Multiple sequence alignment - TraesCS5D01G072700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G072700 chr5D 100.000 3031 0 0 1 3031 72222648 72225678 0.000000e+00 5598.0
1 TraesCS5D01G072700 chr5A 90.914 1981 59 34 446 2366 64761551 64763470 0.000000e+00 2549.0
2 TraesCS5D01G072700 chr5A 91.786 280 5 8 1 262 64761262 64761541 1.030000e-99 374.0
3 TraesCS5D01G072700 chr5A 94.595 222 11 1 2358 2578 64764230 64764451 2.890000e-90 342.0
4 TraesCS5D01G072700 chr5B 93.302 1478 46 21 762 2210 82213770 82212317 0.000000e+00 2132.0
5 TraesCS5D01G072700 chr5B 97.610 251 5 1 10 260 82214817 82214568 2.160000e-116 429.0
6 TraesCS5D01G072700 chr5B 95.539 269 6 1 446 708 82214555 82214287 2.790000e-115 425.0
7 TraesCS5D01G072700 chr5B 93.269 208 13 1 2506 2712 82211623 82211416 3.800000e-79 305.0
8 TraesCS5D01G072700 chr5B 94.536 183 7 2 2328 2507 82212020 82211838 2.300000e-71 279.0
9 TraesCS5D01G072700 chr5B 92.398 171 8 2 2235 2405 82212174 82212009 3.910000e-59 239.0
10 TraesCS5D01G072700 chr4D 85.930 796 71 13 1918 2700 491457680 491456913 0.000000e+00 811.0
11 TraesCS5D01G072700 chr4D 91.111 180 14 2 269 448 29645726 29645903 3.020000e-60 243.0
12 TraesCS5D01G072700 chr4D 89.375 160 14 3 287 445 370530158 370530001 6.630000e-47 198.0
13 TraesCS5D01G072700 chr4D 83.182 220 18 8 1426 1632 491459433 491459220 1.860000e-42 183.0
14 TraesCS5D01G072700 chr4D 75.731 342 50 22 1036 1373 491508178 491507866 1.130000e-29 141.0
15 TraesCS5D01G072700 chr4D 83.439 157 16 7 1881 2033 491467155 491467005 1.470000e-28 137.0
16 TraesCS5D01G072700 chr4D 96.774 62 2 0 1730 1791 491507020 491506959 1.490000e-18 104.0
17 TraesCS5D01G072700 chr4D 93.750 64 4 0 67 130 491461271 491461208 2.490000e-16 97.1
18 TraesCS5D01G072700 chr4D 96.552 58 2 0 1540 1597 491507703 491507646 2.490000e-16 97.1
19 TraesCS5D01G072700 chrUn 84.251 781 80 18 1950 2712 29471125 29470370 0.000000e+00 721.0
20 TraesCS5D01G072700 chr2D 94.180 189 10 1 262 449 627580959 627581147 1.380000e-73 287.0
21 TraesCS5D01G072700 chr2D 89.894 188 16 2 262 447 116836234 116836420 3.910000e-59 239.0
22 TraesCS5D01G072700 chr2D 88.710 186 10 3 262 446 12588341 12588516 1.830000e-52 217.0
23 TraesCS5D01G072700 chr7D 96.491 171 1 3 2710 2875 73153751 73153921 8.280000e-71 278.0
24 TraesCS5D01G072700 chr7D 95.882 170 3 3 2710 2875 392624300 392624131 3.850000e-69 272.0
25 TraesCS5D01G072700 chr7D 95.906 171 2 2 2710 2875 601491389 601491219 3.850000e-69 272.0
26 TraesCS5D01G072700 chr7D 90.270 185 18 0 262 446 590127061 590126877 3.020000e-60 243.0
27 TraesCS5D01G072700 chr7D 88.360 189 19 3 262 449 181839027 181839213 1.090000e-54 224.0
28 TraesCS5D01G072700 chr1D 96.450 169 3 2 2710 2875 28073085 28073253 2.980000e-70 276.0
29 TraesCS5D01G072700 chr1D 96.450 169 3 2 2710 2875 318198055 318198223 2.980000e-70 276.0
30 TraesCS5D01G072700 chr2B 95.906 171 3 2 2710 2876 543314779 543314949 1.070000e-69 274.0
31 TraesCS5D01G072700 chr6B 95.882 170 4 2 2710 2876 691630781 691630950 3.850000e-69 272.0
32 TraesCS5D01G072700 chr3D 95.906 171 2 2 2710 2875 89921894 89921724 3.850000e-69 272.0
33 TraesCS5D01G072700 chr3D 94.444 180 5 2 2710 2884 136261892 136261713 3.850000e-69 272.0
34 TraesCS5D01G072700 chr3D 90.000 160 13 3 287 446 6527225 6527069 1.420000e-48 204.0
35 TraesCS5D01G072700 chr6D 87.634 186 12 2 262 446 22072538 22072713 3.960000e-49 206.0
36 TraesCS5D01G072700 chr4B 77.305 282 22 18 450 689 673237338 673237619 8.820000e-26 128.0
37 TraesCS5D01G072700 chr4B 91.765 85 7 0 1540 1624 673238483 673238567 5.310000e-23 119.0
38 TraesCS5D01G072700 chr4B 74.451 364 37 31 1730 2047 673238705 673239058 4.130000e-19 106.0
39 TraesCS5D01G072700 chr3A 96.774 62 2 0 1730 1791 703646972 703646911 1.490000e-18 104.0
40 TraesCS5D01G072700 chr3A 90.909 77 3 2 67 139 703648213 703648137 1.920000e-17 100.0
41 TraesCS5D01G072700 chr3A 76.172 256 20 15 461 692 703648009 703647771 2.490000e-16 97.1
42 TraesCS5D01G072700 chr7A 75.391 256 28 22 462 684 582214160 582213907 1.160000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G072700 chr5D 72222648 72225678 3030 False 5598.000000 5598 100.000000 1 3031 1 chr5D.!!$F1 3030
1 TraesCS5D01G072700 chr5A 64761262 64764451 3189 False 1088.333333 2549 92.431667 1 2578 3 chr5A.!!$F1 2577
2 TraesCS5D01G072700 chr5B 82211416 82214817 3401 True 634.833333 2132 94.442333 10 2712 6 chr5B.!!$R1 2702
3 TraesCS5D01G072700 chr4D 491456913 491461271 4358 True 363.700000 811 87.620667 67 2700 3 chr4D.!!$R3 2633
4 TraesCS5D01G072700 chrUn 29470370 29471125 755 True 721.000000 721 84.251000 1950 2712 1 chrUn.!!$R1 762

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
443 507 0.105913 TTCCTGGAACCAAACACCCC 60.106 55.0 4.68 0.0 0.0 4.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2375 6268 0.986527 TCTGAGCAGAGGCCAATTGA 59.013 50.0 5.01 0.0 42.56 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
269 333 4.426313 CCGGCCCCCTTGGTTCTC 62.426 72.222 0.00 0.00 36.04 2.87
271 335 1.993391 CGGCCCCCTTGGTTCTCTA 60.993 63.158 0.00 0.00 36.04 2.43
272 336 1.915983 GGCCCCCTTGGTTCTCTAG 59.084 63.158 0.00 0.00 36.04 2.43
273 337 0.914902 GGCCCCCTTGGTTCTCTAGT 60.915 60.000 0.00 0.00 36.04 2.57
274 338 0.992695 GCCCCCTTGGTTCTCTAGTT 59.007 55.000 0.00 0.00 36.04 2.24
275 339 1.065345 GCCCCCTTGGTTCTCTAGTTC 60.065 57.143 0.00 0.00 36.04 3.01
276 340 2.552367 CCCCCTTGGTTCTCTAGTTCT 58.448 52.381 0.00 0.00 0.00 3.01
277 341 3.721021 CCCCCTTGGTTCTCTAGTTCTA 58.279 50.000 0.00 0.00 0.00 2.10
278 342 3.707102 CCCCCTTGGTTCTCTAGTTCTAG 59.293 52.174 0.83 0.83 0.00 2.43
279 343 3.707102 CCCCTTGGTTCTCTAGTTCTAGG 59.293 52.174 6.96 0.00 0.00 3.02
280 344 4.572223 CCCCTTGGTTCTCTAGTTCTAGGA 60.572 50.000 6.96 1.76 0.00 2.94
281 345 4.403113 CCCTTGGTTCTCTAGTTCTAGGAC 59.597 50.000 6.96 0.00 0.00 3.85
282 346 5.265989 CCTTGGTTCTCTAGTTCTAGGACT 58.734 45.833 9.15 9.15 0.00 3.85
283 347 5.717654 CCTTGGTTCTCTAGTTCTAGGACTT 59.282 44.000 9.53 0.00 0.00 3.01
284 348 6.211785 CCTTGGTTCTCTAGTTCTAGGACTTT 59.788 42.308 9.53 0.00 0.00 2.66
285 349 7.256368 CCTTGGTTCTCTAGTTCTAGGACTTTT 60.256 40.741 9.53 0.00 0.00 2.27
286 350 7.613551 TGGTTCTCTAGTTCTAGGACTTTTT 57.386 36.000 9.53 0.00 0.00 1.94
287 351 7.668492 TGGTTCTCTAGTTCTAGGACTTTTTC 58.332 38.462 9.53 0.00 0.00 2.29
288 352 7.509659 TGGTTCTCTAGTTCTAGGACTTTTTCT 59.490 37.037 9.53 0.00 0.00 2.52
289 353 9.022884 GGTTCTCTAGTTCTAGGACTTTTTCTA 57.977 37.037 9.53 0.00 0.00 2.10
291 355 9.810870 TTCTCTAGTTCTAGGACTTTTTCTAGT 57.189 33.333 9.53 0.00 35.65 2.57
