Multiple sequence alignment - TraesCS5D01G071600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G071600 chr5D 100.000 2448 0 0 1 2448 69506012 69503565 0.000000e+00 4521.0
1 TraesCS5D01G071600 chr5D 89.501 962 56 16 1148 2088 70402927 70401990 0.000000e+00 1175.0
2 TraesCS5D01G071600 chr5D 94.521 73 2 2 285 357 69505629 69505559 8.160000e-21 111.0
3 TraesCS5D01G071600 chr5D 94.521 73 2 2 384 454 69505728 69505656 8.160000e-21 111.0
4 TraesCS5D01G071600 chr5D 100.000 28 0 0 2760 2787 69503253 69503226 5.000000e-03 52.8
5 TraesCS5D01G071600 chr5A 91.816 782 58 5 1145 1924 60251062 60250285 0.000000e+00 1085.0
6 TraesCS5D01G071600 chr5A 90.503 537 33 5 1915 2448 60250242 60249721 0.000000e+00 693.0
7 TraesCS5D01G071600 chr5A 86.667 135 10 2 31 157 562491752 562491886 2.890000e-30 143.0
8 TraesCS5D01G071600 chr5A 97.222 36 1 0 662 697 38032939 38032974 8.330000e-06 62.1
9 TraesCS5D01G071600 chr5B 93.322 599 27 8 1234 1822 75332249 75331654 0.000000e+00 872.0
10 TraesCS5D01G071600 chr5B 90.769 585 30 9 1813 2374 75731123 75730540 0.000000e+00 760.0
11 TraesCS5D01G071600 chr5B 88.100 521 39 5 1849 2346 75325806 75325286 5.140000e-167 597.0
12 TraesCS5D01G071600 chr5B 87.393 468 42 8 1145 1604 75737039 75736581 3.180000e-144 521.0
13 TraesCS5D01G071600 chr5B 92.334 287 16 4 4 288 637390710 637390428 1.200000e-108 403.0
14 TraesCS5D01G071600 chr5B 96.250 80 3 0 2369 2448 75721833 75721754 6.260000e-27 132.0
15 TraesCS5D01G071600 chr5B 86.869 99 4 5 793 887 75332557 75332464 4.910000e-18 102.0
16 TraesCS5D01G071600 chr5B 100.000 28 0 0 2760 2787 75721670 75721643 5.000000e-03 52.8
17 TraesCS5D01G071600 chr1B 93.031 287 14 4 4 288 651521906 651521624 5.550000e-112 414.0
18 TraesCS5D01G071600 chr1B 92.414 290 16 4 1 288 687255730 687256015 2.580000e-110 409.0
19 TraesCS5D01G071600 chr1B 96.610 59 2 0 641 699 651521359 651521301 6.350000e-17 99.0
20 TraesCS5D01G071600 chr2B 89.540 239 18 5 52 288 134424343 134424576 2.100000e-76 296.0
21 TraesCS5D01G071600 chr2B 96.970 66 2 0 1 66 134424262 134424327 8.160000e-21 111.0
22 TraesCS5D01G071600 chr2B 97.778 45 1 0 658 702 794384960 794384916 8.280000e-11 78.7
23 TraesCS5D01G071600 chr2D 90.909 165 7 1 1 157 242903049 242902885 6.050000e-52 215.0
24 TraesCS5D01G071600 chr2D 91.176 68 4 2 634 699 642010338 642010271 1.060000e-14 91.6
25 TraesCS5D01G071600 chr1A 86.667 135 10 2 31 157 513740886 513740752 2.890000e-30 143.0
26 TraesCS5D01G071600 chr3D 85.294 136 17 2 370 505 552445804 552445936 1.350000e-28 137.0
27 TraesCS5D01G071600 chr3D 84.559 136 15 4 370 505 552445732 552445603 2.250000e-26 130.0
28 TraesCS5D01G071600 chr3D 91.667 48 3 1 285 331 552445718 552445671 6.440000e-07 65.8
29 TraesCS5D01G071600 chr6B 83.212 137 19 3 370 505 129486956 129487089 3.770000e-24 122.0
30 TraesCS5D01G071600 chr6B 100.000 44 0 0 370 413 129475786 129475743 6.400000e-12 82.4
31 TraesCS5D01G071600 chr6B 89.796 49 4 1 285 332 129486970 129487018 8.330000e-06 62.1
32 TraesCS5D01G071600 chr6B 100.000 30 0 0 285 314 129475772 129475743 3.880000e-04 56.5
33 TraesCS5D01G071600 chr2A 85.938 64 8 1 638 700 604981588 604981651 1.790000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G071600 chr5D 69503226 69506012 2786 True 1198.95 4521 97.2605 1 2787 4 chr5D.!!$R2 2786
1 TraesCS5D01G071600 chr5D 70401990 70402927 937 True 1175.00 1175 89.5010 1148 2088 1 chr5D.!!$R1 940
2 TraesCS5D01G071600 chr5A 60249721 60251062 1341 True 889.00 1085 91.1595 1145 2448 2 chr5A.!!$R1 1303
3 TraesCS5D01G071600 chr5B 75730540 75731123 583 True 760.00 760 90.7690 1813 2374 1 chr5B.!!$R2 561
4 TraesCS5D01G071600 chr5B 75325286 75325806 520 True 597.00 597 88.1000 1849 2346 1 chr5B.!!$R1 497
5 TraesCS5D01G071600 chr5B 75331654 75332557 903 True 487.00 872 90.0955 793 1822 2 chr5B.!!$R5 1029
6 TraesCS5D01G071600 chr1B 651521301 651521906 605 True 256.50 414 94.8205 4 699 2 chr1B.!!$R1 695

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
611 726 0.039074 CTCGGCCGATATCCACTGAC 60.039 60.0 31.19 0.0 0.0 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2313 2546 0.329261 TGCCACATCCTCTTCCTTGG 59.671 55.0 0.0 0.0 0.0 3.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
102 103 9.944663 TTTTACTTTGAACTGTGTGATAATGAC 57.055 29.630 0.00 0.00 0.00 3.06
104 105 5.758296 ACTTTGAACTGTGTGATAATGACGT 59.242 36.000 0.00 0.00 0.00 4.34
108 109 4.251543 ACTGTGTGATAATGACGTGTCA 57.748 40.909 4.99 4.99 44.59 3.58
255 258 9.515020 TTTTTCTTTGTAAGCTCAACACTAATG 57.485 29.630 1.51 0.00 0.00 1.90
292 295 8.988064 GTATGAAAGTCTCAGACATTTACTCA 57.012 34.615 7.77 0.00 44.27 3.41
295 298 8.908786 TGAAAGTCTCAGACATTTACTCATTT 57.091 30.769 7.77 0.00 34.60 2.32
296 299 9.996554 TGAAAGTCTCAGACATTTACTCATTTA 57.003 29.630 7.77 0.00 34.60 1.40
300 303 9.814899 AGTCTCAGACATTTACTCATTTAGATG 57.185 33.333 7.77 0.00 34.60 2.90
301 304 9.593134 GTCTCAGACATTTACTCATTTAGATGT 57.407 33.333 0.00 0.00 31.25 3.06
328 439 4.657436 TTGTTGGACACAATTTGTACCC 57.343 40.909 16.82 13.90 40.71 3.69
330 441 4.282496 TGTTGGACACAATTTGTACCCTT 58.718 39.130 16.82 0.00 38.48 3.95
333 444 5.269505 TGGACACAATTTGTACCCTTTTG 57.730 39.130 16.82 1.67 38.48 2.44
334 445 4.956700 TGGACACAATTTGTACCCTTTTGA 59.043 37.500 16.82 1.65 38.48 2.69
335 446 5.163499 TGGACACAATTTGTACCCTTTTGAC 60.163 40.000 16.82 0.23 38.48 3.18
336 447 5.163499 GGACACAATTTGTACCCTTTTGACA 60.163 40.000 0.86 0.00 39.17 3.58
337 448 5.901552 ACACAATTTGTACCCTTTTGACAG 58.098 37.500 0.86 0.00 36.32 3.51
338 449 5.654650 ACACAATTTGTACCCTTTTGACAGA 59.345 36.000 0.86 0.00 36.32 3.41
339 450 6.153680 ACACAATTTGTACCCTTTTGACAGAA 59.846 34.615 0.86 0.00 36.32 3.02
340 451 7.038659 CACAATTTGTACCCTTTTGACAGAAA 58.961 34.615 0.86 0.00 0.00 2.52
342 453 8.097662 ACAATTTGTACCCTTTTGACAGAAAAA 58.902 29.630 0.00 0.00 0.00 1.94
360 471 3.830744 AAAAAGTGTTAGGCAAACCCC 57.169 42.857 0.00 0.00 37.27 4.95
