Multiple sequence alignment - TraesCS5D01G072500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G072500 chr5D 100.000 4054 0 0 1 4054 72201796 72205849 0.000000e+00 7487
1 TraesCS5D01G072500 chr5B 94.213 2886 109 22 546 3395 82250026 82247163 0.000000e+00 4351
2 TraesCS5D01G072500 chr5B 96.479 142 4 1 3399 3540 82246971 82246831 2.440000e-57 233
3 TraesCS5D01G072500 chr5A 95.546 1190 37 5 2366 3540 64656741 64657929 0.000000e+00 1890
4 TraesCS5D01G072500 chr5A 96.569 816 18 7 1522 2333 64655933 64656742 0.000000e+00 1343
5 TraesCS5D01G072500 chr5A 90.709 1001 38 18 548 1523 64654858 64655828 0.000000e+00 1282
6 TraesCS5D01G072500 chr5A 95.935 123 5 0 3684 3806 64657923 64658045 2.470000e-47 200
7 TraesCS5D01G072500 chr1D 93.763 497 26 3 2 494 49964837 49965332 0.000000e+00 741
8 TraesCS5D01G072500 chr1D 91.600 500 35 6 2 494 441213074 441212575 0.000000e+00 684
9 TraesCS5D01G072500 chr2D 93.200 500 27 5 2 494 591442163 591441664 0.000000e+00 728
10 TraesCS5D01G072500 chr7D 92.915 494 34 1 2 494 365263939 365263446 0.000000e+00 717
11 TraesCS5D01G072500 chr6D 92.247 503 29 2 2 494 2012958 2012456 0.000000e+00 704
12 TraesCS5D01G072500 chr3D 92.445 503 22 8 2 494 461442205 461441709 0.000000e+00 704
13 TraesCS5D01G072500 chr4B 92.079 505 28 7 2 494 148217477 148216973 0.000000e+00 701
14 TraesCS5D01G072500 chr4A 92.121 495 35 2 2 492 300529589 300529095 0.000000e+00 695
15 TraesCS5D01G072500 chr1A 91.903 494 39 1 2 494 459077181 459076688 0.000000e+00 689


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G072500 chr5D 72201796 72205849 4053 False 7487.00 7487 100.00000 1 4054 1 chr5D.!!$F1 4053
1 TraesCS5D01G072500 chr5B 82246831 82250026 3195 True 2292.00 4351 95.34600 546 3540 2 chr5B.!!$R1 2994
2 TraesCS5D01G072500 chr5A 64654858 64658045 3187 False 1178.75 1890 94.68975 548 3806 4 chr5A.!!$F1 3258
3 TraesCS5D01G072500 chr6D 2012456 2012958 502 True 704.00 704 92.24700 2 494 1 chr6D.!!$R1 492
4 TraesCS5D01G072500 chr4B 148216973 148217477 504 True 701.00 701 92.07900 2 494 1 chr4B.!!$R1 492

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
123 124 0.110486 AAGAGGTGACGCCAATGGTT 59.890 50.0 7.99 0.00 40.61 3.67 F
1139 1172 0.457851 AAGATCTCCGGCGTCAAGAG 59.542 55.0 6.01 5.27 0.00 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2054 2220 1.814394 AGCTGCGAGAAAATGATGCAA 59.186 42.857 0.0 0.0 34.78 4.08 R
3053 3240 2.092158 CCCCTTCCTTCCATCCTTCTTC 60.092 54.545 0.0 0.0 0.00 2.87 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 2.242965 AGATCATCCTTGACCCATTGCA 59.757 45.455 0.00 0.00 33.85 4.08
33 34 2.601240 TCATCCTTGACCCATTGCAA 57.399 45.000 0.00 0.00 0.00 4.08
123 124 0.110486 AAGAGGTGACGCCAATGGTT 59.890 50.000 7.99 0.00 40.61 3.67
435 456 6.437793 AGAAGTATATATAAGAGCCAAGCCGT 59.562 38.462 0.00 0.00 0.00 5.68
460 481 5.657474 TCTGACCTAGCCTTATTACAAACG 58.343 41.667 0.00 0.00 0.00 3.60
471 493 5.128335 CCTTATTACAAACGGGTAGGAGTCT 59.872 44.000 0.00 0.00 0.00 3.24
543 565 5.906113 TTTTTGTTCTTAGTGACTTGCCA 57.094 34.783 0.00 0.00 0.00 4.92
544 566 6.463995 TTTTTGTTCTTAGTGACTTGCCAT 57.536 33.333 0.00 0.00 0.00 4.40
555 577 3.505680 GTGACTTGCCATCACCACAATAA 59.494 43.478 1.61 0.00 40.56 1.40
593 616 6.712241 TTTACTCTCATTTCAGAGAAAGCG 57.288 37.500 4.48 0.00 43.58 4.68
612 635 1.333169 CGGCATCCAAATTCGTCATCG 60.333 52.381 0.00 0.00 38.55 3.84
640 663 5.613358 ATGTTTTTCGCTAGACTGGAAAG 57.387 39.130 0.00 0.00 31.94 2.62
650 673 3.113260 AGACTGGAAAGAGGACGTTTG 57.887 47.619 0.00 0.00 0.00 2.93
680 703 3.530265 ACGTGGTCACTAAGTTTGACA 57.470 42.857 9.36 0.00 44.47 3.58
813 837 1.531149 CGAGTCACAGCGTTCCAATTT 59.469 47.619 0.00 0.00 0.00 1.82
816 840 1.068541 GTCACAGCGTTCCAATTTCCC 60.069 52.381 0.00 0.00 0.00 3.97
924 957 2.997315 CGCTGGGGGTCTGAGTCA 60.997 66.667 0.00 0.00 0.00 3.41
998 1031 3.905705 GATCCATCTCTCCGCGCGG 62.906 68.421 42.13 42.13 0.00 6.46
1139 1172 0.457851 AAGATCTCCGGCGTCAAGAG 59.542 55.000 6.01 5.27 0.00 2.85
1185 1218 5.511545 CCTCATAATGGTACCTAGCTTGTCC 60.512 48.000 14.36 0.00 0.00 4.02
1287 1329 4.094442 GCAAAGTAGGCATACAGGTGTTAC 59.906 45.833 11.63 0.00 34.07 2.50
1291 1333 5.516984 AGTAGGCATACAGGTGTTACTACT 58.483 41.667 11.63 0.00 36.14 2.57
1292 1334 4.737855 AGGCATACAGGTGTTACTACTG 57.262 45.455 5.59 5.59 38.19 2.74
1298 1340 0.613777 AGGTGTTACTACTGCTGCCC 59.386 55.000 0.00 0.00 0.00 5.36
1331 1373 0.948678 TCAAGGTTAACCAACGCAGC 59.051 50.000 26.26 0.00 38.89 5.25
1351 1393 8.028938 ACGCAGCAATCTTGTCTTATTAATTTT 58.971 29.630 0.00 0.00 0.00 1.82
1352 1394 8.863049 CGCAGCAATCTTGTCTTATTAATTTTT 58.137 29.630 0.00 0.00 0.00 1.94
1392 1438 8.344098 CAGTAGCAGTACCTAACAACTAGTATC 58.656 40.741 0.00 0.00 0.00 2.24
1596 1747 5.817296 ACTTTCCCTTTCATGTTTTCTTTGC 59.183 36.000 0.00 0.00 0.00 3.68
1619 1770 8.574251 TGCACAGTATACAAAAGGTCATATTT 57.426 30.769 5.50 0.00 0.00 1.40
1874 2037 6.362820 GCTGTCGTAATTAGCAGTATCTAACC 59.637 42.308 11.10 0.00 37.40 2.85
1876 2039 8.004087 TGTCGTAATTAGCAGTATCTAACCTT 57.996 34.615 0.00 0.00 32.02 3.50
2054 2220 3.266772 TCTTGGCATTTACTCATGGACCT 59.733 43.478 0.00 0.00 0.00 3.85
2207 2373 7.377766 TGAAGGTATTCTAAGTTGAATGCAC 57.622 36.000 13.65 5.89 39.63 4.57
2430 2602 0.881118 GTGCTTGAATTTGCCGAGGA 59.119 50.000 0.00 0.00 0.00 3.71
2483 2658 4.085876 CACTTCCCTGGCCAAGTG 57.914 61.111 18.44 18.44 42.62 3.16
2526 2701 5.238214 GCAAGTGTCTATTCATCCATTCTCC 59.762 44.000 0.00 0.00 0.00 3.71
2542 2717 5.392380 CCATTCTCCGATGAACTTCCTTTTG 60.392 44.000 0.00 0.00 0.00 2.44
2543 2719 4.617253 TCTCCGATGAACTTCCTTTTGA 57.383 40.909 0.00 0.00 0.00 2.69
2555 2731 5.862924 CTTCCTTTTGAAGCGAGTAATGA 57.137 39.130 0.00 0.00 43.79 2.57
2742 2918 4.566545 TTTTTCTGCTCATCGAAAAGCA 57.433 36.364 20.03 20.03 45.83 3.91
2779 2955 8.920509 AATACATGAGCAATATATAACGCGTA 57.079 30.769 14.46 0.00 0.00 4.42
2903 3079 1.352017 CATCATGCTGGTATGGCCCTA 59.648 52.381 0.00 0.00 36.04 3.53
3053 3240 2.663602 CGGCGCTAGTAAGAATGCATAG 59.336 50.000 7.64 0.00 0.00 2.23
3141 3328 7.693951 AGCGATTTTCTCAGTTCATTTTTATCG 59.306 33.333 0.00 0.00 34.72 2.92
3197 3384 3.357203 TGAGCATCGAGAACCTAGAGTT 58.643 45.455 0.00 0.00 39.09 3.01