292 356 9.452287 TCTCTAGTTCTAGGACTTTTTCTAGTC 57.548 37.037 9.53 0.00 43.05 2.59
329 393 4.363991 AAAAGACTCTCAAGGTGATGCT 57.636 40.909 0.00 0.00 0.00 3.79
330 394 4.363991 AAAGACTCTCAAGGTGATGCTT 57.636 40.909 0.00 0.00 0.00 3.91
331 395 3.608316 AGACTCTCAAGGTGATGCTTC 57.392 47.619 0.00 0.00 0.00 3.86
332 396 3.172339 AGACTCTCAAGGTGATGCTTCT 58.828 45.455 0.88 0.00 0.00 2.85
333 397 4.348486 AGACTCTCAAGGTGATGCTTCTA 58.652 43.478 0.88 0.00 0.00 2.10
334 398 4.774726 AGACTCTCAAGGTGATGCTTCTAA 59.225 41.667 0.88 0.00 0.00 2.10
335 399 5.083533 ACTCTCAAGGTGATGCTTCTAAG 57.916 43.478 0.88 0.00 0.00 2.18
336 400 4.081198 ACTCTCAAGGTGATGCTTCTAAGG 60.081 45.833 0.88 0.00 0.00 2.69
337 401 4.096681 TCTCAAGGTGATGCTTCTAAGGA 58.903 43.478 0.88 0.00 0.00 3.36
338 402 4.718774 TCTCAAGGTGATGCTTCTAAGGAT 59.281 41.667 0.00 0.00 39.97 3.24
339 403 5.190528 TCTCAAGGTGATGCTTCTAAGGATT 59.809 40.000 0.88 0.00 37.20 3.01
340 404 5.819991 TCAAGGTGATGCTTCTAAGGATTT 58.180 37.500 0.88 0.00 37.20 2.17
341 405 6.248433 TCAAGGTGATGCTTCTAAGGATTTT 58.752 36.000 0.88 0.00 37.20 1.82
342 406 6.721208 TCAAGGTGATGCTTCTAAGGATTTTT 59.279 34.615 0.88 0.00 37.20 1.94
343 407 7.888021 TCAAGGTGATGCTTCTAAGGATTTTTA 59.112 33.333 0.88 0.00 37.20 1.52
344 408 7.872113 AGGTGATGCTTCTAAGGATTTTTAG 57.128 36.000 0.88 0.00 37.20 1.85
345 409 6.319911 AGGTGATGCTTCTAAGGATTTTTAGC 59.680 38.462 0.88 0.00 37.20 3.09
346 410 6.095440 GGTGATGCTTCTAAGGATTTTTAGCA 59.905 38.462 0.00 0.00 37.20 3.49
347 411 7.362920 GGTGATGCTTCTAAGGATTTTTAGCAA 60.363 37.037 0.00 0.00 40.14 3.91
348 412 8.028938 GTGATGCTTCTAAGGATTTTTAGCAAA 58.971 33.333 0.00 0.00 40.14 3.68
349 413 8.584157 TGATGCTTCTAAGGATTTTTAGCAAAA 58.416 29.630 0.00 0.00 40.14 2.44
350 414 9.423061 GATGCTTCTAAGGATTTTTAGCAAAAA 57.577 29.630 0.00 8.54 43.76 1.94
351 415 8.816640 TGCTTCTAAGGATTTTTAGCAAAAAG 57.183 30.769 10.88 0.00 42.97 2.27
352 416 8.421002 TGCTTCTAAGGATTTTTAGCAAAAAGT 58.579 29.630 10.88 0.00 42.97 2.66
353 417 8.916654 GCTTCTAAGGATTTTTAGCAAAAAGTC 58.083 33.333 10.88 0.42 42.97 3.01
356 420 9.349713 TCTAAGGATTTTTAGCAAAAAGTCTCA 57.650 29.630 10.88 0.83 42.97 3.27
357 421 9.965824 CTAAGGATTTTTAGCAAAAAGTCTCAA 57.034 29.630 10.88 4.94 42.97 3.02
359 423 9.665719 AAGGATTTTTAGCAAAAAGTCTCAAAA 57.334 25.926 10.88 0.00 42.97 2.44
360 424 9.665719 AGGATTTTTAGCAAAAAGTCTCAAAAA 57.334 25.926 10.88 0.00 42.97 1.94
380 444 5.560722 AAAAGTCCCCCTTATTTGGTTTG 57.439 39.130 0.00 0.00 31.48 2.93
381 445 2.536066 AGTCCCCCTTATTTGGTTTGC 58.464 47.619 0.00 0.00 0.00 3.68
382 446 2.111792 AGTCCCCCTTATTTGGTTTGCT 59.888 45.455 0.00 0.00 0.00 3.91
383 447 3.335484 AGTCCCCCTTATTTGGTTTGCTA 59.665 43.478 0.00 0.00 0.00 3.49
384 448 3.699538 GTCCCCCTTATTTGGTTTGCTAG 59.300 47.826 0.00 0.00 0.00 3.42
385 449 3.031013 CCCCCTTATTTGGTTTGCTAGG 58.969 50.000 0.00 0.00 0.00 3.02
386 450 3.031013 CCCCTTATTTGGTTTGCTAGGG 58.969 50.000 0.00 0.00 40.44 3.53
387 451 3.309556 CCCCTTATTTGGTTTGCTAGGGA 60.310 47.826 0.00 0.00 42.82 4.20
388 452 3.699538 CCCTTATTTGGTTTGCTAGGGAC 59.300 47.826 0.00 0.00 42.82 4.46
389 453 4.569865 CCCTTATTTGGTTTGCTAGGGACT 60.570 45.833 0.00 0.00 42.82 3.85
390 454 5.016831 CCTTATTTGGTTTGCTAGGGACTT 58.983 41.667 0.00 0.00 41.75 3.01
391 455 5.480422 CCTTATTTGGTTTGCTAGGGACTTT 59.520 40.000 0.00 0.00 41.75 2.66
392 456 6.014584 CCTTATTTGGTTTGCTAGGGACTTTT 60.015 38.462 0.00 0.00 41.75 2.27
393 457 7.177744 CCTTATTTGGTTTGCTAGGGACTTTTA 59.822 37.037 0.00 0.00 41.75 1.52
394 458 6.590234 ATTTGGTTTGCTAGGGACTTTTAG 57.410 37.500 0.00 0.00 41.75 1.85
395 459 4.028993 TGGTTTGCTAGGGACTTTTAGG 57.971 45.455 0.00 0.00 41.75 2.69
396 460 3.245122 TGGTTTGCTAGGGACTTTTAGGG 60.245 47.826 0.00 0.00 41.75 3.53
397 461 3.009805 GGTTTGCTAGGGACTTTTAGGGA 59.990 47.826 0.00 0.00 41.75 4.20
398 462 3.994931 TTGCTAGGGACTTTTAGGGAC 57.005 47.619 0.00 0.00 41.75 4.46
399 463 3.200958 TGCTAGGGACTTTTAGGGACT 57.799 47.619 0.00 0.00 41.75 3.85
400 464 3.527937 TGCTAGGGACTTTTAGGGACTT 58.472 45.455 0.00 0.00 39.49 3.01
401 465 3.914435 TGCTAGGGACTTTTAGGGACTTT 59.086 43.478 0.00 0.00 39.49 2.66
402 466 4.352893 TGCTAGGGACTTTTAGGGACTTTT 59.647 41.667 0.00 0.00 39.49 2.27
403 467 5.163023 TGCTAGGGACTTTTAGGGACTTTTT 60.163 40.000 0.00 0.00 39.49 1.94
424 488 6.844097 TTTTTAGTCCCAACACAGAAAAGT 57.156 33.333 0.00 0.00 0.00 2.66
425 489 6.844097 TTTTAGTCCCAACACAGAAAAGTT 57.156 33.333 0.00 0.00 0.00 2.66
426 490 6.445357 TTTAGTCCCAACACAGAAAAGTTC 57.555 37.500 0.00 0.00 0.00 3.01
427 491 3.288092 AGTCCCAACACAGAAAAGTTCC 58.712 45.455 0.00 0.00 0.00 3.62
428 492 3.053619 AGTCCCAACACAGAAAAGTTCCT 60.054 43.478 0.00 0.00 0.00 3.36
429 493 3.066760 GTCCCAACACAGAAAAGTTCCTG 59.933 47.826 4.28 4.28 36.53 3.86
430 494 2.362077 CCCAACACAGAAAAGTTCCTGG 59.638 50.000 9.25 0.00 34.85 4.45
431 495 3.287222 CCAACACAGAAAAGTTCCTGGA 58.713 45.455 0.00 0.00 34.85 3.86
432 496 3.699038 CCAACACAGAAAAGTTCCTGGAA 59.301 43.478 4.68 4.68 34.85 3.53
433 497 4.440112 CCAACACAGAAAAGTTCCTGGAAC 60.440 45.833 28.11 28.11 42.25 3.62
434 498 3.288092 ACACAGAAAAGTTCCTGGAACC 58.712 45.455 30.69 18.03 42.85 3.62
435 499 3.287222 CACAGAAAAGTTCCTGGAACCA 58.713 45.455 30.69 0.00 42.85 3.67
436 500 3.699038 CACAGAAAAGTTCCTGGAACCAA 59.301 43.478 30.69 0.00 42.85 3.67
437 501 4.159506 CACAGAAAAGTTCCTGGAACCAAA 59.840 41.667 30.69 0.00 42.85 3.28
438 502 4.159693 ACAGAAAAGTTCCTGGAACCAAAC 59.840 41.667 30.69 20.80 42.85 2.93
439 503 4.159506 CAGAAAAGTTCCTGGAACCAAACA 59.840 41.667 30.69 0.00 42.85 2.83
440 504 4.159693 AGAAAAGTTCCTGGAACCAAACAC 59.840 41.667 30.69 18.77 42.85 3.32
441 505 2.067365 AGTTCCTGGAACCAAACACC 57.933 50.000 30.69 8.42 42.85 4.16
442 506 1.037493 GTTCCTGGAACCAAACACCC 58.963 55.000 25.74 0.44 36.65 4.61
443 507 0.105913 TTCCTGGAACCAAACACCCC 60.106 55.000 4.68 0.00 0.00 4.95
444 508 1.533033 CCTGGAACCAAACACCCCC 60.533 63.158 0.00 0.00 0.00 5.40
456 520 5.045359 ACCAAACACCCCCTAAATACTACTC 60.045 44.000 0.00 0.00 0.00 2.59
511 575 4.019174 CTGCATGTTCCCAAATTAGGACT 58.981 43.478 0.00 0.00 31.50 3.85
531 601 0.318762 GGGTCACTCACTCACTCACC 59.681 60.000 0.00 0.00 0.00 4.02
578 648 3.966215 CGAACCAGTCGGCAACAT 58.034 55.556 0.00 0.00 46.45 2.71
708 778 1.971505 GAGGCCACACATCCATCGGA 61.972 60.000 5.01 0.00 35.55 4.55
1129 1687 0.528924 CATGGTCCGTTCGTCCACTA 59.471 55.000 8.03 0.00 33.91 2.74
1159 1722 5.836705 TCCTCTGCTCTCCTATATATGCTT 58.163 41.667 0.00 0.00 0.00 3.91
1176 2533 4.558538 TGCTTTGCTCTCTTTTCTGTTC 57.441 40.909 0.00 0.00 0.00 3.18
1198 2558 9.896645 TGTTCTCTTCTGCTAGATGATATTTTT 57.103 29.630 0.00 0.00 29.56 1.94
