54
194 205 2.787723 GCGCATACACAGATTGGTTTCG 60.788 50.000 0.30 0.00 0.00 3.46
202 213 1.588932 CGACGGCGCATACACAGAT 60.589 57.895 10.83 0.00 0.00 2.90
207 218 0.869880 CTTCATCGACGGCGCATACA 60.870 55.000 5.31 0.00 37.46 2.29
208 219 0.594028 TCTTCATCGACGGCGCATAC 60.594 55.000 5.31 0.00 37.46 2.39
220 231 0.107654 CGGAGGGGTGGTTCTTCATC 60.108 60.000 0.00 0.00 0.00 2.92
237 248 1.344763 CTATAGGTGCCCCTTCTTCGG 59.655 57.143 0.00 0.00 42.66 4.30
241 258 1.723288 GCTCTATAGGTGCCCCTTCT 58.277 55.000 0.00 0.00 42.66 2.85
243 260 2.855669 GGCTCTATAGGTGCCCCTT 58.144 57.895 20.13 0.00 45.77 3.95
248 265 1.475213 GGTTGTGGGCTCTATAGGTGC 60.475 57.143 0.00 5.11 0.00 5.01
253 270 2.742348 TCTTCGGTTGTGGGCTCTATA 58.258 47.619 0.00 0.00 0.00 1.31
265 282 4.612412 TGGCGGCGTTCTTCGGTT 62.612 61.111 9.37 0.00 40.26 4.44
319 336 4.402155 TCTTGTTCCTGTGTTGCATCTTTT 59.598 37.500 0.00 0.00 0.00 2.27
321 338 3.554934 TCTTGTTCCTGTGTTGCATCTT 58.445 40.909 0.00 0.00 0.00 2.40
329 346 3.327757 TCAGGCTATTCTTGTTCCTGTGT 59.672 43.478 6.49 0.00 43.49 3.72
331 348 3.617531 CGTCAGGCTATTCTTGTTCCTGT 60.618 47.826 6.49 0.00 43.49 4.00
341 358 1.605712 CGGGGATTCGTCAGGCTATTC 60.606 57.143 0.00 0.00 0.00 1.75
344 361 2.792947 GCGGGGATTCGTCAGGCTA 61.793 63.158 0.00 0.00 0.00 3.93
348 365 2.106683 GGTTGCGGGGATTCGTCAG 61.107 63.158 0.00 0.00 0.00 3.51
356 373 3.998672 GACGTCTGGTTGCGGGGA 61.999 66.667 8.70 0.00 0.00 4.81
392 409 2.513026 CTTCTCCGGTCTGCTGGGTG 62.513 65.000 0.00 0.00 41.53 4.61
408 425 0.727398 CGTCTTCCAAATCGGCCTTC 59.273 55.000 0.00 0.00 33.14 3.46
421 438 1.079336 CGGGGAGGGTTTCGTCTTC 60.079 63.158 0.00 0.00 0.00 2.87
430 447 2.067197 CTGTTTTCTCGGGGAGGGT 58.933 57.895 0.00 0.00 0.00 4.34
457 496 2.110967 CAGGATGTTCCCAGCGCTG 61.111 63.158 30.52 30.52 37.19 5.18
466 505 0.179097 GAGAGGGCGTCAGGATGTTC 60.179 60.000 10.15 0.00 37.40 3.18
511 2668 2.235016 GTATGAGTTTTGTGGGTGGCA 58.765 47.619 0.00 0.00 0.00 4.92
513 2670 3.486383 ACTGTATGAGTTTTGTGGGTGG 58.514 45.455 0.00 0.00 0.00 4.61
577 2734 0.107654 AATCCTTACGTGCTGGCCTC 60.108 55.000 3.32 0.00 0.00 4.70
579 2736 1.583054 CTAATCCTTACGTGCTGGCC 58.417 55.000 0.00 0.00 0.00 5.36
627 2784 2.867109 AGATGTATATGGGCCTGCAC 57.133 50.000 4.53 0.00 0.00 4.57