3218 3405 8.947115 AGAGTTAATGTTTCAACTAAGTATGCC 58.053 33.333 0.00 0.00 35.17 4.40
3253 3440 0.402121 AGAGTCCCTTTCTTGCCACC 59.598 55.000 0.00 0.00 0.00 4.61
3290 3477 8.406297 CCCTACAAAGCAAAAATTATCCTCTAC 58.594 37.037 0.00 0.00 0.00 2.59
3387 3574 4.573900 ACATGCTCTGAGGTTTGTAGAAG 58.426 43.478 6.83 0.00 0.00 2.85
3422 3797 3.072184 AGCAGAAGTGAACCTCATGTCTT 59.928 43.478 0.00 0.00 0.00 3.01
3530 3905 7.071698 AGAGATGCCAGAAGGTGATAGATAAAA 59.928 37.037 0.00 0.00 37.19 1.52
3531 3906 7.753630 AGATGCCAGAAGGTGATAGATAAAAT 58.246 34.615 0.00 0.00 37.19 1.82
3532 3907 7.664731 AGATGCCAGAAGGTGATAGATAAAATG 59.335 37.037 0.00 0.00 37.19 2.32
3533 3908 6.064060 TGCCAGAAGGTGATAGATAAAATGG 58.936 40.000 0.00 0.00 37.19 3.16
3534 3909 5.474876 GCCAGAAGGTGATAGATAAAATGGG 59.525 44.000 0.00 0.00 37.19 4.00
3535 3910 5.474876 CCAGAAGGTGATAGATAAAATGGGC 59.525 44.000 0.00 0.00 0.00 5.36
3536 3911 5.474876 CAGAAGGTGATAGATAAAATGGGCC 59.525 44.000 0.00 0.00 0.00 5.80
3537 3912 4.388577 AGGTGATAGATAAAATGGGCCC 57.611 45.455 17.59 17.59 0.00 5.80
3538 3913 3.990245 AGGTGATAGATAAAATGGGCCCT 59.010 43.478 25.70 4.56 0.00 5.19
3539 3914 4.082125 GGTGATAGATAAAATGGGCCCTG 58.918 47.826 25.70 0.00 0.00 4.45
3540 3915 4.202567 GGTGATAGATAAAATGGGCCCTGA 60.203 45.833 25.70 2.97 0.00 3.86
3541 3916 5.385198 GTGATAGATAAAATGGGCCCTGAA 58.615 41.667 25.70 2.00 0.00 3.02
3542 3917 5.833131 GTGATAGATAAAATGGGCCCTGAAA 59.167 40.000 25.70 1.52 0.00 2.69
3543 3918 5.833131 TGATAGATAAAATGGGCCCTGAAAC 59.167 40.000 25.70 8.51 0.00 2.78
3544 3919 4.337264 AGATAAAATGGGCCCTGAAACT 57.663 40.909 25.70 10.73 0.00 2.66
3545 3920 4.026052 AGATAAAATGGGCCCTGAAACTG 58.974 43.478 25.70 0.00 0.00 3.16
3546 3921 0.686789 AAAATGGGCCCTGAAACTGC 59.313 50.000 25.70 0.00 0.00 4.40
3547 3922 0.178924 AAATGGGCCCTGAAACTGCT 60.179 50.000 25.70 0.00 0.00 4.24
3548 3923 0.613012 AATGGGCCCTGAAACTGCTC 60.613 55.000 25.70 0.00 0.00 4.26
3549 3924 2.361737 GGGCCCTGAAACTGCTCC 60.362 66.667 17.04 0.00 0.00 4.70
3550 3925 2.747855 GGCCCTGAAACTGCTCCG 60.748 66.667 0.00 0.00 0.00 4.63
3551 3926 2.032681 GCCCTGAAACTGCTCCGT 59.967 61.111 0.00 0.00 0.00 4.69
3552 3927 2.328099 GCCCTGAAACTGCTCCGTG 61.328 63.158 0.00 0.00 0.00 4.94
3553 3928 2.328099 CCCTGAAACTGCTCCGTGC 61.328 63.158 0.00 0.00 43.25 5.34
3562 3937 3.876300 GCTCCGTGCACGATCTTT 58.124 55.556 39.10 0.00 43.02 2.52
3563 3938 3.044809 GCTCCGTGCACGATCTTTA 57.955 52.632 39.10 15.84 43.02 1.85
3564 3939 1.571919 GCTCCGTGCACGATCTTTAT 58.428 50.000 39.10 0.00 43.02 1.40
3565 3940 1.258982 GCTCCGTGCACGATCTTTATG 59.741 52.381 39.10 20.03 43.02 1.90
3566 3941 1.860950 CTCCGTGCACGATCTTTATGG 59.139 52.381 39.10 19.30 43.02 2.74
3567 3942 0.304705 CCGTGCACGATCTTTATGGC 59.695 55.000 39.10 0.00 43.02 4.40
3568 3943 0.304705 CGTGCACGATCTTTATGGCC 59.695 55.000 34.93 0.00 43.02 5.36
3569 3944 0.304705 GTGCACGATCTTTATGGCCG 59.695 55.000 0.00 0.00 0.00 6.13
3570 3945 0.176910 TGCACGATCTTTATGGCCGA 59.823 50.000 0.00 0.00 0.00 5.54
3571 3946 0.582005 GCACGATCTTTATGGCCGAC 59.418 55.000 0.00 0.00 0.00 4.79
3572 3947 1.934589 CACGATCTTTATGGCCGACA 58.065 50.000 0.00 0.00 0.00 4.35
3573 3948 2.483876 CACGATCTTTATGGCCGACAT 58.516 47.619 0.00 0.00 43.68 3.06
3574 3949 3.649073 CACGATCTTTATGGCCGACATA 58.351 45.455 0.00 0.00 41.03 2.29
3575 3950 4.245660 CACGATCTTTATGGCCGACATAT 58.754 43.478 0.00 0.00 41.49 1.78
3576 3951 4.091945 CACGATCTTTATGGCCGACATATG 59.908 45.833 0.00 0.00 41.49 1.78
3577 3952 3.062639 CGATCTTTATGGCCGACATATGC 59.937 47.826 1.58 0.00 41.49 3.14
3578 3953 3.483808 TCTTTATGGCCGACATATGCA 57.516 42.857 1.58 0.00 41.49 3.96
3579 3954 3.138304 TCTTTATGGCCGACATATGCAC 58.862 45.455 1.58 0.00 41.49 4.57
3580 3955 1.890876 TTATGGCCGACATATGCACC 58.109 50.000 1.58 0.00 41.49 5.01
3581 3956 0.761802 TATGGCCGACATATGCACCA 59.238 50.000 1.58 5.87 41.03 4.17
3582 3957 0.819259 ATGGCCGACATATGCACCAC 60.819 55.000 1.58 0.00 38.26 4.16
3583 3958 2.534019 GGCCGACATATGCACCACG 61.534 63.158 1.58 1.72 0.00 4.94
3584 3959 1.813753 GCCGACATATGCACCACGT 60.814 57.895 1.58 0.00 0.00 4.49
3585 3960 2.005995 CCGACATATGCACCACGTG 58.994 57.895 9.08 9.08 36.51 4.49
3586 3961 0.739462 CCGACATATGCACCACGTGT 60.739 55.000 15.65 0.00 35.75 4.49
3587 3962 1.470112 CCGACATATGCACCACGTGTA 60.470 52.381 15.65 0.00 35.75 2.90
3588 3963 2.263945 CGACATATGCACCACGTGTAA 58.736 47.619 15.65 0.00 35.75 2.41
3589 3964 2.863740 CGACATATGCACCACGTGTAAT 59.136 45.455 15.65 4.90 35.75 1.89
3590 3965 3.060540 CGACATATGCACCACGTGTAATC 60.061 47.826 15.65 1.18 35.75 1.75
3591 3966 3.202906 ACATATGCACCACGTGTAATCC 58.797 45.455 15.65 0.00 35.75 3.01
3592 3967 1.929230 TATGCACCACGTGTAATCCG 58.071 50.000 15.65 0.00 35.75 4.18
3593 3968 0.742990 ATGCACCACGTGTAATCCGG 60.743 55.000 15.65 0.00 35.75 5.14
3594 3969 2.746803 GCACCACGTGTAATCCGGC 61.747 63.158 15.65 3.38 35.75 6.13
3595 3970 2.125832 ACCACGTGTAATCCGGCG 60.126 61.111 15.65 0.00 0.00 6.46
3596 3971 2.888534 CCACGTGTAATCCGGCGG 60.889 66.667 22.51 22.51 0.00 6.13
3597 3972 3.560278 CACGTGTAATCCGGCGGC 61.560 66.667 23.83 7.83 0.00 6.53
3598 3973 4.825252 ACGTGTAATCCGGCGGCC 62.825 66.667 23.83 9.54 0.00 6.13
3610 3985 4.752879 GCGGCCGGTGCTACTTGA 62.753 66.667 29.38 0.00 37.74 3.02
3611 3986 2.047655 CGGCCGGTGCTACTTGAA 60.048 61.111 20.10 0.00 37.74 2.69
3612 3987 1.449601 CGGCCGGTGCTACTTGAAT 60.450 57.895 20.10 0.00 37.74 2.57
3613 3988 1.429148 CGGCCGGTGCTACTTGAATC 61.429 60.000 20.10 0.00 37.74 2.52
3614 3989 0.392461 GGCCGGTGCTACTTGAATCA 60.392 55.000 1.90 0.00 37.74 2.57
3615 3990 1.668419 GCCGGTGCTACTTGAATCAT 58.332 50.000 1.90 0.00 33.53 2.45
3616 3991 2.484770 GGCCGGTGCTACTTGAATCATA 60.485 50.000 1.90 0.00 37.74 2.15
3617 3992 2.544267 GCCGGTGCTACTTGAATCATAC 59.456 50.000 1.90 0.00 33.53 2.39
3618 3993 2.794910 CCGGTGCTACTTGAATCATACG 59.205 50.000 0.00 0.00 0.00 3.06
3619 3994 2.218759 CGGTGCTACTTGAATCATACGC 59.781 50.000 0.00 0.00 0.00 4.42
3620 3995 3.194861 GGTGCTACTTGAATCATACGCA 58.805 45.455 0.00 0.00 0.00 5.24
3621 3996 3.809832 GGTGCTACTTGAATCATACGCAT 59.190 43.478 0.00 0.00 0.00 4.73
3622 3997 4.319046 GGTGCTACTTGAATCATACGCATG 60.319 45.833 0.00 0.00 0.00 4.06