361 472 2.767644 AAAGTGTTAGGCAAACCCCT 57.232 45.000 0.00 0.00 37.27 4.79
362 473 3.887916 AAAGTGTTAGGCAAACCCCTA 57.112 42.857 0.00 0.00 37.27 3.53
364 475 3.434940 AGTGTTAGGCAAACCCCTAAG 57.565 47.619 1.12 0.00 45.52 2.18
366 477 3.396611 AGTGTTAGGCAAACCCCTAAGAA 59.603 43.478 1.12 0.00 45.52 2.52
367 478 4.141111 AGTGTTAGGCAAACCCCTAAGAAA 60.141 41.667 1.12 0.00 45.52 2.52
368 479 4.217767 GTGTTAGGCAAACCCCTAAGAAAG 59.782 45.833 1.12 0.00 45.52 2.62
369 480 4.141111 TGTTAGGCAAACCCCTAAGAAAGT 60.141 41.667 1.12 0.00 45.52 2.66
371 482 4.948062 AGGCAAACCCCTAAGAAAGTAT 57.052 40.909 0.00 0.00 36.11 2.12
372 483 5.270979 AGGCAAACCCCTAAGAAAGTATT 57.729 39.130 0.00 0.00 36.11 1.89
373 484 5.651303 AGGCAAACCCCTAAGAAAGTATTT 58.349 37.500 0.00 0.00 37.69 1.40
374 485 6.082031 AGGCAAACCCCTAAGAAAGTATTTT 58.918 36.000 0.00 0.00 35.40 1.82
375 486 6.014584 AGGCAAACCCCTAAGAAAGTATTTTG 60.015 38.462 0.00 0.00 35.40 2.44
376 487 5.637810 GCAAACCCCTAAGAAAGTATTTTGC 59.362 40.000 0.00 0.00 39.27 3.68
377 488 5.995565 AACCCCTAAGAAAGTATTTTGCC 57.004 39.130 0.00 0.00 39.27 4.52
378 489 5.005628 ACCCCTAAGAAAGTATTTTGCCA 57.994 39.130 0.00 0.00 39.27 4.92
379 490 4.770531 ACCCCTAAGAAAGTATTTTGCCAC 59.229 41.667 0.00 0.00 39.27 5.01
381 496 6.184789 CCCCTAAGAAAGTATTTTGCCACTA 58.815 40.000 0.00 0.00 39.27 2.74
383 498 7.996644 CCCCTAAGAAAGTATTTTGCCACTATA 59.003 37.037 0.00 0.00 39.27 1.31
427 542 7.820044 TTTTTGTTGGACACAATTTGTACTC 57.180 32.000 0.86 0.26 45.17 2.59
428 543 6.767524 TTTGTTGGACACAATTTGTACTCT 57.232 33.333 0.86 0.00 45.17 3.24
429 544 6.767524 TTGTTGGACACAATTTGTACTCTT 57.232 33.333 0.86 0.00 40.71 2.85
430 545 6.371809 TGTTGGACACAATTTGTACTCTTC 57.628 37.500 0.86 0.00 40.23 2.87
431 546 6.119536 TGTTGGACACAATTTGTACTCTTCT 58.880 36.000 0.86 0.00 40.23 2.85
432 547 6.038161 TGTTGGACACAATTTGTACTCTTCTG 59.962 38.462 0.86 0.00 40.23 3.02
433 548 5.924356 TGGACACAATTTGTACTCTTCTGA 58.076 37.500 0.86 0.00 40.23 3.27
434 549 6.353323 TGGACACAATTTGTACTCTTCTGAA 58.647 36.000 0.86 0.00 40.23 3.02
435 550 6.826231 TGGACACAATTTGTACTCTTCTGAAA 59.174 34.615 0.86 0.00 40.23 2.69
436 551 7.338196 TGGACACAATTTGTACTCTTCTGAAAA 59.662 33.333 0.86 0.00 40.23 2.29
437 552 8.188139 GGACACAATTTGTACTCTTCTGAAAAA 58.812 33.333 0.86 0.00 39.17 1.94
461 576 7.780008 AAAAAGTGTTAGGCAAAATACCAAC 57.220 32.000 0.00 0.00 0.00 3.77
462 577 6.724893 AAAGTGTTAGGCAAAATACCAACT 57.275 33.333 0.00 0.00 0.00 3.16
463 578 5.959618 AGTGTTAGGCAAAATACCAACTC 57.040 39.130 0.00 0.00 0.00 3.01
464 579 5.381757 AGTGTTAGGCAAAATACCAACTCA 58.618 37.500 0.00 0.00 0.00 3.41
465 580 5.473504 AGTGTTAGGCAAAATACCAACTCAG 59.526 40.000 0.00 0.00 0.00 3.35
466 581 4.217550 TGTTAGGCAAAATACCAACTCAGC 59.782 41.667 0.00 0.00 0.00 4.26
467 582 1.812571 AGGCAAAATACCAACTCAGCG 59.187 47.619 0.00 0.00 0.00 5.18
468 583 1.539827 GGCAAAATACCAACTCAGCGT 59.460 47.619 0.00 0.00 0.00 5.07
469 584 2.745281 GGCAAAATACCAACTCAGCGTA 59.255 45.455 0.00 0.00 0.00 4.42
470 585 3.425758 GGCAAAATACCAACTCAGCGTAC 60.426 47.826 0.00 0.00 0.00 3.67
471 586 3.723835 GCAAAATACCAACTCAGCGTACG 60.724 47.826 11.84 11.84 0.00 3.67
472 587 3.581024 AAATACCAACTCAGCGTACGA 57.419 42.857 21.65 0.00 0.00 3.43
473 588 3.581024 AATACCAACTCAGCGTACGAA 57.419 42.857 21.65 2.09 0.00 3.85
474 589 3.581024 ATACCAACTCAGCGTACGAAA 57.419 42.857 21.65 1.69 0.00 3.46
475 590 1.494824 ACCAACTCAGCGTACGAAAC 58.505 50.000 21.65 0.54 0.00 2.78
476 591 0.788391 CCAACTCAGCGTACGAAACC 59.212 55.000 21.65 0.11 0.00 3.27
477 592 1.604693 CCAACTCAGCGTACGAAACCT 60.605 52.381 21.65 2.97 0.00 3.50
478 593 1.455786 CAACTCAGCGTACGAAACCTG 59.544 52.381 21.65 16.27 0.00 4.00
479 594 0.956633 ACTCAGCGTACGAAACCTGA 59.043 50.000 21.65 19.52 35.45 3.86
480 595 1.338973 ACTCAGCGTACGAAACCTGAA 59.661 47.619 21.65 6.12 35.97 3.02
481 596 2.223876 ACTCAGCGTACGAAACCTGAAA 60.224 45.455 21.65 0.95 35.97 2.69
482 597 2.798283 CTCAGCGTACGAAACCTGAAAA 59.202 45.455 21.65 0.25 35.97 2.29
483 598 3.196463 TCAGCGTACGAAACCTGAAAAA 58.804 40.909 21.65 0.00 34.47 1.94
484 599 3.810941 TCAGCGTACGAAACCTGAAAAAT 59.189 39.130 21.65 0.00 34.47 1.82
485 600 4.989797 TCAGCGTACGAAACCTGAAAAATA 59.010 37.500 21.65 0.00 34.47 1.40
486 601 5.466058 TCAGCGTACGAAACCTGAAAAATAA 59.534 36.000 21.65 0.00 34.47 1.40
487 602 6.148150 TCAGCGTACGAAACCTGAAAAATAAT 59.852 34.615 21.65 0.00 34.47 1.28
488 603 7.331440 TCAGCGTACGAAACCTGAAAAATAATA 59.669 33.333 21.65 0.00 34.47 0.98
489 604 7.958567 CAGCGTACGAAACCTGAAAAATAATAA 59.041 33.333 21.65 0.00 31.61 1.40
490 605 8.505625 AGCGTACGAAACCTGAAAAATAATAAA 58.494 29.630 21.65 0.00 0.00 1.40
491 606 8.569683 GCGTACGAAACCTGAAAAATAATAAAC 58.430 33.333 21.65 0.00 0.00 2.01
492 607 9.815936 CGTACGAAACCTGAAAAATAATAAACT 57.184 29.630 10.44 0.00 0.00 2.66
495 610 9.893305 ACGAAACCTGAAAAATAATAAACTCAG 57.107 29.630 0.00 0.00 0.00 3.35
496 611 8.850452 CGAAACCTGAAAAATAATAAACTCAGC 58.150 33.333 0.00 0.00 31.06 4.26
497 612 8.742554 AAACCTGAAAAATAATAAACTCAGCG 57.257 30.769 0.00 0.00 31.06 5.18
498 613 7.448748 ACCTGAAAAATAATAAACTCAGCGT 57.551 32.000 0.00 0.00 31.06 5.07
499 614 8.556213 ACCTGAAAAATAATAAACTCAGCGTA 57.444 30.769 0.00 0.00 31.06 4.42
500 615 9.174166 ACCTGAAAAATAATAAACTCAGCGTAT 57.826 29.630 0.00 0.00 31.06 3.06
501 616 9.438291 CCTGAAAAATAATAAACTCAGCGTATG 57.562 33.333 0.00 0.00 31.06 2.39
509 624 7.672983 AATAAACTCAGCGTATGAATATGGG 57.327 36.000 0.00 0.00 37.52 4.00
510 625 3.045601 ACTCAGCGTATGAATATGGGC 57.954 47.619 0.00 0.00 37.52 5.36
511 626 2.368548 ACTCAGCGTATGAATATGGGCA 59.631 45.455 0.00 0.00 37.52 5.36
512 627 2.738846 CTCAGCGTATGAATATGGGCAC 59.261 50.000 0.00 0.00 37.52 5.01
513 628 1.460743 CAGCGTATGAATATGGGCACG 59.539 52.381 0.00 0.00 0.00 5.34
514 629 1.343142 AGCGTATGAATATGGGCACGA 59.657 47.619 0.00 0.00 0.00 4.35
515 630 2.139917 GCGTATGAATATGGGCACGAA 58.860 47.619 0.00 0.00 0.00 3.85