632 2789 3.274288 GCTGCTTAGATGTATATGGGCC 58.726 50.000 0.00 0.00 0.00 5.80
659 2816 7.292713 TCGTGCCTGATGGTTAATACTATTA 57.707 36.000 0.00 0.00 35.27 0.98
708 2912 3.584406 TCCCAGAAATTGAGAGCTTCTGA 59.416 43.478 10.27 0.00 45.86 3.27
724 2928 4.220821 CACTACAGTTTCTAAGCTCCCAGA 59.779 45.833 0.00 0.00 0.00 3.86
728 2932 5.725362 ACATCACTACAGTTTCTAAGCTCC 58.275 41.667 0.00 0.00 0.00 4.70
736 2940 6.844696 TGTCTGAAACATCACTACAGTTTC 57.155 37.500 9.59 9.59 46.86 2.78
745 2949 4.051922 ACGAGTCTTGTCTGAAACATCAC 58.948 43.478 0.00 0.00 37.82 3.06
750 2954 2.201732 TGCACGAGTCTTGTCTGAAAC 58.798 47.619 0.00 0.00 0.00 2.78
752 2956 2.820059 ATGCACGAGTCTTGTCTGAA 57.180 45.000 0.00 0.00 0.00 3.02
753 2957 2.610479 GGAATGCACGAGTCTTGTCTGA 60.610 50.000 0.00 0.00 0.00 3.27
754 2958 1.728971 GGAATGCACGAGTCTTGTCTG 59.271 52.381 0.00 0.00 0.00 3.51
755 2959 1.620819 AGGAATGCACGAGTCTTGTCT 59.379 47.619 0.00 0.00 0.00 3.41
756 2960 1.996191 GAGGAATGCACGAGTCTTGTC 59.004 52.381 0.00 0.00 0.00 3.18
757 2961 1.620819 AGAGGAATGCACGAGTCTTGT 59.379 47.619 0.00 0.00 0.00 3.16
758 2962 1.998315 CAGAGGAATGCACGAGTCTTG 59.002 52.381 0.00 0.00 0.00 3.02
759 2963 1.895798 TCAGAGGAATGCACGAGTCTT 59.104 47.619 0.00 0.00 0.00 3.01
800 3011 1.794151 TTGCCAAGTGCCGTGATGTG 61.794 55.000 0.00 0.00 40.16 3.21
807 3018 4.093952 CGCTCTTGCCAAGTGCCG 62.094 66.667 21.85 14.58 43.20 5.69
865 3076 2.500646 GCTCTCTGCTCCTGCTCC 59.499 66.667 0.00 0.00 40.48 4.70
895 3107 0.178767 CAGTCCTCATTGATCGGCCA 59.821 55.000 2.24 0.00 0.00 5.36
909 3121 3.512680 CAAACTACTCGTCCATCAGTCC 58.487 50.000 0.00 0.00 0.00 3.85
913 3125 2.930887 GCTGCAAACTACTCGTCCATCA 60.931 50.000 0.00 0.00 0.00 3.07
955 3167 0.818296 AATCTGCGAGCGGTTAGACT 59.182 50.000 3.65 0.00 0.00 3.24
961 3173 2.125512 GTGGAATCTGCGAGCGGT 60.126 61.111 3.65 0.00 0.00 5.68
1059 3562 1.733041 CGACTGTGGCAACGATCGT 60.733 57.895 16.60 16.60 42.51 3.73
1421 3935 3.687102 TCCCATATACCGCCGGCG 61.687 66.667 41.00 41.00 39.44 6.46
1529 4055 1.755380 GGTAGAGTACTCCATTGGCGT 59.245 52.381 19.38 3.44 0.00 5.68
1604 4154 4.719273 TGTGGTGATACTGTGGGATCATAA 59.281 41.667 0.00 0.00 34.69 1.90
1670 4238 1.035932 AGGGGTCTACATCGTGTCCG 61.036 60.000 0.00 0.00 0.00 4.79
1748 4317 2.636893 CCTATCCTCCCAACATCCAGAG 59.363 54.545 0.00 0.00 0.00 3.35