1388 2776 1.205893 AGTTCATCTTCCTCTGGACGC 59.794 52.381 0.00 0.00 0.00 5.19
1603 3017 1.226323 CGACGTTGGAGCCTACGAG 60.226 63.158 25.59 16.25 45.10 4.18
1655 3097 3.325135 TCTCTTCTTCCTTCAACAGTCCC 59.675 47.826 0.00 0.00 0.00 4.46
1657 3099 3.716872 TCTTCTTCCTTCAACAGTCCCTT 59.283 43.478 0.00 0.00 0.00 3.95
1662 3110 7.510675 TCTTCCTTCAACAGTCCCTTTATAT 57.489 36.000 0.00 0.00 0.00 0.86
1849 3413 1.351153 GTTCTTACCGAGCAGAGCAC 58.649 55.000 0.00 0.00 0.00 4.40
1850 3414 1.067495 GTTCTTACCGAGCAGAGCACT 60.067 52.381 0.00 0.00 0.00 4.40
1851 3415 2.124277 TCTTACCGAGCAGAGCACTA 57.876 50.000 0.00 0.00 0.00 2.74
1853 3417 1.746220 CTTACCGAGCAGAGCACTACT 59.254 52.381 0.00 0.00 0.00 2.57
1877 3446 7.548075 ACTCTACTTATTTATTGTTCACCACCG 59.452 37.037 0.00 0.00 0.00 4.94
1994 4972 2.896443 CGCTCCTCCAAGTCCTCC 59.104 66.667 0.00 0.00 0.00 4.30
2064 5051 2.830104 TGATCTTCGCATGTGGAGATG 58.170 47.619 30.54 10.79 0.00 2.90
2130 5117 1.334869 GCTGGCTAATTTCATCCACGG 59.665 52.381 0.00 0.00 0.00 4.94
2180 5167 0.873743 GAGGCGAAGAGAGGCAATCG 60.874 60.000 0.00 0.00 38.28 3.34
2203 5190 5.122239 CGCCAAGATTAATGTTGAGTCTTCA 59.878 40.000 23.11 0.00 33.31 3.02
2204 5191 6.549952 GCCAAGATTAATGTTGAGTCTTCAG 58.450 40.000 23.11 7.89 33.31 3.02
2205 5192 6.549952 CCAAGATTAATGTTGAGTCTTCAGC 58.450 40.000 23.11 0.00 33.31 4.26
2206 5193 6.149973 CCAAGATTAATGTTGAGTCTTCAGCA 59.850 38.462 23.11 0.00 46.49 4.41
2304 5425 7.186021 ACTTTTCTACCTTGTGATTTGTACG 57.814 36.000 0.00 0.00 0.00 3.67
2306 5427 4.196626 TCTACCTTGTGATTTGTACGGG 57.803 45.455 0.00 0.00 0.00 5.28
2459 6352 2.445845 CCGGGGATCAGGTAGCCA 60.446 66.667 0.00 0.00 34.26 4.75
2676 6790 6.017357 GGTTCTCTGAAAAATTGTACTCCGTT 60.017 38.462 0.00 0.00 0.00 4.44
2691 6805 1.979308 TCCGTTCAGTTGGGTAATCCA 59.021 47.619 0.00 0.00 45.43 3.41
2700 6814 1.453197 GGGTAATCCAAGGTGGGCG 60.453 63.158 0.00 0.00 38.32 6.13
2701 6815 1.605453 GGTAATCCAAGGTGGGCGA 59.395 57.895 0.00 0.00 38.32 5.54
2712 6826 0.240145 GGTGGGCGAAAACTAGCAAC 59.760 55.000 0.00 0.00 34.54 4.17
2713 6827 0.948678 GTGGGCGAAAACTAGCAACA 59.051 50.000 0.00 0.00 34.54 3.33
2714 6828 1.539827 GTGGGCGAAAACTAGCAACAT 59.460 47.619 0.00 0.00 34.54 2.71
2715 6829 1.810151 TGGGCGAAAACTAGCAACATC 59.190 47.619 0.00 0.00 34.54 3.06
2716 6830 1.810151 GGGCGAAAACTAGCAACATCA 59.190 47.619 0.00 0.00 34.54 3.07
2717 6831 2.227865 GGGCGAAAACTAGCAACATCAA 59.772 45.455 0.00 0.00 34.54 2.57
2718 6832 3.305064 GGGCGAAAACTAGCAACATCAAA 60.305 43.478 0.00 0.00 34.54 2.69
2719 6833 4.295051 GGCGAAAACTAGCAACATCAAAA 58.705 39.130 0.00 0.00 34.54 2.44
2720 6834 4.382754 GGCGAAAACTAGCAACATCAAAAG 59.617 41.667 0.00 0.00 34.54 2.27
2721 6835 4.382754 GCGAAAACTAGCAACATCAAAAGG 59.617 41.667 0.00 0.00 0.00 3.11
2722 6836 4.917415 CGAAAACTAGCAACATCAAAAGGG 59.083 41.667 0.00 0.00 0.00 3.95
2723 6837 5.278266 CGAAAACTAGCAACATCAAAAGGGA 60.278 40.000 0.00 0.00 0.00 4.20
2724 6838 5.712152 AAACTAGCAACATCAAAAGGGAG 57.288 39.130 0.00 0.00 0.00 4.30
2725 6839 3.690460 ACTAGCAACATCAAAAGGGAGG 58.310 45.455 0.00 0.00 0.00 4.30
2726 6840 1.260544 AGCAACATCAAAAGGGAGGC 58.739 50.000 0.00 0.00 0.00 4.70
2727 6841 0.968405 GCAACATCAAAAGGGAGGCA 59.032 50.000 0.00 0.00 0.00 4.75
2728 6842 1.551883 GCAACATCAAAAGGGAGGCAT 59.448 47.619 0.00 0.00 0.00 4.40
2729 6843 2.417787 GCAACATCAAAAGGGAGGCATC 60.418 50.000 0.00 0.00 0.00 3.91
2730 6844 2.827322 CAACATCAAAAGGGAGGCATCA 59.173 45.455 0.00 0.00 0.00 3.07
2731 6845 3.393426 ACATCAAAAGGGAGGCATCAT 57.607 42.857 0.00 0.00 0.00 2.45
2732 6846 3.716431 ACATCAAAAGGGAGGCATCATT 58.284 40.909 0.00 0.00 0.00 2.57
2733 6847 4.098894 ACATCAAAAGGGAGGCATCATTT 58.901 39.130 0.00 0.00 0.00 2.32
2734 6848 4.533311 ACATCAAAAGGGAGGCATCATTTT 59.467 37.500 0.00 4.25 0.00 1.82
2735 6849 4.540359 TCAAAAGGGAGGCATCATTTTG 57.460 40.909 23.88 23.88 40.96 2.44
2736 6850 3.261390 TCAAAAGGGAGGCATCATTTTGG 59.739 43.478 26.70 14.37 40.51 3.28
2737 6851 1.870064 AAGGGAGGCATCATTTTGGG 58.130 50.000 0.00 0.00 0.00 4.12
2738 6852 0.712380 AGGGAGGCATCATTTTGGGT 59.288 50.000 0.00 0.00 0.00 4.51
2739 6853 1.114627 GGGAGGCATCATTTTGGGTC 58.885 55.000 0.00 0.00 0.00 4.46
2740 6854 0.740737 GGAGGCATCATTTTGGGTCG 59.259 55.000 0.00 0.00 0.00 4.79
2741 6855 0.101219 GAGGCATCATTTTGGGTCGC 59.899 55.000 0.00 0.00 0.00 5.19
2742 6856 1.141665 GGCATCATTTTGGGTCGCC 59.858 57.895 0.00 0.00 0.00 5.54
2743 6857 1.226660 GCATCATTTTGGGTCGCCG 60.227 57.895 0.00 0.00 0.00 6.46
2744 6858 1.226660 CATCATTTTGGGTCGCCGC 60.227 57.895 0.00 0.00 0.00 6.53
2745 6859 2.414785 ATCATTTTGGGTCGCCGCC 61.415 57.895 0.00 0.00 0.00 6.13
2746 6860 4.474846 CATTTTGGGTCGCCGCCG 62.475 66.667 0.00 0.00 0.00 6.46
2756 6870 4.508128 CGCCGCCGGAGCTAAGAA 62.508 66.667 7.68 0.00 36.60 2.52
2757 6871 2.125269 GCCGCCGGAGCTAAGAAA 60.125 61.111 7.68 0.00 36.60 2.52
2758 6872 2.461945 GCCGCCGGAGCTAAGAAAC 61.462 63.158 7.68 0.00 36.60 2.78
2759 6873 1.218316 CCGCCGGAGCTAAGAAACT 59.782 57.895 5.05 0.00 36.60 2.66
2760 6874 0.458669 CCGCCGGAGCTAAGAAACTA 59.541 55.000 5.05 0.00 36.60 2.24
2761 6875 1.536284 CCGCCGGAGCTAAGAAACTAG 60.536 57.143 5.05 0.00 36.60 2.57
2762 6876 1.536284 CGCCGGAGCTAAGAAACTAGG 60.536 57.143 5.05 0.00 36.60 3.02
2763 6877 1.202545 GCCGGAGCTAAGAAACTAGGG 60.203 57.143 5.05 0.00 35.50 3.53
2764 6878 2.108970 CCGGAGCTAAGAAACTAGGGT 58.891 52.381 0.00 0.00 0.00 4.34
2765 6879 2.101082 CCGGAGCTAAGAAACTAGGGTC 59.899 54.545 0.00 0.00 0.00 4.46
2766 6880 2.101082 CGGAGCTAAGAAACTAGGGTCC 59.899 54.545 0.00 0.00 40.06 4.46
2767 6881 3.105283 GGAGCTAAGAAACTAGGGTCCA 58.895 50.000 0.00 0.00 42.15 4.02
2768 6882 3.712218 GGAGCTAAGAAACTAGGGTCCAT 59.288 47.826 0.00 0.00 42.15 3.41
2769 6883 4.202274 GGAGCTAAGAAACTAGGGTCCATC 60.202 50.000 0.00 0.00 42.15 3.51
2770 6884 4.362677 AGCTAAGAAACTAGGGTCCATCA 58.637 43.478 0.00 0.00 0.00 3.07
2771 6885 4.971924 AGCTAAGAAACTAGGGTCCATCAT 59.028 41.667 0.00 0.00 0.00 2.45
2772 6886 5.059833 GCTAAGAAACTAGGGTCCATCATG 58.940 45.833 0.00 0.00 0.00 3.07
2773 6887 3.567478 AGAAACTAGGGTCCATCATGC 57.433 47.619 0.00 0.00 0.00 4.06
2774 6888 2.173569 AGAAACTAGGGTCCATCATGCC 59.826 50.000 0.00 0.00 0.00 4.40
2775 6889 0.469917 AACTAGGGTCCATCATGCCG 59.530 55.000 0.00 0.00 0.00 5.69
2776 6890 1.372683 CTAGGGTCCATCATGCCGG 59.627 63.158 0.00 0.00 0.00 6.13
2777 6891 2.116983 CTAGGGTCCATCATGCCGGG 62.117 65.000 2.18 0.00 0.00 5.73
2778 6892 2.613576 TAGGGTCCATCATGCCGGGA 62.614 60.000 2.18 0.00 0.00 5.14
2779 6893 2.111878 GGTCCATCATGCCGGGAG 59.888 66.667 2.18 0.00 0.00 4.30