3623 3998 4.271049 GTGCTACTTGAATCATACGCATGT 59.729 41.667 0.00 0.00 33.57 3.21
3624 3999 5.462068 GTGCTACTTGAATCATACGCATGTA 59.538 40.000 0.00 0.00 33.57 2.29
3625 4000 5.462068 TGCTACTTGAATCATACGCATGTAC 59.538 40.000 0.00 0.00 32.26 2.90
3626 4001 5.387444 GCTACTTGAATCATACGCATGTACG 60.387 44.000 0.00 0.00 39.50 3.67
3627 4002 3.802139 ACTTGAATCATACGCATGTACGG 59.198 43.478 0.00 0.00 37.37 4.02
3628 4003 2.131972 TGAATCATACGCATGTACGGC 58.868 47.619 0.00 0.00 37.37 5.68
3629 4004 1.459592 GAATCATACGCATGTACGGCC 59.540 52.381 0.00 0.00 37.37 6.13
3630 4005 0.666274 ATCATACGCATGTACGGCCG 60.666 55.000 26.86 26.86 37.37 6.13
3631 4006 2.028484 ATACGCATGTACGGCCGG 59.972 61.111 31.76 12.50 37.37 6.13
3632 4007 2.491897 ATACGCATGTACGGCCGGA 61.492 57.895 31.76 21.43 37.37 5.14
3633 4008 1.812686 ATACGCATGTACGGCCGGAT 61.813 55.000 31.76 15.48 37.37 4.18
3634 4009 2.018727 TACGCATGTACGGCCGGATT 62.019 55.000 31.76 11.61 37.37 3.01
3635 4010 2.594962 CGCATGTACGGCCGGATTC 61.595 63.158 31.76 11.15 0.00 2.52
3636 4011 1.522806 GCATGTACGGCCGGATTCA 60.523 57.895 31.76 17.54 0.00 2.57
3637 4012 1.772063 GCATGTACGGCCGGATTCAC 61.772 60.000 31.76 18.20 0.00 3.18
3638 4013 0.179084 CATGTACGGCCGGATTCACT 60.179 55.000 31.76 9.01 0.00 3.41
3639 4014 1.067974 CATGTACGGCCGGATTCACTA 59.932 52.381 31.76 7.81 0.00 2.74
3640 4015 1.184431 TGTACGGCCGGATTCACTAA 58.816 50.000 31.76 0.76 0.00 2.24
3641 4016 1.758280 TGTACGGCCGGATTCACTAAT 59.242 47.619 31.76 6.43 0.00 1.73
3642 4017 2.132762 GTACGGCCGGATTCACTAATG 58.867 52.381 31.76 0.00 0.00 1.90
3643 4018 0.179056 ACGGCCGGATTCACTAATGG 60.179 55.000 31.76 0.00 0.00 3.16
3644 4019 0.179056 CGGCCGGATTCACTAATGGT 60.179 55.000 20.10 0.00 0.00 3.55
3645 4020 1.308998 GGCCGGATTCACTAATGGTG 58.691 55.000 5.05 0.00 46.60 4.17
3646 4021 0.663153 GCCGGATTCACTAATGGTGC 59.337 55.000 5.05 0.00 44.98 5.01
3647 4022 0.937304 CCGGATTCACTAATGGTGCG 59.063 55.000 0.00 0.00 44.98 5.34
3648 4023 1.651987 CGGATTCACTAATGGTGCGT 58.348 50.000 0.00 0.00 44.98 5.24
3649 4024 1.327460 CGGATTCACTAATGGTGCGTG 59.673 52.381 0.00 0.00 44.98 5.34
3650 4025 2.627945 GGATTCACTAATGGTGCGTGA 58.372 47.619 0.00 0.00 44.98 4.35
3654 4029 2.267426 TCACTAATGGTGCGTGAATCG 58.733 47.619 0.00 0.00 44.98 3.34
3655 4030 1.999735 CACTAATGGTGCGTGAATCGT 59.000 47.619 0.00 0.00 42.13 3.73
3656 4031 2.029244 CACTAATGGTGCGTGAATCGTC 59.971 50.000 0.00 0.00 42.13 4.20
3657 4032 1.593006 CTAATGGTGCGTGAATCGTCC 59.407 52.381 0.00 0.00 42.13 4.79
3658 4033 0.321210 AATGGTGCGTGAATCGTCCA 60.321 50.000 0.00 0.00 44.02 4.02
3659 4034 0.740868 ATGGTGCGTGAATCGTCCAG 60.741 55.000 10.33 0.00 43.55 3.86
3660 4035 1.374252 GGTGCGTGAATCGTCCAGT 60.374 57.895 0.00 0.00 42.13 4.00
3661 4036 0.949105 GGTGCGTGAATCGTCCAGTT 60.949 55.000 0.00 0.00 42.13 3.16
3662 4037 0.865769 GTGCGTGAATCGTCCAGTTT 59.134 50.000 0.00 0.00 42.13 2.66
3663 4038 1.263217 GTGCGTGAATCGTCCAGTTTT 59.737 47.619 0.00 0.00 42.13 2.43
3664 4039 1.944024 TGCGTGAATCGTCCAGTTTTT 59.056 42.857 0.00 0.00 42.13 1.94
3665 4040 2.286713 TGCGTGAATCGTCCAGTTTTTG 60.287 45.455 0.00 0.00 42.13 2.44
3666 4041 2.286772 GCGTGAATCGTCCAGTTTTTGT 60.287 45.455 0.00 0.00 42.13 2.83
3667 4042 3.541711 CGTGAATCGTCCAGTTTTTGTC 58.458 45.455 0.00 0.00 34.52 3.18
3668 4043 3.541711 GTGAATCGTCCAGTTTTTGTCG 58.458 45.455 0.00 0.00 0.00 4.35
3669 4044 3.001939 GTGAATCGTCCAGTTTTTGTCGT 59.998 43.478 0.00 0.00 0.00 4.34
3670 4045 3.001838 TGAATCGTCCAGTTTTTGTCGTG 59.998 43.478 0.00 0.00 0.00 4.35
3671 4046 2.012937 TCGTCCAGTTTTTGTCGTGT 57.987 45.000 0.00 0.00 0.00 4.49
3672 4047 1.661617 TCGTCCAGTTTTTGTCGTGTG 59.338 47.619 0.00 0.00 0.00 3.82
3673 4048 1.822581 GTCCAGTTTTTGTCGTGTGC 58.177 50.000 0.00 0.00 0.00 4.57
3674 4049 1.131504 GTCCAGTTTTTGTCGTGTGCA 59.868 47.619 0.00 0.00 0.00 4.57
3675 4050 2.020720 TCCAGTTTTTGTCGTGTGCAT 58.979 42.857 0.00 0.00 0.00 3.96
3676 4051 3.002862 GTCCAGTTTTTGTCGTGTGCATA 59.997 43.478 0.00 0.00 0.00 3.14
3677 4052 3.249799 TCCAGTTTTTGTCGTGTGCATAG 59.750 43.478 0.00 0.00 0.00 2.23
3678 4053 2.973224 CAGTTTTTGTCGTGTGCATAGC 59.027 45.455 0.00 0.00 0.00 2.97
3679 4054 2.616376 AGTTTTTGTCGTGTGCATAGCA 59.384 40.909 0.00 0.00 35.60 3.49
3766 4141 0.739462 CCATGTGCACGTACGTCCAT 60.739 55.000 19.94 17.05 0.00 3.41
3775 4150 3.364062 CACGTACGTCCATGATCTTCTC 58.636 50.000 19.94 0.00 0.00 2.87
3806 4181 0.596577 TGGTTGTCTTCTCTCGTCCG 59.403 55.000 0.00 0.00 0.00 4.79
3807 4182 0.733223 GGTTGTCTTCTCTCGTCCGC 60.733 60.000 0.00 0.00 0.00 5.54
3808 4183 0.733223 GTTGTCTTCTCTCGTCCGCC 60.733 60.000 0.00 0.00 0.00 6.13
3809 4184 0.894184 TTGTCTTCTCTCGTCCGCCT 60.894 55.000 0.00 0.00 0.00 5.52
3810 4185 1.306642 TGTCTTCTCTCGTCCGCCTC 61.307 60.000 0.00 0.00 0.00 4.70
3811 4186 1.027792 GTCTTCTCTCGTCCGCCTCT 61.028 60.000 0.00 0.00 0.00 3.69
3812 4187 0.745128 TCTTCTCTCGTCCGCCTCTC 60.745 60.000 0.00 0.00 0.00 3.20
3813 4188 1.002502 TTCTCTCGTCCGCCTCTCA 60.003 57.895 0.00 0.00 0.00 3.27
3814 4189 0.608308 TTCTCTCGTCCGCCTCTCAA 60.608 55.000 0.00 0.00 0.00 3.02
3815 4190 1.137825 CTCTCGTCCGCCTCTCAAC 59.862 63.158 0.00 0.00 0.00 3.18
3816 4191 1.587043 CTCTCGTCCGCCTCTCAACA 61.587 60.000 0.00 0.00 0.00 3.33
3817 4192 1.444553 CTCGTCCGCCTCTCAACAC 60.445 63.158 0.00 0.00 0.00 3.32
3818 4193 2.805353 CGTCCGCCTCTCAACACG 60.805 66.667 0.00 0.00 0.00 4.49
3819 4194 2.432628 GTCCGCCTCTCAACACGG 60.433 66.667 0.00 0.00 46.97 4.94
3820 4195 3.691342 TCCGCCTCTCAACACGGG 61.691 66.667 0.00 0.00 45.65 5.28
3821 4196 4.760047 CCGCCTCTCAACACGGGG 62.760 72.222 0.00 0.00 41.95 5.73
3822 4197 4.760047 CGCCTCTCAACACGGGGG 62.760 72.222 0.00 0.00 0.00 5.40
3823 4198 3.319198 GCCTCTCAACACGGGGGA 61.319 66.667 0.00 0.00 0.00 4.81
3824 4199 2.663196 CCTCTCAACACGGGGGAC 59.337 66.667 0.00 0.00 0.00 4.46
3837 4212 4.678743 GGGACCCACACCCTTGCC 62.679 72.222 5.33 0.00 43.65 4.52
3838 4213 3.580319 GGACCCACACCCTTGCCT 61.580 66.667 0.00 0.00 0.00 4.75
3839 4214 2.034221 GACCCACACCCTTGCCTC 59.966 66.667 0.00 0.00 0.00 4.70
3840 4215 3.569200 GACCCACACCCTTGCCTCC 62.569 68.421 0.00 0.00 0.00 4.30
3841 4216 3.260100 CCCACACCCTTGCCTCCT 61.260 66.667 0.00 0.00 0.00 3.69
3842 4217 2.034687 CCACACCCTTGCCTCCTG 59.965 66.667 0.00 0.00 0.00 3.86