1873 4454 3.334691 CTCATAACAAAACCAGCTCCGA 58.665 45.455 0.00 0.00 0.00 4.55
2297 4911 5.182760 AGTTGATGCTTCCTTGATGTCTTTC 59.817 40.000 0.00 0.00 0.00 2.62
2327 4944 5.351458 TCGTCAGAGTTCCATTCATGTATG 58.649 41.667 5.38 5.38 0.00 2.39
2381 4998 5.702670 TGTCTCCTTGCAACTCTCTTTATTG 59.297 40.000 0.00 0.00 0.00 1.90
2467 5087 1.694150 GATAGGCCAGTCCTGTATGCA 59.306 52.381 5.01 0.00 46.98 3.96
2597 5229 4.488879 GAAACTCTTCAATCCAACATGGC 58.511 43.478 0.00 0.00 37.47 4.40
2665 5297 4.588899 ACATGCAACTAAACATAGGCTCA 58.411 39.130 0.00 0.00 0.00 4.26
2667 5299 7.339212 TCAAATACATGCAACTAAACATAGGCT 59.661 33.333 0.00 0.00 0.00 4.58
2668 5300 7.479980 TCAAATACATGCAACTAAACATAGGC 58.520 34.615 0.00 0.00 0.00 3.93
2669 5301 7.645340 GCTCAAATACATGCAACTAAACATAGG 59.355 37.037 0.00 0.00 0.00 2.57
2670 5302 7.374228 CGCTCAAATACATGCAACTAAACATAG 59.626 37.037 0.00 0.00 0.00 2.23
2673 5305 5.389778 CGCTCAAATACATGCAACTAAACA 58.610 37.500 0.00 0.00 0.00 2.83
2674 5306 4.262976 GCGCTCAAATACATGCAACTAAAC 59.737 41.667 0.00 0.00 0.00 2.01
2675 5307 4.155826 AGCGCTCAAATACATGCAACTAAA 59.844 37.500 2.64 0.00 0.00 1.85
2676 5308 3.689161 AGCGCTCAAATACATGCAACTAA 59.311 39.130 2.64 0.00 0.00 2.24
2677 5309 3.063861 CAGCGCTCAAATACATGCAACTA 59.936 43.478 7.13 0.00 0.00 2.24
2678 5310 2.086869 AGCGCTCAAATACATGCAACT 58.913 42.857 2.64 0.00 0.00 3.16
2679 5311 2.179589 CAGCGCTCAAATACATGCAAC 58.820 47.619 7.13 0.00 0.00 4.17
2680 5312 1.132834 CCAGCGCTCAAATACATGCAA 59.867 47.619 7.13 0.00 0.00 4.08
2681 5313 0.734309 CCAGCGCTCAAATACATGCA 59.266 50.000 7.13 0.00 0.00 3.96
2682 5314 1.016627 TCCAGCGCTCAAATACATGC 58.983 50.000 7.13 0.00 0.00 4.06
2683 5315 2.938451 TCTTCCAGCGCTCAAATACATG 59.062 45.455 7.13 0.00 0.00 3.21
2684 5316 3.118629 TCTCTTCCAGCGCTCAAATACAT 60.119 43.478 7.13 0.00 0.00 2.29
2685 5317 2.233676 TCTCTTCCAGCGCTCAAATACA 59.766 45.455 7.13 0.00 0.00 2.29
2686 5318 2.893637 TCTCTTCCAGCGCTCAAATAC 58.106 47.619 7.13 0.00 0.00 1.89
2687 5319 3.461061 CATCTCTTCCAGCGCTCAAATA 58.539 45.455 7.13 0.00 0.00 1.40
2688 5320 2.286872 CATCTCTTCCAGCGCTCAAAT 58.713 47.619 7.13 0.00 0.00 2.32
2689 5321 1.676916 CCATCTCTTCCAGCGCTCAAA 60.677 52.381 7.13 3.50 0.00 2.69