516 631 2.096417 GCGTATGAATATGGGCACGAAC 60.096 50.000 0.00 0.00 0.00 3.95
517 632 2.478894 CGTATGAATATGGGCACGAACC 59.521 50.000 0.00 0.00 0.00 3.62
518 633 1.593196 ATGAATATGGGCACGAACCG 58.407 50.000 0.00 0.00 0.00 4.44
519 634 0.537653 TGAATATGGGCACGAACCGA 59.462 50.000 0.00 0.00 0.00 4.69
520 635 0.935196 GAATATGGGCACGAACCGAC 59.065 55.000 0.00 0.00 0.00 4.79
521 636 0.808453 AATATGGGCACGAACCGACG 60.808 55.000 0.00 0.00 39.31 5.12
522 637 1.669049 ATATGGGCACGAACCGACGA 61.669 55.000 0.00 0.00 37.03 4.20
523 638 2.274232 TATGGGCACGAACCGACGAG 62.274 60.000 0.00 0.00 37.03 4.18
524 639 4.047059 GGGCACGAACCGACGAGA 62.047 66.667 0.00 0.00 37.03 4.04
525 640 2.804090 GGCACGAACCGACGAGAC 60.804 66.667 0.00 0.00 37.03 3.36
526 641 2.804090 GCACGAACCGACGAGACC 60.804 66.667 0.00 0.00 37.03 3.85
527 642 2.640989 CACGAACCGACGAGACCA 59.359 61.111 0.00 0.00 37.03 4.02
528 643 1.008194 CACGAACCGACGAGACCAA 60.008 57.895 0.00 0.00 37.03 3.67
529 644 1.002250 CACGAACCGACGAGACCAAG 61.002 60.000 0.00 0.00 37.03 3.61
530 645 2.087009 CGAACCGACGAGACCAAGC 61.087 63.158 0.00 0.00 35.09 4.01
531 646 1.737008 GAACCGACGAGACCAAGCC 60.737 63.158 0.00 0.00 0.00 4.35
532 647 3.236003 AACCGACGAGACCAAGCCC 62.236 63.158 0.00 0.00 0.00 5.19
533 648 4.796231 CCGACGAGACCAAGCCCG 62.796 72.222 0.00 0.00 0.00 6.13
534 649 4.052229 CGACGAGACCAAGCCCGT 62.052 66.667 0.00 0.00 38.01 5.28
535 650 2.126031 GACGAGACCAAGCCCGTC 60.126 66.667 0.00 0.00 43.28 4.79
536 651 3.644399 GACGAGACCAAGCCCGTCC 62.644 68.421 0.00 0.00 43.71 4.79
537 652 3.382832 CGAGACCAAGCCCGTCCT 61.383 66.667 0.00 0.00 0.00 3.85
538 653 2.579738 GAGACCAAGCCCGTCCTC 59.420 66.667 0.00 0.00 0.00 3.71
539 654 3.003763 AGACCAAGCCCGTCCTCC 61.004 66.667 0.00 0.00 0.00 4.30
540 655 4.452733 GACCAAGCCCGTCCTCCG 62.453 72.222 0.00 0.00 0.00 4.63
553 668 4.183686 CTCCGCCGCATGCCAAAG 62.184 66.667 13.15 0.94 36.24 2.77
593 708 7.787725 AGTTTTTCGTCTGTCATAAAACTCT 57.212 32.000 0.00 0.00 42.27 3.24
594 709 7.852516 AGTTTTTCGTCTGTCATAAAACTCTC 58.147 34.615 0.00 0.00 42.27 3.20
595 710 6.448053 TTTTCGTCTGTCATAAAACTCTCG 57.552 37.500 0.00 0.00 0.00 4.04
596 711 4.092771 TCGTCTGTCATAAAACTCTCGG 57.907 45.455 0.00 0.00 0.00 4.63
597 712 2.599082 CGTCTGTCATAAAACTCTCGGC 59.401 50.000 0.00 0.00 0.00 5.54
598 713 2.930682 GTCTGTCATAAAACTCTCGGCC 59.069 50.000 0.00 0.00 0.00 6.13
599 714 1.927174 CTGTCATAAAACTCTCGGCCG 59.073 52.381 22.12 22.12 0.00 6.13
600 715 1.546923 TGTCATAAAACTCTCGGCCGA 59.453 47.619 29.03 29.03 0.00 5.54
601 716 2.167693 TGTCATAAAACTCTCGGCCGAT 59.832 45.455 31.19 15.72 0.00 4.18
602 717 3.382227 TGTCATAAAACTCTCGGCCGATA 59.618 43.478 31.19 21.62 0.00 2.92
603 718 4.038763 TGTCATAAAACTCTCGGCCGATAT 59.961 41.667 31.19 19.20 0.00 1.63
604 719 4.621886 GTCATAAAACTCTCGGCCGATATC 59.378 45.833 31.19 7.64 0.00 1.63
605 720 2.528041 AAAACTCTCGGCCGATATCC 57.472 50.000 31.19 0.00 0.00 2.59
606 721 1.410004 AAACTCTCGGCCGATATCCA 58.590 50.000 31.19 4.74 0.00 3.41
607 722 0.674534 AACTCTCGGCCGATATCCAC 59.325 55.000 31.19 0.00 0.00 4.02
608 723 0.178987 ACTCTCGGCCGATATCCACT 60.179 55.000 31.19 3.97 0.00 4.00
609 724 0.242286 CTCTCGGCCGATATCCACTG 59.758 60.000 31.19 14.70 0.00 3.66
610 725 0.179001 TCTCGGCCGATATCCACTGA 60.179 55.000 31.19 17.05 0.00 3.41
611 726 0.039074 CTCGGCCGATATCCACTGAC 60.039 60.000 31.19 0.00 0.00 3.51
612 727 0.467474 TCGGCCGATATCCACTGACT 60.467 55.000 27.28 0.00 0.00 3.41
613 728 0.039074 CGGCCGATATCCACTGACTC 60.039 60.000 24.07 0.00 0.00 3.36
614 729 1.040646 GGCCGATATCCACTGACTCA 58.959 55.000 0.00 0.00 0.00 3.41
615 730 1.620819 GGCCGATATCCACTGACTCAT 59.379 52.381 0.00 0.00 0.00 2.90
616 731 2.037772 GGCCGATATCCACTGACTCATT 59.962 50.000 0.00 0.00 0.00 2.57
617 732 3.062763 GCCGATATCCACTGACTCATTG 58.937 50.000 0.00 0.00 0.00 2.82
618 733 3.493350 GCCGATATCCACTGACTCATTGT 60.493 47.826 0.00 0.00 0.00 2.71
619 734 4.302455 CCGATATCCACTGACTCATTGTC 58.698 47.826 0.00 0.00 45.54 3.18
634 749 3.958147 TCATTGTCGTCAAGCCCTATCTA 59.042 43.478 0.97 0.00 36.97 1.98
639 754 7.392494 TTGTCGTCAAGCCCTATCTATATAG 57.608 40.000 3.10 3.10 35.73 1.31
646 769 8.463607 GTCAAGCCCTATCTATATAGTTCTCAC 58.536 40.741 9.58 0.00 34.36 3.51
699 822 1.732259 GCACATGCACGCTTACTAGTT 59.268 47.619 0.00 0.00 41.59 2.24
700 823 2.927477 GCACATGCACGCTTACTAGTTA 59.073 45.455 0.00 0.00 41.59 2.24
701 824 3.555956 GCACATGCACGCTTACTAGTTAT 59.444 43.478 0.00 0.00 41.59 1.89
702 825 4.034048 GCACATGCACGCTTACTAGTTATT 59.966 41.667 0.00 0.00 41.59 1.40
703 826 5.233476 GCACATGCACGCTTACTAGTTATTA 59.767 40.000 0.00 0.00 41.59 0.98
704 827 6.562270 GCACATGCACGCTTACTAGTTATTAG 60.562 42.308 0.00 0.00 41.59 1.73
705 828 5.983720 ACATGCACGCTTACTAGTTATTAGG 59.016 40.000 0.00 0.00 33.42 2.69
706 829 5.587388 TGCACGCTTACTAGTTATTAGGT 57.413 39.130 0.00 0.00 33.42 3.08
707 830 6.698008 TGCACGCTTACTAGTTATTAGGTA 57.302 37.500 0.00 0.00 33.42 3.08
708 831 7.099266 TGCACGCTTACTAGTTATTAGGTAA 57.901 36.000 0.00 0.00 33.42 2.85
709 832 7.546358 TGCACGCTTACTAGTTATTAGGTAAA 58.454 34.615 0.00 0.00 33.42 2.01
710 833 8.034215 TGCACGCTTACTAGTTATTAGGTAAAA 58.966 33.333 0.00 0.00 33.42 1.52
711 834 8.872845 GCACGCTTACTAGTTATTAGGTAAAAA 58.127 33.333 0.00 0.00 33.42 1.94
725 848 7.868906 TTAGGTAAAAATAAAGATGGGACCG 57.131 36.000 0.00 0.00 0.00 4.79
726 849 6.069705 AGGTAAAAATAAAGATGGGACCGA 57.930 37.500 0.00 0.00 0.00 4.69
727 850 6.486941 AGGTAAAAATAAAGATGGGACCGAA 58.513 36.000 0.00 0.00 0.00 4.30
728 851 6.602009 AGGTAAAAATAAAGATGGGACCGAAG 59.398 38.462 0.00 0.00 0.00 3.79
729 852 6.376299 GGTAAAAATAAAGATGGGACCGAAGT 59.624 38.462 0.00 0.00 0.00 3.01
730 853 7.553760 GGTAAAAATAAAGATGGGACCGAAGTA 59.446 37.037 0.00 0.00 0.00 2.24
731 854 6.997239 AAAATAAAGATGGGACCGAAGTAC 57.003 37.500 0.00 0.00 0.00 2.73
732 855 5.952347 AATAAAGATGGGACCGAAGTACT 57.048 39.130 0.00 0.00 0.00 2.73
733 856 3.889520 AAAGATGGGACCGAAGTACTC 57.110 47.619 0.00 0.00 0.00 2.59