3843 4218 2.674380 CACACCCTTGCCTCCTGC 60.674 66.667 0.00 0.00 41.77 4.85
3844 4219 3.971702 ACACCCTTGCCTCCTGCC 61.972 66.667 0.00 0.00 40.16 4.85
3845 4220 4.748144 CACCCTTGCCTCCTGCCC 62.748 72.222 0.00 0.00 40.16 5.36
3857 4232 3.793144 CTGCCCGCAGCTTCGTTC 61.793 66.667 4.79 0.00 44.23 3.95
3860 4235 2.815647 CCCGCAGCTTCGTTCCTC 60.816 66.667 4.79 0.00 0.00 3.71
3861 4236 2.262915 CCGCAGCTTCGTTCCTCT 59.737 61.111 4.79 0.00 0.00 3.69
3862 4237 1.807573 CCGCAGCTTCGTTCCTCTC 60.808 63.158 4.79 0.00 0.00 3.20
3863 4238 2.155194 CGCAGCTTCGTTCCTCTCG 61.155 63.158 0.00 0.00 0.00 4.04
3864 4239 2.448705 GCAGCTTCGTTCCTCTCGC 61.449 63.158 0.00 0.00 0.00 5.03
3865 4240 1.080501 CAGCTTCGTTCCTCTCGCA 60.081 57.895 0.00 0.00 0.00 5.10
3866 4241 1.075425 CAGCTTCGTTCCTCTCGCAG 61.075 60.000 0.00 0.00 0.00 5.18
3867 4242 2.448705 GCTTCGTTCCTCTCGCAGC 61.449 63.158 0.00 0.00 39.72 5.25
3868 4243 1.080501 CTTCGTTCCTCTCGCAGCA 60.081 57.895 0.00 0.00 0.00 4.41
3869 4244 0.667487 CTTCGTTCCTCTCGCAGCAA 60.667 55.000 0.00 0.00 0.00 3.91
3870 4245 0.037326 TTCGTTCCTCTCGCAGCAAT 60.037 50.000 0.00 0.00 0.00 3.56
3871 4246 0.815095 TCGTTCCTCTCGCAGCAATA 59.185 50.000 0.00 0.00 0.00 1.90
3872 4247 1.409064 TCGTTCCTCTCGCAGCAATAT 59.591 47.619 0.00 0.00 0.00 1.28
3873 4248 1.789464 CGTTCCTCTCGCAGCAATATC 59.211 52.381 0.00 0.00 0.00 1.63
3874 4249 2.799562 CGTTCCTCTCGCAGCAATATCA 60.800 50.000 0.00 0.00 0.00 2.15
3875 4250 2.515926 TCCTCTCGCAGCAATATCAC 57.484 50.000 0.00 0.00 0.00 3.06
3876 4251 2.034878 TCCTCTCGCAGCAATATCACT 58.965 47.619 0.00 0.00 0.00 3.41
3877 4252 3.222603 TCCTCTCGCAGCAATATCACTA 58.777 45.455 0.00 0.00 0.00 2.74
3878 4253 3.254411 TCCTCTCGCAGCAATATCACTAG 59.746 47.826 0.00 0.00 0.00 2.57
3879 4254 2.985809 CTCTCGCAGCAATATCACTAGC 59.014 50.000 0.00 0.00 0.00 3.42
3880 4255 2.064762 CTCGCAGCAATATCACTAGCC 58.935 52.381 0.00 0.00 0.00 3.93
3881 4256 1.151668 CGCAGCAATATCACTAGCCC 58.848 55.000 0.00 0.00 0.00 5.19
3882 4257 1.528129 GCAGCAATATCACTAGCCCC 58.472 55.000 0.00 0.00 0.00 5.80
3883 4258 1.072965 GCAGCAATATCACTAGCCCCT 59.927 52.381 0.00 0.00 0.00 4.79
3884 4259 2.487986 GCAGCAATATCACTAGCCCCTT 60.488 50.000 0.00 0.00 0.00 3.95
3885 4260 3.825328 CAGCAATATCACTAGCCCCTTT 58.175 45.455 0.00 0.00 0.00 3.11
3886 4261 3.567164 CAGCAATATCACTAGCCCCTTTG 59.433 47.826 0.00 0.00 0.00 2.77
3887 4262 3.203040 AGCAATATCACTAGCCCCTTTGT 59.797 43.478 0.00 0.00 0.00 2.83
3888 4263 3.954258 GCAATATCACTAGCCCCTTTGTT 59.046 43.478 0.00 0.00 0.00 2.83
3889 4264 4.036852 GCAATATCACTAGCCCCTTTGTTC 59.963 45.833 0.00 0.00 0.00 3.18
3890 4265 5.440610 CAATATCACTAGCCCCTTTGTTCT 58.559 41.667 0.00 0.00 0.00 3.01
3891 4266 3.636153 ATCACTAGCCCCTTTGTTCTC 57.364 47.619 0.00 0.00 0.00 2.87
3892 4267 1.628846 TCACTAGCCCCTTTGTTCTCC 59.371 52.381 0.00 0.00 0.00 3.71
3893 4268 0.992695 ACTAGCCCCTTTGTTCTCCC 59.007 55.000 0.00 0.00 0.00 4.30
3894 4269 0.107654 CTAGCCCCTTTGTTCTCCCG 60.108 60.000 0.00 0.00 0.00 5.14
3895 4270 2.193087 TAGCCCCTTTGTTCTCCCGC 62.193 60.000 0.00 0.00 0.00 6.13
3896 4271 2.434331 CCCCTTTGTTCTCCCGCA 59.566 61.111 0.00 0.00 0.00 5.69
3897 4272 1.971695 CCCCTTTGTTCTCCCGCAC 60.972 63.158 0.00 0.00 0.00 5.34
3898 4273 2.325082 CCCTTTGTTCTCCCGCACG 61.325 63.158 0.00 0.00 0.00 5.34
3899 4274 2.556287 CTTTGTTCTCCCGCACGC 59.444 61.111 0.00 0.00 0.00 5.34
3900 4275 2.203084 TTTGTTCTCCCGCACGCA 60.203 55.556 0.00 0.00 0.00 5.24
3901 4276 2.443957 CTTTGTTCTCCCGCACGCAC 62.444 60.000 0.00 0.00 0.00 5.34
3927 4302 4.096003 GCAGGAAGCGTGCCCCTA 62.096 66.667 3.50 0.00 39.02 3.53
3928 4303 2.187946 CAGGAAGCGTGCCCCTAG 59.812 66.667 3.50 0.00 0.00 3.02
3929 4304 3.787001 AGGAAGCGTGCCCCTAGC 61.787 66.667 2.04 0.00 44.14 3.42
3956 4331 3.839432 GCCTCGGGCTCGTAGCTT 61.839 66.667 5.57 0.00 46.69 3.74
3957 4332 2.893398 CCTCGGGCTCGTAGCTTT 59.107 61.111 5.57 0.00 41.99 3.51
3958 4333 1.519455 CCTCGGGCTCGTAGCTTTG 60.519 63.158 5.57 0.00 41.99 2.77
3959 4334 1.215647 CTCGGGCTCGTAGCTTTGT 59.784 57.895 5.57 0.00 41.99 2.83
3960 4335 0.802607 CTCGGGCTCGTAGCTTTGTC 60.803 60.000 5.57 0.00 41.99 3.18
3961 4336 1.080093 CGGGCTCGTAGCTTTGTCA 60.080 57.895 0.00 0.00 41.99 3.58
3962 4337 0.460284 CGGGCTCGTAGCTTTGTCAT 60.460 55.000 0.00 0.00 41.99 3.06
3963 4338 1.291132 GGGCTCGTAGCTTTGTCATC 58.709 55.000 0.00 0.00 41.99 2.92
3964 4339 0.924090 GGCTCGTAGCTTTGTCATCG 59.076 55.000 0.00 0.00 41.99 3.84
3965 4340 1.630148 GCTCGTAGCTTTGTCATCGT 58.370 50.000 0.00 0.00 38.45 3.73
3966 4341 2.479049 GGCTCGTAGCTTTGTCATCGTA 60.479 50.000 0.00 0.00 41.99 3.43
3967 4342 2.784380 GCTCGTAGCTTTGTCATCGTAG 59.216 50.000 0.00 0.00 38.45 3.51
3968 4343 2.784380 CTCGTAGCTTTGTCATCGTAGC 59.216 50.000 0.00 0.00 0.00 3.58
3969 4344 2.422479 TCGTAGCTTTGTCATCGTAGCT 59.578 45.455 0.00 0.00 45.32 3.32
3970 4345 3.119602 TCGTAGCTTTGTCATCGTAGCTT 60.120 43.478 0.00 0.00 40.91 3.74
3971 4346 3.000674 CGTAGCTTTGTCATCGTAGCTTG 60.001 47.826 0.00 0.00 40.91 4.01
3972 4347 1.734465 AGCTTTGTCATCGTAGCTTGC 59.266 47.619 0.00 0.00 40.91 4.01
3973 4348 1.464608 GCTTTGTCATCGTAGCTTGCA 59.535 47.619 0.00 0.00 0.00 4.08
3974 4349 2.475187 GCTTTGTCATCGTAGCTTGCAG 60.475 50.000 0.00 0.00 0.00 4.41
3975 4350 1.078709 TTGTCATCGTAGCTTGCAGC 58.921 50.000 0.00 0.47 42.84 5.25
3976 4351 0.037419 TGTCATCGTAGCTTGCAGCA 60.037 50.000 10.16 0.00 45.56 4.41
3977 4352 0.371645 GTCATCGTAGCTTGCAGCAC 59.628 55.000 0.00 6.02 45.56 4.40
3978 4353 0.247460 TCATCGTAGCTTGCAGCACT 59.753 50.000 0.00 0.00 45.56 4.40
3979 4354 0.372679 CATCGTAGCTTGCAGCACTG 59.627 55.000 0.00 0.00 45.56 3.66
3990 4365 4.166888 AGCACTGCCATCCGCGAT 62.167 61.111 8.23 0.00 42.08 4.58
3991 4366 3.945434 GCACTGCCATCCGCGATG 61.945 66.667 8.23 9.67 42.08 3.84
3992 4367 3.945434 CACTGCCATCCGCGATGC 61.945 66.667 8.23 4.78 42.08 3.91
3995 4370 4.567488 TGCCATCCGCGATGCCAT 62.567 61.111 8.23 0.00 42.08 4.40
3996 4371 4.034258 GCCATCCGCGATGCCATG 62.034 66.667 8.23 1.19 38.59 3.66
3997 4372 3.359523 CCATCCGCGATGCCATGG 61.360 66.667 8.23 7.63 38.59 3.66
3998 4373 4.034258 CATCCGCGATGCCATGGC 62.034 66.667 30.54 30.54 42.35 4.40
3999 4374 4.260609 ATCCGCGATGCCATGGCT 62.261 61.111 35.53 21.86 42.51 4.75