2690 5322 0.107993 CCATCTCTTCCAGCGCTCAA 60.108 55.000 7.13 1.84 0.00 3.02
2691 5323 1.519246 CCATCTCTTCCAGCGCTCA 59.481 57.895 7.13 0.00 0.00 4.26
2694 5326 1.886777 GAGCCATCTCTTCCAGCGC 60.887 63.158 0.00 0.00 36.42 5.92
2698 5330 1.489481 ACATCGAGCCATCTCTTCCA 58.511 50.000 0.00 0.00 37.19 3.53
2770 5402 9.878667 TGACTCCGTTCAATAGTAAAATAATCA 57.121 29.630 0.00 0.00 0.00 2.57
2789 5421 7.596749 ACAAACAAATATAGTTCTGACTCCG 57.403 36.000 0.00 0.00 37.33 4.63
2823 5455 8.434661 GTCTTAAAAATTAACGTCCGACATACA 58.565 33.333 0.00 0.00 0.00 2.29
2829 5461 6.427547 ACCATGTCTTAAAAATTAACGTCCGA 59.572 34.615 0.00 0.00 0.00 4.55
2830 5462 6.521821 CACCATGTCTTAAAAATTAACGTCCG 59.478 38.462 0.00 0.00 0.00 4.79
2831 5463 6.804783 CCACCATGTCTTAAAAATTAACGTCC 59.195 38.462 0.00 0.00 0.00 4.79
2832 5464 6.307077 GCCACCATGTCTTAAAAATTAACGTC 59.693 38.462 0.00 0.00 0.00 4.34
2833 5465 6.153756 GCCACCATGTCTTAAAAATTAACGT 58.846 36.000 0.00 0.00 0.00 3.99
2834 5466 6.088883 GTGCCACCATGTCTTAAAAATTAACG 59.911 38.462 0.00 0.00 0.00 3.18
2835 5467 6.088883 CGTGCCACCATGTCTTAAAAATTAAC 59.911 38.462 0.00 0.00 0.00 2.01
2836 5468 6.153067 CGTGCCACCATGTCTTAAAAATTAA 58.847 36.000 0.00 0.00 0.00 1.40
2837 5469 5.704888 CGTGCCACCATGTCTTAAAAATTA 58.295 37.500 0.00 0.00 0.00 1.40
2838 5470 4.555262 CGTGCCACCATGTCTTAAAAATT 58.445 39.130 0.00 0.00 0.00 1.82
2839 5471 3.613910 GCGTGCCACCATGTCTTAAAAAT 60.614 43.478 0.00 0.00 0.00 1.82
2840 5472 2.287909 GCGTGCCACCATGTCTTAAAAA 60.288 45.455 0.00 0.00 0.00 1.94
2841 5473 1.268352 GCGTGCCACCATGTCTTAAAA 59.732 47.619 0.00 0.00 0.00 1.52
2842 5474 0.878416 GCGTGCCACCATGTCTTAAA 59.122 50.000 0.00 0.00 0.00 1.52
2843 5475 1.295357 CGCGTGCCACCATGTCTTAA 61.295 55.000 0.00 0.00 0.00 1.85
2844 5476 1.739929 CGCGTGCCACCATGTCTTA 60.740 57.895 0.00 0.00 0.00 2.10
2845 5477 3.049674 CGCGTGCCACCATGTCTT 61.050 61.111 0.00 0.00 0.00 3.01
2846 5478 3.939837 CTCGCGTGCCACCATGTCT 62.940 63.158 5.77 0.00 0.00 3.41
2847 5479 3.490759 CTCGCGTGCCACCATGTC 61.491 66.667 5.77 0.00 0.00 3.06
2849 5481 4.758251 TCCTCGCGTGCCACCATG 62.758 66.667 5.77 0.00 0.00 3.66
2850 5482 3.785859 ATCCTCGCGTGCCACCAT 61.786 61.111 5.77 0.00 0.00 3.55
2851 5483 4.758251 CATCCTCGCGTGCCACCA 62.758 66.667 5.77 0.00 0.00 4.17