734 857 2.830651 AGATGGGACCGAAGTACTCT 57.169 50.000 0.00 0.00 0.00 3.24
735 858 3.103080 AGATGGGACCGAAGTACTCTT 57.897 47.619 0.00 0.00 36.51 2.85
736 859 4.246712 AGATGGGACCGAAGTACTCTTA 57.753 45.455 0.00 0.00 33.64 2.10
737 860 4.805744 AGATGGGACCGAAGTACTCTTAT 58.194 43.478 0.00 0.00 33.64 1.73
738 861 5.950023 AGATGGGACCGAAGTACTCTTATA 58.050 41.667 0.00 0.00 33.64 0.98
739 862 6.371278 AGATGGGACCGAAGTACTCTTATAA 58.629 40.000 0.00 0.00 33.64 0.98
740 863 6.837568 AGATGGGACCGAAGTACTCTTATAAA 59.162 38.462 0.00 0.00 33.64 1.40
741 864 6.855763 TGGGACCGAAGTACTCTTATAAAA 57.144 37.500 0.00 0.00 33.64 1.52
742 865 7.243604 TGGGACCGAAGTACTCTTATAAAAA 57.756 36.000 0.00 0.00 33.64 1.94
743 866 7.099120 TGGGACCGAAGTACTCTTATAAAAAC 58.901 38.462 0.00 0.00 33.64 2.43
744 867 7.099120 GGGACCGAAGTACTCTTATAAAAACA 58.901 38.462 0.00 0.00 33.64 2.83
745 868 7.603784 GGGACCGAAGTACTCTTATAAAAACAA 59.396 37.037 0.00 0.00 33.64 2.83
746 869 8.992073 GGACCGAAGTACTCTTATAAAAACAAA 58.008 33.333 0.00 0.00 33.64 2.83
763 886 7.780008 AAAACAAAAATCCCCTAGAAAAACG 57.220 32.000 0.00 0.00 0.00 3.60
764 887 4.878439 ACAAAAATCCCCTAGAAAAACGC 58.122 39.130 0.00 0.00 0.00 4.84
765 888 4.242475 CAAAAATCCCCTAGAAAAACGCC 58.758 43.478 0.00 0.00 0.00 5.68
766 889 3.451402 AAATCCCCTAGAAAAACGCCT 57.549 42.857 0.00 0.00 0.00 5.52
767 890 4.579647 AAATCCCCTAGAAAAACGCCTA 57.420 40.909 0.00 0.00 0.00 3.93
768 891 3.555527 ATCCCCTAGAAAAACGCCTAC 57.444 47.619 0.00 0.00 0.00 3.18
769 892 1.556451 TCCCCTAGAAAAACGCCTACC 59.444 52.381 0.00 0.00 0.00 3.18
770 893 1.558294 CCCCTAGAAAAACGCCTACCT 59.442 52.381 0.00 0.00 0.00 3.08
771 894 2.026542 CCCCTAGAAAAACGCCTACCTT 60.027 50.000 0.00 0.00 0.00 3.50
772 895 3.198417 CCCCTAGAAAAACGCCTACCTTA 59.802 47.826 0.00 0.00 0.00 2.69
773 896 4.141551 CCCCTAGAAAAACGCCTACCTTAT 60.142 45.833 0.00 0.00 0.00 1.73
774 897 5.434408 CCCTAGAAAAACGCCTACCTTATT 58.566 41.667 0.00 0.00 0.00 1.40
775 898 5.884232 CCCTAGAAAAACGCCTACCTTATTT 59.116 40.000 0.00 0.00 0.00 1.40
776 899 6.376299 CCCTAGAAAAACGCCTACCTTATTTT 59.624 38.462 0.00 0.00 0.00 1.82
777 900 7.094075 CCCTAGAAAAACGCCTACCTTATTTTT 60.094 37.037 0.00 0.00 35.68 1.94
798 921 3.414549 TTTGAGACACTGAAAAACGCC 57.585 42.857 0.00 0.00 0.00 5.68
799 922 2.325583 TGAGACACTGAAAAACGCCT 57.674 45.000 0.00 0.00 0.00 5.52
800 923 3.462483 TGAGACACTGAAAAACGCCTA 57.538 42.857 0.00 0.00 0.00 3.93
835 958 2.422832 ACCGACTCCTATCTGAAACGTC 59.577 50.000 0.00 0.00 0.00 4.34
838 961 4.275196 CCGACTCCTATCTGAAACGTCATA 59.725 45.833 0.00 0.00 31.85 2.15
847 970 1.363885 GAAACGTCATACCCCACGGC 61.364 60.000 0.00 0.00 40.43 5.68
850 973 4.540735 GTCATACCCCACGGCCCG 62.541 72.222 0.00 0.00 0.00 6.13
877 1000 2.419574 CCCTTATATATGAACGGCCCGG 60.420 54.545 8.57 0.00 0.00 5.73
891 1018 3.827898 CCGGCTCGTCTCCTCCAC 61.828 72.222 0.00 0.00 0.00 4.02
892 1019 3.827898 CGGCTCGTCTCCTCCACC 61.828 72.222 0.00 0.00 0.00 4.61
893 1020 2.363147 GGCTCGTCTCCTCCACCT 60.363 66.667 0.00 0.00 0.00 4.00
894 1021 2.419739 GGCTCGTCTCCTCCACCTC 61.420 68.421 0.00 0.00 0.00 3.85
895 1022 1.679305 GCTCGTCTCCTCCACCTCA 60.679 63.158 0.00 0.00 0.00 3.86
896 1023 1.662438 GCTCGTCTCCTCCACCTCAG 61.662 65.000 0.00 0.00 0.00 3.35
897 1024 1.662438 CTCGTCTCCTCCACCTCAGC 61.662 65.000 0.00 0.00 0.00 4.26
898 1025 2.888863 GTCTCCTCCACCTCAGCG 59.111 66.667 0.00 0.00 0.00 5.18
899 1026 1.679305 GTCTCCTCCACCTCAGCGA 60.679 63.158 0.00 0.00 0.00 4.93
900 1027 1.679305 TCTCCTCCACCTCAGCGAC 60.679 63.158 0.00 0.00 0.00 5.19
901 1028 3.057547 CTCCTCCACCTCAGCGACG 62.058 68.421 0.00 0.00 0.00 5.12
902 1029 3.062466 CCTCCACCTCAGCGACGA 61.062 66.667 0.00 0.00 0.00 4.20
903 1030 2.418910 CCTCCACCTCAGCGACGAT 61.419 63.158 0.00 0.00 0.00 3.73
904 1031 1.101635 CCTCCACCTCAGCGACGATA 61.102 60.000 0.00 0.00 0.00 2.92
905 1032 0.309302 CTCCACCTCAGCGACGATAG 59.691 60.000 0.00 0.00 46.19 2.08
906 1033 1.101635 TCCACCTCAGCGACGATAGG 61.102 60.000 0.00 3.93 43.77 2.57
907 1034 1.299468 CACCTCAGCGACGATAGGC 60.299 63.158 0.00 0.00 44.83 3.93
916 1043 2.674296 GACGATAGGCGGAACCAAC 58.326 57.895 0.00 0.00 46.49 3.77
917 1044 0.808847 GACGATAGGCGGAACCAACC 60.809 60.000 0.00 0.00 46.49 3.77
918 1045 1.219664 CGATAGGCGGAACCAACCA 59.780 57.895 0.00 0.00 43.14 3.67
919 1046 0.391927 CGATAGGCGGAACCAACCAA 60.392 55.000 0.00 0.00 43.14 3.67
920 1047 1.828979 GATAGGCGGAACCAACCAAA 58.171 50.000 0.00 0.00 43.14 3.28
921 1048 1.471287 GATAGGCGGAACCAACCAAAC 59.529 52.381 0.00 0.00 43.14 2.93
922 1049 0.537828 TAGGCGGAACCAACCAAACC 60.538 55.000 0.00 0.00 43.14 3.27
923 1050 2.732016 GCGGAACCAACCAAACCC 59.268 61.111 0.00 0.00 0.00 4.11
924 1051 2.863346 GCGGAACCAACCAAACCCC 61.863 63.158 0.00 0.00 0.00 4.95
925 1052 1.455959 CGGAACCAACCAAACCCCA 60.456 57.895 0.00 0.00 0.00 4.96
926 1053 1.740332 CGGAACCAACCAAACCCCAC 61.740 60.000 0.00 0.00 0.00 4.61
927 1054 0.688087 GGAACCAACCAAACCCCACA 60.688 55.000 0.00 0.00 0.00 4.17
928 1055 1.196012 GAACCAACCAAACCCCACAA 58.804 50.000 0.00 0.00 0.00 3.33
931 1058 0.467804 CCAACCAAACCCCACAAAGG 59.532 55.000 0.00 0.00 37.03 3.11
937 1064 1.539827 CAAACCCCACAAAGGACGATC 59.460 52.381 0.00 0.00 41.22 3.69
942 1069 2.128429 CCCACAAAGGACGATCGATCG 61.128 57.143 38.53 38.53 44.75 3.69
961 1088 3.537874 CCCGACTCCGATCCCACC 61.538 72.222 0.00 0.00 38.22 4.61
971 1098 1.735376 CGATCCCACCGACGGAATCT 61.735 60.000 23.38 0.26 31.75 2.40
1013 1145 0.106708 TATCGCATGGCCAACTCCTC 59.893 55.000 10.96 0.00 0.00 3.71
1046 1178 2.347490 CCACTCCCACCAGGTTCG 59.653 66.667 0.00 0.00 36.75 3.95
1060 1192 2.896854 TTCGCATGCATCTCCCGC 60.897 61.111 19.57 0.00 0.00 6.13
1068 1200 3.610669 CATCTCCCGCCCCTCTCG 61.611 72.222 0.00 0.00 0.00 4.04
1072 1204 2.757099 TCCCGCCCCTCTCGTAAC 60.757 66.667 0.00 0.00 0.00 2.50
1073 1205 2.758737 CCCGCCCCTCTCGTAACT 60.759 66.667 0.00 0.00 0.00 2.24
1074 1206 2.356780 CCCGCCCCTCTCGTAACTT 61.357 63.158 0.00 0.00 0.00 2.66