2780 6894 2.746375 GGTCCATCATGCCGGGAGT 61.746 63.158 2.18 0.00 0.00 3.85
2781 6895 1.524621 GTCCATCATGCCGGGAGTG 60.525 63.158 2.18 0.65 0.00 3.51
2782 6896 1.688884 TCCATCATGCCGGGAGTGA 60.689 57.895 2.18 7.08 0.00 3.41
2783 6897 1.056125 TCCATCATGCCGGGAGTGAT 61.056 55.000 2.18 9.24 33.08 3.06
2784 6898 0.179009 CCATCATGCCGGGAGTGATT 60.179 55.000 14.92 0.00 30.57 2.57
2785 6899 1.233019 CATCATGCCGGGAGTGATTC 58.767 55.000 14.92 0.00 30.57 2.52
2786 6900 1.135094 ATCATGCCGGGAGTGATTCT 58.865 50.000 2.18 0.00 28.62 2.40
2787 6901 0.911769 TCATGCCGGGAGTGATTCTT 59.088 50.000 2.18 0.00 0.00 2.52
2788 6902 1.134401 TCATGCCGGGAGTGATTCTTC 60.134 52.381 2.18 0.00 0.00 2.87
2789 6903 0.181350 ATGCCGGGAGTGATTCTTCC 59.819 55.000 2.18 0.68 38.46 3.46
2795 6909 3.604875 GGGAGTGATTCTTCCGTGTAA 57.395 47.619 2.92 0.00 31.29 2.41
2796 6910 4.138487 GGGAGTGATTCTTCCGTGTAAT 57.862 45.455 2.92 0.00 31.29 1.89
2797 6911 3.871594 GGGAGTGATTCTTCCGTGTAATG 59.128 47.826 2.92 0.00 31.29 1.90
2798 6912 4.504858 GGAGTGATTCTTCCGTGTAATGT 58.495 43.478 0.00 0.00 0.00 2.71
2799 6913 4.935808 GGAGTGATTCTTCCGTGTAATGTT 59.064 41.667 0.00 0.00 0.00 2.71
2800 6914 6.103997 GGAGTGATTCTTCCGTGTAATGTTA 58.896 40.000 0.00 0.00 0.00 2.41
2801 6915 6.592607 GGAGTGATTCTTCCGTGTAATGTTAA 59.407 38.462 0.00 0.00 0.00 2.01
2802 6916 7.201530 GGAGTGATTCTTCCGTGTAATGTTAAG 60.202 40.741 0.00 0.00 0.00 1.85
2803 6917 6.594159 AGTGATTCTTCCGTGTAATGTTAAGG 59.406 38.462 0.00 0.00 0.00 2.69
2804 6918 5.878116 TGATTCTTCCGTGTAATGTTAAGGG 59.122 40.000 0.00 0.00 0.00 3.95
2805 6919 4.210724 TCTTCCGTGTAATGTTAAGGGG 57.789 45.455 0.00 0.00 0.00 4.79
2806 6920 3.583966 TCTTCCGTGTAATGTTAAGGGGT 59.416 43.478 0.00 0.00 0.00 4.95
2807 6921 3.337694 TCCGTGTAATGTTAAGGGGTG 57.662 47.619 0.00 0.00 0.00 4.61
2808 6922 2.638855 TCCGTGTAATGTTAAGGGGTGT 59.361 45.455 0.00 0.00 0.00 4.16
2809 6923 3.072768 TCCGTGTAATGTTAAGGGGTGTT 59.927 43.478 0.00 0.00 0.00 3.32
2810 6924 3.822167 CCGTGTAATGTTAAGGGGTGTTT 59.178 43.478 0.00 0.00 0.00 2.83
2811 6925 4.320641 CCGTGTAATGTTAAGGGGTGTTTG 60.321 45.833 0.00 0.00 0.00 2.93
2812 6926 4.276431 CGTGTAATGTTAAGGGGTGTTTGT 59.724 41.667 0.00 0.00 0.00 2.83
2813 6927 5.469421 CGTGTAATGTTAAGGGGTGTTTGTA 59.531 40.000 0.00 0.00 0.00 2.41
2814 6928 6.017275 CGTGTAATGTTAAGGGGTGTTTGTAA 60.017 38.462 0.00 0.00 0.00 2.41
2815 6929 7.140705 GTGTAATGTTAAGGGGTGTTTGTAAC 58.859 38.462 0.00 0.00 0.00 2.50
2816 6930 6.832384 TGTAATGTTAAGGGGTGTTTGTAACA 59.168 34.615 0.00 0.00 38.60 2.41
2834 6948 9.832445 TTTGTAACACAAACTCTATTCTCTCTT 57.168 29.630 0.45 0.00 42.55 2.85
2861 6975 7.979115 TTAATATACGTGGCAAATCTTTTGC 57.021 32.000 14.88 14.88 44.22 3.68
2871 6985 5.411083 GCAAATCTTTTGCCCGTTAAAAA 57.589 34.783 12.74 0.00 39.38 1.94
2893 7007 5.405935 AAAATTTATTGACCCACCTCAGC 57.594 39.130 0.00 0.00 0.00 4.26
2894 7008 3.737559 ATTTATTGACCCACCTCAGCA 57.262 42.857 0.00 0.00 0.00 4.41
2895 7009 2.787473 TTATTGACCCACCTCAGCAG 57.213 50.000 0.00 0.00 0.00 4.24
2896 7010 0.253044 TATTGACCCACCTCAGCAGC 59.747 55.000 0.00 0.00 0.00 5.25
2897 7011 2.490270 ATTGACCCACCTCAGCAGCC 62.490 60.000 0.00 0.00 0.00 4.85
2898 7012 3.640407 GACCCACCTCAGCAGCCA 61.640 66.667 0.00 0.00 0.00 4.75
2899 7013 3.618780 GACCCACCTCAGCAGCCAG 62.619 68.421 0.00 0.00 0.00 4.85
2900 7014 4.421515 CCCACCTCAGCAGCCAGG 62.422 72.222 6.47 6.47 35.69 4.45
2901 7015 4.421515 CCACCTCAGCAGCCAGGG 62.422 72.222 11.95 3.67 33.57 4.45
2902 7016 3.644606 CACCTCAGCAGCCAGGGT 61.645 66.667 11.95 4.26 33.57 4.34
2903 7017 3.325753 ACCTCAGCAGCCAGGGTC 61.326 66.667 11.95 0.00 33.57 4.46
2904 7018 4.463879 CCTCAGCAGCCAGGGTCG 62.464 72.222 0.38 0.00 0.00 4.79
2905 7019 3.699894 CTCAGCAGCCAGGGTCGT 61.700 66.667 0.00 0.00 0.00 4.34
2906 7020 2.283604 TCAGCAGCCAGGGTCGTA 60.284 61.111 0.00 0.00 0.00 3.43
2907 7021 2.125512 CAGCAGCCAGGGTCGTAC 60.126 66.667 0.00 0.00 0.00 3.67
2908 7022 3.391382 AGCAGCCAGGGTCGTACC 61.391 66.667 0.00 0.00 37.60 3.34
2909 7023 3.391382 GCAGCCAGGGTCGTACCT 61.391 66.667 0.00 0.00 43.08 3.08
2910 7024 2.056223 GCAGCCAGGGTCGTACCTA 61.056 63.158 0.00 0.00 39.34 3.08
2911 7025 1.610554 GCAGCCAGGGTCGTACCTAA 61.611 60.000 0.00 0.00 39.34 2.69
2912 7026 1.120530 CAGCCAGGGTCGTACCTAAT 58.879 55.000 0.00 0.00 39.34 1.73
2913 7027 1.485066 CAGCCAGGGTCGTACCTAATT 59.515 52.381 0.00 0.00 39.34 1.40
2914 7028 2.093128 CAGCCAGGGTCGTACCTAATTT 60.093 50.000 0.00 0.00 39.34 1.82
2915 7029 2.574824 AGCCAGGGTCGTACCTAATTTT 59.425 45.455 0.49 0.00 39.34 1.82
2916 7030 3.776417 AGCCAGGGTCGTACCTAATTTTA 59.224 43.478 0.49 0.00 39.34 1.52
2917 7031 4.411212 AGCCAGGGTCGTACCTAATTTTAT 59.589 41.667 0.49 0.00 39.34 1.40
2918 7032 4.514066 GCCAGGGTCGTACCTAATTTTATG 59.486 45.833 0.49 0.00 39.34 1.90
2919 7033 5.061179 CCAGGGTCGTACCTAATTTTATGG 58.939 45.833 0.49 0.00 39.34 2.74
2920 7034 5.397109 CCAGGGTCGTACCTAATTTTATGGT 60.397 44.000 0.49 0.00 39.34 3.55
2921 7035 5.526111 CAGGGTCGTACCTAATTTTATGGTG 59.474 44.000 0.49 0.00 39.34 4.17
2922 7036 5.190330 AGGGTCGTACCTAATTTTATGGTGT 59.810 40.000 0.00 0.00 39.65 4.16
2923 7037 5.882000 GGGTCGTACCTAATTTTATGGTGTT 59.118 40.000 0.00 0.00 38.64 3.32
2924 7038 6.375174 GGGTCGTACCTAATTTTATGGTGTTT 59.625 38.462 0.00 0.00 38.64 2.83
2925 7039 7.094248 GGGTCGTACCTAATTTTATGGTGTTTT 60.094 37.037 0.00 0.00 38.64 2.43
2926 7040 7.751793 GGTCGTACCTAATTTTATGGTGTTTTG 59.248 37.037 0.00 0.00 34.73 2.44
2927 7041 8.291740 GTCGTACCTAATTTTATGGTGTTTTGT 58.708 33.333 0.00 0.00 35.48 2.83
2928 7042 9.499479 TCGTACCTAATTTTATGGTGTTTTGTA 57.501 29.630 0.00 0.00 35.48 2.41
2941 7055 8.761575 ATGGTGTTTTGTATTATGCAAAAGAG 57.238 30.769 18.63 0.00 43.62 2.85
2942 7056 7.049140 GGTGTTTTGTATTATGCAAAAGAGC 57.951 36.000 23.04 23.04 44.18 4.09
2943 7057 6.868339 GGTGTTTTGTATTATGCAAAAGAGCT 59.132 34.615 26.87 0.00 45.53 4.09
2944 7058 7.062255 GGTGTTTTGTATTATGCAAAAGAGCTC 59.938 37.037 26.87 5.27 45.53 4.09
2945 7059 6.801377 TGTTTTGTATTATGCAAAAGAGCTCG 59.199 34.615 18.63 0.00 43.62 5.03
2946 7060 6.494893 TTTGTATTATGCAAAAGAGCTCGT 57.505 33.333 8.37 1.01 33.51 4.18
2947 7061 7.603963 TTTGTATTATGCAAAAGAGCTCGTA 57.396 32.000 8.37 0.00 33.51 3.43
2948 7062 6.583912 TGTATTATGCAAAAGAGCTCGTAC 57.416 37.500 8.37 0.00 34.99 3.67
2949 7063 6.103330 TGTATTATGCAAAAGAGCTCGTACA 58.897 36.000 8.37 5.29 34.99 2.90
2950 7064 6.761242 TGTATTATGCAAAAGAGCTCGTACAT 59.239 34.615 8.37 12.06 34.99 2.29
2951 7065 6.683974 ATTATGCAAAAGAGCTCGTACATT 57.316 33.333 8.37 0.00 34.99 2.71
2952 7066 3.811722 TGCAAAAGAGCTCGTACATTG 57.188 42.857 8.37 8.05 34.99 2.82