4000 4375 3.779850 ATCCGCGATGCCATGGCTT 62.780 57.895 35.53 30.00 42.51 4.35
4001 4376 4.260355 CCGCGATGCCATGGCTTG 62.260 66.667 35.53 24.94 42.51 4.01
4002 4377 4.918129 CGCGATGCCATGGCTTGC 62.918 66.667 35.53 30.98 42.51 4.01
4003 4378 4.580551 GCGATGCCATGGCTTGCC 62.581 66.667 35.53 20.17 42.51 4.52
4004 4379 3.142162 CGATGCCATGGCTTGCCA 61.142 61.111 35.53 17.28 42.51 4.92
4005 4380 2.497770 GATGCCATGGCTTGCCAC 59.502 61.111 35.53 14.90 42.51 5.01
4006 4381 2.284039 ATGCCATGGCTTGCCACA 60.284 55.556 35.53 15.70 42.51 4.17
4007 4382 1.682451 GATGCCATGGCTTGCCACAT 61.682 55.000 35.53 19.88 42.51 3.21
4008 4383 0.397394 ATGCCATGGCTTGCCACATA 60.397 50.000 35.53 14.13 42.51 2.29
4009 4384 1.321805 TGCCATGGCTTGCCACATAC 61.322 55.000 35.53 7.55 42.51 2.39
4010 4385 1.729276 CCATGGCTTGCCACATACG 59.271 57.895 17.22 3.54 0.00 3.06
4011 4386 1.064621 CATGGCTTGCCACATACGC 59.935 57.895 17.22 0.00 0.00 4.42
4012 4387 1.077501 ATGGCTTGCCACATACGCT 60.078 52.632 17.22 0.00 0.00 5.07
4013 4388 1.097547 ATGGCTTGCCACATACGCTC 61.098 55.000 17.22 0.00 0.00 5.03
4014 4389 2.472909 GGCTTGCCACATACGCTCC 61.473 63.158 6.79 0.00 0.00 4.70
4015 4390 2.472909 GCTTGCCACATACGCTCCC 61.473 63.158 0.00 0.00 0.00 4.30
4016 4391 1.819632 CTTGCCACATACGCTCCCC 60.820 63.158 0.00 0.00 0.00 4.81
4017 4392 3.338275 TTGCCACATACGCTCCCCC 62.338 63.158 0.00 0.00 0.00 5.40
4032 4407 3.717294 CCCCCTTGTGGACTCCCG 61.717 72.222 0.00 0.00 35.39 5.14
4033 4408 4.410400 CCCCTTGTGGACTCCCGC 62.410 72.222 0.00 0.00 43.22 6.13
4034 4409 3.322466 CCCTTGTGGACTCCCGCT 61.322 66.667 0.00 0.00 43.32 5.52
4035 4410 2.266055 CCTTGTGGACTCCCGCTC 59.734 66.667 0.00 0.00 43.32 5.03
4036 4411 2.583441 CCTTGTGGACTCCCGCTCA 61.583 63.158 0.00 0.00 43.32 4.26
4037 4412 1.374758 CTTGTGGACTCCCGCTCAC 60.375 63.158 0.00 0.00 43.32 3.51
4038 4413 2.099652 CTTGTGGACTCCCGCTCACA 62.100 60.000 0.00 0.00 43.32 3.58
4039 4414 2.099652 TTGTGGACTCCCGCTCACAG 62.100 60.000 0.00 0.00 43.32 3.66
4040 4415 2.997315 TGGACTCCCGCTCACAGG 60.997 66.667 0.00 0.00 34.29 4.00
4041 4416 2.680352 GGACTCCCGCTCACAGGA 60.680 66.667 0.00 0.00 0.00 3.86
4044 4419 2.681778 CTCCCGCTCACAGGAGGT 60.682 66.667 0.00 0.00 45.08 3.85
4045 4420 2.680352 TCCCGCTCACAGGAGGTC 60.680 66.667 0.00 0.00 41.67 3.85
4046 4421 4.135153 CCCGCTCACAGGAGGTCG 62.135 72.222 0.00 0.00 41.67 4.79
4047 4422 4.803426 CCGCTCACAGGAGGTCGC 62.803 72.222 0.00 0.00 41.67 5.19
4048 4423 4.056125 CGCTCACAGGAGGTCGCA 62.056 66.667 0.00 0.00 41.67 5.10
4049 4424 2.125753 GCTCACAGGAGGTCGCAG 60.126 66.667 0.00 0.00 41.67 5.18
4050 4425 2.125753 CTCACAGGAGGTCGCAGC 60.126 66.667 0.00 0.00 37.51 5.25
4051 4426 3.655810 CTCACAGGAGGTCGCAGCC 62.656 68.421 0.00 0.00 37.51 4.85
4052 4427 3.699894 CACAGGAGGTCGCAGCCT 61.700 66.667 0.00 0.00 42.53 4.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.166279 GTCAAGGATGATCTCGCCATTATTA 58.834 40.000 0.00 0.00 38.01 0.98
32 33 6.777782 ACTCTCTTCCTCAACTTCATGATTT 58.222 36.000 0.00 0.00 0.00 2.17
33 34 6.371595 ACTCTCTTCCTCAACTTCATGATT 57.628 37.500 0.00 0.00 0.00 2.57
123 124 0.038251 CCTCGCTGCTCACAACTACA 60.038 55.000 0.00 0.00 0.00 2.74
408 429 8.467598 CGGCTTGGCTCTTATATATACTTCTTA 58.532 37.037 0.00 0.00 0.00 2.10
435 456 7.431249 CGTTTGTAATAAGGCTAGGTCAGATA 58.569 38.462 0.00 0.00 0.00 1.98
460 481 8.488308 TTGTATTAGGATTAAGACTCCTACCC 57.512 38.462 3.26 0.00 43.46 3.69
521 543 5.906113 TGGCAAGTCACTAAGAACAAAAA 57.094 34.783 0.00 0.00 0.00 1.94
522 544 5.592282 TGATGGCAAGTCACTAAGAACAAAA 59.408 36.000 0.00 0.00 0.00 2.44
523 545 5.008613 GTGATGGCAAGTCACTAAGAACAAA 59.991 40.000 12.78 0.00 42.04 2.83
524 546 4.515191 GTGATGGCAAGTCACTAAGAACAA 59.485 41.667 12.78 0.00 42.04 2.83
525 547 4.065088 GTGATGGCAAGTCACTAAGAACA 58.935 43.478 12.78 0.00 42.04 3.18
526 548 3.437049 GGTGATGGCAAGTCACTAAGAAC 59.563 47.826 17.94 0.55 44.15 3.01
527 549 3.072330 TGGTGATGGCAAGTCACTAAGAA 59.928 43.478 17.94 0.97 44.15 2.52
528 550 2.637382 TGGTGATGGCAAGTCACTAAGA 59.363 45.455 17.94 1.51 44.15 2.10
529 551 2.744202 GTGGTGATGGCAAGTCACTAAG 59.256 50.000 17.94 0.00 44.15 2.18
530 552 2.105649 TGTGGTGATGGCAAGTCACTAA 59.894 45.455 17.94 7.01 44.15 2.24
531 553 1.696884 TGTGGTGATGGCAAGTCACTA 59.303 47.619 17.94 11.29 44.15 2.74
532 554 0.473755 TGTGGTGATGGCAAGTCACT 59.526 50.000 17.94 0.00 44.15 3.41
533 555 1.317613 TTGTGGTGATGGCAAGTCAC 58.682 50.000 11.85 11.85 44.01 3.67
534 556 2.291209 ATTGTGGTGATGGCAAGTCA 57.709 45.000 0.00 0.00 0.00 3.41
535 557 4.398988 TCATTATTGTGGTGATGGCAAGTC 59.601 41.667 0.00 0.00 0.00 3.01
536 558 4.343231 TCATTATTGTGGTGATGGCAAGT 58.657 39.130 0.00 0.00 0.00 3.16
537 559 4.987408 TCATTATTGTGGTGATGGCAAG 57.013 40.909 0.00 0.00 0.00 4.01
538 560 5.265350 CATCATTATTGTGGTGATGGCAA 57.735 39.130 6.67 0.00 43.32 4.52
539 561 4.922471 CATCATTATTGTGGTGATGGCA 57.078 40.909 6.67 0.00 43.32 4.92
543 565 8.241497 AGCATAAACATCATTATTGTGGTGAT 57.759 30.769 0.00 0.00 34.33 3.06
544 566 7.643569 AGCATAAACATCATTATTGTGGTGA 57.356 32.000 0.00 0.00 34.33 4.02
593 616 1.597937 GCGATGACGAATTTGGATGCC 60.598 52.381 0.00 0.00 42.66 4.40
612 635 4.268884 CAGTCTAGCGAAAAACATAGAGGC 59.731 45.833 0.00 0.00 0.00 4.70
650 673 3.881937 AGTGACCACGTTTATAGGACC 57.118 47.619 0.00 0.00 36.20 4.46
813 837 1.295423 GGCGAGTTAAGTGCTGGGA 59.705 57.895 0.00 0.00 0.00 4.37
816 840 1.080093 TCGGGCGAGTTAAGTGCTG 60.080 57.895 0.00 0.00 0.00 4.41
924 957 2.512056 TCCTCGATCTTCTTCCTCCTCT 59.488 50.000 0.00 0.00 0.00 3.69
998 1031 2.187946 CCGCCACCTCAGACATCC 59.812 66.667 0.00 0.00 0.00 3.51
1185 1218 3.757493 AGCAAGAGAAATGAGAAAGCAGG 59.243 43.478 0.00 0.00 0.00 4.85
1287 1329 3.827008 TCAAATAGAGGGCAGCAGTAG 57.173 47.619 0.00 0.00 0.00 2.57
1291 1333 3.650281 TTCATCAAATAGAGGGCAGCA 57.350 42.857 0.00 0.00 0.00 4.41
1292 1334 4.139786 TGATTCATCAAATAGAGGGCAGC 58.860 43.478 0.00 0.00 33.08 5.25
1298 1340 9.177608 TGGTTAACCTTGATTCATCAAATAGAG 57.822 33.333 24.78 0.00 45.26 2.43
1351 1393 9.151471 GTACTGCTACTGAATTAGATTTGTGAA 57.849 33.333 0.00 0.00 0.00 3.18
1352 1394 7.764443 GGTACTGCTACTGAATTAGATTTGTGA 59.236 37.037 0.00 0.00 0.00 3.58
1392 1438 5.746245 TGCCGTTTTTCTGAACTTAAACATG 59.254 36.000 13.54 0.00 32.28 3.21
