Multiple sequence alignment - TraesCS5D01G072300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G072300 chr5D 100.000 7302 0 0 1 7302 71906691 71899390 0.000000e+00 13485.0
1 TraesCS5D01G072300 chr5D 86.217 341 33 9 4649 4986 17232531 17232202 2.510000e-94 357.0
2 TraesCS5D01G072300 chr5D 100.000 106 0 0 6481 6586 71900158 71900053 5.780000e-46 196.0
3 TraesCS5D01G072300 chr5D 100.000 106 0 0 6534 6639 71900211 71900106 5.780000e-46 196.0
4 TraesCS5D01G072300 chr5D 100.000 83 0 0 3175 3257 71903476 71903394 3.530000e-33 154.0
5 TraesCS5D01G072300 chr5D 100.000 83 0 0 3216 3298 71903517 71903435 3.530000e-33 154.0
6 TraesCS5D01G072300 chr5D 100.000 53 0 0 6481 6533 71900105 71900053 1.680000e-16 99.0
7 TraesCS5D01G072300 chr5D 100.000 53 0 0 6587 6639 71900211 71900159 1.680000e-16 99.0
8 TraesCS5D01G072300 chr5D 100.000 42 0 0 3175 3216 71903435 71903394 2.180000e-10 78.7
9 TraesCS5D01G072300 chr5D 100.000 42 0 0 3257 3298 71903517 71903476 2.180000e-10 78.7
10 TraesCS5D01G072300 chr5B 95.686 3199 90 17 3257 6424 82459734 82462915 0.000000e+00 5099.0
11 TraesCS5D01G072300 chr5B 95.004 1261 46 5 1958 3216 82458530 82459775 0.000000e+00 1964.0
12 TraesCS5D01G072300 chr5B 92.495 1399 54 19 600 1971 82457044 82458418 0.000000e+00 1954.0
13 TraesCS5D01G072300 chr5B 86.250 320 30 9 6585 6898 82463037 82463348 1.170000e-87 335.0
14 TraesCS5D01G072300 chr5B 87.209 258 9 8 7057 7302 82464192 82464437 9.330000e-69 272.0
15 TraesCS5D01G072300 chr5B 96.053 76 2 1 1 76 82456145 82456219 9.950000e-24 122.0
16 TraesCS5D01G072300 chr5B 87.368 95 8 1 6963 7053 82463353 82463447 1.000000e-18 106.0
17 TraesCS5D01G072300 chr5B 81.250 112 14 6 387 493 472305827 472305718 4.690000e-12 84.2
18 TraesCS5D01G072300 chr5B 100.000 42 0 0 3216 3257 82459734 82459775 2.180000e-10 78.7
19 TraesCS5D01G072300 chr5B 90.566 53 3 2 6532 6583 82463037 82463088 1.310000e-07 69.4
20 TraesCS5D01G072300 chr5A 94.208 2659 90 30 596 3216 64386954 64384322 0.000000e+00 3999.0
21 TraesCS5D01G072300 chr5A 95.738 2182 64 7 3257 5413 64384363 64382186 0.000000e+00 3487.0
22 TraesCS5D01G072300 chr5A 96.281 995 30 5 5411 6405 64382105 64381118 0.000000e+00 1626.0
23 TraesCS5D01G072300 chr5A 83.261 460 46 8 106 539 64387422 64386968 1.910000e-105 394.0
24 TraesCS5D01G072300 chr5A 90.608 181 8 2 6968 7139 64380699 64380519 1.580000e-56 231.0
25 TraesCS5D01G072300 chr5A 86.857 175 18 2 6364 6533 64381102 64380928 2.690000e-44 191.0
26 TraesCS5D01G072300 chr5A 93.750 96 6 0 7207 7302 64380490 64380395 2.120000e-30 145.0
27 TraesCS5D01G072300 chr5A 94.624 93 2 1 6809 6898 64380801 64380709 2.750000e-29 141.0
28 TraesCS5D01G072300 chr5A 81.152 191 18 11 6606 6793 64380961 64380786 3.550000e-28 137.0
29 TraesCS5D01G072300 chr5A 97.619 42 1 0 3216 3257 64384363 64384322 1.020000e-08 73.1
30 TraesCS5D01G072300 chr5A 100.000 34 0 0 6553 6586 64380961 64380928 6.120000e-06 63.9
31 TraesCS5D01G072300 chr1A 85.471 881 100 18 4649 5524 157886782 157887639 0.000000e+00 893.0
32 TraesCS5D01G072300 chr1A 87.842 329 38 1 4923 5249 157886007 157886335 1.150000e-102 385.0
33 TraesCS5D01G072300 chr2B 85.450 811 91 15 4966 5773 691253229 691254015 0.000000e+00 819.0
34 TraesCS5D01G072300 chr2B 85.911 653 66 21 4649 5297 526454327 526454957 0.000000e+00 673.0
35 TraesCS5D01G072300 chr2B 90.415 313 24 6 4660 4969 691251002 691251311 2.450000e-109 407.0
36 TraesCS5D01G072300 chr2B 96.000 50 2 0 6446 6495 45786909 45786860 1.690000e-11 82.4
37 TraesCS5D01G072300 chr1B 87.920 654 64 13 4649 5297 542695901 542696544 0.000000e+00 756.0
38 TraesCS5D01G072300 chr1D 86.538 312 28 8 4649 4958 49586 49885 1.520000e-86 331.0
39 TraesCS5D01G072300 chr1D 91.803 61 4 1 6435 6495 332955050 332955109 4.690000e-12 84.2
40 TraesCS5D01G072300 chr2D 87.266 267 20 8 4691 4954 507440527 507440272 7.170000e-75 292.0
41 TraesCS5D01G072300 chr7B 93.548 62 4 0 6435 6496 27052774 27052713 7.800000e-15 93.5
42 TraesCS5D01G072300 chr4A 92.308 65 5 0 6435 6499 743919048 743919112 7.800000e-15 93.5
43 TraesCS5D01G072300 chr4B 94.915 59 1 2 6447 6504 487655577 487655634 2.810000e-14 91.6
44 TraesCS5D01G072300 chr4B 94.828 58 3 0 6445 6502 670967744 670967801 2.810000e-14 91.6
45 TraesCS5D01G072300 chr2A 91.045 67 5 1 6435 6501 504548086 504548021 1.010000e-13 89.8
46 TraesCS5D01G072300 chr2A 91.803 61 4 1 6435 6495 74165949 74165890 4.690000e-12 84.2
47 TraesCS5D01G072300 chr2A 75.401 187 36 8 299 480 767301002 767300821 1.690000e-11 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G072300 chr5D 71899390 71906691 7301 True 13485.000000 13485 100.000000 1 7302 1 chr5D.!!$R2 7301
1 TraesCS5D01G072300 chr5B 82456145 82464437 8292 False 1111.122222 5099 92.292333 1 7302 9 chr5B.!!$F1 7301
2 TraesCS5D01G072300 chr5A 64380395 64387422 7027 True 953.454545 3999 92.190727 106 7302 11 chr5A.!!$R1 7196
3 TraesCS5D01G072300 chr1A 157886007 157887639 1632 False 639.000000 893 86.656500 4649 5524 2 chr1A.!!$F1 875
4 TraesCS5D01G072300 chr2B 526454327 526454957 630 False 673.000000 673 85.911000 4649 5297 1 chr2B.!!$F1 648
5 TraesCS5D01G072300 chr2B 691251002 691254015 3013 False 613.000000 819 87.932500 4660 5773 2 chr2B.!!$F2 1113
6 TraesCS5D01G072300 chr1B 542695901 542696544 643 False 756.000000 756 87.920000 4649 5297 1 chr1B.!!$F1 648

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
983 1341 1.196581 TCCATGTCACGCATTTGTTCG 59.803 47.619 0.00 0.00 35.19 3.95 F
1090 1449 0.640495 TCTTTATCCTCCCTCCCCGT 59.360 55.000 0.00 0.00 0.00 5.28 F
1353 1722 0.814812 GCCCAAGCTCTGATCTCAGC 60.815 60.000 8.07 8.07 43.46 4.26 F
3033 3547 1.001764 CAAGGGAGCCACATCAGCA 60.002 57.895 0.00 0.00 0.00 4.41 F
3427 3945 0.874390 TCAGCTTGCGGTTTCATGAC 59.126 50.000 0.00 0.00 0.00 3.06 F
4234 4752 1.610886 GGCTGGTTCCTGTTACTGGAC 60.611 57.143 10.53 6.43 31.34 4.02 F
4854 5404 2.485814 GTGCTTGGAATGTCTCACTTCC 59.514 50.000 0.00 0.00 41.13 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1840 2226 0.038166 GTGAGGCCAACCCAGATCAA 59.962 55.000 5.01 0.00 36.11 2.57 R
1971 2393 1.159285 CAAACCGAATGCAGCAGAGA 58.841 50.000 0.00 0.00 0.00 3.10 R
3286 3802 0.036875 AAAGGGGCTCACAGTGTAGC 59.963 55.000 13.63 13.63 38.03 3.58 R