1075 1207 1.141234 CCGCCCCTCTCGTAACTTC 59.859 63.158 0.00 0.00 0.00 3.01
1076 1208 1.321074 CCGCCCCTCTCGTAACTTCT 61.321 60.000 0.00 0.00 0.00 2.85
1119 1251 2.049063 GACTCACGGCTGCGAACT 60.049 61.111 0.00 0.00 0.00 3.01
1120 1252 2.049063 ACTCACGGCTGCGAACTC 60.049 61.111 0.00 0.00 0.00 3.01
1121 1253 2.049156 CTCACGGCTGCGAACTCA 60.049 61.111 0.00 0.00 0.00 3.41
1133 1265 0.110056 CGAACTCACCACAAGCATGC 60.110 55.000 10.51 10.51 0.00 4.06
1134 1266 0.953727 GAACTCACCACAAGCATGCA 59.046 50.000 21.98 0.00 0.00 3.96
1135 1267 1.337703 GAACTCACCACAAGCATGCAA 59.662 47.619 21.98 0.00 0.00 4.08
1137 1269 1.965643 ACTCACCACAAGCATGCAATT 59.034 42.857 21.98 2.93 0.00 2.32
1138 1270 2.029649 ACTCACCACAAGCATGCAATTC 60.030 45.455 21.98 0.00 0.00 2.17
1139 1271 1.962100 TCACCACAAGCATGCAATTCA 59.038 42.857 21.98 0.00 0.00 2.57
1140 1272 2.029739 TCACCACAAGCATGCAATTCAG 60.030 45.455 21.98 6.28 0.00 3.02
1141 1273 1.274167 ACCACAAGCATGCAATTCAGG 59.726 47.619 21.98 15.38 0.00 3.86
1142 1274 1.274167 CCACAAGCATGCAATTCAGGT 59.726 47.619 21.98 3.84 0.00 4.00
1156 1288 5.560953 GCAATTCAGGTATTGACTAATCGGC 60.561 44.000 3.23 0.00 37.65 5.54
1159 1291 3.958147 TCAGGTATTGACTAATCGGCTCA 59.042 43.478 0.00 0.00 0.00 4.26
1164 1296 5.406780 GGTATTGACTAATCGGCTCAGATTG 59.593 44.000 11.08 5.85 40.66 2.67
1207 1339 5.163513 ACGGAATTGCTTAATTTGCTCTTG 58.836 37.500 0.00 0.00 0.00 3.02
1257 1390 8.469200 CATCCATTCTAACTTAATTTTGGCTGA 58.531 33.333 0.00 0.00 0.00 4.26
1411 1550 3.018193 ACCACCACCACCACCACA 61.018 61.111 0.00 0.00 0.00 4.17
1418 1563 3.556306 CCACCACCACAGACCGGT 61.556 66.667 6.92 6.92 37.16 5.28
1549 1697 0.110056 CAGAAGAAGCGCGCACATTT 60.110 50.000 35.10 19.25 0.00 2.32
1663 1811 1.079819 CGACAGCTCGTCCCATTGT 60.080 57.895 9.71 0.00 42.07 2.71
1683 1831 2.317371 AGGAGGAGTATGGATCGCAT 57.683 50.000 2.80 2.80 0.00 4.73
1696 1844 0.608856 ATCGCATGTGGTTTGCTGGA 60.609 50.000 6.39 0.00 37.96 3.86
1771 1926 0.460311 GCTATGACGTACACTGCCCT 59.540 55.000 0.00 0.00 0.00 5.19
1836 1993 4.505313 TCTAGTGCCTATAAGACATGCG 57.495 45.455 0.00 0.00 0.00 4.73
1985 2214 5.953183 TGGCAGATTAACAGTGCAAATAAG 58.047 37.500 7.58 0.00 39.05 1.73
2034 2264 9.953697 TGCTTACAGTAAAATATTGTTTTTCGT 57.046 25.926 0.00 0.00 31.54 3.85
2039 2269 7.799914 ACAGTAAAATATTGTTTTTCGTCGTCC 59.200 33.333 0.00 0.00 31.54 4.79
2084 2314 7.085116 GGATAGGTCACACTAATGTTATCTCG 58.915 42.308 0.00 0.00 36.72 4.04
2398 2636 4.692228 TGTGAATGGCCTCTTTGAAAAAC 58.308 39.130 3.32 0.00 0.00 2.43
2418 2656 4.537945 ACATGCTACTAGGGTTCCTCTA 57.462 45.455 0.00 0.00 34.61 2.43
2425 2663 1.409427 CTAGGGTTCCTCTAACAGCCG 59.591 57.143 0.00 0.00 40.08 5.52
2429 2667 3.659089 TTCCTCTAACAGCCGCCGC 62.659 63.158 0.00 0.00 0.00 6.53
2779 3017 2.989909 TCATGTATCTTGCTGGTGGTG 58.010 47.619 0.00 0.00 0.00 4.17
2780 3018 2.571202 TCATGTATCTTGCTGGTGGTGA 59.429 45.455 0.00 0.00 0.00 4.02
2781 3019 2.768253 TGTATCTTGCTGGTGGTGAG 57.232 50.000 0.00 0.00 0.00 3.51
2782 3020 2.256306 TGTATCTTGCTGGTGGTGAGA 58.744 47.619 0.00 0.00 0.00 3.27
2783 3021 2.028112 TGTATCTTGCTGGTGGTGAGAC 60.028 50.000 0.00 0.00 0.00 3.36
2784 3022 0.036952 ATCTTGCTGGTGGTGAGACG 60.037 55.000 0.00 0.00 0.00 4.18
2785 3023 1.112916 TCTTGCTGGTGGTGAGACGA 61.113 55.000 0.00 0.00 0.00 4.20
2786 3024 0.036952 CTTGCTGGTGGTGAGACGAT 60.037 55.000 0.00 0.00 0.00 3.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
102 103 3.618594 CCACAATCCATAACTCTGACACG 59.381 47.826 0.00 0.00 0.00 4.49
104 105 4.777366 TCTCCACAATCCATAACTCTGACA 59.223 41.667 0.00 0.00 0.00 3.58
108 109 4.104086 TGGTCTCCACAATCCATAACTCT 58.896 43.478 0.00 0.00 0.00 3.24
189 192 9.500785 TGAACTCTAACACATCATTATTTCACA 57.499 29.630 0.00 0.00 0.00 3.58
190 193 9.760660 GTGAACTCTAACACATCATTATTTCAC 57.239 33.333 0.00 0.00 37.05 3.18
191 194 9.500785 TGTGAACTCTAACACATCATTATTTCA 57.499 29.630 0.00 0.00 41.19 2.69
269 272 9.512588 AAATGAGTAAATGTCTGAGACTTTCAT 57.487 29.630 14.42 10.14 34.68 2.57
309 312 4.929819 AAGGGTACAAATTGTGTCCAAC 57.070 40.909 9.15 0.00 41.98 3.77
310 313 5.422331 TCAAAAGGGTACAAATTGTGTCCAA 59.578 36.000 9.15 0.00 41.98 3.53
340 451 3.380393 AGGGGTTTGCCTAACACTTTTT 58.620 40.909 1.67 0.00 40.18 1.94
342 453 2.767644 AGGGGTTTGCCTAACACTTT 57.232 45.000 1.67 0.00 40.18 2.66
343 454 3.396611 TCTTAGGGGTTTGCCTAACACTT 59.603 43.478 0.00 0.00 40.18 3.16
344 455 2.983898 TCTTAGGGGTTTGCCTAACACT 59.016 45.455 0.00 2.14 40.18 3.55
345 456 3.428413 TCTTAGGGGTTTGCCTAACAC 57.572 47.619 0.00 0.00 39.55 3.32
347 458 4.404640 ACTTTCTTAGGGGTTTGCCTAAC 58.595 43.478 0.00 0.00 35.94 2.34
348 459 4.734843 ACTTTCTTAGGGGTTTGCCTAA 57.265 40.909 0.00 0.00 34.45 2.69
349 460 6.397217 AATACTTTCTTAGGGGTTTGCCTA 57.603 37.500 0.00 0.00 34.45 3.93
350 461 4.948062 ATACTTTCTTAGGGGTTTGCCT 57.052 40.909 0.00 0.00 34.45 4.75
351 462 5.995565 AAATACTTTCTTAGGGGTTTGCC 57.004 39.130 0.00 0.00 0.00 4.52
352 463 5.637810 GCAAAATACTTTCTTAGGGGTTTGC 59.362 40.000 0.00 0.00 38.92 3.68
353 464 6.163476 GGCAAAATACTTTCTTAGGGGTTTG 58.837 40.000 0.00 0.00 0.00 2.93
357 468 5.016831 AGTGGCAAAATACTTTCTTAGGGG 58.983 41.667 0.00 0.00 0.00 4.79
358 469 7.881775 ATAGTGGCAAAATACTTTCTTAGGG 57.118 36.000 0.00 0.00 0.00 3.53
407 522 6.038161 CAGAAGAGTACAAATTGTGTCCAACA 59.962 38.462 9.15 0.00 41.98 3.33
409 524 6.353323 TCAGAAGAGTACAAATTGTGTCCAA 58.647 36.000 9.15 0.00 41.98 3.53
437 552 7.561251 AGTTGGTATTTTGCCTAACACTTTTT 58.439 30.769 0.00 0.00 0.00 1.94
438 553 7.119709 AGTTGGTATTTTGCCTAACACTTTT 57.880 32.000 0.00 0.00 0.00 2.27
439 554 6.322712 TGAGTTGGTATTTTGCCTAACACTTT 59.677 34.615 0.00 0.00 0.00 2.66
440 555 5.830991 TGAGTTGGTATTTTGCCTAACACTT 59.169 36.000 0.00 0.00 0.00 3.16
441 556 5.381757 TGAGTTGGTATTTTGCCTAACACT 58.618 37.500 0.00 0.00 0.00 3.55
442 557 5.699097 TGAGTTGGTATTTTGCCTAACAC 57.301 39.130 0.00 0.00 0.00 3.32
443 558 4.217550 GCTGAGTTGGTATTTTGCCTAACA 59.782 41.667 0.00 0.00 0.00 2.41