2853 5485 2.644555 ATACCATCCTCGCGTGCCAC 62.645 60.000 5.77 0.00 0.00 5.01
2854 5486 2.363711 GATACCATCCTCGCGTGCCA 62.364 60.000 5.77 0.00 0.00 4.92
2855 5487 1.664965 GATACCATCCTCGCGTGCC 60.665 63.158 5.77 0.00 0.00 5.01
2856 5488 0.941463 CAGATACCATCCTCGCGTGC 60.941 60.000 5.77 0.00 0.00 5.34
2857 5489 0.668535 TCAGATACCATCCTCGCGTG 59.331 55.000 5.77 2.75 0.00 5.34
2858 5490 0.955178 CTCAGATACCATCCTCGCGT 59.045 55.000 5.77 0.00 0.00 6.01
2859 5491 0.387878 GCTCAGATACCATCCTCGCG 60.388 60.000 0.00 0.00 0.00 5.87
2860 5492 0.965439 AGCTCAGATACCATCCTCGC 59.035 55.000 0.00 0.00 0.00 5.03
2861 5493 1.959985 ACAGCTCAGATACCATCCTCG 59.040 52.381 0.00 0.00 0.00 4.63
2862 5494 2.298729 GGACAGCTCAGATACCATCCTC 59.701 54.545 0.00 0.00 0.00 3.71
2863 5495 2.324541 GGACAGCTCAGATACCATCCT 58.675 52.381 0.00 0.00 0.00 3.24
2864 5496 2.042464 TGGACAGCTCAGATACCATCC 58.958 52.381 0.00 0.00 0.00 3.51
2865 5497 3.924144 GATGGACAGCTCAGATACCATC 58.076 50.000 11.03 11.03 43.98 3.51
2866 5498 3.324268 CAGATGGACAGCTCAGATACCAT 59.676 47.826 0.00 0.00 40.21 3.55
2867 5499 2.697229 CAGATGGACAGCTCAGATACCA 59.303 50.000 0.00 0.00 0.00 3.25
2868 5500 2.697751 ACAGATGGACAGCTCAGATACC 59.302 50.000 0.00 0.00 0.00 2.73
2869 5501 3.715495 CACAGATGGACAGCTCAGATAC 58.285 50.000 0.00 0.00 0.00 2.24
2870 5502 2.102084 GCACAGATGGACAGCTCAGATA 59.898 50.000 0.00 0.00 0.00 1.98
2871 5503 1.134461 GCACAGATGGACAGCTCAGAT 60.134 52.381 0.00 0.00 0.00 2.90
2872 5504 0.248565 GCACAGATGGACAGCTCAGA 59.751 55.000 0.00 0.00 0.00 3.27
2873 5505 0.249676 AGCACAGATGGACAGCTCAG 59.750 55.000 0.00 0.00 0.00 3.35
2874 5506 1.560505 TAGCACAGATGGACAGCTCA 58.439 50.000 0.00 0.00 36.80 4.26
2875 5507 2.102084 TCATAGCACAGATGGACAGCTC 59.898 50.000 0.00 0.00 36.80 4.09
2876 5508 2.102757 CTCATAGCACAGATGGACAGCT 59.897 50.000 0.00 0.00 39.22 4.24
2877 5509 2.102084 TCTCATAGCACAGATGGACAGC 59.898 50.000 0.00 0.00 0.00 4.40
2878 5510 4.603989 ATCTCATAGCACAGATGGACAG 57.396 45.455 0.00 0.00 0.00 3.51
2879 5511 5.510349 GCTAATCTCATAGCACAGATGGACA 60.510 44.000 1.64 0.00 46.06 4.02
2880 5512 4.928615 GCTAATCTCATAGCACAGATGGAC 59.071 45.833 1.64 0.00 46.06 4.02
2881 5513 5.144692 GCTAATCTCATAGCACAGATGGA 57.855 43.478 1.64 0.00 46.06 3.41
2920 5552 9.825109 TCCATCGTATGACTTTTGTATTCAATA 57.175 29.630 0.00 0.00 33.32 1.90