4376 4901 1.213537 CTTGTTGATGGGGCGCTTG 59.786 57.895 7.64 0.00 0.00 4.01 R
4854 5404 1.361668 CGGGAGAGTCCATTGTTGCG 61.362 60.000 0.00 0.00 38.64 4.85 R
5635 8198 1.201343 GAAGGCGACGCTGAGAATAC 58.799 55.000 20.77 0.00 0.00 1.89 R
6702 9335 1.795768 TGTCACTGCGAAGAACCATC 58.204 50.000 0.00 0.00 0.00 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 7.944729 AGAATAACATCACTGTATTTGCCTT 57.055 32.000 0.00 0.00 33.36 4.35
53 54 7.989826 AGAATAACATCACTGTATTTGCCTTC 58.010 34.615 0.00 0.00 33.36 3.46
247 398 8.882415 AAATGAAGCATGCCTTATATTTTGAG 57.118 30.769 15.66 0.00 31.60 3.02
248 399 7.828508 ATGAAGCATGCCTTATATTTTGAGA 57.171 32.000 15.66 0.00 32.78 3.27
250 401 6.602803 TGAAGCATGCCTTATATTTTGAGACA 59.397 34.615 15.66 0.00 32.78 3.41
254 405 7.924412 AGCATGCCTTATATTTTGAGACATTTG 59.076 33.333 15.66 0.00 0.00 2.32
318 495 9.760077 TTTAGATTTCTTCGAAGTCAAACTACT 57.240 29.630 23.85 17.52 0.00 2.57
323 500 7.704789 TTCTTCGAAGTCAAACTACTTTACC 57.295 36.000 23.85 0.00 39.78 2.85
376 553 3.119990 ACATCTACAACGCCAAATTTCCG 60.120 43.478 6.29 6.29 0.00 4.30
382 559 1.600023 ACGCCAAATTTCCGTCAAGA 58.400 45.000 7.41 0.00 0.00 3.02
385 562 2.724174 CGCCAAATTTCCGTCAAGAAAC 59.276 45.455 0.00 0.00 38.51 2.78
500 678 4.846779 TGGCACAATCCTAAAACTTCAC 57.153 40.909 0.00 0.00 31.92 3.18
523 861 6.598064 CACTTATTTTGAAACCGAGGGAGTAT 59.402 38.462 0.00 0.00 0.00 2.12
524 862 6.822170 ACTTATTTTGAAACCGAGGGAGTATC 59.178 38.462 0.00 0.00 0.00 2.24
544 882 5.831702 ATCTGGCTTTGCTTTCTTGATAG 57.168 39.130 0.00 0.00 0.00 2.08
569 907 8.139989 AGCTGAAAAATGATATATTGGTCTTGC 58.860 33.333 0.00 0.00 0.00 4.01
597 935 7.669089 AAAAAGGAGGGAGTATGTTCAAAAA 57.331 32.000 0.00 0.00 0.00 1.94
629 967 3.242446 GGAGTAATAAACTGCTCAAGCGC 60.242 47.826 0.00 0.00 42.92 5.92
983 1341 1.196581 TCCATGTCACGCATTTGTTCG 59.803 47.619 0.00 0.00 35.19 3.95
1080 1438 2.754867 CGGCCTCTCCTCTCTTTATCCT 60.755 54.545 0.00 0.00 0.00 3.24
1090 1449 0.640495 TCTTTATCCTCCCTCCCCGT 59.360 55.000 0.00 0.00 0.00 5.28
1093 1452 1.893588 TTATCCTCCCTCCCCGTGGT 61.894 60.000 0.00 0.00 0.00 4.16
1158 1522 3.276642 TAGTTGGCCCCCTTTCGCC 62.277 63.158 0.00 0.00 45.92 5.54
1247 1615 2.028930 AGTCCAAAGGTAGTTCGCTGAG 60.029 50.000 0.00 0.00 0.00 3.35
1271 1640 5.735070 GCTGTTTAGAATTTTGTGTTCCGGT 60.735 40.000 0.00 0.00 0.00 5.28
1288 1657 1.672356 GTGCTGTTCTGCGATGGGT 60.672 57.895 0.00 0.00 35.36 4.51
1338 1707 1.623311 TCTTCTTTGATCTCGTGCCCA 59.377 47.619 0.00 0.00 0.00 5.36
1353 1722 0.814812 GCCCAAGCTCTGATCTCAGC 60.815 60.000 8.07 8.07 43.46 4.26
1502 1883 6.925165 TGATCAAGTGAAAAGAAAAATCCAGC 59.075 34.615 0.00 0.00 0.00 4.85
1549 1935 7.761651 TGATCTGATCACAAGAGTATTTTCG 57.238 36.000 16.06 0.00 33.59 3.46
1728 2114 7.757941 TTTTGTCTGATTGTATGACCATTGA 57.242 32.000 0.00 0.00 0.00 2.57
1737 2123 5.823209 TGTATGACCATTGATTGCTCTTG 57.177 39.130 0.00 0.00 0.00 3.02
1840 2226 1.764134 TCACCTAACGTGGTTGGAGTT 59.236 47.619 0.00 0.00 43.23 3.01
1996 2418 4.022416 TCTGCTGCATTCGGTTTGTTATTT 60.022 37.500 1.31 0.00 0.00 1.40
2003 2425 6.070829 GCATTCGGTTTGTTATTTTTCTTGC 58.929 36.000 0.00 0.00 0.00 4.01
2097 2608 4.174009 CGATAACTTCTGTTCGATGTGGT 58.826 43.478 0.00 0.00 37.59 4.16
2190 2702 3.119291 GCATGTCACTATGAAGGTCTCG 58.881 50.000 0.00 0.00 0.00 4.04
2372 2884 3.133721 ACCAATCTGAGCATACCAGAGTC 59.866 47.826 0.00 0.00 43.07 3.36
2443 2955 8.390921 TCCCAGTCATTTATCCTTTCTACTTTT 58.609 33.333 0.00 0.00 0.00 2.27
2473 2985 9.424319 TGTAGCTAGTTCTTTCTTGTTCATAAG 57.576 33.333 0.00 0.00 0.00 1.73
2636 3148 3.254657 AGAGCGACAGTGAAGATATAGCC 59.745 47.826 0.00 0.00 0.00 3.93
2672 3184 2.470990 TCCTTAGCAGAGCAAGATCCA 58.529 47.619 0.00 0.00 0.00 3.41
2734 3246 3.769844 TCTTATCCTCTTGCCTCTTCGTT 59.230 43.478 0.00 0.00 0.00 3.85
2746 3258 4.094887 TGCCTCTTCGTTCATTCTATTTGC 59.905 41.667 0.00 0.00 0.00 3.68
2956 3470 4.544564 TCTCCAGGAGAGCCTTAATACT 57.455 45.455 15.98 0.00 43.90 2.12
2970 3484 5.450453 CCTTAATACTGAGTCTCCTCCTCA 58.550 45.833 0.00 0.00 36.86 3.86
2999 3513 3.149196 GCTCCTGTTGAGAATGTTCCAA 58.851 45.455 0.00 0.00 44.42 3.53
3033 3547 1.001764 CAAGGGAGCCACATCAGCA 60.002 57.895 0.00 0.00 0.00 4.41
3083 3597 4.569943 ACTACTGGATGCTACAGTTTGTG 58.430 43.478 12.40 5.62 46.38 3.33
3169 3685 3.979948 TCAACACGTGTTCTATTCGGAA 58.020 40.909 30.24 5.97 35.83 4.30
3170 3686 4.370049 TCAACACGTGTTCTATTCGGAAA 58.630 39.130 30.24 0.82 35.83 3.13
3211 3727 3.838244 TGTTTCTTCACCTGCTACACT 57.162 42.857 0.00 0.00 0.00 3.55
3212 3728 3.466836 TGTTTCTTCACCTGCTACACTG 58.533 45.455 0.00 0.00 0.00 3.66
3213 3729 3.118408 TGTTTCTTCACCTGCTACACTGT 60.118 43.478 0.00 0.00 0.00 3.55
3214 3730 2.820059 TCTTCACCTGCTACACTGTG 57.180 50.000 6.19 6.19 0.00 3.66
3215 3731 2.316108 TCTTCACCTGCTACACTGTGA 58.684 47.619 15.86 0.00 36.04 3.58
3216 3732 2.899900 TCTTCACCTGCTACACTGTGAT 59.100 45.455 15.86 1.48 37.55 3.06
3217 3733 3.324846 TCTTCACCTGCTACACTGTGATT 59.675 43.478 15.86 0.00 37.55 2.57
3218 3734 3.319137 TCACCTGCTACACTGTGATTC 57.681 47.619 15.86 3.14 33.09 2.52
3219 3735 2.899900 TCACCTGCTACACTGTGATTCT 59.100 45.455 15.86 0.00 33.09 2.40
3220 3736 3.324846 TCACCTGCTACACTGTGATTCTT 59.675 43.478 15.86 0.00 33.09 2.52
3221 3737 3.434641 CACCTGCTACACTGTGATTCTTG 59.565 47.826 15.86 1.54 0.00 3.02
3222 3738 3.005554 CCTGCTACACTGTGATTCTTGG 58.994 50.000 15.86 5.58 0.00 3.61
3223 3739 3.557898 CCTGCTACACTGTGATTCTTGGT 60.558 47.826 15.86 0.00 0.00 3.67
3224 3740 4.322725 CCTGCTACACTGTGATTCTTGGTA 60.323 45.833 15.86 0.00 0.00 3.25
3225 3741 5.420725 TGCTACACTGTGATTCTTGGTAT 57.579 39.130 15.86 0.00 0.00 2.73
3226 3742 5.178061 TGCTACACTGTGATTCTTGGTATG 58.822 41.667 15.86 0.00 0.00 2.39
3227 3743 5.178797 GCTACACTGTGATTCTTGGTATGT 58.821 41.667 15.86 0.00 0.00 2.29
3228 3744 6.071051 TGCTACACTGTGATTCTTGGTATGTA 60.071 38.462 15.86 0.00 0.00 2.29
3229 3745 6.477033 GCTACACTGTGATTCTTGGTATGTAG 59.523 42.308 15.86 0.00 39.84 2.74
3230 3746 6.360370 ACACTGTGATTCTTGGTATGTAGT 57.640 37.500 15.86 0.00 0.00 2.73
3231 3747 7.476540 ACACTGTGATTCTTGGTATGTAGTA 57.523 36.000 15.86 0.00 0.00 1.82
3232 3748 8.079211 ACACTGTGATTCTTGGTATGTAGTAT 57.921 34.615 15.86 0.00 0.00 2.12
3233 3749 7.981789 ACACTGTGATTCTTGGTATGTAGTATG 59.018 37.037 15.86 0.00 0.00 2.39