444 559 4.671766 CGCTGAGTTGGTATTTTGCCTAAC 60.672 45.833 0.00 0.00 0.00 2.34
445 560 3.438781 CGCTGAGTTGGTATTTTGCCTAA 59.561 43.478 0.00 0.00 0.00 2.69
446 561 3.006940 CGCTGAGTTGGTATTTTGCCTA 58.993 45.455 0.00 0.00 0.00 3.93
447 562 1.812571 CGCTGAGTTGGTATTTTGCCT 59.187 47.619 0.00 0.00 0.00 4.75
448 563 1.539827 ACGCTGAGTTGGTATTTTGCC 59.460 47.619 0.00 0.00 0.00 4.52
449 564 2.989422 ACGCTGAGTTGGTATTTTGC 57.011 45.000 0.00 0.00 0.00 3.68
450 565 3.676172 TCGTACGCTGAGTTGGTATTTTG 59.324 43.478 11.24 0.00 0.00 2.44
451 566 3.916761 TCGTACGCTGAGTTGGTATTTT 58.083 40.909 11.24 0.00 0.00 1.82
452 567 3.581024 TCGTACGCTGAGTTGGTATTT 57.419 42.857 11.24 0.00 0.00 1.40
453 568 3.581024 TTCGTACGCTGAGTTGGTATT 57.419 42.857 11.24 0.00 0.00 1.89
454 569 3.248266 GTTTCGTACGCTGAGTTGGTAT 58.752 45.455 11.24 0.00 0.00 2.73
455 570 2.607771 GGTTTCGTACGCTGAGTTGGTA 60.608 50.000 11.24 0.00 0.00 3.25
456 571 1.494824 GTTTCGTACGCTGAGTTGGT 58.505 50.000 11.24 0.00 0.00 3.67
457 572 0.788391 GGTTTCGTACGCTGAGTTGG 59.212 55.000 11.24 0.00 0.00 3.77
458 573 1.455786 CAGGTTTCGTACGCTGAGTTG 59.544 52.381 11.24 0.91 30.87 3.16
459 574 1.338973 TCAGGTTTCGTACGCTGAGTT 59.661 47.619 16.22 0.00 32.56 3.01
460 575 0.956633 TCAGGTTTCGTACGCTGAGT 59.043 50.000 16.22 0.00 32.56 3.41
461 576 2.060326 TTCAGGTTTCGTACGCTGAG 57.940 50.000 18.39 5.11 36.27 3.35
462 577 2.512485 TTTCAGGTTTCGTACGCTGA 57.488 45.000 16.22 16.22 34.39 4.26
463 578 3.595709 TTTTTCAGGTTTCGTACGCTG 57.404 42.857 11.24 12.10 0.00 5.18
464 579 5.927954 TTATTTTTCAGGTTTCGTACGCT 57.072 34.783 11.24 0.00 0.00 5.07
465 580 8.569683 GTTTATTATTTTTCAGGTTTCGTACGC 58.430 33.333 11.24 0.00 0.00 4.42
466 581 9.815936 AGTTTATTATTTTTCAGGTTTCGTACG 57.184 29.630 9.53 9.53 0.00 3.67
469 584 9.893305 CTGAGTTTATTATTTTTCAGGTTTCGT 57.107 29.630 0.00 0.00 0.00 3.85
470 585 8.850452 GCTGAGTTTATTATTTTTCAGGTTTCG 58.150 33.333 2.02 0.00 34.21 3.46
471 586 8.850452 CGCTGAGTTTATTATTTTTCAGGTTTC 58.150 33.333 2.02 0.00 34.21 2.78
472 587 8.357402 ACGCTGAGTTTATTATTTTTCAGGTTT 58.643 29.630 2.02 0.00 34.21 3.27
473 588 7.882179 ACGCTGAGTTTATTATTTTTCAGGTT 58.118 30.769 2.02 0.00 34.21 3.50
474 589 7.448748 ACGCTGAGTTTATTATTTTTCAGGT 57.551 32.000 2.02 0.00 34.21 4.00
475 590 9.438291 CATACGCTGAGTTTATTATTTTTCAGG 57.562 33.333 0.00 0.00 34.21 3.86
483 598 9.383519 CCCATATTCATACGCTGAGTTTATTAT 57.616 33.333 0.00 0.00 34.68 1.28
484 599 7.333423 GCCCATATTCATACGCTGAGTTTATTA 59.667 37.037 0.00 0.00 34.68 0.98
485 600 6.149474 GCCCATATTCATACGCTGAGTTTATT 59.851 38.462 0.00 0.00 34.68 1.40
486 601 5.643777 GCCCATATTCATACGCTGAGTTTAT 59.356 40.000 0.00 0.00 34.68 1.40
487 602 4.994852 GCCCATATTCATACGCTGAGTTTA 59.005 41.667 0.00 0.00 34.68 2.01
488 603 3.815401 GCCCATATTCATACGCTGAGTTT 59.185 43.478 0.00 0.00 34.68 2.66
489 604 3.181455 TGCCCATATTCATACGCTGAGTT 60.181 43.478 0.00 0.00 34.68 3.01
490 605 2.368548 TGCCCATATTCATACGCTGAGT 59.631 45.455 0.00 0.00 34.68 3.41
491 606 2.738846 GTGCCCATATTCATACGCTGAG 59.261 50.000 0.00 0.00 34.68 3.35
492 607 2.766313 GTGCCCATATTCATACGCTGA 58.234 47.619 0.00 0.00 0.00 4.26
493 608 1.460743 CGTGCCCATATTCATACGCTG 59.539 52.381 0.00 0.00 0.00 5.18
494 609 1.343142 TCGTGCCCATATTCATACGCT 59.657 47.619 0.00 0.00 0.00 5.07
495 610 1.790755 TCGTGCCCATATTCATACGC 58.209 50.000 0.00 0.00 0.00 4.42
496 611 2.478894 GGTTCGTGCCCATATTCATACG 59.521 50.000 0.00 0.00 0.00 3.06
497 612 2.478894 CGGTTCGTGCCCATATTCATAC 59.521 50.000 0.00 0.00 0.00 2.39
498 613 2.365941 TCGGTTCGTGCCCATATTCATA 59.634 45.455 0.00 0.00 0.00 2.15
499 614 1.140052 TCGGTTCGTGCCCATATTCAT 59.860 47.619 0.00 0.00 0.00 2.57
500 615 0.537653 TCGGTTCGTGCCCATATTCA 59.462 50.000 0.00 0.00 0.00 2.57
501 616 0.935196 GTCGGTTCGTGCCCATATTC 59.065 55.000 0.00 0.00 0.00 1.75
502 617 0.808453 CGTCGGTTCGTGCCCATATT 60.808 55.000 0.00 0.00 0.00 1.28
503 618 1.227147 CGTCGGTTCGTGCCCATAT 60.227 57.895 0.00 0.00 0.00 1.78
504 619 2.182284 CGTCGGTTCGTGCCCATA 59.818 61.111 0.00 0.00 0.00 2.74
505 620 3.642778 CTCGTCGGTTCGTGCCCAT 62.643 63.158 0.00 0.00 0.00 4.00
506 621 4.351938 CTCGTCGGTTCGTGCCCA 62.352 66.667 0.00 0.00 0.00 5.36
507 622 4.047059 TCTCGTCGGTTCGTGCCC 62.047 66.667 0.00 0.00 0.00 5.36
508 623 2.804090 GTCTCGTCGGTTCGTGCC 60.804 66.667 0.00 0.00 0.00 5.01
509 624 2.804090 GGTCTCGTCGGTTCGTGC 60.804 66.667 0.00 0.00 0.00 5.34
510 625 1.002250 CTTGGTCTCGTCGGTTCGTG 61.002 60.000 0.00 0.00 0.00 4.35
511 626 1.285023 CTTGGTCTCGTCGGTTCGT 59.715 57.895 0.00 0.00 0.00 3.85
512 627 2.087009 GCTTGGTCTCGTCGGTTCG 61.087 63.158 0.00 0.00 0.00 3.95
513 628 1.737008 GGCTTGGTCTCGTCGGTTC 60.737 63.158 0.00 0.00 0.00 3.62
514 629 2.342648 GGCTTGGTCTCGTCGGTT 59.657 61.111 0.00 0.00 0.00 4.44
515 630 3.692406 GGGCTTGGTCTCGTCGGT 61.692 66.667 0.00 0.00 0.00 4.69
516 631 4.796231 CGGGCTTGGTCTCGTCGG 62.796 72.222 0.00 0.00 0.00 4.79
517 632 3.966026 GACGGGCTTGGTCTCGTCG 62.966 68.421 0.27 0.00 41.60 5.12
518 633 2.126031 GACGGGCTTGGTCTCGTC 60.126 66.667 0.27 0.27 43.62 4.20
519 634 3.692406 GGACGGGCTTGGTCTCGT 61.692 66.667 0.00 0.00 38.62 4.18
520 635 3.358076 GAGGACGGGCTTGGTCTCG 62.358 68.421 0.00 0.00 34.82 4.04
521 636 2.579738 GAGGACGGGCTTGGTCTC 59.420 66.667 0.00 0.00 34.82 3.36
522 637 3.003763 GGAGGACGGGCTTGGTCT 61.004 66.667 0.00 0.00 34.82 3.85
523 638 4.452733 CGGAGGACGGGCTTGGTC 62.453 72.222 0.00 0.00 39.42 4.02
536 651 4.183686 CTTTGGCATGCGGCGGAG 62.184 66.667 12.44 0.78 46.16 4.63
567 682 9.490379 AGAGTTTTATGACAGACGAAAAACTAT 57.510 29.630 10.48 6.03 45.48 2.12
568 683 8.882415 AGAGTTTTATGACAGACGAAAAACTA 57.118 30.769 10.48 0.00 45.48 2.24
570 685 6.786103 CGAGAGTTTTATGACAGACGAAAAAC 59.214 38.462 0.00 0.00 39.28 2.43
571 686 6.073980 CCGAGAGTTTTATGACAGACGAAAAA 60.074 38.462 0.00 0.00 0.00 1.94
572 687 5.404366 CCGAGAGTTTTATGACAGACGAAAA 59.596 40.000 0.00 0.00 0.00 2.29
573 688 4.921515 CCGAGAGTTTTATGACAGACGAAA 59.078 41.667 0.00 0.00 0.00 3.46