2953 7067 3.138304 TGCAAAAGAGCTCGTACATTGT 58.862 40.909 8.37 0.00 34.99 2.71
2954 7068 4.311606 TGCAAAAGAGCTCGTACATTGTA 58.688 39.130 8.37 3.75 34.99 2.41
2955 7069 4.752604 TGCAAAAGAGCTCGTACATTGTAA 59.247 37.500 8.37 0.00 34.99 2.41
2956 7070 5.080068 GCAAAAGAGCTCGTACATTGTAAC 58.920 41.667 8.37 0.00 0.00 2.50
2957 7071 5.107065 GCAAAAGAGCTCGTACATTGTAACT 60.107 40.000 8.37 0.00 0.00 2.24
2958 7072 6.299604 CAAAAGAGCTCGTACATTGTAACTG 58.700 40.000 8.37 0.00 0.00 3.16
2959 7073 5.386958 AAGAGCTCGTACATTGTAACTGA 57.613 39.130 8.37 0.00 0.00 3.41
2960 7074 5.386958 AGAGCTCGTACATTGTAACTGAA 57.613 39.130 8.37 0.00 0.00 3.02
2961 7075 5.403246 AGAGCTCGTACATTGTAACTGAAG 58.597 41.667 8.37 0.00 0.00 3.02
2962 7076 5.183331 AGAGCTCGTACATTGTAACTGAAGA 59.817 40.000 8.37 0.00 0.00 2.87
2963 7077 5.779922 AGCTCGTACATTGTAACTGAAGAA 58.220 37.500 0.00 0.00 0.00 2.52
2964 7078 6.220930 AGCTCGTACATTGTAACTGAAGAAA 58.779 36.000 0.00 0.00 0.00 2.52
2965 7079 6.704493 AGCTCGTACATTGTAACTGAAGAAAA 59.296 34.615 0.00 0.00 0.00 2.29
2966 7080 7.225931 AGCTCGTACATTGTAACTGAAGAAAAA 59.774 33.333 0.00 0.00 0.00 1.94
2995 7109 7.964604 AACACACTCTCTTAACTCAATAACC 57.035 36.000 0.00 0.00 0.00 2.85
2996 7110 7.062749 ACACACTCTCTTAACTCAATAACCA 57.937 36.000 0.00 0.00 0.00 3.67
2997 7111 7.680730 ACACACTCTCTTAACTCAATAACCAT 58.319 34.615 0.00 0.00 0.00 3.55
2998 7112 7.604164 ACACACTCTCTTAACTCAATAACCATG 59.396 37.037 0.00 0.00 0.00 3.66
2999 7113 7.819415 CACACTCTCTTAACTCAATAACCATGA 59.181 37.037 0.00 0.00 0.00 3.07
3000 7114 7.819900 ACACTCTCTTAACTCAATAACCATGAC 59.180 37.037 0.00 0.00 0.00 3.06
3001 7115 8.037758 CACTCTCTTAACTCAATAACCATGACT 58.962 37.037 0.00 0.00 0.00 3.41
3002 7116 8.254508 ACTCTCTTAACTCAATAACCATGACTC 58.745 37.037 0.00 0.00 0.00 3.36
3003 7117 8.134202 TCTCTTAACTCAATAACCATGACTCA 57.866 34.615 0.00 0.00 0.00 3.41
3004 7118 8.593679 TCTCTTAACTCAATAACCATGACTCAA 58.406 33.333 0.00 0.00 0.00 3.02
3005 7119 9.219603 CTCTTAACTCAATAACCATGACTCAAA 57.780 33.333 0.00 0.00 0.00 2.69
3006 7120 9.567776 TCTTAACTCAATAACCATGACTCAAAA 57.432 29.630 0.00 0.00 0.00 2.44
3008 7122 9.959749 TTAACTCAATAACCATGACTCAAAAAC 57.040 29.630 0.00 0.00 0.00 2.43
3009 7123 6.981722 ACTCAATAACCATGACTCAAAAACC 58.018 36.000 0.00 0.00 0.00 3.27
3010 7124 6.777580 ACTCAATAACCATGACTCAAAAACCT 59.222 34.615 0.00 0.00 0.00 3.50
3011 7125 7.040409 ACTCAATAACCATGACTCAAAAACCTC 60.040 37.037 0.00 0.00 0.00 3.85
3012 7126 6.775142 TCAATAACCATGACTCAAAAACCTCA 59.225 34.615 0.00 0.00 0.00 3.86
3013 7127 7.286546 TCAATAACCATGACTCAAAAACCTCAA 59.713 33.333 0.00 0.00 0.00 3.02
3014 7128 7.781324 ATAACCATGACTCAAAAACCTCAAT 57.219 32.000 0.00 0.00 0.00 2.57
3015 7129 8.877864 ATAACCATGACTCAAAAACCTCAATA 57.122 30.769 0.00 0.00 0.00 1.90
3016 7130 6.824305 ACCATGACTCAAAAACCTCAATAG 57.176 37.500 0.00 0.00 0.00 1.73
3028 7142 3.543680 CCTCAATAGGTCCACGTCATT 57.456 47.619 0.00 0.00 38.19 2.57
3029 7143 3.873910 CCTCAATAGGTCCACGTCATTT 58.126 45.455 0.00 0.00 38.19 2.32
3030 7144 5.018539 CCTCAATAGGTCCACGTCATTTA 57.981 43.478 0.00 0.00 38.19 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
225 288 1.449423 CAACGATGTCGGCATGGGA 60.449 57.895 16.58 0.00 44.95 4.37
262 326 7.509659 AGAAAAAGTCCTAGAACTAGAGAACCA 59.490 37.037 10.04 0.00 35.21 3.67
263 327 7.898918 AGAAAAAGTCCTAGAACTAGAGAACC 58.101 38.462 10.04 0.00 35.21 3.62
265 329 9.810870 ACTAGAAAAAGTCCTAGAACTAGAGAA 57.189 33.333 10.04 0.00 36.69 2.87
307 371 4.723309 AGCATCACCTTGAGAGTCTTTTT 58.277 39.130 0.00 0.00 0.00 1.94
308 372 4.363991 AGCATCACCTTGAGAGTCTTTT 57.636 40.909 0.00 0.00 0.00 2.27
309 373 4.041444 AGAAGCATCACCTTGAGAGTCTTT 59.959 41.667 0.00 0.00 0.00 2.52
310 374 3.582208 AGAAGCATCACCTTGAGAGTCTT 59.418 43.478 0.00 0.00 0.00 3.01
311 375 3.172339 AGAAGCATCACCTTGAGAGTCT 58.828 45.455 0.00 0.00 0.00 3.24
312 376 3.608316 AGAAGCATCACCTTGAGAGTC 57.392 47.619 0.00 0.00 0.00 3.36
313 377 4.081198 CCTTAGAAGCATCACCTTGAGAGT 60.081 45.833 0.00 0.00 0.00 3.24
314 378 4.161189 TCCTTAGAAGCATCACCTTGAGAG 59.839 45.833 0.00 0.00 0.00 3.20
315 379 4.096681 TCCTTAGAAGCATCACCTTGAGA 58.903 43.478 0.00 0.00 0.00 3.27
316 380 4.478206 TCCTTAGAAGCATCACCTTGAG 57.522 45.455 0.00 0.00 0.00 3.02
317 381 5.441718 AATCCTTAGAAGCATCACCTTGA 57.558 39.130 0.00 0.00 0.00 3.02
318 382 6.521151 AAAATCCTTAGAAGCATCACCTTG 57.479 37.500 0.00 0.00 0.00 3.61
319 383 7.148000 GCTAAAAATCCTTAGAAGCATCACCTT 60.148 37.037 0.00 0.00 31.59 3.50
320 384 6.319911 GCTAAAAATCCTTAGAAGCATCACCT 59.680 38.462 0.00 0.00 31.59 4.00
321 385 6.095440 TGCTAAAAATCCTTAGAAGCATCACC 59.905 38.462 0.00 0.00 33.84 4.02
322 386 7.088589 TGCTAAAAATCCTTAGAAGCATCAC 57.911 36.000 0.00 0.00 33.84 3.06
323 387 7.701539 TTGCTAAAAATCCTTAGAAGCATCA 57.298 32.000 0.00 0.00 38.21 3.07
324 388 8.986477 TTTTGCTAAAAATCCTTAGAAGCATC 57.014 30.769 0.00 0.00 38.21 3.91
325 389 9.428097 CTTTTTGCTAAAAATCCTTAGAAGCAT 57.572 29.630 7.45 0.00 39.43 3.79
326 390 8.421002 ACTTTTTGCTAAAAATCCTTAGAAGCA 58.579 29.630 7.45 0.00 39.43 3.91
327 391 8.818141 ACTTTTTGCTAAAAATCCTTAGAAGC 57.182 30.769 7.45 0.00 39.43 3.86
330 394 9.349713 TGAGACTTTTTGCTAAAAATCCTTAGA 57.650 29.630 10.43 0.00 39.43 2.10
331 395 9.965824 TTGAGACTTTTTGCTAAAAATCCTTAG 57.034 29.630 10.43 0.00 39.43 2.18
333 397 9.665719 TTTTGAGACTTTTTGCTAAAAATCCTT 57.334 25.926 10.43 0.00 39.43 3.36
334 398 9.665719 TTTTTGAGACTTTTTGCTAAAAATCCT 57.334 25.926 10.43 6.42 39.43 3.24
357 421 5.689031 GCAAACCAAATAAGGGGGACTTTTT 60.689 40.000 0.00 0.00 40.64 1.94
358 422 4.202419 GCAAACCAAATAAGGGGGACTTTT 60.202 41.667 0.00 0.00 40.64 2.27
359 423 3.326588 GCAAACCAAATAAGGGGGACTTT 59.673 43.478 0.00 0.00 40.64 2.66
360 424 2.903784 GCAAACCAAATAAGGGGGACTT 59.096 45.455 0.00 0.00 43.28 3.01
361 425 2.111792 AGCAAACCAAATAAGGGGGACT 59.888 45.455 0.00 0.00 0.00 3.85
362 426 2.536066 AGCAAACCAAATAAGGGGGAC 58.464 47.619 0.00 0.00 0.00 4.46
363 427 3.309556 CCTAGCAAACCAAATAAGGGGGA 60.310 47.826 0.00 0.00 0.00 4.81
364 428 3.031013 CCTAGCAAACCAAATAAGGGGG 58.969 50.000 0.00 0.00 0.00 5.40
365 429 3.031013 CCCTAGCAAACCAAATAAGGGG 58.969 50.000 0.00 0.00 38.84 4.79
366 430 3.699538 GTCCCTAGCAAACCAAATAAGGG 59.300 47.826 0.00 0.00 43.03 3.95
367 431 4.600062 AGTCCCTAGCAAACCAAATAAGG 58.400 43.478 0.00 0.00 0.00 2.69
368 432 6.590234 AAAGTCCCTAGCAAACCAAATAAG 57.410 37.500 0.00 0.00 0.00 1.73
369 433 6.987403 AAAAGTCCCTAGCAAACCAAATAA 57.013 33.333 0.00 0.00 0.00 1.40
370 434 6.661805 CCTAAAAGTCCCTAGCAAACCAAATA 59.338 38.462 0.00 0.00 0.00 1.40
371 435 5.480422 CCTAAAAGTCCCTAGCAAACCAAAT 59.520 40.000 0.00 0.00 0.00 2.32