3234 3750 7.981789 CACTGTGATTCTTGGTATGTAGTATGT 59.018 37.037 0.32 0.00 0.00 2.29
3235 3751 8.540388 ACTGTGATTCTTGGTATGTAGTATGTT 58.460 33.333 0.00 0.00 0.00 2.71
3236 3752 9.383519 CTGTGATTCTTGGTATGTAGTATGTTT 57.616 33.333 0.00 0.00 0.00 2.83
3237 3753 9.378551 TGTGATTCTTGGTATGTAGTATGTTTC 57.621 33.333 0.00 0.00 0.00 2.78
3238 3754 9.601217 GTGATTCTTGGTATGTAGTATGTTTCT 57.399 33.333 0.00 0.00 0.00 2.52
3242 3758 8.997621 TCTTGGTATGTAGTATGTTTCTTCAC 57.002 34.615 0.00 0.00 0.00 3.18
3243 3759 8.038944 TCTTGGTATGTAGTATGTTTCTTCACC 58.961 37.037 0.00 0.00 0.00 4.02
3244 3760 7.490657 TGGTATGTAGTATGTTTCTTCACCT 57.509 36.000 0.00 0.00 0.00 4.00
3245 3761 7.327975 TGGTATGTAGTATGTTTCTTCACCTG 58.672 38.462 0.00 0.00 0.00 4.00
3246 3762 6.258068 GGTATGTAGTATGTTTCTTCACCTGC 59.742 42.308 0.00 0.00 0.00 4.85
3247 3763 5.483685 TGTAGTATGTTTCTTCACCTGCT 57.516 39.130 0.00 0.00 0.00 4.24
3248 3764 6.599356 TGTAGTATGTTTCTTCACCTGCTA 57.401 37.500 0.00 0.00 0.00 3.49
3249 3765 6.395629 TGTAGTATGTTTCTTCACCTGCTAC 58.604 40.000 0.00 0.00 33.80 3.58
3250 3766 5.483685 AGTATGTTTCTTCACCTGCTACA 57.516 39.130 0.00 0.00 0.00 2.74
3251 3767 5.238583 AGTATGTTTCTTCACCTGCTACAC 58.761 41.667 0.00 0.00 0.00 2.90
3252 3768 3.838244 TGTTTCTTCACCTGCTACACT 57.162 42.857 0.00 0.00 0.00 3.55
3253 3769 3.466836 TGTTTCTTCACCTGCTACACTG 58.533 45.455 0.00 0.00 0.00 3.66
3254 3770 3.118408 TGTTTCTTCACCTGCTACACTGT 60.118 43.478 0.00 0.00 0.00 3.55
3255 3771 2.820059 TCTTCACCTGCTACACTGTG 57.180 50.000 6.19 6.19 0.00 3.66
3256 3772 2.316108 TCTTCACCTGCTACACTGTGA 58.684 47.619 15.86 0.00 36.04 3.58
3257 3773 2.899900 TCTTCACCTGCTACACTGTGAT 59.100 45.455 15.86 1.48 37.55 3.06
3258 3774 3.324846 TCTTCACCTGCTACACTGTGATT 59.675 43.478 15.86 0.00 37.55 2.57
3259 3775 3.319137 TCACCTGCTACACTGTGATTC 57.681 47.619 15.86 3.14 33.09 2.52
3260 3776 2.899900 TCACCTGCTACACTGTGATTCT 59.100 45.455 15.86 0.00 33.09 2.40
3261 3777 3.324846 TCACCTGCTACACTGTGATTCTT 59.675 43.478 15.86 0.00 33.09 2.52
3262 3778 3.434641 CACCTGCTACACTGTGATTCTTG 59.565 47.826 15.86 1.54 0.00 3.02
3263 3779 3.005554 CCTGCTACACTGTGATTCTTGG 58.994 50.000 15.86 5.58 0.00 3.61
3264 3780 3.557898 CCTGCTACACTGTGATTCTTGGT 60.558 47.826 15.86 0.00 0.00 3.67
3265 3781 4.322725 CCTGCTACACTGTGATTCTTGGTA 60.323 45.833 15.86 0.00 0.00 3.25
3266 3782 5.420725 TGCTACACTGTGATTCTTGGTAT 57.579 39.130 15.86 0.00 0.00 2.73
3267 3783 5.178061 TGCTACACTGTGATTCTTGGTATG 58.822 41.667 15.86 0.00 0.00 2.39
3268 3784 5.178797 GCTACACTGTGATTCTTGGTATGT 58.821 41.667 15.86 0.00 0.00 2.29
3269 3785 6.071051 TGCTACACTGTGATTCTTGGTATGTA 60.071 38.462 15.86 0.00 0.00 2.29
3270 3786 6.477033 GCTACACTGTGATTCTTGGTATGTAG 59.523 42.308 15.86 0.00 39.84 2.74
3271 3787 6.360370 ACACTGTGATTCTTGGTATGTAGT 57.640 37.500 15.86 0.00 0.00 2.73
3272 3788 7.476540 ACACTGTGATTCTTGGTATGTAGTA 57.523 36.000 15.86 0.00 0.00 1.82
3273 3789 8.079211 ACACTGTGATTCTTGGTATGTAGTAT 57.921 34.615 15.86 0.00 0.00 2.12
3274 3790 7.981789 ACACTGTGATTCTTGGTATGTAGTATG 59.018 37.037 15.86 0.00 0.00 2.39
3275 3791 7.981789 CACTGTGATTCTTGGTATGTAGTATGT 59.018 37.037 0.32 0.00 0.00 2.29
3276 3792 8.540388 ACTGTGATTCTTGGTATGTAGTATGTT 58.460 33.333 0.00 0.00 0.00 2.71
3277 3793 9.383519 CTGTGATTCTTGGTATGTAGTATGTTT 57.616 33.333 0.00 0.00 0.00 2.83
3278 3794 9.378551 TGTGATTCTTGGTATGTAGTATGTTTC 57.621 33.333 0.00 0.00 0.00 2.78
3279 3795 9.601217 GTGATTCTTGGTATGTAGTATGTTTCT 57.399 33.333 0.00 0.00 0.00 2.52
3283 3799 8.997621 TCTTGGTATGTAGTATGTTTCTTCAC 57.002 34.615 0.00 0.00 0.00 3.18
3284 3800 8.038944 TCTTGGTATGTAGTATGTTTCTTCACC 58.961 37.037 0.00 0.00 0.00 4.02
3285 3801 7.490657 TGGTATGTAGTATGTTTCTTCACCT 57.509 36.000 0.00 0.00 0.00 4.00
3286 3802 7.327975 TGGTATGTAGTATGTTTCTTCACCTG 58.672 38.462 0.00 0.00 0.00 4.00
3287 3803 6.258068 GGTATGTAGTATGTTTCTTCACCTGC 59.742 42.308 0.00 0.00 0.00 4.85
3288 3804 5.483685 TGTAGTATGTTTCTTCACCTGCT 57.516 39.130 0.00 0.00 0.00 4.24
3289 3805 6.599356 TGTAGTATGTTTCTTCACCTGCTA 57.401 37.500 0.00 0.00 0.00 3.49
3290 3806 6.395629 TGTAGTATGTTTCTTCACCTGCTAC 58.604 40.000 0.00 0.00 33.80 3.58
3291 3807 5.483685 AGTATGTTTCTTCACCTGCTACA 57.516 39.130 0.00 0.00 0.00 2.74
3292 3808 5.238583 AGTATGTTTCTTCACCTGCTACAC 58.761 41.667 0.00 0.00 0.00 2.90
3352 3868 3.865164 TGATCTGGTGATTGAATCGAACG 59.135 43.478 0.18 0.00 32.19 3.95
3404 3920 3.053826 AGGGTCAGTCCTTGGTACTTTT 58.946 45.455 0.00 0.00 32.13 2.27
3417 3933 3.932710 TGGTACTTTTCTATCAGCTTGCG 59.067 43.478 0.00 0.00 0.00 4.85
3427 3945 0.874390 TCAGCTTGCGGTTTCATGAC 59.126 50.000 0.00 0.00 0.00 3.06
3482 4000 4.687483 AGCATTTTTCATAAAGCACAGCAC 59.313 37.500 0.00 0.00 0.00 4.40
3483 4001 4.448395 GCATTTTTCATAAAGCACAGCACA 59.552 37.500 0.00 0.00 0.00 4.57
3484 4002 5.389098 GCATTTTTCATAAAGCACAGCACAG 60.389 40.000 0.00 0.00 0.00 3.66
3511 4029 4.558095 GCTCCATAGTATGCAAATTGGCTG 60.558 45.833 6.34 0.00 34.04 4.85
3606 4124 6.428159 CAGAAGAACCTACTATTGTGTGCTTT 59.572 38.462 0.00 0.00 0.00 3.51
3760 4278 5.660417 AGCCCATATCAGAGTATGAGGTATG 59.340 44.000 0.00 0.00 42.53 2.39
3778 4296 7.336176 TGAGGTATGTAAGCCTACTATATCACG 59.664 40.741 0.00 0.00 34.81 4.35
3783 4301 6.772605 TGTAAGCCTACTATATCACGACCTA 58.227 40.000 0.00 0.00 0.00 3.08
3872 4390 2.621407 CCAGCCATACCACAAATCCTGT 60.621 50.000 0.00 0.00 39.56 4.00
4062 4580 2.710096 TCCCCAGATTCCGACAAATC 57.290 50.000 0.00 0.00 36.16 2.17
4234 4752 1.610886 GGCTGGTTCCTGTTACTGGAC 60.611 57.143 10.53 6.43 31.34 4.02
4321 4839 4.688413 TGAGAAAACGCAAAAGCTTTTGTT 59.312 33.333 38.57 29.25 46.92 2.83
4338 4856 6.195983 GCTTTTGTTTCGATGCATTGATAGAG 59.804 38.462 17.46 10.50 0.00 2.43
4340 4858 6.983474 TTGTTTCGATGCATTGATAGAGAA 57.017 33.333 17.46 5.73 0.00 2.87
4376 4901 4.734695 GCATAAGACTAGGCAAATGCAACC 60.735 45.833 23.31 1.50 44.36 3.77
4473 4998 6.166984 TCAAAATAATGTTCTTGGTGCCAA 57.833 33.333 3.43 3.43 0.00 4.52
4482 5007 6.698008 TGTTCTTGGTGCCAATATAATGAG 57.302 37.500 3.91 0.00 35.20 2.90
4594 5136 2.751806 GGATCTTGAAACTCTGGCTTGG 59.248 50.000 0.00 0.00 0.00 3.61
4605 5147 4.860022 ACTCTGGCTTGGTATAATGCTTT 58.140 39.130 0.00 0.00 0.00 3.51
4607 5149 5.823045 ACTCTGGCTTGGTATAATGCTTTAC 59.177 40.000 0.00 0.00 0.00 2.01