574 689 4.482386 CCGAGAGTTTTATGACAGACGAA 58.518 43.478 0.00 0.00 0.00 3.85
575 690 3.672511 GCCGAGAGTTTTATGACAGACGA 60.673 47.826 0.00 0.00 0.00 4.20
576 691 2.599082 GCCGAGAGTTTTATGACAGACG 59.401 50.000 0.00 0.00 0.00 4.18
577 692 2.930682 GGCCGAGAGTTTTATGACAGAC 59.069 50.000 0.00 0.00 0.00 3.51
578 693 2.416836 CGGCCGAGAGTTTTATGACAGA 60.417 50.000 24.07 0.00 0.00 3.41
579 694 1.927174 CGGCCGAGAGTTTTATGACAG 59.073 52.381 24.07 0.00 0.00 3.51
580 695 1.546923 TCGGCCGAGAGTTTTATGACA 59.453 47.619 27.28 0.00 0.00 3.58
581 696 2.288961 TCGGCCGAGAGTTTTATGAC 57.711 50.000 27.28 0.00 0.00 3.06
582 697 4.321750 GGATATCGGCCGAGAGTTTTATGA 60.322 45.833 33.87 5.48 0.00 2.15
583 698 3.927142 GGATATCGGCCGAGAGTTTTATG 59.073 47.826 33.87 0.00 0.00 1.90
584 699 3.576982 TGGATATCGGCCGAGAGTTTTAT 59.423 43.478 33.87 23.53 0.00 1.40
585 700 2.960384 TGGATATCGGCCGAGAGTTTTA 59.040 45.455 33.87 19.72 0.00 1.52
586 701 1.760613 TGGATATCGGCCGAGAGTTTT 59.239 47.619 33.87 18.02 0.00 2.43
587 702 1.068741 GTGGATATCGGCCGAGAGTTT 59.931 52.381 33.87 18.82 0.00 2.66
588 703 0.674534 GTGGATATCGGCCGAGAGTT 59.325 55.000 33.87 19.23 0.00 3.01
589 704 0.178987 AGTGGATATCGGCCGAGAGT 60.179 55.000 33.87 20.99 0.00 3.24
590 705 0.242286 CAGTGGATATCGGCCGAGAG 59.758 60.000 33.87 12.15 0.00 3.20
591 706 0.179001 TCAGTGGATATCGGCCGAGA 60.179 55.000 33.87 30.45 0.00 4.04
592 707 0.039074 GTCAGTGGATATCGGCCGAG 60.039 60.000 33.87 17.01 0.00 4.63
593 708 0.467474 AGTCAGTGGATATCGGCCGA 60.467 55.000 33.12 33.12 0.00 5.54
594 709 0.039074 GAGTCAGTGGATATCGGCCG 60.039 60.000 22.12 22.12 0.00 6.13
595 710 1.040646 TGAGTCAGTGGATATCGGCC 58.959 55.000 0.00 0.00 0.00 6.13
596 711 3.062763 CAATGAGTCAGTGGATATCGGC 58.937 50.000 12.74 0.00 0.00 5.54
597 712 4.302455 GACAATGAGTCAGTGGATATCGG 58.698 47.826 23.28 0.00 46.77 4.18
609 724 1.079503 GGGCTTGACGACAATGAGTC 58.920 55.000 0.00 6.66 44.02 3.36
610 725 0.687354 AGGGCTTGACGACAATGAGT 59.313 50.000 0.00 0.00 35.37 3.41
611 726 2.672961 TAGGGCTTGACGACAATGAG 57.327 50.000 0.00 0.00 35.37 2.90
612 727 2.766263 AGATAGGGCTTGACGACAATGA 59.234 45.455 0.00 0.00 35.37 2.57
613 728 3.185246 AGATAGGGCTTGACGACAATG 57.815 47.619 0.00 0.00 35.37 2.82
614 729 6.859112 ATATAGATAGGGCTTGACGACAAT 57.141 37.500 0.00 0.00 35.37 2.71
615 730 6.946583 ACTATATAGATAGGGCTTGACGACAA 59.053 38.462 16.79 0.00 39.63 3.18
616 731 6.482524 ACTATATAGATAGGGCTTGACGACA 58.517 40.000 16.79 0.00 39.63 4.35
617 732 7.337436 AGAACTATATAGATAGGGCTTGACGAC 59.663 40.741 16.79 0.00 39.63 4.34
618 733 7.403671 AGAACTATATAGATAGGGCTTGACGA 58.596 38.462 16.79 0.00 39.63 4.20
619 734 7.337184 TGAGAACTATATAGATAGGGCTTGACG 59.663 40.741 16.79 0.00 39.63 4.35
620 735 8.463607 GTGAGAACTATATAGATAGGGCTTGAC 58.536 40.741 16.79 3.83 39.63 3.18
621 736 8.170730 TGTGAGAACTATATAGATAGGGCTTGA 58.829 37.037 16.79 0.00 39.63 3.02
622 737 8.354711 TGTGAGAACTATATAGATAGGGCTTG 57.645 38.462 16.79 0.00 39.63 4.01
683 806 6.158023 ACCTAATAACTAGTAAGCGTGCAT 57.842 37.500 0.00 0.00 0.00 3.96
699 822 9.563748 CGGTCCCATCTTTATTTTTACCTAATA 57.436 33.333 0.00 0.00 0.00 0.98
700 823 8.276477 TCGGTCCCATCTTTATTTTTACCTAAT 58.724 33.333 0.00 0.00 0.00 1.73
701 824 7.631933 TCGGTCCCATCTTTATTTTTACCTAA 58.368 34.615 0.00 0.00 0.00 2.69
702 825 7.197901 TCGGTCCCATCTTTATTTTTACCTA 57.802 36.000 0.00 0.00 0.00 3.08
703 826 6.069705 TCGGTCCCATCTTTATTTTTACCT 57.930 37.500 0.00 0.00 0.00 3.08
704 827 6.376299 ACTTCGGTCCCATCTTTATTTTTACC 59.624 38.462 0.00 0.00 0.00 2.85
705 828 7.387119 ACTTCGGTCCCATCTTTATTTTTAC 57.613 36.000 0.00 0.00 0.00 2.01
706 829 8.323567 AGTACTTCGGTCCCATCTTTATTTTTA 58.676 33.333 0.00 0.00 0.00 1.52
707 830 7.173032 AGTACTTCGGTCCCATCTTTATTTTT 58.827 34.615 0.00 0.00 0.00 1.94
708 831 6.718294 AGTACTTCGGTCCCATCTTTATTTT 58.282 36.000 0.00 0.00 0.00 1.82
709 832 6.156429 AGAGTACTTCGGTCCCATCTTTATTT 59.844 38.462 0.00 0.00 0.00 1.40
710 833 5.661759 AGAGTACTTCGGTCCCATCTTTATT 59.338 40.000 0.00 0.00 0.00 1.40
711 834 5.209659 AGAGTACTTCGGTCCCATCTTTAT 58.790 41.667 0.00 0.00 0.00 1.40
712 835 4.607239 AGAGTACTTCGGTCCCATCTTTA 58.393 43.478 0.00 0.00 0.00 1.85
713 836 3.442076 AGAGTACTTCGGTCCCATCTTT 58.558 45.455 0.00 0.00 0.00 2.52
714 837 3.103080 AGAGTACTTCGGTCCCATCTT 57.897 47.619 0.00 0.00 0.00 2.40
715 838 2.830651 AGAGTACTTCGGTCCCATCT 57.169 50.000 0.00 0.00 0.00 2.90
716 839 6.645790 TTATAAGAGTACTTCGGTCCCATC 57.354 41.667 0.00 0.00 37.53 3.51
717 840 7.427989 TTTTATAAGAGTACTTCGGTCCCAT 57.572 36.000 0.00 0.00 37.53 4.00
718 841 6.855763 TTTTATAAGAGTACTTCGGTCCCA 57.144 37.500 0.00 0.00 37.53 4.37
719 842 7.099120 TGTTTTTATAAGAGTACTTCGGTCCC 58.901 38.462 0.00 0.00 37.53 4.46
720 843 8.538409 TTGTTTTTATAAGAGTACTTCGGTCC 57.462 34.615 0.00 0.00 37.53 4.46
737 860 9.315525 CGTTTTTCTAGGGGATTTTTGTTTTTA 57.684 29.630 0.00 0.00 0.00 1.52
738 861 7.201661 GCGTTTTTCTAGGGGATTTTTGTTTTT 60.202 33.333 0.00 0.00 0.00 1.94
739 862 6.259167 GCGTTTTTCTAGGGGATTTTTGTTTT 59.741 34.615 0.00 0.00 0.00 2.43
740 863 5.756347 GCGTTTTTCTAGGGGATTTTTGTTT 59.244 36.000 0.00 0.00 0.00 2.83
741 864 5.294356 GCGTTTTTCTAGGGGATTTTTGTT 58.706 37.500 0.00 0.00 0.00 2.83
742 865 4.262292 GGCGTTTTTCTAGGGGATTTTTGT 60.262 41.667 0.00 0.00 0.00 2.83
743 866 4.021456 AGGCGTTTTTCTAGGGGATTTTTG 60.021 41.667 0.00 0.00 0.00 2.44
744 867 4.157246 AGGCGTTTTTCTAGGGGATTTTT 58.843 39.130 0.00 0.00 0.00 1.94
745 868 3.774734 AGGCGTTTTTCTAGGGGATTTT 58.225 40.909 0.00 0.00 0.00 1.82
746 869 3.451402 AGGCGTTTTTCTAGGGGATTT 57.549 42.857 0.00 0.00 0.00 2.17
747 870 3.371273 GGTAGGCGTTTTTCTAGGGGATT 60.371 47.826 0.00 0.00 0.00 3.01
748 871 2.172082 GGTAGGCGTTTTTCTAGGGGAT 59.828 50.000 0.00 0.00 0.00 3.85
749 872 1.556451 GGTAGGCGTTTTTCTAGGGGA 59.444 52.381 0.00 0.00 0.00 4.81
750 873 1.558294 AGGTAGGCGTTTTTCTAGGGG 59.442 52.381 0.00 0.00 0.00 4.79
751 874 3.345508 AAGGTAGGCGTTTTTCTAGGG 57.654 47.619 0.00 0.00 0.00 3.53