1407 1453 5.826601 AATTTTTGTGGATTGCCGTTTTT 57.173 30.435 0.00 0.00 36.79 1.94
1485 1531 6.368791 TGATTGTTTACAAGTGCTGCTACTAG 59.631 38.462 0.00 0.00 39.47 2.57
1535 1686 9.307121 CATACACAAATTTGTCTTTTTGTACCA 57.693 29.630 20.85 1.49 42.52 3.25
1704 1856 2.228822 GCCCGATTCAAAACATGTCACT 59.771 45.455 0.00 0.00 0.00 3.41
1705 1857 2.030363 TGCCCGATTCAAAACATGTCAC 60.030 45.455 0.00 0.00 0.00 3.67
1706 1858 2.228582 CTGCCCGATTCAAAACATGTCA 59.771 45.455 0.00 0.00 0.00 3.58
1707 1859 2.487762 TCTGCCCGATTCAAAACATGTC 59.512 45.455 0.00 0.00 0.00 3.06
1863 2026 9.764363 TCACATAGCAATAAAGGTTAGATACTG 57.236 33.333 0.00 0.00 0.00 2.74
1874 2037 6.812656 TGTTTGCCAATCACATAGCAATAAAG 59.187 34.615 0.00 0.00 44.10 1.85
1876 2039 6.278172 TGTTTGCCAATCACATAGCAATAA 57.722 33.333 0.00 0.00 44.10 1.40
1881 2044 4.305769 TGTTTGTTTGCCAATCACATAGC 58.694 39.130 0.00 0.00 31.81 2.97
2054 2220 1.814394 AGCTGCGAGAAAATGATGCAA 59.186 42.857 0.00 0.00 34.78 4.08
2207 2373 8.454106 ACATAAAGAGGAGTTTGATCGAAAATG 58.546 33.333 0.00 0.00 0.00 2.32
2290 2461 9.255304 GTTGTAGCCATTTTGTAGAAATGAAAA 57.745 29.630 11.84 0.00 39.36 2.29
2354 2526 2.965831 ACAACTGAGAACTGGCACTAGA 59.034 45.455 0.00 0.00 0.00 2.43
2483 2658 2.227149 TGCAGTCTGATCAATGCACAAC 59.773 45.455 20.20 2.31 43.34 3.32
2542 2717 3.932710 TCCATGTTGTCATTACTCGCTTC 59.067 43.478 0.00 0.00 31.15 3.86
2543 2719 3.937814 TCCATGTTGTCATTACTCGCTT 58.062 40.909 0.00 0.00 31.15 4.68
2779 2955 5.567037 TGCAGCCACAGAAAGGTATATAT 57.433 39.130 0.00 0.00 0.00 0.86
3053 3240 2.092158 CCCCTTCCTTCCATCCTTCTTC 60.092 54.545 0.00 0.00 0.00 2.87
3117 3304 7.693951 AGCGATAAAAATGAACTGAGAAAATCG 59.306 33.333 0.00 0.00 35.64 3.34
3176 3363 3.006112 ACTCTAGGTTCTCGATGCTCA 57.994 47.619 0.00 0.00 0.00 4.26
3197 3384 9.899661 ATACTGGCATACTTAGTTGAAACATTA 57.100 29.630 0.00 0.00 0.00 1.90
3217 3404 4.872691 GGACTCTTCACATTGACATACTGG 59.127 45.833 0.00 0.00 0.00 4.00
3218 3405 4.872691 GGGACTCTTCACATTGACATACTG 59.127 45.833 0.00 0.00 0.00 2.74
3290 3477 6.834168 AGGAATAACAAACATGGTACCTTG 57.166 37.500 22.78 22.78 0.00 3.61
3422 3797 5.918011 GTGCAATTTCGTTTAGGATTTCACA 59.082 36.000 0.00 0.00 0.00 3.58
3530 3905 1.000396 GAGCAGTTTCAGGGCCCAT 60.000 57.895 27.56 6.18 0.00 4.00
3531 3906 2.436109 GAGCAGTTTCAGGGCCCA 59.564 61.111 27.56 0.00 0.00 5.36
3532 3907 2.361737 GGAGCAGTTTCAGGGCCC 60.362 66.667 16.46 16.46 0.00 5.80
3533 3908 2.747855 CGGAGCAGTTTCAGGGCC 60.748 66.667 0.00 0.00 0.00 5.80
3534 3909 2.032681 ACGGAGCAGTTTCAGGGC 59.967 61.111 0.00 0.00 0.00 5.19
3535 3910 2.328099 GCACGGAGCAGTTTCAGGG 61.328 63.158 0.00 0.00 44.79 4.45
3536 3911 3.257933 GCACGGAGCAGTTTCAGG 58.742 61.111 0.00 0.00 44.79 3.86
3545 3920 1.258982 CATAAAGATCGTGCACGGAGC 59.741 52.381 36.41 25.10 45.96 4.70
3546 3921 1.860950 CCATAAAGATCGTGCACGGAG 59.139 52.381 36.41 17.41 40.29 4.63
3547 3922 1.934589 CCATAAAGATCGTGCACGGA 58.065 50.000 36.41 23.85 40.29 4.69
3548 3923 0.304705 GCCATAAAGATCGTGCACGG 59.695 55.000 36.41 19.13 40.29 4.94
3549 3924 0.304705 GGCCATAAAGATCGTGCACG 59.695 55.000 32.76 32.76 41.45 5.34
3550 3925 0.304705 CGGCCATAAAGATCGTGCAC 59.695 55.000 6.82 6.82 0.00 4.57
3551 3926 0.176910 TCGGCCATAAAGATCGTGCA 59.823 50.000 2.24 0.00 0.00 4.57
3552 3927 0.582005 GTCGGCCATAAAGATCGTGC 59.418 55.000 2.24 0.00 0.00 5.34
3553 3928 1.934589 TGTCGGCCATAAAGATCGTG 58.065 50.000 2.24 0.00 0.00 4.35
3554 3929 2.910688 ATGTCGGCCATAAAGATCGT 57.089 45.000 2.24 0.00 29.82 3.73
3555 3930 3.062639 GCATATGTCGGCCATAAAGATCG 59.937 47.826 2.24 0.00 39.43 3.69
3556 3931 4.002982 TGCATATGTCGGCCATAAAGATC 58.997 43.478 2.24 0.00 39.43 2.75
3557 3932 3.753272 GTGCATATGTCGGCCATAAAGAT 59.247 43.478 2.24 0.00 39.43 2.40
3558 3933 3.138304 GTGCATATGTCGGCCATAAAGA 58.862 45.455 2.24 0.00 39.43 2.52
3559 3934 2.226437 GGTGCATATGTCGGCCATAAAG 59.774 50.000 2.24 0.00 39.43 1.85
3560 3935 2.226330 GGTGCATATGTCGGCCATAAA 58.774 47.619 2.24 0.00 39.43 1.40
3561 3936 1.141858 TGGTGCATATGTCGGCCATAA 59.858 47.619 2.24 0.00 39.43 1.90
3562 3937 0.761802 TGGTGCATATGTCGGCCATA 59.238 50.000 2.24 0.00 40.27 2.74
3563 3938 0.819259 GTGGTGCATATGTCGGCCAT 60.819 55.000 2.24 0.00 37.58 4.40
3564 3939 1.451207 GTGGTGCATATGTCGGCCA 60.451 57.895 2.24 5.25 0.00 5.36
3565 3940 2.534019 CGTGGTGCATATGTCGGCC 61.534 63.158 4.29 0.00 0.00 6.13
3566 3941 1.813753 ACGTGGTGCATATGTCGGC 60.814 57.895 4.29 0.00 0.00 5.54
3567 3942 0.739462 ACACGTGGTGCATATGTCGG 60.739 55.000 21.57 0.00 36.98 4.79
3568 3943 1.915952 TACACGTGGTGCATATGTCG 58.084 50.000 21.57 5.01 36.98 4.35
3569 3944 3.247648 GGATTACACGTGGTGCATATGTC 59.752 47.826 21.57 4.40 36.98 3.06
3570 3945 3.202906 GGATTACACGTGGTGCATATGT 58.797 45.455 21.57 0.00 36.98 2.29
3571 3946 2.220824 CGGATTACACGTGGTGCATATG 59.779 50.000 21.57 0.00 36.98 1.78
3572 3947 2.479837 CGGATTACACGTGGTGCATAT 58.520 47.619 21.57 3.41 36.98 1.78
3573 3948 1.471851 CCGGATTACACGTGGTGCATA 60.472 52.381 21.57 0.00 36.98 3.14
3574 3949 0.742990 CCGGATTACACGTGGTGCAT 60.743 55.000 21.57 5.62 36.98 3.96
3575 3950 1.374885 CCGGATTACACGTGGTGCA 60.375 57.895 21.57 0.19 36.98 4.57
3576 3951 2.746803 GCCGGATTACACGTGGTGC 61.747 63.158 21.57 9.71 36.98 5.01
3577 3952 2.449525 CGCCGGATTACACGTGGTG 61.450 63.158 21.57 2.44 39.75 4.17
3578 3953 2.125832 CGCCGGATTACACGTGGT 60.126 61.111 21.57 8.16 0.00 4.16
3579 3954 2.888534 CCGCCGGATTACACGTGG 60.889 66.667 21.57 0.22 0.00 4.94
3580 3955 3.560278 GCCGCCGGATTACACGTG 61.560 66.667 15.48 15.48 0.00 4.49
3581 3956 4.825252 GGCCGCCGGATTACACGT 62.825 66.667 7.68 0.00 0.00 4.49
3593 3968 4.752879 TCAAGTAGCACCGGCCGC 62.753 66.667 22.85 6.25 42.56 6.53
3594 3969 1.429148 GATTCAAGTAGCACCGGCCG 61.429 60.000 21.04 21.04 42.56 6.13
3595 3970 0.392461 TGATTCAAGTAGCACCGGCC 60.392 55.000 0.00 0.00 42.56 6.13
3596 3971 1.668419 ATGATTCAAGTAGCACCGGC 58.332 50.000 0.00 0.00 41.61 6.13
3597 3972 2.794910 CGTATGATTCAAGTAGCACCGG 59.205 50.000 0.00 0.00 0.00 5.28
3598 3973 2.218759 GCGTATGATTCAAGTAGCACCG 59.781 50.000 0.00 0.00 0.00 4.94
3599 3974 3.194861 TGCGTATGATTCAAGTAGCACC 58.805 45.455 0.00 0.00 0.00 5.01
3600 3975 4.271049 ACATGCGTATGATTCAAGTAGCAC 59.729 41.667 20.86 0.00 37.73 4.40