4771 5321 8.730970 AGATTATCTAGAGTAATTCGTTTCGC 57.269 34.615 0.00 0.00 0.00 4.70
4854 5404 2.485814 GTGCTTGGAATGTCTCACTTCC 59.514 50.000 0.00 0.00 41.13 3.46
5630 8193 5.643379 TTAGTTGGATTCACTTGCATTCC 57.357 39.130 0.00 0.00 0.00 3.01
5635 8198 2.033801 GGATTCACTTGCATTCCCATCG 59.966 50.000 0.00 0.00 0.00 3.84
5724 8287 3.474798 TCTGTCAAGTCCTATCCCACT 57.525 47.619 0.00 0.00 0.00 4.00
5825 8388 4.804261 GCAGCTCCTACCTCTTCAAAGAAA 60.804 45.833 0.00 0.00 34.03 2.52
5831 8394 3.864789 ACCTCTTCAAAGAAAGGAGCA 57.135 42.857 11.99 0.00 34.03 4.26
5976 8539 6.146760 AGAAGTACCCTTGATCATATGAGGT 58.853 40.000 15.60 15.60 0.00 3.85
6009 8572 7.503566 GGTCCTTTCCTTATTGATGATCATTCA 59.496 37.037 10.14 6.69 36.00 2.57
6010 8573 8.906867 GTCCTTTCCTTATTGATGATCATTCAA 58.093 33.333 10.14 14.73 34.96 2.69
6011 8574 9.650714 TCCTTTCCTTATTGATGATCATTCAAT 57.349 29.630 24.18 24.18 37.73 2.57
6088 8657 7.201902 GGTTATTTGGTGGAATTAGATGCATCA 60.202 37.037 27.81 9.38 29.13 3.07
6089 8658 6.989155 ATTTGGTGGAATTAGATGCATCAT 57.011 33.333 27.81 15.23 31.49 2.45
6312 8882 8.303876 GGAGTACAACATTTGGATAAATTGTGT 58.696 33.333 0.00 0.00 34.34 3.72
6337 8907 3.764885 AATGTTCTTATCAACTGCGCC 57.235 42.857 4.18 0.00 0.00 6.53
6338 8908 1.448985 TGTTCTTATCAACTGCGCCC 58.551 50.000 4.18 0.00 0.00 6.13
6346 8916 2.121291 TCAACTGCGCCCATCATTTA 57.879 45.000 4.18 0.00 0.00 1.40
6367 8937 9.345517 CATTTATGTTTCACTATGAACAAGTGG 57.654 33.333 3.60 0.00 43.69 4.00
6368 8938 4.829064 TGTTTCACTATGAACAAGTGGC 57.171 40.909 3.60 0.00 43.69 5.01
6369 8939 4.460263 TGTTTCACTATGAACAAGTGGCT 58.540 39.130 3.60 0.00 43.69 4.75
6418 9050 1.904144 CACCGACGTACCATACACAG 58.096 55.000 0.00 0.00 0.00 3.66
6422 9055 1.468565 CGACGTACCATACACAGGTGG 60.469 57.143 4.24 0.00 40.26 4.61
6443 9076 2.289506 GCCGTTCCATTATACTCCCTCC 60.290 54.545 0.00 0.00 0.00 4.30
6444 9077 2.969950 CCGTTCCATTATACTCCCTCCA 59.030 50.000 0.00 0.00 0.00 3.86
6481 9114 4.477302 AAAACCACGACAAGTATTTCGG 57.523 40.909 0.00 0.00 39.63 4.30
6504 9137 7.143514 GGAACGGAGGAAGTACTATATAGTG 57.856 44.000 23.09 7.44 37.10 2.74
6505 9138 6.714356 GGAACGGAGGAAGTACTATATAGTGT 59.286 42.308 23.09 9.28 37.10 3.55
6506 9139 7.880195 GGAACGGAGGAAGTACTATATAGTGTA 59.120 40.741 23.09 3.58 37.10 2.90
6507 9140 8.845413 AACGGAGGAAGTACTATATAGTGTAG 57.155 38.462 23.09 8.19 37.10 2.74
6508 9141 7.393216 ACGGAGGAAGTACTATATAGTGTAGG 58.607 42.308 23.09 7.09 37.10 3.18
6509 9142 7.017056 ACGGAGGAAGTACTATATAGTGTAGGT 59.983 40.741 23.09 6.00 37.10 3.08
6510 9143 7.882271 CGGAGGAAGTACTATATAGTGTAGGTT 59.118 40.741 23.09 10.16 37.10 3.50
6527 9160 9.975218 AGTGTAGGTTAAATTAGGAACATTCAT 57.025 29.630 0.00 0.00 0.00 2.57
6537 9170 9.710900 AAATTAGGAACATTCATTTCTTGGAAC 57.289 29.630 0.00 0.00 0.00 3.62
6538 9171 5.376854 AGGAACATTCATTTCTTGGAACG 57.623 39.130 0.00 0.00 0.00 3.95
6539 9172 4.218417 AGGAACATTCATTTCTTGGAACGG 59.782 41.667 0.00 0.00 0.00 4.44
6540 9173 4.217550 GGAACATTCATTTCTTGGAACGGA 59.782 41.667 0.00 0.00 0.00 4.69
6541 9174 5.376854 AACATTCATTTCTTGGAACGGAG 57.623 39.130 0.00 0.00 0.00 4.63
6542 9175 3.758554 ACATTCATTTCTTGGAACGGAGG 59.241 43.478 0.00 0.00 0.00 4.30
6543 9176 3.780804 TTCATTTCTTGGAACGGAGGA 57.219 42.857 0.00 0.00 0.00 3.71
6544 9177 3.780804 TCATTTCTTGGAACGGAGGAA 57.219 42.857 0.00 0.00 0.00 3.36
6545 9178 3.674997 TCATTTCTTGGAACGGAGGAAG 58.325 45.455 0.00 0.00 0.00 3.46
6546 9179 3.072476 TCATTTCTTGGAACGGAGGAAGT 59.928 43.478 0.00 0.00 0.00 3.01
6547 9180 4.285003 TCATTTCTTGGAACGGAGGAAGTA 59.715 41.667 0.00 0.00 0.00 2.24
6548 9181 3.672767 TTCTTGGAACGGAGGAAGTAC 57.327 47.619 0.00 0.00 0.00 2.73
6549 9182 2.885616 TCTTGGAACGGAGGAAGTACT 58.114 47.619 0.00 0.00 0.00 2.73
6550 9183 4.038271 TCTTGGAACGGAGGAAGTACTA 57.962 45.455 0.00 0.00 0.00 1.82
6551 9184 4.607239 TCTTGGAACGGAGGAAGTACTAT 58.393 43.478 0.00 0.00 0.00 2.12
6552 9185 5.759059 TCTTGGAACGGAGGAAGTACTATA 58.241 41.667 0.00 0.00 0.00 1.31
6553 9186 6.371278 TCTTGGAACGGAGGAAGTACTATAT 58.629 40.000 0.00 0.00 0.00 0.86
6554 9187 7.520798 TCTTGGAACGGAGGAAGTACTATATA 58.479 38.462 0.00 0.00 0.00 0.86
6555 9188 7.664731 TCTTGGAACGGAGGAAGTACTATATAG 59.335 40.741 8.27 8.27 0.00 1.31
6556 9189 6.845908 TGGAACGGAGGAAGTACTATATAGT 58.154 40.000 19.07 19.07 40.24 2.12
6557 9190 6.713903 TGGAACGGAGGAAGTACTATATAGTG 59.286 42.308 23.09 7.44 37.10 2.74
6558 9191 6.714356 GGAACGGAGGAAGTACTATATAGTGT 59.286 42.308 23.09 9.28 37.10 3.55
6559 9192 7.880195 GGAACGGAGGAAGTACTATATAGTGTA 59.120 40.741 23.09 3.58 37.10 2.90
6560 9193 8.845413 AACGGAGGAAGTACTATATAGTGTAG 57.155 38.462 23.09 8.19 37.10 2.74
6561 9194 7.393216 ACGGAGGAAGTACTATATAGTGTAGG 58.607 42.308 23.09 7.09 37.10 3.18
6562 9195 7.017056 ACGGAGGAAGTACTATATAGTGTAGGT 59.983 40.741 23.09 6.00 37.10 3.08
6563 9196 7.882271 CGGAGGAAGTACTATATAGTGTAGGTT 59.118 40.741 23.09 10.16 37.10 3.50
6580 9213 9.975218 AGTGTAGGTTAAATTAGGAACATTCAT 57.025 29.630 0.00 0.00 0.00 2.57
6590 9223 9.710900 AAATTAGGAACATTCATTTCTTGGAAC 57.289 29.630 0.00 0.00 0.00 3.62
6591 9224 5.376854 AGGAACATTCATTTCTTGGAACG 57.623 39.130 0.00 0.00 0.00 3.95
6592 9225 4.218417 AGGAACATTCATTTCTTGGAACGG 59.782 41.667 0.00 0.00 0.00 4.44
6593 9226 4.217550 GGAACATTCATTTCTTGGAACGGA 59.782 41.667 0.00 0.00 0.00 4.69
6594 9227 5.376854 AACATTCATTTCTTGGAACGGAG 57.623 39.130 0.00 0.00 0.00 4.63
6595 9228 3.758554 ACATTCATTTCTTGGAACGGAGG 59.241 43.478 0.00 0.00 0.00 4.30
6596 9229 3.780804 TTCATTTCTTGGAACGGAGGA 57.219 42.857 0.00 0.00 0.00 3.71
6597 9230 3.780804 TCATTTCTTGGAACGGAGGAA 57.219 42.857 0.00 0.00 0.00 3.36
6598 9231 3.674997 TCATTTCTTGGAACGGAGGAAG 58.325 45.455 0.00 0.00 0.00 3.46
6599 9232 3.072476 TCATTTCTTGGAACGGAGGAAGT 59.928 43.478 0.00 0.00 0.00 3.01
6600 9233 4.285003 TCATTTCTTGGAACGGAGGAAGTA 59.715 41.667 0.00 0.00 0.00 2.24
6601 9234 3.672767 TTCTTGGAACGGAGGAAGTAC 57.327 47.619 0.00 0.00 0.00 2.73
6652 9285 8.517878 ACATTCATTTCTTTCTCAATGTTCGAT 58.482 29.630 0.00 0.00 31.88 3.59
6653 9286 8.795341 CATTCATTTCTTTCTCAATGTTCGATG 58.205 33.333 0.00 0.00 32.96 3.84
6690 9323 4.383444 CCTTGTGTGCTCCTATGAATCTCA 60.383 45.833 0.00 0.00 0.00 3.27
6693 9326 5.748402 TGTGTGCTCCTATGAATCTCATTT 58.252 37.500 0.00 0.00 38.26 2.32