372 436 4.830600 CCTAAAAGTCCCTAGCAAACCAAA 59.169 41.667 0.00 0.00 0.00 3.28
373 437 4.403734 CCTAAAAGTCCCTAGCAAACCAA 58.596 43.478 0.00 0.00 0.00 3.67
374 438 3.245122 CCCTAAAAGTCCCTAGCAAACCA 60.245 47.826 0.00 0.00 0.00 3.67
375 439 3.009805 TCCCTAAAAGTCCCTAGCAAACC 59.990 47.826 0.00 0.00 0.00 3.27
376 440 4.008330 GTCCCTAAAAGTCCCTAGCAAAC 58.992 47.826 0.00 0.00 0.00 2.93
377 441 3.914435 AGTCCCTAAAAGTCCCTAGCAAA 59.086 43.478 0.00 0.00 0.00 3.68
378 442 3.527937 AGTCCCTAAAAGTCCCTAGCAA 58.472 45.455 0.00 0.00 0.00 3.91
379 443 3.200958 AGTCCCTAAAAGTCCCTAGCA 57.799 47.619 0.00 0.00 0.00 3.49
380 444 4.571369 AAAGTCCCTAAAAGTCCCTAGC 57.429 45.455 0.00 0.00 0.00 3.42
401 465 6.844097 ACTTTTCTGTGTTGGGACTAAAAA 57.156 33.333 0.00 0.00 0.00 1.94
402 466 6.127563 GGAACTTTTCTGTGTTGGGACTAAAA 60.128 38.462 0.00 0.00 0.00 1.52
403 467 5.358725 GGAACTTTTCTGTGTTGGGACTAAA 59.641 40.000 0.00 0.00 0.00 1.85
404 468 4.885325 GGAACTTTTCTGTGTTGGGACTAA 59.115 41.667 0.00 0.00 0.00 2.24
405 469 4.165372 AGGAACTTTTCTGTGTTGGGACTA 59.835 41.667 0.00 0.00 27.25 2.59
406 470 3.053619 AGGAACTTTTCTGTGTTGGGACT 60.054 43.478 0.00 0.00 27.25 3.85
407 471 3.066760 CAGGAACTTTTCTGTGTTGGGAC 59.933 47.826 0.00 0.00 34.60 4.46
408 472 3.287222 CAGGAACTTTTCTGTGTTGGGA 58.713 45.455 0.00 0.00 34.60 4.37
409 473 2.362077 CCAGGAACTTTTCTGTGTTGGG 59.638 50.000 0.00 0.00 34.60 4.12
410 474 3.287222 TCCAGGAACTTTTCTGTGTTGG 58.713 45.455 0.00 0.00 34.60 3.77
411 475 4.440112 GGTTCCAGGAACTTTTCTGTGTTG 60.440 45.833 28.14 0.00 41.70 3.33
412 476 3.699538 GGTTCCAGGAACTTTTCTGTGTT 59.300 43.478 28.14 0.00 41.70 3.32
413 477 3.288092 GGTTCCAGGAACTTTTCTGTGT 58.712 45.455 28.14 0.00 41.70 3.72
414 478 3.287222 TGGTTCCAGGAACTTTTCTGTG 58.713 45.455 28.14 0.00 41.70 3.66
415 479 3.662759 TGGTTCCAGGAACTTTTCTGT 57.337 42.857 28.14 0.00 41.70 3.41
416 480 4.159506 TGTTTGGTTCCAGGAACTTTTCTG 59.840 41.667 28.14 0.00 41.70 3.02
417 481 4.159693 GTGTTTGGTTCCAGGAACTTTTCT 59.840 41.667 28.14 0.00 41.70 2.52
418 482 4.430007 GTGTTTGGTTCCAGGAACTTTTC 58.570 43.478 28.14 17.58 41.70 2.29
419 483 3.196901 GGTGTTTGGTTCCAGGAACTTTT 59.803 43.478 28.14 0.00 41.70 2.27
420 484 2.764010 GGTGTTTGGTTCCAGGAACTTT 59.236 45.455 28.14 0.00 41.70 2.66
421 485 2.384828 GGTGTTTGGTTCCAGGAACTT 58.615 47.619 28.14 0.00 41.70 2.66
422 486 1.411074 GGGTGTTTGGTTCCAGGAACT 60.411 52.381 28.14 0.00 41.70 3.01
423 487 1.037493 GGGTGTTTGGTTCCAGGAAC 58.963 55.000 22.73 22.73 41.32 3.62
424 488 0.105913 GGGGTGTTTGGTTCCAGGAA 60.106 55.000 0.00 0.00 0.00 3.36
425 489 1.539665 GGGGTGTTTGGTTCCAGGA 59.460 57.895 0.00 0.00 0.00 3.86
426 490 1.533033 GGGGGTGTTTGGTTCCAGG 60.533 63.158 0.00 0.00 0.00 4.45
427 491 0.774908 TAGGGGGTGTTTGGTTCCAG 59.225 55.000 0.00 0.00 0.00 3.86
428 492 1.232909 TTAGGGGGTGTTTGGTTCCA 58.767 50.000 0.00 0.00 0.00 3.53
429 493 2.385135 TTTAGGGGGTGTTTGGTTCC 57.615 50.000 0.00 0.00 0.00 3.62
430 494 4.669700 AGTATTTAGGGGGTGTTTGGTTC 58.330 43.478 0.00 0.00 0.00 3.62
431 495 4.752621 AGTATTTAGGGGGTGTTTGGTT 57.247 40.909 0.00 0.00 0.00 3.67
432 496 4.853856 AGTAGTATTTAGGGGGTGTTTGGT 59.146 41.667 0.00 0.00 0.00 3.67
433 497 5.434408 GAGTAGTATTTAGGGGGTGTTTGG 58.566 45.833 0.00 0.00 0.00 3.28
434 498 5.434408 GGAGTAGTATTTAGGGGGTGTTTG 58.566 45.833 0.00 0.00 0.00 2.93
435 499 4.476113 GGGAGTAGTATTTAGGGGGTGTTT 59.524 45.833 0.00 0.00 0.00 2.83
436 500 4.042884 GGGAGTAGTATTTAGGGGGTGTT 58.957 47.826 0.00 0.00 0.00 3.32
437 501 3.014342 TGGGAGTAGTATTTAGGGGGTGT 59.986 47.826 0.00 0.00 0.00 4.16
438 502 3.660959 TGGGAGTAGTATTTAGGGGGTG 58.339 50.000 0.00 0.00 0.00 4.61
439 503 4.174253 AGATGGGAGTAGTATTTAGGGGGT 59.826 45.833 0.00 0.00 0.00 4.95
440 504 4.764491 AGATGGGAGTAGTATTTAGGGGG 58.236 47.826 0.00 0.00 0.00 5.40
441 505 8.450780 AATAAGATGGGAGTAGTATTTAGGGG 57.549 38.462 0.00 0.00 0.00 4.79
442 506 9.327731 AGAATAAGATGGGAGTAGTATTTAGGG 57.672 37.037 0.00 0.00 0.00 3.53
474 538 1.225704 GCAGCTGGCCCTCTTATGT 59.774 57.895 17.12 0.00 36.11 2.29
511 575 1.040646 GTGAGTGAGTGAGTGACCCA 58.959 55.000 0.00 0.00 0.00 4.51
531 601 3.055530 AGCTCAGTGATTTACTCAGGTGG 60.056 47.826 0.00 0.00 36.84 4.61
578 648 1.610967 TATCTGGTGGCGGGACACA 60.611 57.895 7.02 0.00 43.08 3.72
708 778 4.892002 GGCCCCCGATATTTTCGT 57.108 55.556 0.00 0.00 46.65 3.85
872 1405 4.379243 CGACGAGGCCAGCAAGGT 62.379 66.667 5.01 0.00 40.61 3.50
1129 1687 1.078656 AGGAGAGCAGAGGAGGAAAGT 59.921 52.381 0.00 0.00 0.00 2.66
1159 1722 5.757320 CAGAAGAGAACAGAAAAGAGAGCAA 59.243 40.000 0.00 0.00 0.00 3.91
1388 2776 4.023193 AGCTCAACGTTGGAATTAAACAGG 60.023 41.667 27.02 0.00 0.00 4.00
1514 2925 1.285373 ACCACGTCACCCTCTCTCTAT 59.715 52.381 0.00 0.00 0.00 1.98
1603 3017 2.013483 CTCGTCATCGCCATCGCTC 61.013 63.158 0.00 0.00 36.96 5.03
1662 3110 7.174253 AGGGACGTACGTCGGTATATTATTTTA 59.826 37.037 34.69 0.00 45.41 1.52
1833 3397 1.746220 AGTAGTGCTCTGCTCGGTAAG 59.254 52.381 0.09 0.00 31.17 2.34
1850 3414 9.880157 GGTGGTGAACAATAAATAAGTAGAGTA 57.120 33.333 0.00 0.00 0.00 2.59
1851 3415 7.548075 CGGTGGTGAACAATAAATAAGTAGAGT 59.452 37.037 0.00 0.00 0.00 3.24
1853 3417 7.388437 ACGGTGGTGAACAATAAATAAGTAGA 58.612 34.615 0.00 0.00 0.00 2.59
1877 3446 2.292794 CTTCCTGCATGGCATGGCAC 62.293 60.000 25.84 13.55 38.13 5.01
1970 4942 4.789075 TTGGAGGAGCGCGCGTAC 62.789 66.667 32.35 23.69 0.00 3.67
1994 4972 2.095532 ACTTATCTTGGACGACGACGAG 59.904 50.000 15.32 3.52 42.66 4.18
2064 5051 7.190871 TCATTTCTTTTAGAAACAACACGACC 58.809 34.615 4.14 0.00 45.83 4.79
2180 5167 6.500684 TGAAGACTCAACATTAATCTTGGC 57.499 37.500 3.95 0.00 29.85 4.52
2183 5170 7.934855 ATGCTGAAGACTCAACATTAATCTT 57.065 32.000 0.00 0.00 35.30 2.40
2203 5190 3.509575 GTGACTAGGCTATGCTCTATGCT 59.490 47.826 0.00 0.00 43.37 3.79
2204 5191 3.509575 AGTGACTAGGCTATGCTCTATGC 59.490 47.826 0.00 0.00 43.25 3.14
2205 5192 6.657117 TCTTAGTGACTAGGCTATGCTCTATG 59.343 42.308 0.00 4.18 0.00 2.23
2206 5193 6.785076 TCTTAGTGACTAGGCTATGCTCTAT 58.215 40.000 0.00 0.00 0.00 1.98
2207 5194 6.189036 TCTTAGTGACTAGGCTATGCTCTA 57.811 41.667 0.00 0.00 0.00 2.43
2208 5195 5.055265 TCTTAGTGACTAGGCTATGCTCT 57.945 43.478 0.00 0.00 0.00 4.09
2209 5196 5.533154 TCTTCTTAGTGACTAGGCTATGCTC 59.467 44.000 0.00 0.00 0.00 4.26
2287 5408 3.579586 ACTCCCGTACAAATCACAAGGTA 59.420 43.478 0.00 0.00 0.00 3.08
2304 5425 3.308438 TTCACGCAAAGTAGTACTCCC 57.692 47.619 2.58 0.00 0.00 4.30
2306 5427 6.462073 TTCAATTCACGCAAAGTAGTACTC 57.538 37.500 2.58 0.00 0.00 2.59
2375 6268 0.986527 TCTGAGCAGAGGCCAATTGA 59.013 50.000 5.01 0.00 42.56 2.57
2448 6341 6.668645 TGGTAAACATAAATGGCTACCTGAT 58.331 36.000 17.06 0.00 38.70 2.90