2921 5553 8.731275 TCCATCGTATGACTTTTGTATTCAAT 57.269 30.769 0.00 0.00 33.32 2.57
2922 5554 8.731275 ATCCATCGTATGACTTTTGTATTCAA 57.269 30.769 0.00 0.00 0.00 2.69
2923 5555 8.731275 AATCCATCGTATGACTTTTGTATTCA 57.269 30.769 0.00 0.00 0.00 2.57
2928 5560 9.787532 CAAATAAATCCATCGTATGACTTTTGT 57.212 29.630 0.00 0.00 0.00 2.83
2929 5561 8.745837 GCAAATAAATCCATCGTATGACTTTTG 58.254 33.333 0.00 0.00 0.00 2.44
2930 5562 8.465999 TGCAAATAAATCCATCGTATGACTTTT 58.534 29.630 0.00 0.00 0.00 2.27
2931 5563 7.995289 TGCAAATAAATCCATCGTATGACTTT 58.005 30.769 0.00 0.00 0.00 2.66
2932 5564 7.498900 TCTGCAAATAAATCCATCGTATGACTT 59.501 33.333 0.00 0.00 0.00 3.01
2933 5565 6.992123 TCTGCAAATAAATCCATCGTATGACT 59.008 34.615 0.00 0.00 0.00 3.41
2934 5566 7.189693 TCTGCAAATAAATCCATCGTATGAC 57.810 36.000 0.00 0.00 0.00 3.06
2935 5567 7.800155 TTCTGCAAATAAATCCATCGTATGA 57.200 32.000 0.00 0.00 0.00 2.15
2936 5568 9.546909 GTATTCTGCAAATAAATCCATCGTATG 57.453 33.333 0.00 0.00 0.00 2.39
2937 5569 9.283768 TGTATTCTGCAAATAAATCCATCGTAT 57.716 29.630 0.00 0.00 0.00 3.06
2938 5570 8.556194 GTGTATTCTGCAAATAAATCCATCGTA 58.444 33.333 0.00 0.00 0.00 3.43
2939 5571 7.066887 TGTGTATTCTGCAAATAAATCCATCGT 59.933 33.333 0.00 0.00 0.00 3.73
2940 5572 7.416817 TGTGTATTCTGCAAATAAATCCATCG 58.583 34.615 0.00 0.00 0.00 3.84
2941 5573 9.403110 GATGTGTATTCTGCAAATAAATCCATC 57.597 33.333 0.00 0.00 0.00 3.51
2942 5574 9.139734 AGATGTGTATTCTGCAAATAAATCCAT 57.860 29.630 0.00 0.00 0.00 3.41
2943 5575 8.407832 CAGATGTGTATTCTGCAAATAAATCCA 58.592 33.333 0.00 0.00 34.68 3.41
2944 5576 8.408601 ACAGATGTGTATTCTGCAAATAAATCC 58.591 33.333 0.00 0.00 43.57 3.01
2945 5577 9.229784 CACAGATGTGTATTCTGCAAATAAATC 57.770 33.333 4.77 1.41 43.57 2.17
2946 5578 8.959548 TCACAGATGTGTATTCTGCAAATAAAT 58.040 29.630 12.43 0.00 43.57 1.40
2947 5579 8.334263 TCACAGATGTGTATTCTGCAAATAAA 57.666 30.769 12.43 0.00 43.57 1.40
2948 5580 7.920160 TCACAGATGTGTATTCTGCAAATAA 57.080 32.000 12.43 0.00 43.57 1.40
2949 5581 7.467675 GCATCACAGATGTGTATTCTGCAAATA 60.468 37.037 12.43 0.00 43.57 1.40
2950 5582 6.679638 GCATCACAGATGTGTATTCTGCAAAT 60.680 38.462 12.43 0.00 43.57 2.32
2951 5583 5.392272 GCATCACAGATGTGTATTCTGCAAA 60.392 40.000 12.43 0.00 43.57 3.68