6694 9327 6.182627 TGTGTGCTCCTATGAATCTCATTTT 58.817 36.000 0.00 0.00 38.26 1.82
6695 9328 6.660521 TGTGTGCTCCTATGAATCTCATTTTT 59.339 34.615 0.00 0.00 38.26 1.94
6712 9345 9.388506 TCTCATTTTTAGATCAGATGGTTCTTC 57.611 33.333 0.00 0.00 0.00 2.87
6721 9354 1.344438 AGATGGTTCTTCGCAGTGACA 59.656 47.619 0.00 0.00 0.00 3.58
6743 9376 6.942976 ACATAGAAATAGTCGTCTGGGAAAA 58.057 36.000 0.00 0.00 0.00 2.29
6744 9377 7.042335 ACATAGAAATAGTCGTCTGGGAAAAG 58.958 38.462 0.00 0.00 0.00 2.27
6796 9433 7.240674 TCAACGAGATGAAAAACGGAATATTG 58.759 34.615 0.00 0.00 0.00 1.90
6898 9539 8.070034 TCTTTGATCATGTATGCAAAATTCCT 57.930 30.769 0.00 0.00 30.78 3.36
6900 9541 9.158233 CTTTGATCATGTATGCAAAATTCCTTT 57.842 29.630 0.00 0.00 30.78 3.11
6901 9542 8.706492 TTGATCATGTATGCAAAATTCCTTTC 57.294 30.769 0.00 0.00 0.00 2.62
6902 9543 7.267128 TGATCATGTATGCAAAATTCCTTTCC 58.733 34.615 0.00 0.00 0.00 3.13
6903 9544 5.976458 TCATGTATGCAAAATTCCTTTCCC 58.024 37.500 0.00 0.00 0.00 3.97
6904 9545 5.721000 TCATGTATGCAAAATTCCTTTCCCT 59.279 36.000 0.00 0.00 0.00 4.20
6905 9546 6.894654 TCATGTATGCAAAATTCCTTTCCCTA 59.105 34.615 0.00 0.00 0.00 3.53
6906 9547 7.398618 TCATGTATGCAAAATTCCTTTCCCTAA 59.601 33.333 0.00 0.00 0.00 2.69
6907 9548 7.546250 TGTATGCAAAATTCCTTTCCCTAAA 57.454 32.000 0.00 0.00 0.00 1.85
6908 9549 7.967908 TGTATGCAAAATTCCTTTCCCTAAAA 58.032 30.769 0.00 0.00 0.00 1.52
6909 9550 8.432805 TGTATGCAAAATTCCTTTCCCTAAAAA 58.567 29.630 0.00 0.00 0.00 1.94
6932 9573 7.999450 AAAAATGTATGCAAAATTCCACCAT 57.001 28.000 0.00 0.00 0.00 3.55
6934 9575 8.491331 AAAATGTATGCAAAATTCCACCATAC 57.509 30.769 0.00 0.00 38.94 2.39
6935 9576 7.422465 AATGTATGCAAAATTCCACCATACT 57.578 32.000 14.29 4.17 39.13 2.12
6936 9577 6.449635 TGTATGCAAAATTCCACCATACTC 57.550 37.500 14.29 0.00 39.13 2.59
6937 9578 5.948758 TGTATGCAAAATTCCACCATACTCA 59.051 36.000 14.29 0.00 39.13 3.41
6938 9579 6.606796 TGTATGCAAAATTCCACCATACTCAT 59.393 34.615 14.29 0.00 39.13 2.90
6939 9580 7.777440 TGTATGCAAAATTCCACCATACTCATA 59.223 33.333 14.29 0.00 39.13 2.15
6940 9581 6.449635 TGCAAAATTCCACCATACTCATAC 57.550 37.500 0.00 0.00 0.00 2.39
6941 9582 6.186957 TGCAAAATTCCACCATACTCATACT 58.813 36.000 0.00 0.00 0.00 2.12
6942 9583 7.342581 TGCAAAATTCCACCATACTCATACTA 58.657 34.615 0.00 0.00 0.00 1.82
6943 9584 7.998383 TGCAAAATTCCACCATACTCATACTAT 59.002 33.333 0.00 0.00 0.00 2.12
6944 9585 8.850156 GCAAAATTCCACCATACTCATACTATT 58.150 33.333 0.00 0.00 0.00 1.73
6970 9611 7.789273 TTTTTGTGAGAAACCGTACTTCATA 57.211 32.000 0.00 0.00 0.00 2.15
7161 10550 3.851128 GAGGGCCAGCGGGTACTC 61.851 72.222 6.18 8.83 36.17 2.59
7226 10624 2.683933 TTCCGGCTCCTCTCCCAC 60.684 66.667 0.00 0.00 0.00 4.61
7232 10630 0.325203 GGCTCCTCTCCCACTCTTCT 60.325 60.000 0.00 0.00 0.00 2.85
7235 10633 0.336737 TCCTCTCCCACTCTTCTCCC 59.663 60.000 0.00 0.00 0.00 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
142 143 9.125026 TCTTCTTCTCCCTAATATGCAATTTTC 57.875 33.333 0.00 0.00 0.00 2.29
149 150 9.561069 TGTAATTTCTTCTTCTCCCTAATATGC 57.439 33.333 0.00 0.00 0.00 3.14
205 206 9.612066 TGCTTCATTTTAAAGAAAGGATTTTGT 57.388 25.926 7.82 0.00 39.27 2.83
305 482 7.062722 GGTCATACGGTAAAGTAGTTTGACTTC 59.937 40.741 5.77 1.05 42.38 3.01
350 527 7.033185 GGAAATTTGGCGTTGTAGATGTTAAT 58.967 34.615 0.00 0.00 0.00 1.40
500 678 7.011482 CAGATACTCCCTCGGTTTCAAAATAAG 59.989 40.741 0.00 0.00 0.00 1.73
508 686 1.202545 GCCAGATACTCCCTCGGTTTC 60.203 57.143 0.00 0.00 0.00 2.78
523 861 3.441572 GCTATCAAGAAAGCAAAGCCAGA 59.558 43.478 0.00 0.00 38.63 3.86
524 862 3.442977 AGCTATCAAGAAAGCAAAGCCAG 59.557 43.478 0.00 0.00 41.32 4.85
544 882 7.922278 TGCAAGACCAATATATCATTTTTCAGC 59.078 33.333 0.00 0.00 0.00 4.26
598 936 6.552932 AGCAGTTTATTACTCCCTCCTTTTT 58.447 36.000 0.00 0.00 33.85 1.94
599 937 6.140968 AGCAGTTTATTACTCCCTCCTTTT 57.859 37.500 0.00 0.00 33.85 2.27
600 938 5.250774 TGAGCAGTTTATTACTCCCTCCTTT 59.749 40.000 0.00 0.00 33.85 3.11
601 939 4.783227 TGAGCAGTTTATTACTCCCTCCTT 59.217 41.667 0.00 0.00 33.85 3.36
602 940 4.362677 TGAGCAGTTTATTACTCCCTCCT 58.637 43.478 0.00 0.00 33.85 3.69
603 941 4.755266 TGAGCAGTTTATTACTCCCTCC 57.245 45.455 0.00 0.00 33.85 4.30
604 942 4.572795 GCTTGAGCAGTTTATTACTCCCTC 59.427 45.833 0.00 0.00 41.59 4.30
605 943 4.518249 GCTTGAGCAGTTTATTACTCCCT 58.482 43.478 0.00 0.00 41.59 4.20
606 944 3.309954 CGCTTGAGCAGTTTATTACTCCC 59.690 47.826 3.65 0.00 42.21 4.30
607 945 3.242446 GCGCTTGAGCAGTTTATTACTCC 60.242 47.826 0.00 0.00 42.21 3.85
608 946 3.542291 CGCGCTTGAGCAGTTTATTACTC 60.542 47.826 5.56 0.00 42.21 2.59
652 990 0.531974 GTGTCCGCTGGTTGACTTGA 60.532 55.000 0.00 0.00 32.67 3.02
934 1288 2.852075 GGTGGTGGTGGAGGTGGA 60.852 66.667 0.00 0.00 0.00 4.02
935 1289 2.854032 AGGTGGTGGTGGAGGTGG 60.854 66.667 0.00 0.00 0.00 4.61
936 1290 2.750350 GAGGTGGTGGTGGAGGTG 59.250 66.667 0.00 0.00 0.00 4.00
983 1341 3.373565 CGGGGTGGGAGCAAAAGC 61.374 66.667 0.00 0.00 0.00 3.51
1093 1452 3.666253 TCTTGTGCTCGACGGCGA 61.666 61.111 15.22 15.22 45.71 5.54
1105 1464 2.426023 GAGCCACCGGTGTCTTGT 59.574 61.111 31.80 12.09 0.00 3.16
1138 1501 1.378119 CGAAAGGGGGCCAACTACC 60.378 63.158 4.39 0.00 0.00 3.18
1158 1522 1.281899 GATCGCCAAGAAGAACCGAG 58.718 55.000 0.00 0.00 0.00 4.63
1189 1557 1.069255 GGAAAGAAAGAGCGTCGGAC 58.931 55.000 0.00 0.00 0.00 4.79
1221 1589 2.670509 CGAACTACCTTTGGACTCGACC 60.671 54.545 0.00 0.00 0.00 4.79
1247 1615 4.679654 CCGGAACACAAAATTCTAAACAGC 59.320 41.667 0.00 0.00 0.00 4.40
1271 1640 1.375908 GACCCATCGCAGAACAGCA 60.376 57.895 0.00 0.00 43.58 4.41
1314 1683 5.059833 GGGCACGAGATCAAAGAAGAATAT 58.940 41.667 0.00 0.00 0.00 1.28
1316 1685 3.274288 GGGCACGAGATCAAAGAAGAAT 58.726 45.455 0.00 0.00 0.00 2.40
1338 1707 2.833338 AGAACAGCTGAGATCAGAGCTT 59.167 45.455 23.35 0.00 43.15 3.74
1353 1722 7.756722 ACTGAACAACAAGAAAATCAAGAACAG 59.243 33.333 0.00 0.00 0.00 3.16
1502 1883 3.384789 TCAGAAGGTGGTATCGGAATCAG 59.615 47.826 0.00 0.00 0.00 2.90
1549 1935 2.370189 AGGGGTAGCATGATTAGACAGC 59.630 50.000 0.00 0.00 0.00 4.40
1602 1988 1.066002 CCGGCAAGATTCGCAATCATT 59.934 47.619 10.26 1.95 40.42 2.57
1795 2181 7.452880 TGACCTGATATTTTTCTTCACAAGG 57.547 36.000 0.00 0.00 0.00 3.61
1840 2226 0.038166 GTGAGGCCAACCCAGATCAA 59.962 55.000 5.01 0.00 36.11 2.57