3601 3976 4.441792 ACATGCGTATGATTCAAGTAGCA 58.558 39.130 20.86 10.36 37.73 3.49
3602 3977 5.387444 CGTACATGCGTATGATTCAAGTAGC 60.387 44.000 20.86 0.00 36.84 3.58
3603 3978 5.117135 CCGTACATGCGTATGATTCAAGTAG 59.883 44.000 20.86 1.30 36.84 2.57
3604 3979 4.979815 CCGTACATGCGTATGATTCAAGTA 59.020 41.667 20.86 0.00 36.84 2.24
3605 3980 3.802139 CCGTACATGCGTATGATTCAAGT 59.198 43.478 20.86 0.00 36.84 3.16
3606 3981 3.362986 GCCGTACATGCGTATGATTCAAG 60.363 47.826 20.86 4.82 36.84 3.02
3607 3982 2.542178 GCCGTACATGCGTATGATTCAA 59.458 45.455 20.86 0.00 36.84 2.69
3608 3983 2.131972 GCCGTACATGCGTATGATTCA 58.868 47.619 20.86 0.00 36.84 2.57
3609 3984 1.459592 GGCCGTACATGCGTATGATTC 59.540 52.381 20.86 8.53 36.84 2.52
3610 3985 1.508632 GGCCGTACATGCGTATGATT 58.491 50.000 20.86 0.90 36.84 2.57
3611 3986 0.666274 CGGCCGTACATGCGTATGAT 60.666 55.000 20.86 7.11 36.84 2.45
3612 3987 1.299544 CGGCCGTACATGCGTATGA 60.300 57.895 20.86 1.06 36.84 2.15
3613 3988 2.307309 CCGGCCGTACATGCGTATG 61.307 63.158 26.12 12.28 40.24 2.39
3614 3989 1.812686 ATCCGGCCGTACATGCGTAT 61.813 55.000 26.12 0.05 0.00 3.06
3615 3990 2.018727 AATCCGGCCGTACATGCGTA 62.019 55.000 26.12 0.00 0.00 4.42
3616 3991 3.379865 AATCCGGCCGTACATGCGT 62.380 57.895 26.12 0.00 0.00 5.24
3617 3992 2.587753 AATCCGGCCGTACATGCG 60.588 61.111 26.12 6.69 0.00 4.73
3618 3993 1.522806 TGAATCCGGCCGTACATGC 60.523 57.895 26.12 12.07 0.00 4.06
3619 3994 0.179084 AGTGAATCCGGCCGTACATG 60.179 55.000 26.12 8.39 0.00 3.21
3620 3995 1.405872 TAGTGAATCCGGCCGTACAT 58.594 50.000 26.12 10.16 0.00 2.29
3621 3996 1.184431 TTAGTGAATCCGGCCGTACA 58.816 50.000 26.12 14.95 0.00 2.90
3622 3997 2.132762 CATTAGTGAATCCGGCCGTAC 58.867 52.381 26.12 14.25 0.00 3.67
3623 3998 1.069513 CCATTAGTGAATCCGGCCGTA 59.930 52.381 26.12 9.32 0.00 4.02
3624 3999 0.179056 CCATTAGTGAATCCGGCCGT 60.179 55.000 26.12 5.12 0.00 5.68
3625 4000 0.179056 ACCATTAGTGAATCCGGCCG 60.179 55.000 21.04 21.04 0.00 6.13
3626 4001 3.800826 ACCATTAGTGAATCCGGCC 57.199 52.632 0.00 0.00 0.00 6.13
3636 4011 2.268298 GACGATTCACGCACCATTAGT 58.732 47.619 0.00 0.00 46.94 2.24
3637 4012 1.593006 GGACGATTCACGCACCATTAG 59.407 52.381 0.00 0.00 46.94 1.73
3638 4013 1.066787 TGGACGATTCACGCACCATTA 60.067 47.619 0.00 0.00 46.94 1.90
3639 4014 0.321210 TGGACGATTCACGCACCATT 60.321 50.000 0.00 0.00 46.94 3.16
3640 4015 0.740868 CTGGACGATTCACGCACCAT 60.741 55.000 0.00 0.00 44.92 3.55
3641 4016 1.374125 CTGGACGATTCACGCACCA 60.374 57.895 0.00 0.00 46.94 4.17
3642 4017 0.949105 AACTGGACGATTCACGCACC 60.949 55.000 0.00 0.00 46.94 5.01
3643 4018 0.865769 AAACTGGACGATTCACGCAC 59.134 50.000 0.00 0.00 46.94 5.34
3644 4019 1.588674 AAAACTGGACGATTCACGCA 58.411 45.000 0.00 0.00 46.94 5.24
3645 4020 2.286772 ACAAAAACTGGACGATTCACGC 60.287 45.455 0.00 0.00 46.94 5.34
3647 4022 3.001939 ACGACAAAAACTGGACGATTCAC 59.998 43.478 0.00 0.00 34.57 3.18
3648 4023 3.001838 CACGACAAAAACTGGACGATTCA 59.998 43.478 0.00 0.00 34.57 2.57
3649 4024 3.001939 ACACGACAAAAACTGGACGATTC 59.998 43.478 0.00 0.00 34.57 2.52
3650 4025 2.940410 ACACGACAAAAACTGGACGATT 59.060 40.909 0.00 0.00 34.57 3.34
3651 4026 2.286833 CACACGACAAAAACTGGACGAT 59.713 45.455 0.00 0.00 34.57 3.73
3652 4027 1.661617 CACACGACAAAAACTGGACGA 59.338 47.619 0.00 0.00 34.57 4.20
3653 4028 1.854434 GCACACGACAAAAACTGGACG 60.854 52.381 0.00 0.00 35.87 4.79
3654 4029 1.131504 TGCACACGACAAAAACTGGAC 59.868 47.619 0.00 0.00 0.00 4.02
3655 4030 1.454201 TGCACACGACAAAAACTGGA 58.546 45.000 0.00 0.00 0.00 3.86
3656 4031 2.490328 ATGCACACGACAAAAACTGG 57.510 45.000 0.00 0.00 0.00 4.00
3657 4032 2.973224 GCTATGCACACGACAAAAACTG 59.027 45.455 0.00 0.00 0.00 3.16
3658 4033 2.616376 TGCTATGCACACGACAAAAACT 59.384 40.909 0.00 0.00 31.71 2.66
3659 4034 2.993545 TGCTATGCACACGACAAAAAC 58.006 42.857 0.00 0.00 31.71 2.43
3671 4046 3.083349 AGGGCCTCGTGCTATGCA 61.083 61.111 0.00 0.00 40.92 3.96
3672 4047 2.590007 CAGGGCCTCGTGCTATGC 60.590 66.667 0.95 0.00 40.92 3.14
3678 4053 3.077556 ACCTAGCAGGGCCTCGTG 61.078 66.667 0.95 0.00 40.58 4.35
3679 4054 3.077556 CACCTAGCAGGGCCTCGT 61.078 66.667 0.95 0.00 40.58 4.18
3680 4055 4.537433 GCACCTAGCAGGGCCTCG 62.537 72.222 0.95 0.00 44.79 4.63
3739 4114 0.178068 ACGTGCACATGGGATCCTAC 59.822 55.000 18.64 0.00 0.00 3.18
3766 4141 6.656902 ACCAAATCAATGCTAGAGAAGATCA 58.343 36.000 0.00 0.00 0.00 2.92
3775 4150 6.373774 AGAGAAGACAACCAAATCAATGCTAG 59.626 38.462 0.00 0.00 0.00 3.42
3806 4181 3.319198 TCCCCCGTGTTGAGAGGC 61.319 66.667 0.00 0.00 0.00 4.70
3807 4182 2.663196 GTCCCCCGTGTTGAGAGG 59.337 66.667 0.00 0.00 0.00 3.69
3808 4183 2.663196 GGTCCCCCGTGTTGAGAG 59.337 66.667 0.00 0.00 0.00 3.20
3809 4184 2.926242 GGGTCCCCCGTGTTGAGA 60.926 66.667 0.00 0.00 32.13 3.27
3818 4193 3.979497 CAAGGGTGTGGGTCCCCC 61.979 72.222 5.13 0.00 45.64 5.40
3819 4194 4.678743 GCAAGGGTGTGGGTCCCC 62.679 72.222 5.13 0.00 45.64 4.81
3820 4195 4.678743 GGCAAGGGTGTGGGTCCC 62.679 72.222 0.00 0.00 44.90 4.46
3821 4196 3.569200 GAGGCAAGGGTGTGGGTCC 62.569 68.421 0.00 0.00 0.00 4.46
3822 4197 2.034221 GAGGCAAGGGTGTGGGTC 59.966 66.667 0.00 0.00 0.00 4.46
3823 4198 3.580319 GGAGGCAAGGGTGTGGGT 61.580 66.667 0.00 0.00 0.00 4.51
3824 4199 3.260100 AGGAGGCAAGGGTGTGGG 61.260 66.667 0.00 0.00 0.00 4.61
3825 4200 2.034687 CAGGAGGCAAGGGTGTGG 59.965 66.667 0.00 0.00 0.00 4.17
3826 4201 2.674380 GCAGGAGGCAAGGGTGTG 60.674 66.667 0.00 0.00 43.97 3.82
3840 4215 3.793144 GAACGAAGCTGCGGGCAG 61.793 66.667 20.52 16.09 46.15 4.85
3843 4218 2.815647 GAGGAACGAAGCTGCGGG 60.816 66.667 20.52 0.00 35.12 6.13
3844 4219 1.807573 GAGAGGAACGAAGCTGCGG 60.808 63.158 20.52 0.00 35.12 5.69
3845 4220 2.155194 CGAGAGGAACGAAGCTGCG 61.155 63.158 14.05 14.05 37.29 5.18
3846 4221 2.448705 GCGAGAGGAACGAAGCTGC 61.449 63.158 0.00 0.00 0.00 5.25
3847 4222 1.075425 CTGCGAGAGGAACGAAGCTG 61.075 60.000 0.00 0.00 29.59 4.24
3848 4223 1.214062 CTGCGAGAGGAACGAAGCT 59.786 57.895 0.00 0.00 29.59 3.74
3849 4224 3.773974 CTGCGAGAGGAACGAAGC 58.226 61.111 0.00 0.00 29.59 3.86
3850 4225 0.667487 TTGCTGCGAGAGGAACGAAG 60.667 55.000 0.00 0.00 39.18 3.79
3851 4226 0.037326 ATTGCTGCGAGAGGAACGAA 60.037 50.000 0.00 0.00 34.37 3.85