2691 6805 0.109723 TGCTAGTTTTCGCCCACCTT 59.890 50.000 0.00 0.00 0.00 3.50
2700 6814 6.084326 TCCCTTTTGATGTTGCTAGTTTTC 57.916 37.500 0.00 0.00 0.00 2.29
2701 6815 5.011023 CCTCCCTTTTGATGTTGCTAGTTTT 59.989 40.000 0.00 0.00 0.00 2.43
2712 6826 4.748277 AAATGATGCCTCCCTTTTGATG 57.252 40.909 0.00 0.00 0.00 3.07
2713 6827 4.080751 CCAAAATGATGCCTCCCTTTTGAT 60.081 41.667 19.34 0.00 36.29 2.57
2714 6828 3.261390 CCAAAATGATGCCTCCCTTTTGA 59.739 43.478 19.34 0.00 36.29 2.69
2715 6829 3.602483 CCAAAATGATGCCTCCCTTTTG 58.398 45.455 14.51 14.51 35.20 2.44
2716 6830 2.573009 CCCAAAATGATGCCTCCCTTTT 59.427 45.455 0.00 0.00 0.00 2.27
2717 6831 2.190538 CCCAAAATGATGCCTCCCTTT 58.809 47.619 0.00 0.00 0.00 3.11
2718 6832 1.079323 ACCCAAAATGATGCCTCCCTT 59.921 47.619 0.00 0.00 0.00 3.95
2719 6833 0.712380 ACCCAAAATGATGCCTCCCT 59.288 50.000 0.00 0.00 0.00 4.20
2720 6834 1.114627 GACCCAAAATGATGCCTCCC 58.885 55.000 0.00 0.00 0.00 4.30
2721 6835 0.740737 CGACCCAAAATGATGCCTCC 59.259 55.000 0.00 0.00 0.00 4.30
2722 6836 0.101219 GCGACCCAAAATGATGCCTC 59.899 55.000 0.00 0.00 0.00 4.70
2723 6837 1.322538 GGCGACCCAAAATGATGCCT 61.323 55.000 0.00 0.00 38.00 4.75
2724 6838 1.141665 GGCGACCCAAAATGATGCC 59.858 57.895 0.00 0.00 0.00 4.40
2725 6839 1.226660 CGGCGACCCAAAATGATGC 60.227 57.895 0.00 0.00 0.00 3.91
2726 6840 1.226660 GCGGCGACCCAAAATGATG 60.227 57.895 12.98 0.00 0.00 3.07
2727 6841 2.414785 GGCGGCGACCCAAAATGAT 61.415 57.895 12.98 0.00 0.00 2.45
2728 6842 3.059386 GGCGGCGACCCAAAATGA 61.059 61.111 12.98 0.00 0.00 2.57
2729 6843 4.474846 CGGCGGCGACCCAAAATG 62.475 66.667 29.19 0.00 0.00 2.32
2739 6853 4.508128 TTCTTAGCTCCGGCGGCG 62.508 66.667 26.12 26.12 44.37 6.46
2740 6854 2.125269 TTTCTTAGCTCCGGCGGC 60.125 61.111 23.83 11.05 44.37 6.53
2741 6855 0.458669 TAGTTTCTTAGCTCCGGCGG 59.541 55.000 22.51 22.51 44.37 6.13
2742 6856 1.536284 CCTAGTTTCTTAGCTCCGGCG 60.536 57.143 0.00 0.00 44.37 6.46
2743 6857 1.202545 CCCTAGTTTCTTAGCTCCGGC 60.203 57.143 0.00 0.00 39.06 6.13
2744 6858 2.101082 GACCCTAGTTTCTTAGCTCCGG 59.899 54.545 0.00 0.00 0.00 5.14
2745 6859 2.101082 GGACCCTAGTTTCTTAGCTCCG 59.899 54.545 0.00 0.00 0.00 4.63
2746 6860 3.105283 TGGACCCTAGTTTCTTAGCTCC 58.895 50.000 0.00 0.00 0.00 4.70
2747 6861 4.406003 TGATGGACCCTAGTTTCTTAGCTC 59.594 45.833 0.00 0.00 0.00 4.09
2748 6862 4.362677 TGATGGACCCTAGTTTCTTAGCT 58.637 43.478 0.00 0.00 0.00 3.32
2749 6863 4.755266 TGATGGACCCTAGTTTCTTAGC 57.245 45.455 0.00 0.00 0.00 3.09
2750 6864 5.059833 GCATGATGGACCCTAGTTTCTTAG 58.940 45.833 0.00 0.00 0.00 2.18
2751 6865 4.141482 GGCATGATGGACCCTAGTTTCTTA 60.141 45.833 0.00 0.00 0.00 2.10
2752 6866 3.372025 GGCATGATGGACCCTAGTTTCTT 60.372 47.826 0.00 0.00 0.00 2.52
2753 6867 2.173569 GGCATGATGGACCCTAGTTTCT 59.826 50.000 0.00 0.00 0.00 2.52
2754 6868 2.576615 GGCATGATGGACCCTAGTTTC 58.423 52.381 0.00 0.00 0.00 2.78
2755 6869 1.134098 CGGCATGATGGACCCTAGTTT 60.134 52.381 0.00 0.00 0.00 2.66
2756 6870 0.469917 CGGCATGATGGACCCTAGTT 59.530 55.000 0.00 0.00 0.00 2.24
2757 6871 1.410850 CCGGCATGATGGACCCTAGT 61.411 60.000 0.00 0.00 0.00 2.57
2758 6872 1.372683 CCGGCATGATGGACCCTAG 59.627 63.158 0.00 0.00 0.00 3.02
2759 6873 2.146724 CCCGGCATGATGGACCCTA 61.147 63.158 0.00 0.00 0.00 3.53
2760 6874 3.492353 CCCGGCATGATGGACCCT 61.492 66.667 0.00 0.00 0.00 4.34
2761 6875 3.482232 CTCCCGGCATGATGGACCC 62.482 68.421 0.00 0.00 0.00 4.46
2762 6876 2.111878 CTCCCGGCATGATGGACC 59.888 66.667 0.00 0.00 0.00 4.46
2763 6877 1.524621 CACTCCCGGCATGATGGAC 60.525 63.158 0.00 0.00 0.00 4.02
2764 6878 1.056125 ATCACTCCCGGCATGATGGA 61.056 55.000 11.31 0.00 31.84 3.41
2765 6879 0.179009 AATCACTCCCGGCATGATGG 60.179 55.000 12.47 0.00 33.37 3.51
2766 6880 1.202734 AGAATCACTCCCGGCATGATG 60.203 52.381 12.47 0.00 33.37 3.07
2767 6881 1.135094 AGAATCACTCCCGGCATGAT 58.865 50.000 0.00 1.18 34.52 2.45
2768 6882 0.911769 AAGAATCACTCCCGGCATGA 59.088 50.000 0.00 0.00 0.00 3.07
2769 6883 1.303309 GAAGAATCACTCCCGGCATG 58.697 55.000 0.00 0.00 0.00 4.06
2770 6884 0.181350 GGAAGAATCACTCCCGGCAT 59.819 55.000 0.00 0.00 0.00 4.40
2771 6885 1.602237 GGAAGAATCACTCCCGGCA 59.398 57.895 0.00 0.00 0.00 5.69
2772 6886 1.521681 CGGAAGAATCACTCCCGGC 60.522 63.158 0.00 0.00 36.81 6.13
2773 6887 0.460284 CACGGAAGAATCACTCCCGG 60.460 60.000 0.00 0.00 43.98 5.73
2774 6888 0.246635 ACACGGAAGAATCACTCCCG 59.753 55.000 0.00 0.00 45.09 5.14
2775 6889 3.604875 TTACACGGAAGAATCACTCCC 57.395 47.619 0.00 0.00 0.00 4.30
2776 6890 4.504858 ACATTACACGGAAGAATCACTCC 58.495 43.478 0.00 0.00 0.00 3.85
2777 6891 7.201530 CCTTAACATTACACGGAAGAATCACTC 60.202 40.741 0.00 0.00 0.00 3.51
2778 6892 6.594159 CCTTAACATTACACGGAAGAATCACT 59.406 38.462 0.00 0.00 0.00 3.41
2779 6893 6.183360 CCCTTAACATTACACGGAAGAATCAC 60.183 42.308 0.00 0.00 0.00 3.06
2780 6894 5.878116 CCCTTAACATTACACGGAAGAATCA 59.122 40.000 0.00 0.00 0.00 2.57
2781 6895 5.296035 CCCCTTAACATTACACGGAAGAATC 59.704 44.000 0.00 0.00 0.00 2.52
2782 6896 5.190677 CCCCTTAACATTACACGGAAGAAT 58.809 41.667 0.00 0.00 0.00 2.40
2783 6897 4.041938 ACCCCTTAACATTACACGGAAGAA 59.958 41.667 0.00 0.00 0.00 2.52
2784 6898 3.583966 ACCCCTTAACATTACACGGAAGA 59.416 43.478 0.00 0.00 0.00 2.87
2785 6899 3.687698 CACCCCTTAACATTACACGGAAG 59.312 47.826 0.00 0.00 0.00 3.46
2786 6900 3.072768 ACACCCCTTAACATTACACGGAA 59.927 43.478 0.00 0.00 0.00 4.30
2787 6901 2.638855 ACACCCCTTAACATTACACGGA 59.361 45.455 0.00 0.00 0.00 4.69
2788 6902 3.062122 ACACCCCTTAACATTACACGG 57.938 47.619 0.00 0.00 0.00 4.94
2789 6903 4.276431 ACAAACACCCCTTAACATTACACG 59.724 41.667 0.00 0.00 0.00 4.49
2790 6904 5.777850 ACAAACACCCCTTAACATTACAC 57.222 39.130 0.00 0.00 0.00 2.90
2791 6905 6.832384 TGTTACAAACACCCCTTAACATTACA 59.168 34.615 0.00 0.00 36.25 2.41
2792 6906 7.274603 TGTTACAAACACCCCTTAACATTAC 57.725 36.000 0.00 0.00 36.25 1.89
2808 6922 9.832445 AAGAGAGAATAGAGTTTGTGTTACAAA 57.168 29.630 3.20 3.20 44.91 2.83
2835 6949 9.030301 GCAAAAGATTTGCCACGTATATTAATT 57.970 29.630 15.12 0.00 39.38 1.40
2836 6950 8.574196 GCAAAAGATTTGCCACGTATATTAAT 57.426 30.769 15.12 0.00 39.38 1.40
2837 6951 7.979115 GCAAAAGATTTGCCACGTATATTAA 57.021 32.000 15.12 0.00 39.38 1.40
2849 6963 5.411083 TTTTTAACGGGCAAAAGATTTGC 57.589 34.783 17.18 17.18 44.22 3.68
2870 6984 5.306678 TGCTGAGGTGGGTCAATAAATTTTT 59.693 36.000 0.00 0.00 0.00 1.94
2871 6985 4.837860 TGCTGAGGTGGGTCAATAAATTTT 59.162 37.500 0.00 0.00 0.00 1.82
2872 6986 4.415596 TGCTGAGGTGGGTCAATAAATTT 58.584 39.130 0.00 0.00 0.00 1.82
2873 6987 4.019174 CTGCTGAGGTGGGTCAATAAATT 58.981 43.478 0.00 0.00 0.00 1.82