1921 2307 4.068599 CCTGGAAAACCTCTGAGAACTTC 58.931 47.826 6.17 5.32 0.00 3.01
1971 2393 1.159285 CAAACCGAATGCAGCAGAGA 58.841 50.000 0.00 0.00 0.00 3.10
1996 2418 8.257306 AGGAAACAAGAACAAAATAGCAAGAAA 58.743 29.630 0.00 0.00 0.00 2.52
2003 2425 6.142817 CCACGAGGAAACAAGAACAAAATAG 58.857 40.000 0.00 0.00 36.89 1.73
2190 2702 6.202226 GGTGAATTCAGAAACAGAACTTGTC 58.798 40.000 8.80 0.00 39.73 3.18
2372 2884 6.551385 AGTGAAGTAAATGACAAGAAGCTG 57.449 37.500 0.00 0.00 0.00 4.24
2443 2955 9.772973 TGAACAAGAAAGAACTAGCTACAATAA 57.227 29.630 0.00 0.00 0.00 1.40
2473 2985 2.169832 TGCTTCCTTGTGTAGACAGC 57.830 50.000 0.00 0.00 32.26 4.40
2672 3184 7.419203 ACTAACCAATAGCCTTTCCCTTATTT 58.581 34.615 0.00 0.00 34.78 1.40
2970 3484 5.479375 ACATTCTCAACAGGAGCATTTTGAT 59.521 36.000 0.00 0.00 43.70 2.57
2999 3513 2.114616 CCTTGCTGGGATACTCTCTGT 58.885 52.381 0.00 0.00 0.00 3.41
3137 3653 4.491234 ACACGTGTTGAGAAAACAAACA 57.509 36.364 17.22 0.00 31.20 2.83
3211 3727 9.378551 GAAACATACTACATACCAAGAATCACA 57.621 33.333 0.00 0.00 0.00 3.58
3212 3728 9.601217 AGAAACATACTACATACCAAGAATCAC 57.399 33.333 0.00 0.00 0.00 3.06
3216 3732 9.431887 GTGAAGAAACATACTACATACCAAGAA 57.568 33.333 0.00 0.00 0.00 2.52
3217 3733 8.038944 GGTGAAGAAACATACTACATACCAAGA 58.961 37.037 0.00 0.00 0.00 3.02
3218 3734 8.041323 AGGTGAAGAAACATACTACATACCAAG 58.959 37.037 0.00 0.00 0.00 3.61
3219 3735 7.822334 CAGGTGAAGAAACATACTACATACCAA 59.178 37.037 0.00 0.00 0.00 3.67
3220 3736 7.327975 CAGGTGAAGAAACATACTACATACCA 58.672 38.462 0.00 0.00 0.00 3.25
3221 3737 6.258068 GCAGGTGAAGAAACATACTACATACC 59.742 42.308 0.00 0.00 0.00 2.73
3222 3738 7.042335 AGCAGGTGAAGAAACATACTACATAC 58.958 38.462 0.00 0.00 0.00 2.39
3223 3739 7.182817 AGCAGGTGAAGAAACATACTACATA 57.817 36.000 0.00 0.00 0.00 2.29
3224 3740 6.054860 AGCAGGTGAAGAAACATACTACAT 57.945 37.500 0.00 0.00 0.00 2.29
3225 3741 5.483685 AGCAGGTGAAGAAACATACTACA 57.516 39.130 0.00 0.00 0.00 2.74
3226 3742 6.310711 GTGTAGCAGGTGAAGAAACATACTAC 59.689 42.308 0.00 0.00 0.00 2.73
3227 3743 6.210784 AGTGTAGCAGGTGAAGAAACATACTA 59.789 38.462 0.00 0.00 0.00 1.82
3228 3744 5.012148 AGTGTAGCAGGTGAAGAAACATACT 59.988 40.000 0.00 0.00 0.00 2.12
3229 3745 5.120830 CAGTGTAGCAGGTGAAGAAACATAC 59.879 44.000 0.00 0.00 0.00 2.39
3230 3746 5.221641 ACAGTGTAGCAGGTGAAGAAACATA 60.222 40.000 0.00 0.00 0.00 2.29
3231 3747 4.067896 CAGTGTAGCAGGTGAAGAAACAT 58.932 43.478 0.00 0.00 0.00 2.71
3232 3748 3.118408 ACAGTGTAGCAGGTGAAGAAACA 60.118 43.478 0.00 0.00 0.00 2.83
3233 3749 3.248602 CACAGTGTAGCAGGTGAAGAAAC 59.751 47.826 0.00 0.00 33.16 2.78
3234 3750 3.133901 TCACAGTGTAGCAGGTGAAGAAA 59.866 43.478 0.00 0.00 37.33 2.52
3235 3751 2.698274 TCACAGTGTAGCAGGTGAAGAA 59.302 45.455 0.00 0.00 37.33 2.52
3236 3752 2.316108 TCACAGTGTAGCAGGTGAAGA 58.684 47.619 0.00 0.00 37.33 2.87
3237 3753 2.820059 TCACAGTGTAGCAGGTGAAG 57.180 50.000 0.00 0.00 37.33 3.02
3238 3754 3.324846 AGAATCACAGTGTAGCAGGTGAA 59.675 43.478 0.00 0.00 42.83 3.18
3239 3755 2.899900 AGAATCACAGTGTAGCAGGTGA 59.100 45.455 0.00 0.00 43.61 4.02
3240 3756 3.325293 AGAATCACAGTGTAGCAGGTG 57.675 47.619 0.00 0.00 0.00 4.00
3241 3757 3.557898 CCAAGAATCACAGTGTAGCAGGT 60.558 47.826 0.00 0.00 0.00 4.00
3242 3758 3.005554 CCAAGAATCACAGTGTAGCAGG 58.994 50.000 0.00 0.00 0.00 4.85
3243 3759 3.668447 ACCAAGAATCACAGTGTAGCAG 58.332 45.455 0.00 0.00 0.00 4.24
3244 3760 3.769739 ACCAAGAATCACAGTGTAGCA 57.230 42.857 0.00 0.00 0.00 3.49
3245 3761 5.178797 ACATACCAAGAATCACAGTGTAGC 58.821 41.667 0.00 0.00 0.00 3.58
3246 3762 7.548097 ACTACATACCAAGAATCACAGTGTAG 58.452 38.462 0.00 0.00 41.17 2.74
3247 3763 7.476540 ACTACATACCAAGAATCACAGTGTA 57.523 36.000 0.00 0.00 0.00 2.90
3248 3764 6.360370 ACTACATACCAAGAATCACAGTGT 57.640 37.500 0.00 0.00 0.00 3.55
3249 3765 7.981789 ACATACTACATACCAAGAATCACAGTG 59.018 37.037 0.00 0.00 0.00 3.66
3250 3766 8.079211 ACATACTACATACCAAGAATCACAGT 57.921 34.615 0.00 0.00 0.00 3.55
3251 3767 8.948631 AACATACTACATACCAAGAATCACAG 57.051 34.615 0.00 0.00 0.00 3.66
3252 3768 9.378551 GAAACATACTACATACCAAGAATCACA 57.621 33.333 0.00 0.00 0.00 3.58
3253 3769 9.601217 AGAAACATACTACATACCAAGAATCAC 57.399 33.333 0.00 0.00 0.00 3.06
3257 3773 9.431887 GTGAAGAAACATACTACATACCAAGAA 57.568 33.333 0.00 0.00 0.00 2.52
3258 3774 8.038944 GGTGAAGAAACATACTACATACCAAGA 58.961 37.037 0.00 0.00 0.00 3.02
3259 3775 8.041323 AGGTGAAGAAACATACTACATACCAAG 58.959 37.037 0.00 0.00 0.00 3.61
3260 3776 7.822334 CAGGTGAAGAAACATACTACATACCAA 59.178 37.037 0.00 0.00 0.00 3.67
3261 3777 7.327975 CAGGTGAAGAAACATACTACATACCA 58.672 38.462 0.00 0.00 0.00 3.25
3262 3778 6.258068 GCAGGTGAAGAAACATACTACATACC 59.742 42.308 0.00 0.00 0.00 2.73
3263 3779 7.042335 AGCAGGTGAAGAAACATACTACATAC 58.958 38.462 0.00 0.00 0.00 2.39
3264 3780 7.182817 AGCAGGTGAAGAAACATACTACATA 57.817 36.000 0.00 0.00 0.00 2.29
3265 3781 6.054860 AGCAGGTGAAGAAACATACTACAT 57.945 37.500 0.00 0.00 0.00 2.29
3266 3782 5.483685 AGCAGGTGAAGAAACATACTACA 57.516 39.130 0.00 0.00 0.00 2.74
3267 3783 6.310711 GTGTAGCAGGTGAAGAAACATACTAC 59.689 42.308 0.00 0.00 0.00 2.73
3268 3784 6.210784 AGTGTAGCAGGTGAAGAAACATACTA 59.789 38.462 0.00 0.00 0.00 1.82
3269 3785 5.012148 AGTGTAGCAGGTGAAGAAACATACT 59.988 40.000 0.00 0.00 0.00 2.12
3270 3786 5.120830 CAGTGTAGCAGGTGAAGAAACATAC 59.879 44.000 0.00 0.00 0.00 2.39
3271 3787 5.221641 ACAGTGTAGCAGGTGAAGAAACATA 60.222 40.000 0.00 0.00 0.00 2.29
3272 3788 4.067896 CAGTGTAGCAGGTGAAGAAACAT 58.932 43.478 0.00 0.00 0.00 2.71
3273 3789 3.118408 ACAGTGTAGCAGGTGAAGAAACA 60.118 43.478 0.00 0.00 0.00 2.83
3274 3790 3.248602 CACAGTGTAGCAGGTGAAGAAAC 59.751 47.826 0.00 0.00 33.16 2.78
3275 3791 3.133901 TCACAGTGTAGCAGGTGAAGAAA 59.866 43.478 0.00 0.00 37.33 2.52
3276 3792 2.698274 TCACAGTGTAGCAGGTGAAGAA 59.302 45.455 0.00 0.00 37.33 2.52
3277 3793 2.297315 CTCACAGTGTAGCAGGTGAAGA 59.703 50.000 0.00 0.00 39.53 2.87
3278 3794 2.681706 CTCACAGTGTAGCAGGTGAAG 58.318 52.381 0.00 0.00 39.53 3.02
3279 3795 1.270305 GCTCACAGTGTAGCAGGTGAA 60.270 52.381 15.94 0.00 39.53 3.18
3280 3796 0.318441 GCTCACAGTGTAGCAGGTGA 59.682 55.000 15.94 0.00 38.63 4.02
3281 3797 0.671781 GGCTCACAGTGTAGCAGGTG 60.672 60.000 20.06 0.00 40.61 4.00