3852 4227 0.815095 TATTGCTGCGAGAGGAACGA 59.185 50.000 0.00 0.00 34.37 3.85
3853 4228 1.789464 GATATTGCTGCGAGAGGAACG 59.211 52.381 0.00 0.00 34.37 3.95
3854 4229 2.541762 GTGATATTGCTGCGAGAGGAAC 59.458 50.000 0.00 0.00 34.37 3.62
3855 4230 2.432146 AGTGATATTGCTGCGAGAGGAA 59.568 45.455 0.00 0.00 36.30 3.36
3856 4231 2.034878 AGTGATATTGCTGCGAGAGGA 58.965 47.619 0.00 0.00 0.00 3.71
3857 4232 2.522836 AGTGATATTGCTGCGAGAGG 57.477 50.000 0.00 0.00 0.00 3.69
3858 4233 2.985809 GCTAGTGATATTGCTGCGAGAG 59.014 50.000 0.00 0.00 0.00 3.20
3859 4234 2.288457 GGCTAGTGATATTGCTGCGAGA 60.288 50.000 0.00 0.00 0.00 4.04
3860 4235 2.064762 GGCTAGTGATATTGCTGCGAG 58.935 52.381 0.00 0.00 0.00 5.03
3861 4236 1.270305 GGGCTAGTGATATTGCTGCGA 60.270 52.381 0.00 0.00 0.00 5.10
3862 4237 1.151668 GGGCTAGTGATATTGCTGCG 58.848 55.000 0.00 0.00 0.00 5.18
3863 4238 1.072965 AGGGGCTAGTGATATTGCTGC 59.927 52.381 0.00 0.00 0.00 5.25
3864 4239 3.498774 AAGGGGCTAGTGATATTGCTG 57.501 47.619 0.00 0.00 0.00 4.41
3865 4240 3.203040 ACAAAGGGGCTAGTGATATTGCT 59.797 43.478 0.00 0.00 0.00 3.91
3866 4241 3.555966 ACAAAGGGGCTAGTGATATTGC 58.444 45.455 0.00 0.00 0.00 3.56
3867 4242 5.440610 AGAACAAAGGGGCTAGTGATATTG 58.559 41.667 0.00 0.00 0.00 1.90
3868 4243 5.398012 GGAGAACAAAGGGGCTAGTGATATT 60.398 44.000 0.00 0.00 0.00 1.28
3869 4244 4.103311 GGAGAACAAAGGGGCTAGTGATAT 59.897 45.833 0.00 0.00 0.00 1.63
3870 4245 3.454812 GGAGAACAAAGGGGCTAGTGATA 59.545 47.826 0.00 0.00 0.00 2.15
3871 4246 2.239907 GGAGAACAAAGGGGCTAGTGAT 59.760 50.000 0.00 0.00 0.00 3.06
3872 4247 1.628846 GGAGAACAAAGGGGCTAGTGA 59.371 52.381 0.00 0.00 0.00 3.41
3873 4248 1.340114 GGGAGAACAAAGGGGCTAGTG 60.340 57.143 0.00 0.00 0.00 2.74
3874 4249 0.992695 GGGAGAACAAAGGGGCTAGT 59.007 55.000 0.00 0.00 0.00 2.57
3875 4250 0.107654 CGGGAGAACAAAGGGGCTAG 60.108 60.000 0.00 0.00 0.00 3.42
3876 4251 1.988015 CGGGAGAACAAAGGGGCTA 59.012 57.895 0.00 0.00 0.00 3.93
3877 4252 2.757077 CGGGAGAACAAAGGGGCT 59.243 61.111 0.00 0.00 0.00 5.19
3878 4253 3.062466 GCGGGAGAACAAAGGGGC 61.062 66.667 0.00 0.00 0.00 5.80
3879 4254 1.971695 GTGCGGGAGAACAAAGGGG 60.972 63.158 0.00 0.00 38.67 4.79
3880 4255 2.325082 CGTGCGGGAGAACAAAGGG 61.325 63.158 0.00 0.00 38.78 3.95
3881 4256 2.966309 GCGTGCGGGAGAACAAAGG 61.966 63.158 0.00 0.00 38.78 3.11
3882 4257 2.250939 TGCGTGCGGGAGAACAAAG 61.251 57.895 0.00 0.00 38.78 2.77
3883 4258 2.203084 TGCGTGCGGGAGAACAAA 60.203 55.556 0.00 0.00 38.78 2.83
3884 4259 2.970324 GTGCGTGCGGGAGAACAA 60.970 61.111 0.00 0.00 38.78 2.83
3940 4315 1.519455 CAAAGCTACGAGCCCGAGG 60.519 63.158 0.00 0.00 43.77 4.63
3941 4316 0.802607 GACAAAGCTACGAGCCCGAG 60.803 60.000 0.00 0.00 43.77 4.63
3942 4317 1.214589 GACAAAGCTACGAGCCCGA 59.785 57.895 0.00 0.00 43.77 5.14
3943 4318 0.460284 ATGACAAAGCTACGAGCCCG 60.460 55.000 0.00 0.00 43.77 6.13
3944 4319 1.291132 GATGACAAAGCTACGAGCCC 58.709 55.000 0.00 0.00 43.77 5.19
3945 4320 0.924090 CGATGACAAAGCTACGAGCC 59.076 55.000 0.00 0.00 43.77 4.70
3946 4321 1.630148 ACGATGACAAAGCTACGAGC 58.370 50.000 0.00 0.00 42.84 5.03
3947 4322 2.784380 GCTACGATGACAAAGCTACGAG 59.216 50.000 0.00 0.00 32.18 4.18
3948 4323 2.422479 AGCTACGATGACAAAGCTACGA 59.578 45.455 0.00 0.00 43.29 3.43
3949 4324 2.798680 AGCTACGATGACAAAGCTACG 58.201 47.619 0.00 0.00 43.29 3.51
3950 4325 3.242123 GCAAGCTACGATGACAAAGCTAC 60.242 47.826 0.00 0.14 44.30 3.58
3951 4326 2.930040 GCAAGCTACGATGACAAAGCTA 59.070 45.455 0.00 0.00 44.30 3.32
3952 4327 1.734465 GCAAGCTACGATGACAAAGCT 59.266 47.619 0.00 0.00 46.96 3.74
3953 4328 1.464608 TGCAAGCTACGATGACAAAGC 59.535 47.619 0.00 0.00 35.16 3.51
3954 4329 3.380486 CTGCAAGCTACGATGACAAAG 57.620 47.619 0.00 0.00 0.00 2.77
3973 4348 4.166888 ATCGCGGATGGCAGTGCT 62.167 61.111 16.11 0.00 43.84 4.40
3974 4349 3.945434 CATCGCGGATGGCAGTGC 61.945 66.667 6.55 6.55 43.84 4.40
3975 4350 3.945434 GCATCGCGGATGGCAGTG 61.945 66.667 6.13 0.00 43.84 3.66
3980 4355 3.359523 CCATGGCATCGCGGATGG 61.360 66.667 6.13 6.93 40.10 3.51
3981 4356 4.034258 GCCATGGCATCGCGGATG 62.034 66.667 32.08 10.18 42.37 3.51
3982 4357 3.779850 AAGCCATGGCATCGCGGAT 62.780 57.895 37.18 12.49 44.88 4.18
3983 4358 4.488136 AAGCCATGGCATCGCGGA 62.488 61.111 37.18 0.00 44.88 5.54
3984 4359 4.260355 CAAGCCATGGCATCGCGG 62.260 66.667 37.18 15.95 44.88 6.46
3985 4360 4.918129 GCAAGCCATGGCATCGCG 62.918 66.667 37.18 20.61 44.88 5.87
3995 4370 1.745115 GAGCGTATGTGGCAAGCCA 60.745 57.895 10.24 10.24 45.02 4.75
3996 4371 2.472909 GGAGCGTATGTGGCAAGCC 61.473 63.158 3.61 3.61 0.00 4.35
3997 4372 2.472909 GGGAGCGTATGTGGCAAGC 61.473 63.158 0.00 0.00 0.00 4.01
3998 4373 1.819632 GGGGAGCGTATGTGGCAAG 60.820 63.158 0.00 0.00 0.00 4.01
3999 4374 2.270850 GGGGAGCGTATGTGGCAA 59.729 61.111 0.00 0.00 0.00 4.52
4000 4375 3.792736 GGGGGAGCGTATGTGGCA 61.793 66.667 0.00 0.00 0.00 4.92
4015 4390 3.717294 CGGGAGTCCACAAGGGGG 61.717 72.222 12.30 0.00 37.22 5.40
4016 4391 4.410400 GCGGGAGTCCACAAGGGG 62.410 72.222 12.30 0.00 37.22 4.79
4017 4392 3.316573 GAGCGGGAGTCCACAAGGG 62.317 68.421 12.30 0.00 34.83 3.95
4018 4393 2.266055 GAGCGGGAGTCCACAAGG 59.734 66.667 12.30 0.00 0.00 3.61
4019 4394 1.374758 GTGAGCGGGAGTCCACAAG 60.375 63.158 12.30 0.03 35.47 3.16
4020 4395 2.099652 CTGTGAGCGGGAGTCCACAA 62.100 60.000 12.30 0.00 41.18 3.33
4021 4396 2.523168 TGTGAGCGGGAGTCCACA 60.523 61.111 12.30 3.10 40.17 4.17
4022 4397 2.262915 CTGTGAGCGGGAGTCCAC 59.737 66.667 12.30 1.99 35.77 4.02
4023 4398 2.997315 CCTGTGAGCGGGAGTCCA 60.997 66.667 12.30 0.00 43.97 4.02
4024 4399 2.680352 TCCTGTGAGCGGGAGTCC 60.680 66.667 0.00 0.00 44.85 3.85
4029 4404 4.135153 CGACCTCCTGTGAGCGGG 62.135 72.222 0.00 0.00 42.59 6.13
4030 4405 4.803426 GCGACCTCCTGTGAGCGG 62.803 72.222 0.00 0.00 37.29 5.52
4031 4406 3.978723 CTGCGACCTCCTGTGAGCG 62.979 68.421 0.00 0.00 37.29 5.03
4032 4407 2.125753 CTGCGACCTCCTGTGAGC 60.126 66.667 0.00 0.00 37.29 4.26
4033 4408 2.125753 GCTGCGACCTCCTGTGAG 60.126 66.667 0.00 0.00 38.42 3.51
4034 4409 3.695606 GGCTGCGACCTCCTGTGA 61.696 66.667 0.00 0.00 0.00 3.58
4035 4410 3.699894 AGGCTGCGACCTCCTGTG 61.700 66.667 0.00 0.00 33.62 3.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.