2874 6988 3.624777 CTGCTGAGGTGGGTCAATAAAT 58.375 45.455 0.00 0.00 0.00 1.40
2875 6989 2.879756 GCTGCTGAGGTGGGTCAATAAA 60.880 50.000 0.00 0.00 0.00 1.40
2876 6990 1.340017 GCTGCTGAGGTGGGTCAATAA 60.340 52.381 0.00 0.00 0.00 1.40
2877 6991 0.253044 GCTGCTGAGGTGGGTCAATA 59.747 55.000 0.00 0.00 0.00 1.90
2878 6992 1.001641 GCTGCTGAGGTGGGTCAAT 60.002 57.895 0.00 0.00 0.00 2.57
2879 6993 2.431683 GCTGCTGAGGTGGGTCAA 59.568 61.111 0.00 0.00 0.00 3.18
2880 6994 3.640407 GGCTGCTGAGGTGGGTCA 61.640 66.667 0.00 0.00 0.00 4.02
2881 6995 3.618780 CTGGCTGCTGAGGTGGGTC 62.619 68.421 0.00 0.00 0.00 4.46
2882 6996 3.644606 CTGGCTGCTGAGGTGGGT 61.645 66.667 0.00 0.00 0.00 4.51
2883 6997 4.421515 CCTGGCTGCTGAGGTGGG 62.422 72.222 0.00 0.00 0.00 4.61
2884 6998 4.421515 CCCTGGCTGCTGAGGTGG 62.422 72.222 14.48 3.02 0.00 4.61
2885 6999 3.618780 GACCCTGGCTGCTGAGGTG 62.619 68.421 11.66 8.29 0.00 4.00
2886 7000 3.325753 GACCCTGGCTGCTGAGGT 61.326 66.667 14.48 11.28 0.00 3.85
2887 7001 4.463879 CGACCCTGGCTGCTGAGG 62.464 72.222 10.28 10.28 0.00 3.86
2888 7002 2.351244 TACGACCCTGGCTGCTGAG 61.351 63.158 0.00 0.00 0.00 3.35
2889 7003 2.283604 TACGACCCTGGCTGCTGA 60.284 61.111 0.00 0.00 0.00 4.26
2890 7004 2.125512 GTACGACCCTGGCTGCTG 60.126 66.667 0.00 0.00 0.00 4.41
2891 7005 2.509931 TAGGTACGACCCTGGCTGCT 62.510 60.000 0.00 0.00 39.75 4.24
2892 7006 1.610554 TTAGGTACGACCCTGGCTGC 61.611 60.000 7.72 0.00 39.75 5.25
2893 7007 1.120530 ATTAGGTACGACCCTGGCTG 58.879 55.000 7.72 0.00 39.75 4.85
2894 7008 1.875488 AATTAGGTACGACCCTGGCT 58.125 50.000 7.72 0.00 39.75 4.75
2895 7009 2.704464 AAATTAGGTACGACCCTGGC 57.296 50.000 7.72 0.00 39.75 4.85
2896 7010 5.061179 CCATAAAATTAGGTACGACCCTGG 58.939 45.833 7.72 0.00 39.75 4.45
2897 7011 5.526111 CACCATAAAATTAGGTACGACCCTG 59.474 44.000 7.72 0.00 39.75 4.45
2898 7012 5.190330 ACACCATAAAATTAGGTACGACCCT 59.810 40.000 0.00 0.00 39.75 4.34
2899 7013 5.430886 ACACCATAAAATTAGGTACGACCC 58.569 41.667 0.00 0.00 39.75 4.46
2900 7014 6.990341 AACACCATAAAATTAGGTACGACC 57.010 37.500 0.00 0.00 38.99 4.79
2901 7015 8.291740 ACAAAACACCATAAAATTAGGTACGAC 58.708 33.333 0.00 0.00 33.49 4.34
2902 7016 8.393671 ACAAAACACCATAAAATTAGGTACGA 57.606 30.769 0.00 0.00 33.49 3.43
2915 7029 9.853555 CTCTTTTGCATAATACAAAACACCATA 57.146 29.630 0.00 0.00 40.94 2.74
2916 7030 7.331687 GCTCTTTTGCATAATACAAAACACCAT 59.668 33.333 0.00 0.00 40.94 3.55
2917 7031 6.644592 GCTCTTTTGCATAATACAAAACACCA 59.355 34.615 0.00 0.00 40.94 4.17
2918 7032 6.868339 AGCTCTTTTGCATAATACAAAACACC 59.132 34.615 0.00 0.00 40.94 4.16
2919 7033 7.201266 CGAGCTCTTTTGCATAATACAAAACAC 60.201 37.037 12.85 0.00 40.94 3.32
2920 7034 6.801377 CGAGCTCTTTTGCATAATACAAAACA 59.199 34.615 12.85 0.00 40.94 2.83
2921 7035 6.801862 ACGAGCTCTTTTGCATAATACAAAAC 59.198 34.615 12.85 0.00 40.94 2.43
2922 7036 6.908825 ACGAGCTCTTTTGCATAATACAAAA 58.091 32.000 12.85 0.00 42.93 2.44
2923 7037 6.494893 ACGAGCTCTTTTGCATAATACAAA 57.505 33.333 12.85 0.00 35.30 2.83
2924 7038 6.592220 TGTACGAGCTCTTTTGCATAATACAA 59.408 34.615 12.85 0.00 34.99 2.41
2925 7039 6.103330 TGTACGAGCTCTTTTGCATAATACA 58.897 36.000 12.85 0.00 34.99 2.29
2926 7040 6.583912 TGTACGAGCTCTTTTGCATAATAC 57.416 37.500 12.85 0.00 34.99 1.89
2927 7041 7.279981 ACAATGTACGAGCTCTTTTGCATAATA 59.720 33.333 12.85 0.00 34.99 0.98
2928 7042 6.094048 ACAATGTACGAGCTCTTTTGCATAAT 59.906 34.615 12.85 1.19 34.99 1.28
2929 7043 5.411361 ACAATGTACGAGCTCTTTTGCATAA 59.589 36.000 12.85 0.00 34.99 1.90
2930 7044 4.935205 ACAATGTACGAGCTCTTTTGCATA 59.065 37.500 12.85 0.00 34.99 3.14
2931 7045 3.753272 ACAATGTACGAGCTCTTTTGCAT 59.247 39.130 12.85 8.21 34.99 3.96
2932 7046 3.138304 ACAATGTACGAGCTCTTTTGCA 58.862 40.909 12.85 6.15 34.99 4.08
2933 7047 3.813529 ACAATGTACGAGCTCTTTTGC 57.186 42.857 12.85 0.12 0.00 3.68
2934 7048 6.145534 TCAGTTACAATGTACGAGCTCTTTTG 59.854 38.462 12.85 6.85 0.00 2.44
2935 7049 6.220930 TCAGTTACAATGTACGAGCTCTTTT 58.779 36.000 12.85 0.00 0.00 2.27
2936 7050 5.779922 TCAGTTACAATGTACGAGCTCTTT 58.220 37.500 12.85 0.65 0.00 2.52
2937 7051 5.386958 TCAGTTACAATGTACGAGCTCTT 57.613 39.130 12.85 4.80 0.00 2.85
2938 7052 5.183331 TCTTCAGTTACAATGTACGAGCTCT 59.817 40.000 12.85 1.42 0.00 4.09
2939 7053 5.399858 TCTTCAGTTACAATGTACGAGCTC 58.600 41.667 2.73 2.73 0.00 4.09
2940 7054 5.386958 TCTTCAGTTACAATGTACGAGCT 57.613 39.130 0.00 0.00 0.00 4.09
2941 7055 6.462073 TTTCTTCAGTTACAATGTACGAGC 57.538 37.500 0.00 0.00 0.00 5.03
2969 7083 9.485206 GGTTATTGAGTTAAGAGAGTGTGTTAA 57.515 33.333 0.00 0.00 0.00 2.01
2970 7084 8.644216 TGGTTATTGAGTTAAGAGAGTGTGTTA 58.356 33.333 0.00 0.00 0.00 2.41
2971 7085 7.506114 TGGTTATTGAGTTAAGAGAGTGTGTT 58.494 34.615 0.00 0.00 0.00 3.32
2972 7086 7.062749 TGGTTATTGAGTTAAGAGAGTGTGT 57.937 36.000 0.00 0.00 0.00 3.72
2973 7087 7.819415 TCATGGTTATTGAGTTAAGAGAGTGTG 59.181 37.037 0.00 0.00 0.00 3.82
2974 7088 7.819900 GTCATGGTTATTGAGTTAAGAGAGTGT 59.180 37.037 0.00 0.00 0.00 3.55
2975 7089 8.037758 AGTCATGGTTATTGAGTTAAGAGAGTG 58.962 37.037 0.00 0.00 0.00 3.51
2976 7090 8.140112 AGTCATGGTTATTGAGTTAAGAGAGT 57.860 34.615 0.00 0.00 0.00 3.24
2977 7091 8.253810 TGAGTCATGGTTATTGAGTTAAGAGAG 58.746 37.037 0.00 0.00 0.00 3.20
2978 7092 8.134202 TGAGTCATGGTTATTGAGTTAAGAGA 57.866 34.615 0.00 0.00 0.00 3.10
2979 7093 8.777865 TTGAGTCATGGTTATTGAGTTAAGAG 57.222 34.615 0.00 0.00 0.00 2.85
2980 7094 9.567776 TTTTGAGTCATGGTTATTGAGTTAAGA 57.432 29.630 0.00 0.00 0.00 2.10
2982 7096 9.959749 GTTTTTGAGTCATGGTTATTGAGTTAA 57.040 29.630 0.00 0.00 0.00 2.01
2983 7097 8.573035 GGTTTTTGAGTCATGGTTATTGAGTTA 58.427 33.333 0.00 0.00 0.00 2.24
2984 7098 7.287696 AGGTTTTTGAGTCATGGTTATTGAGTT 59.712 33.333 0.00 0.00 0.00 3.01
2985 7099 6.777580 AGGTTTTTGAGTCATGGTTATTGAGT 59.222 34.615 0.00 0.00 0.00 3.41
2986 7100 7.040478 TGAGGTTTTTGAGTCATGGTTATTGAG 60.040 37.037 0.00 0.00 0.00 3.02
2987 7101 6.775142 TGAGGTTTTTGAGTCATGGTTATTGA 59.225 34.615 0.00 0.00 0.00 2.57
2988 7102 6.980593 TGAGGTTTTTGAGTCATGGTTATTG 58.019 36.000 0.00 0.00 0.00 1.90
2989 7103 7.595819 TTGAGGTTTTTGAGTCATGGTTATT 57.404 32.000 0.00 0.00 0.00 1.40
2990 7104 7.781324 ATTGAGGTTTTTGAGTCATGGTTAT 57.219 32.000 0.00 0.00 0.00 1.89
2991 7105 7.393234 CCTATTGAGGTTTTTGAGTCATGGTTA 59.607 37.037 0.00 0.00 38.16 2.85
2992 7106 6.209391 CCTATTGAGGTTTTTGAGTCATGGTT 59.791 38.462 0.00 0.00 38.16 3.67
2993 7107 5.711976 CCTATTGAGGTTTTTGAGTCATGGT 59.288 40.000 0.00 0.00 38.16 3.55
2994 7108 6.199937 CCTATTGAGGTTTTTGAGTCATGG 57.800 41.667 0.00 0.00 38.16 3.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.