3282 3798 1.674057 GGCTCACAGTGTAGCAGGT 59.326 57.895 20.06 0.00 40.61 4.00
3283 3799 1.078848 GGGCTCACAGTGTAGCAGG 60.079 63.158 20.06 0.28 40.61 4.85
3284 3800 1.078848 GGGGCTCACAGTGTAGCAG 60.079 63.158 20.06 8.65 40.61 4.24
3285 3801 1.127567 AAGGGGCTCACAGTGTAGCA 61.128 55.000 20.06 0.00 40.61 3.49
3286 3802 0.036875 AAAGGGGCTCACAGTGTAGC 59.963 55.000 13.63 13.63 38.03 3.58
3287 3803 1.625818 AGAAAGGGGCTCACAGTGTAG 59.374 52.381 0.00 0.00 0.00 2.74
3288 3804 1.623811 GAGAAAGGGGCTCACAGTGTA 59.376 52.381 0.00 0.00 32.67 2.90
3289 3805 0.398318 GAGAAAGGGGCTCACAGTGT 59.602 55.000 0.00 0.00 32.67 3.55
3290 3806 0.322008 GGAGAAAGGGGCTCACAGTG 60.322 60.000 0.00 0.00 34.07 3.66
3291 3807 0.474660 AGGAGAAAGGGGCTCACAGT 60.475 55.000 0.00 0.00 34.07 3.55
3292 3808 0.695347 AAGGAGAAAGGGGCTCACAG 59.305 55.000 0.00 0.00 34.07 3.66
3352 3868 8.161699 TGACTTACTTTCCTTTCACCATTTAC 57.838 34.615 0.00 0.00 0.00 2.01
3404 3920 2.760634 TGAAACCGCAAGCTGATAGA 57.239 45.000 0.00 0.00 0.00 1.98
3417 3933 3.181397 CATTCCGCAATGTCATGAAACC 58.819 45.455 0.00 0.00 35.53 3.27
3427 3945 2.292267 AGAGCTAACCATTCCGCAATG 58.708 47.619 0.00 0.00 39.45 2.82
3482 4000 7.358066 CAATTTGCATACTATGGAGCTAACTG 58.642 38.462 0.00 0.00 0.00 3.16
3483 4001 6.488006 CCAATTTGCATACTATGGAGCTAACT 59.512 38.462 0.00 0.00 0.00 2.24
3484 4002 6.672147 CCAATTTGCATACTATGGAGCTAAC 58.328 40.000 0.00 0.00 0.00 2.34
3511 4029 5.365619 TGTACCAAGTCAAAAAGAGGAGAC 58.634 41.667 0.00 0.00 0.00 3.36
3615 4133 6.481434 AGTCCTACACAAGTAAGAAACAGT 57.519 37.500 0.00 0.00 0.00 3.55
3760 4278 6.093357 GGTAGGTCGTGATATAGTAGGCTTAC 59.907 46.154 0.00 0.00 0.00 2.34
3778 4296 8.677148 TTAATCTAATTGAAGCATGGTAGGTC 57.323 34.615 0.00 0.00 0.00 3.85
3975 4493 4.020218 ACTCTAGCCAACACTTTCATGCTA 60.020 41.667 0.00 0.00 0.00 3.49
4062 4580 3.070018 GGTATTCGATCAGGCCATTCTG 58.930 50.000 5.01 0.00 36.17 3.02
4292 4810 3.248602 GCTTTTGCGTTTTCTCAGAGAGA 59.751 43.478 0.00 0.00 34.36 3.10
4293 4811 3.549574 GCTTTTGCGTTTTCTCAGAGAG 58.450 45.455 0.00 0.00 34.86 3.20
4294 4812 3.609103 GCTTTTGCGTTTTCTCAGAGA 57.391 42.857 0.00 0.00 34.86 3.10
4321 4839 5.163416 TGGTCTTCTCTATCAATGCATCGAA 60.163 40.000 0.00 0.00 0.00 3.71
4338 4856 7.559590 AGTCTTATGCATGTATTTGGTCTTC 57.440 36.000 10.16 0.00 0.00 2.87
4340 4858 7.220030 CCTAGTCTTATGCATGTATTTGGTCT 58.780 38.462 10.16 0.00 0.00 3.85
4376 4901 1.213537 CTTGTTGATGGGGCGCTTG 59.786 57.895 7.64 0.00 0.00 4.01
4482 5007 7.047891 TCTCACCCATTAACACTGATAATGAC 58.952 38.462 16.72 0.00 41.25 3.06
4545 5070 6.251376 GCAATGTTCAGAACCGAAATGATAAC 59.749 38.462 10.93 0.00 0.00 1.89
4854 5404 1.361668 CGGGAGAGTCCATTGTTGCG 61.362 60.000 0.00 0.00 38.64 4.85
5403 7880 6.851222 AAGAACAACAATCTAGTCTGTGTG 57.149 37.500 1.09 4.79 0.00 3.82
5630 8193 1.399572 CGACGCTGAGAATACGATGG 58.600 55.000 0.00 0.00 0.00 3.51
5635 8198 1.201343 GAAGGCGACGCTGAGAATAC 58.799 55.000 20.77 0.00 0.00 1.89
5724 8287 3.819368 TGATTTCAGACTCAAGCCACAA 58.181 40.909 0.00 0.00 0.00 3.33
5825 8388 4.978099 TCTCAAATTCTGTCTTTGCTCCT 58.022 39.130 0.00 0.00 34.36 3.69
5831 8394 7.254932 CCGAGTTTCTTCTCAAATTCTGTCTTT 60.255 37.037 0.00 0.00 34.46 2.52
5976 8539 4.352595 TCAATAAGGAAAGGACCCTGTCAA 59.647 41.667 8.41 0.00 33.68 3.18
6013 8576 9.136323 ACAAATTGGAGTAATGTTCTTCTCTTT 57.864 29.630 0.00 0.00 0.00 2.52
6014 8577 8.571336 CACAAATTGGAGTAATGTTCTTCTCTT 58.429 33.333 0.00 0.00 0.00 2.85
6216 8786 7.878477 TGTGAAAAACAACTATAGTACCTCG 57.122 36.000 5.65 0.00 35.24 4.63
6312 8882 4.155826 CGCAGTTGATAAGAACATTTCCCA 59.844 41.667 0.00 0.00 0.00 4.37
6346 8916 5.072741 AGCCACTTGTTCATAGTGAAACAT 58.927 37.500 4.66 0.00 44.52 2.71
6367 8937 4.662145 ACTTATGAATAGTGCGCAAAAGC 58.338 39.130 14.00 0.00 37.71 3.51
6368 8938 6.546395 AGAACTTATGAATAGTGCGCAAAAG 58.454 36.000 14.00 8.38 0.00 2.27
6369 8939 6.148645 TGAGAACTTATGAATAGTGCGCAAAA 59.851 34.615 14.00 2.74 29.40 2.44
6422 9055 2.289506 GGAGGGAGTATAATGGAACGGC 60.290 54.545 0.00 0.00 0.00 5.68
6481 9114 7.742556 ACACTATATAGTACTTCCTCCGTTC 57.257 40.000 15.03 0.00 34.13 3.95
6501 9134 9.975218 ATGAATGTTCCTAATTTAACCTACACT 57.025 29.630 0.00 0.00 0.00 3.55
6511 9144 9.710900 GTTCCAAGAAATGAATGTTCCTAATTT 57.289 29.630 0.00 0.00 0.00 1.82
6512 9145 8.028938 CGTTCCAAGAAATGAATGTTCCTAATT 58.971 33.333 0.00 0.00 0.00 1.40
6513 9146 7.362920 CCGTTCCAAGAAATGAATGTTCCTAAT 60.363 37.037 0.00 0.00 0.00 1.73
6514 9147 6.072175 CCGTTCCAAGAAATGAATGTTCCTAA 60.072 38.462 0.00 0.00 0.00 2.69
6515 9148 5.414454 CCGTTCCAAGAAATGAATGTTCCTA 59.586 40.000 0.00 0.00 0.00 2.94
6516 9149 4.218417 CCGTTCCAAGAAATGAATGTTCCT 59.782 41.667 0.00 0.00 0.00 3.36
6517 9150 4.217550 TCCGTTCCAAGAAATGAATGTTCC 59.782 41.667 0.00 0.00 0.00 3.62
6518 9151 5.371115 TCCGTTCCAAGAAATGAATGTTC 57.629 39.130 0.00 0.00 0.00 3.18
6519 9152 4.218417 CCTCCGTTCCAAGAAATGAATGTT 59.782 41.667 0.00 0.00 0.00 2.71
6520 9153 3.758554 CCTCCGTTCCAAGAAATGAATGT 59.241 43.478 0.00 0.00 0.00 2.71
6521 9154 4.009675 TCCTCCGTTCCAAGAAATGAATG 58.990 43.478 0.00 0.00 0.00 2.67
6522 9155 4.301072 TCCTCCGTTCCAAGAAATGAAT 57.699 40.909 0.00 0.00 0.00 2.57
6523 9156 3.780804 TCCTCCGTTCCAAGAAATGAA 57.219 42.857 0.00 0.00 0.00 2.57
6524 9157 3.072476 ACTTCCTCCGTTCCAAGAAATGA 59.928 43.478 0.00 0.00 0.00 2.57
6525 9158 3.412386 ACTTCCTCCGTTCCAAGAAATG 58.588 45.455 0.00 0.00 0.00 2.32
6526 9159 3.790089 ACTTCCTCCGTTCCAAGAAAT 57.210 42.857 0.00 0.00 0.00 2.17
6527 9160 3.644738 AGTACTTCCTCCGTTCCAAGAAA 59.355 43.478 0.00 0.00 0.00 2.52
6528 9161 3.236896 AGTACTTCCTCCGTTCCAAGAA 58.763 45.455 0.00 0.00 0.00 2.52
6529 9162 2.885616 AGTACTTCCTCCGTTCCAAGA 58.114 47.619 0.00 0.00 0.00 3.02
6530 9163 6.651975 ATATAGTACTTCCTCCGTTCCAAG 57.348 41.667 0.00 0.00 0.00 3.61
6531 9164 7.230108 CACTATATAGTACTTCCTCCGTTCCAA 59.770 40.741 15.03 0.00 34.13 3.53
6532 9165 6.713903 CACTATATAGTACTTCCTCCGTTCCA 59.286 42.308 15.03 0.00 34.13 3.53
6533 9166 6.714356 ACACTATATAGTACTTCCTCCGTTCC 59.286 42.308 15.03 0.00 34.13 3.62
6534 9167 7.742556 ACACTATATAGTACTTCCTCCGTTC 57.257 40.000 15.03 0.00 34.13 3.95
6535 9168 7.882271 CCTACACTATATAGTACTTCCTCCGTT 59.118 40.741 15.03 0.00 34.13 4.44
6536 9169 7.017056 ACCTACACTATATAGTACTTCCTCCGT 59.983 40.741 15.03 8.21 34.13 4.69