2952 5584 4.095334 GCATCACAGATGTGTATTCTGCAA 59.905 41.667 12.43 0.00 43.57 4.08
2953 5585 3.624410 GCATCACAGATGTGTATTCTGCA 59.376 43.478 12.43 0.00 43.57 4.41
2954 5586 3.302935 CGCATCACAGATGTGTATTCTGC 60.303 47.826 12.43 12.51 43.57 4.26
2955 5587 3.867493 ACGCATCACAGATGTGTATTCTG 59.133 43.478 20.80 0.00 45.76 3.02
2956 5588 3.867493 CACGCATCACAGATGTGTATTCT 59.133 43.478 21.46 1.35 45.76 2.40
2957 5589 3.865164 TCACGCATCACAGATGTGTATTC 59.135 43.478 21.46 0.00 45.76 1.75
2958 5590 3.860641 TCACGCATCACAGATGTGTATT 58.139 40.909 21.46 1.98 45.76 1.89
2959 5591 3.525268 TCACGCATCACAGATGTGTAT 57.475 42.857 21.46 2.61 45.76 2.29
2960 5592 3.253230 CTTCACGCATCACAGATGTGTA 58.747 45.455 21.46 9.91 45.76 2.90
2961 5593 2.071540 CTTCACGCATCACAGATGTGT 58.928 47.619 17.65 17.65 45.76 3.72
2962 5594 2.071540 ACTTCACGCATCACAGATGTG 58.928 47.619 16.49 16.49 46.91 3.21
2963 5595 2.462456 ACTTCACGCATCACAGATGT 57.538 45.000 8.60 0.00 0.00 3.06
2964 5596 2.279921 CGTACTTCACGCATCACAGATG 59.720 50.000 2.71 2.71 45.03 2.90
2965 5597 2.530177 CGTACTTCACGCATCACAGAT 58.470 47.619 0.00 0.00 45.03 2.90
2966 5598 1.977188 CGTACTTCACGCATCACAGA 58.023 50.000 0.00 0.00 45.03 3.41
2976 5608 2.132762 CACTCAACCCACGTACTTCAC 58.867 52.381 0.00 0.00 0.00 3.18
2977 5609 2.033372 TCACTCAACCCACGTACTTCA 58.967 47.619 0.00 0.00 0.00 3.02
2978 5610 2.401351 GTCACTCAACCCACGTACTTC 58.599 52.381 0.00 0.00 0.00 3.01
2979 5611 1.069668 GGTCACTCAACCCACGTACTT 59.930 52.381 0.00 0.00 32.82 2.24
2980 5612 0.677842 GGTCACTCAACCCACGTACT 59.322 55.000 0.00 0.00 32.82 2.73
2981 5613 0.677842 AGGTCACTCAACCCACGTAC 59.322 55.000 0.00 0.00 40.42 3.67
2982 5614 0.963962 GAGGTCACTCAACCCACGTA 59.036 55.000 0.00 0.00 43.41 3.57
2983 5615 1.746517 GAGGTCACTCAACCCACGT 59.253 57.895 0.00 0.00 43.41 4.49
2984 5616 4.675404 GAGGTCACTCAACCCACG 57.325 61.111 0.00 0.00 43.41 4.94
2992 5624 3.055094 TGCCCTTTAAGATGAGGTCACTC 60.055 47.826 0.00 0.00 44.23 3.51
2993 5625 2.912956 TGCCCTTTAAGATGAGGTCACT 59.087 45.455 0.00 0.00 0.00 3.41
2994 5626 3.010420 GTGCCCTTTAAGATGAGGTCAC 58.990 50.000 0.00 0.00 0.00 3.67
2995 5627 2.912956 AGTGCCCTTTAAGATGAGGTCA 59.087 45.455 0.00 0.00 0.00 4.02
2996 5628 3.055094 TCAGTGCCCTTTAAGATGAGGTC 60.055 47.826 0.00 0.00 0.00 3.85
2997 5629 2.912956 TCAGTGCCCTTTAAGATGAGGT 59.087 45.455 0.00 0.00 0.00 3.85
2998 5630 3.634397 TCAGTGCCCTTTAAGATGAGG 57.366 47.619 0.00 0.00 0.00 3.86
2999 5631 4.815308 CAGATCAGTGCCCTTTAAGATGAG 59.185 45.833 0.00 0.00 0.00 2.90
3000 5632 4.225942 ACAGATCAGTGCCCTTTAAGATGA 59.774 41.667 0.00 0.00 0.00 2.92
3001 5633 4.334759 CACAGATCAGTGCCCTTTAAGATG 59.665 45.833 5.22 0.00 32.04 2.90
3002 5634 4.521146 CACAGATCAGTGCCCTTTAAGAT 58.479 43.478 5.22 0.00 32.04 2.40
3003 5635 3.942829 CACAGATCAGTGCCCTTTAAGA 58.057 45.455 5.22 0.00 32.04 2.10
3501 6457 4.810491 GTGTGACATTTTTGCTTCAACCAT 59.190 37.500 0.00 0.00 0.00 3.55
3502 6458 4.180057 GTGTGACATTTTTGCTTCAACCA 58.820 39.130 0.00 0.00 0.00 3.67
3503 6459 3.242712 CGTGTGACATTTTTGCTTCAACC 59.757 43.478 0.00 0.00 0.00 3.77
3504 6460 3.242712 CCGTGTGACATTTTTGCTTCAAC 59.757 43.478 0.00 0.00 0.00 3.18
3505 6461 3.119316 ACCGTGTGACATTTTTGCTTCAA 60.119 39.130 0.00 0.00 0.00 2.69
3506 6462 2.425312 ACCGTGTGACATTTTTGCTTCA 59.575 40.909 0.00 0.00 0.00 3.02
3507 6463 2.788786 CACCGTGTGACATTTTTGCTTC 59.211 45.455 0.00 0.00 35.23 3.86
3508 6464 2.481104 CCACCGTGTGACATTTTTGCTT 60.481 45.455 5.71 0.00 35.23 3.91
3509 6465 1.066908 CCACCGTGTGACATTTTTGCT 59.933 47.619 5.71 0.00 35.23 3.91
3510 6466 1.202359 ACCACCGTGTGACATTTTTGC 60.202 47.619 5.71 0.00 35.23 3.68
3511 6467 2.861462 ACCACCGTGTGACATTTTTG 57.139 45.000 5.71 0.00 35.23 2.44
3512 6468 2.292292 GCTACCACCGTGTGACATTTTT 59.708 45.455 5.71 0.00 35.23 1.94
3513 6469 1.877443 GCTACCACCGTGTGACATTTT 59.123 47.619 5.71 0.00 35.23 1.82
3514 6470 1.202710 TGCTACCACCGTGTGACATTT 60.203 47.619 5.71 0.00 35.23 2.32
3515 6471 0.394938 TGCTACCACCGTGTGACATT 59.605 50.000 5.71 0.00 35.23 2.71
3516 6472 0.394938 TTGCTACCACCGTGTGACAT 59.605 50.000 5.71 0.00 35.23 3.06
3517 6473 0.178301 TTTGCTACCACCGTGTGACA 59.822 50.000 5.71 0.00 35.23 3.58
3518 6474 1.301423 TTTTGCTACCACCGTGTGAC 58.699 50.000 5.71 0.00 35.23 3.67
3519 6475 1.944024 CTTTTTGCTACCACCGTGTGA 59.056 47.619 5.71 0.00 35.23 3.58
3520 6476 1.944024 TCTTTTTGCTACCACCGTGTG 59.056 47.619 0.00 0.00 0.00 3.82
3731 6688 1.039856 AAAAAGCTGCAACCGGTGAT 58.960 45.000 8.52 0.00 0.00 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.