6537 9170 7.393216 ACCTACACTATATAGTACTTCCTCCG 58.607 42.308 15.03 2.73 34.13 4.63
6554 9187 9.975218 ATGAATGTTCCTAATTTAACCTACACT 57.025 29.630 0.00 0.00 0.00 3.55
6564 9197 9.710900 GTTCCAAGAAATGAATGTTCCTAATTT 57.289 29.630 0.00 0.00 0.00 1.82
6565 9198 8.028938 CGTTCCAAGAAATGAATGTTCCTAATT 58.971 33.333 0.00 0.00 0.00 1.40
6566 9199 7.362920 CCGTTCCAAGAAATGAATGTTCCTAAT 60.363 37.037 0.00 0.00 0.00 1.73
6567 9200 6.072175 CCGTTCCAAGAAATGAATGTTCCTAA 60.072 38.462 0.00 0.00 0.00 2.69
6568 9201 5.414454 CCGTTCCAAGAAATGAATGTTCCTA 59.586 40.000 0.00 0.00 0.00 2.94
6569 9202 4.218417 CCGTTCCAAGAAATGAATGTTCCT 59.782 41.667 0.00 0.00 0.00 3.36
6570 9203 4.217550 TCCGTTCCAAGAAATGAATGTTCC 59.782 41.667 0.00 0.00 0.00 3.62
6571 9204 5.371115 TCCGTTCCAAGAAATGAATGTTC 57.629 39.130 0.00 0.00 0.00 3.18
6572 9205 4.218417 CCTCCGTTCCAAGAAATGAATGTT 59.782 41.667 0.00 0.00 0.00 2.71
6573 9206 3.758554 CCTCCGTTCCAAGAAATGAATGT 59.241 43.478 0.00 0.00 0.00 2.71
6574 9207 4.009675 TCCTCCGTTCCAAGAAATGAATG 58.990 43.478 0.00 0.00 0.00 2.67
6575 9208 4.301072 TCCTCCGTTCCAAGAAATGAAT 57.699 40.909 0.00 0.00 0.00 2.57
6576 9209 3.780804 TCCTCCGTTCCAAGAAATGAA 57.219 42.857 0.00 0.00 0.00 2.57
6577 9210 3.072476 ACTTCCTCCGTTCCAAGAAATGA 59.928 43.478 0.00 0.00 0.00 2.57
6578 9211 3.412386 ACTTCCTCCGTTCCAAGAAATG 58.588 45.455 0.00 0.00 0.00 2.32
6579 9212 3.790089 ACTTCCTCCGTTCCAAGAAAT 57.210 42.857 0.00 0.00 0.00 2.17
6580 9213 3.644738 AGTACTTCCTCCGTTCCAAGAAA 59.355 43.478 0.00 0.00 0.00 2.52
6581 9214 3.236896 AGTACTTCCTCCGTTCCAAGAA 58.763 45.455 0.00 0.00 0.00 2.52
6582 9215 2.885616 AGTACTTCCTCCGTTCCAAGA 58.114 47.619 0.00 0.00 0.00 3.02
6583 9216 6.651975 ATATAGTACTTCCTCCGTTCCAAG 57.348 41.667 0.00 0.00 0.00 3.61
6584 9217 7.230108 CACTATATAGTACTTCCTCCGTTCCAA 59.770 40.741 15.03 0.00 34.13 3.53
6585 9218 6.713903 CACTATATAGTACTTCCTCCGTTCCA 59.286 42.308 15.03 0.00 34.13 3.53
6586 9219 6.714356 ACACTATATAGTACTTCCTCCGTTCC 59.286 42.308 15.03 0.00 34.13 3.62
6587 9220 7.742556 ACACTATATAGTACTTCCTCCGTTC 57.257 40.000 15.03 0.00 34.13 3.95
6588 9221 7.882271 CCTACACTATATAGTACTTCCTCCGTT 59.118 40.741 15.03 0.00 34.13 4.44
6589 9222 7.017056 ACCTACACTATATAGTACTTCCTCCGT 59.983 40.741 15.03 8.21 34.13 4.69
6590 9223 7.393216 ACCTACACTATATAGTACTTCCTCCG 58.607 42.308 15.03 2.73 34.13 4.63
6645 9278 7.782897 AGGGATATAAAGATCTCATCGAACA 57.217 36.000 0.00 0.00 0.00 3.18
6652 9285 6.100279 AGCACACAAGGGATATAAAGATCTCA 59.900 38.462 0.00 0.00 0.00 3.27
6653 9286 6.529220 AGCACACAAGGGATATAAAGATCTC 58.471 40.000 0.00 0.00 0.00 2.75
6690 9323 6.599244 TGCGAAGAACCATCTGATCTAAAAAT 59.401 34.615 0.00 0.00 35.59 1.82
6693 9326 5.084818 TGCGAAGAACCATCTGATCTAAA 57.915 39.130 0.00 0.00 35.59 1.85
6694 9327 4.160439 ACTGCGAAGAACCATCTGATCTAA 59.840 41.667 0.00 0.00 35.59 2.10
6695 9328 3.701542 ACTGCGAAGAACCATCTGATCTA 59.298 43.478 0.00 0.00 35.59 1.98
6702 9335 1.795768 TGTCACTGCGAAGAACCATC 58.204 50.000 0.00 0.00 0.00 3.51
6712 9345 4.352039 ACGACTATTTCTATGTCACTGCG 58.648 43.478 0.00 0.00 0.00 5.18
6721 9354 7.419711 TCTTTTCCCAGACGACTATTTCTAT 57.580 36.000 0.00 0.00 0.00 1.98
6743 9376 8.419076 AAACACGCTTGAAAACAAAAATATCT 57.581 26.923 0.00 0.00 0.00 1.98
6744 9377 9.562752 GTAAACACGCTTGAAAACAAAAATATC 57.437 29.630 0.00 0.00 0.00 1.63
6818 9456 2.744202 CAGTTTGGTCTTCTCCATTCCG 59.256 50.000 0.00 0.00 37.33 4.30
6908 9549 7.999450 ATGGTGGAATTTTGCATACATTTTT 57.001 28.000 0.00 0.00 29.62 1.94
6909 9550 8.320617 AGTATGGTGGAATTTTGCATACATTTT 58.679 29.630 0.00 0.02 33.55 1.82
6910 9551 7.850193 AGTATGGTGGAATTTTGCATACATTT 58.150 30.769 0.00 0.26 33.55 2.32
6911 9552 7.123997 TGAGTATGGTGGAATTTTGCATACATT 59.876 33.333 0.00 0.00 33.55 2.71
6912 9553 6.606796 TGAGTATGGTGGAATTTTGCATACAT 59.393 34.615 0.00 8.92 34.91 2.29
6913 9554 5.948758 TGAGTATGGTGGAATTTTGCATACA 59.051 36.000 0.00 0.00 0.00 2.29
6914 9555 6.449635 TGAGTATGGTGGAATTTTGCATAC 57.550 37.500 0.00 0.00 0.00 2.39
6915 9556 7.998383 AGTATGAGTATGGTGGAATTTTGCATA 59.002 33.333 0.00 0.00 0.00 3.14
6916 9557 6.835488 AGTATGAGTATGGTGGAATTTTGCAT 59.165 34.615 0.00 0.00 0.00 3.96
6917 9558 6.186957 AGTATGAGTATGGTGGAATTTTGCA 58.813 36.000 0.00 0.00 0.00 4.08
6918 9559 6.699575 AGTATGAGTATGGTGGAATTTTGC 57.300 37.500 0.00 0.00 0.00 3.68
6946 9587 6.687081 ATGAAGTACGGTTTCTCACAAAAA 57.313 33.333 0.00 0.00 0.00 1.94
6947 9588 6.987992 AGTATGAAGTACGGTTTCTCACAAAA 59.012 34.615 0.00 0.00 38.38 2.44
6948 9589 6.518493 AGTATGAAGTACGGTTTCTCACAAA 58.482 36.000 0.00 0.00 38.38 2.83
6949 9590 6.092955 AGTATGAAGTACGGTTTCTCACAA 57.907 37.500 0.00 0.00 38.38 3.33
6950 9591 5.242171 TGAGTATGAAGTACGGTTTCTCACA 59.758 40.000 0.00 0.00 38.38 3.58
6951 9592 5.706916 TGAGTATGAAGTACGGTTTCTCAC 58.293 41.667 0.00 0.00 38.38 3.51
6952 9593 5.970317 TGAGTATGAAGTACGGTTTCTCA 57.030 39.130 0.00 0.00 38.38 3.27
6953 9594 7.140048 CCTATGAGTATGAAGTACGGTTTCTC 58.860 42.308 0.00 0.00 38.38 2.87
6954 9595 6.040616 CCCTATGAGTATGAAGTACGGTTTCT 59.959 42.308 0.00 0.00 38.38 2.52
6955 9596 6.040166 TCCCTATGAGTATGAAGTACGGTTTC 59.960 42.308 0.00 0.00 38.38 2.78
6956 9597 5.895534 TCCCTATGAGTATGAAGTACGGTTT 59.104 40.000 0.00 0.00 38.38 3.27
6957 9598 5.301298 GTCCCTATGAGTATGAAGTACGGTT 59.699 44.000 0.00 0.00 38.38 4.44
6958 9599 4.826183 GTCCCTATGAGTATGAAGTACGGT 59.174 45.833 0.00 0.00 38.38 4.83
6959 9600 5.071370 AGTCCCTATGAGTATGAAGTACGG 58.929 45.833 0.00 0.00 38.38 4.02
6960 9601 6.935771 ACTAGTCCCTATGAGTATGAAGTACG 59.064 42.308 0.00 0.00 38.38 3.67
6961 9602 8.694581 AACTAGTCCCTATGAGTATGAAGTAC 57.305 38.462 0.00 0.00 0.00 2.73
6965 9606 7.618117 TCACAAACTAGTCCCTATGAGTATGAA 59.382 37.037 0.00 0.00 0.00 2.57
6970 9611 6.681729 TTTCACAAACTAGTCCCTATGAGT 57.318 37.500 0.00 0.00 0.00 3.41
7013 9658 4.907809 CATGAAGATGCAGGGATCTATGT 58.092 43.478 3.64 0.00 32.11 2.29
7155 10544 3.525545 GAGGACCGCCGGAGTACC 61.526 72.222 11.71 7.81 39.96 3.34
7156 10545 3.885521 CGAGGACCGCCGGAGTAC 61.886 72.222 11.71 1.32 39.96 2.73
7157 10546 4.100084 TCGAGGACCGCCGGAGTA 62.100 66.667 11.71 0.00 39.96 2.59
7226 10624 1.698532 CATGGAGATGGGGGAGAAGAG 59.301 57.143 0.00 0.00 0.00 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.