752 875 6.997239 AAATAAGGTAGGCGTTTTTCTAGG 57.003 37.500 0.00 0.00 0.00 3.02
776 899 4.082463 AGGCGTTTTTCAGTGTCTCAAAAA 60.082 37.500 0.00 0.00 0.00 1.94
777 900 3.442273 AGGCGTTTTTCAGTGTCTCAAAA 59.558 39.130 0.00 0.00 0.00 2.44
778 901 3.013921 AGGCGTTTTTCAGTGTCTCAAA 58.986 40.909 0.00 0.00 0.00 2.69
779 902 2.639065 AGGCGTTTTTCAGTGTCTCAA 58.361 42.857 0.00 0.00 0.00 3.02
780 903 2.325583 AGGCGTTTTTCAGTGTCTCA 57.674 45.000 0.00 0.00 0.00 3.27
781 904 2.479275 GGTAGGCGTTTTTCAGTGTCTC 59.521 50.000 0.00 0.00 0.00 3.36
782 905 2.104281 AGGTAGGCGTTTTTCAGTGTCT 59.896 45.455 0.00 0.00 0.00 3.41
783 906 2.223377 CAGGTAGGCGTTTTTCAGTGTC 59.777 50.000 0.00 0.00 0.00 3.67
784 907 2.158871 TCAGGTAGGCGTTTTTCAGTGT 60.159 45.455 0.00 0.00 0.00 3.55
785 908 2.489971 TCAGGTAGGCGTTTTTCAGTG 58.510 47.619 0.00 0.00 0.00 3.66
786 909 2.922740 TCAGGTAGGCGTTTTTCAGT 57.077 45.000 0.00 0.00 0.00 3.41
787 910 4.669197 CGAATTCAGGTAGGCGTTTTTCAG 60.669 45.833 6.22 0.00 0.00 3.02
788 911 3.187637 CGAATTCAGGTAGGCGTTTTTCA 59.812 43.478 6.22 0.00 0.00 2.69
789 912 3.425758 CCGAATTCAGGTAGGCGTTTTTC 60.426 47.826 6.22 0.00 0.00 2.29
790 913 2.486592 CCGAATTCAGGTAGGCGTTTTT 59.513 45.455 6.22 0.00 0.00 1.94
791 914 2.081462 CCGAATTCAGGTAGGCGTTTT 58.919 47.619 6.22 0.00 0.00 2.43
792 915 1.276989 TCCGAATTCAGGTAGGCGTTT 59.723 47.619 6.22 0.00 0.00 3.60
793 916 0.899720 TCCGAATTCAGGTAGGCGTT 59.100 50.000 6.22 0.00 0.00 4.84
794 917 0.175073 GTCCGAATTCAGGTAGGCGT 59.825 55.000 6.22 0.00 0.00 5.68
795 918 0.174845 TGTCCGAATTCAGGTAGGCG 59.825 55.000 6.22 0.00 0.00 5.52
796 919 1.653151 GTGTCCGAATTCAGGTAGGC 58.347 55.000 6.22 2.46 0.00 3.93
797 920 2.311124 GGTGTCCGAATTCAGGTAGG 57.689 55.000 6.22 0.00 0.00 3.18
847 970 1.342672 ATATATAAGGGCCGGCCGGG 61.343 60.000 43.31 26.06 36.85 5.73
850 973 2.640184 GTTCATATATAAGGGCCGGCC 58.360 52.381 38.57 38.57 0.00 6.13
858 981 2.093658 AGCCGGGCCGTTCATATATAAG 60.094 50.000 26.32 5.57 0.00 1.73
859 982 1.903860 AGCCGGGCCGTTCATATATAA 59.096 47.619 26.32 0.00 0.00 0.98
860 983 1.479323 GAGCCGGGCCGTTCATATATA 59.521 52.381 26.32 0.00 0.00 0.86
861 984 0.249398 GAGCCGGGCCGTTCATATAT 59.751 55.000 26.32 0.44 0.00 0.86
877 1000 1.662438 CTGAGGTGGAGGAGACGAGC 61.662 65.000 0.00 0.00 0.00 5.03
887 1014 1.101635 CCTATCGTCGCTGAGGTGGA 61.102 60.000 0.00 0.00 0.00 4.02
888 1015 1.360551 CCTATCGTCGCTGAGGTGG 59.639 63.158 0.00 0.00 0.00 4.61
890 1017 2.835705 CGCCTATCGTCGCTGAGGT 61.836 63.158 8.21 0.00 0.00 3.85
891 1018 2.050895 CGCCTATCGTCGCTGAGG 60.051 66.667 3.33 3.33 0.00 3.86
892 1019 2.050895 CCGCCTATCGTCGCTGAG 60.051 66.667 0.00 0.00 36.19 3.35
893 1020 2.116533 TTCCGCCTATCGTCGCTGA 61.117 57.895 0.00 0.00 36.19 4.26
894 1021 1.944676 GTTCCGCCTATCGTCGCTG 60.945 63.158 0.00 0.00 36.19 5.18
895 1022 2.412112 GTTCCGCCTATCGTCGCT 59.588 61.111 0.00 0.00 36.19 4.93
896 1023 2.657620 GGTTCCGCCTATCGTCGC 60.658 66.667 0.00 0.00 36.19 5.19
897 1024 1.140161 TTGGTTCCGCCTATCGTCG 59.860 57.895 0.00 0.00 38.35 5.12
898 1025 0.808847 GGTTGGTTCCGCCTATCGTC 60.809 60.000 0.00 0.00 38.35 4.20
899 1026 1.219935 GGTTGGTTCCGCCTATCGT 59.780 57.895 0.00 0.00 38.35 3.73
900 1027 0.391927 TTGGTTGGTTCCGCCTATCG 60.392 55.000 4.49 0.00 38.35 2.92
901 1028 1.471287 GTTTGGTTGGTTCCGCCTATC 59.529 52.381 4.49 0.00 38.35 2.08
902 1029 1.541379 GTTTGGTTGGTTCCGCCTAT 58.459 50.000 4.49 0.00 38.35 2.57
903 1030 0.537828 GGTTTGGTTGGTTCCGCCTA 60.538 55.000 4.49 0.00 38.35 3.93
904 1031 1.830847 GGTTTGGTTGGTTCCGCCT 60.831 57.895 4.49 0.00 38.35 5.52
905 1032 2.732016 GGTTTGGTTGGTTCCGCC 59.268 61.111 0.00 0.00 37.90 6.13
906 1033 2.732016 GGGTTTGGTTGGTTCCGC 59.268 61.111 0.00 0.00 0.00 5.54
907 1034 1.455959 TGGGGTTTGGTTGGTTCCG 60.456 57.895 0.00 0.00 0.00 4.30
908 1035 0.688087 TGTGGGGTTTGGTTGGTTCC 60.688 55.000 0.00 0.00 0.00 3.62
909 1036 1.196012 TTGTGGGGTTTGGTTGGTTC 58.804 50.000 0.00 0.00 0.00 3.62
910 1037 1.557371 CTTTGTGGGGTTTGGTTGGTT 59.443 47.619 0.00 0.00 0.00 3.67
911 1038 1.199615 CTTTGTGGGGTTTGGTTGGT 58.800 50.000 0.00 0.00 0.00 3.67
912 1039 0.467804 CCTTTGTGGGGTTTGGTTGG 59.532 55.000 0.00 0.00 0.00 3.77
913 1040 1.138069 GTCCTTTGTGGGGTTTGGTTG 59.862 52.381 0.00 0.00 36.20 3.77
914 1041 1.491668 GTCCTTTGTGGGGTTTGGTT 58.508 50.000 0.00 0.00 36.20 3.67
915 1042 0.753848 CGTCCTTTGTGGGGTTTGGT 60.754 55.000 0.00 0.00 36.20 3.67
916 1043 0.466555 TCGTCCTTTGTGGGGTTTGG 60.467 55.000 0.00 0.00 36.20 3.28
917 1044 1.539827 GATCGTCCTTTGTGGGGTTTG 59.460 52.381 0.00 0.00 36.20 2.93
918 1045 1.880646 CGATCGTCCTTTGTGGGGTTT 60.881 52.381 7.03 0.00 36.20 3.27
919 1046 0.321298 CGATCGTCCTTTGTGGGGTT 60.321 55.000 7.03 0.00 36.20 4.11
920 1047 1.189524 TCGATCGTCCTTTGTGGGGT 61.190 55.000 15.94 0.00 36.20 4.95
921 1048 0.178068 ATCGATCGTCCTTTGTGGGG 59.822 55.000 15.94 0.00 36.20 4.96
922 1049 1.571919 GATCGATCGTCCTTTGTGGG 58.428 55.000 15.94 0.00 36.20 4.61
923 1050 1.200483 CGATCGATCGTCCTTTGTGG 58.800 55.000 33.95 7.36 44.74 4.17
925 1052 3.809728 GGCCGATCGATCGTCCTTTGT 62.810 57.143 37.36 0.00 44.25 2.83
926 1053 1.215655 GGCCGATCGATCGTCCTTTG 61.216 60.000 37.36 25.21 44.25 2.77
927 1054 1.067582 GGCCGATCGATCGTCCTTT 59.932 57.895 37.36 0.00 44.25 3.11
928 1055 2.728817 GGCCGATCGATCGTCCTT 59.271 61.111 37.36 0.00 44.25 3.36
943 1070 4.222847 GTGGGATCGGAGTCGGGC 62.223 72.222 0.00 0.00 36.95 6.13
944 1071 3.537874 GGTGGGATCGGAGTCGGG 61.538 72.222 0.00 0.00 36.95 5.14
945 1072 3.900892 CGGTGGGATCGGAGTCGG 61.901 72.222 0.00 0.00 36.95 4.79
946 1073 2.827190 TCGGTGGGATCGGAGTCG 60.827 66.667 0.00 0.00 37.82 4.18
947 1074 2.806237 GTCGGTGGGATCGGAGTC 59.194 66.667 0.00 0.00 0.00 3.36
948 1075 3.138798 CGTCGGTGGGATCGGAGT 61.139 66.667 0.00 0.00 0.00 3.85
949 1076 3.900892 CCGTCGGTGGGATCGGAG 61.901 72.222 2.08 0.00 39.89 4.63
1032 1164 1.746615 CATGCGAACCTGGTGGGAG 60.747 63.158 0.00 0.00 38.76 4.30
1036 1168 1.028330 AGATGCATGCGAACCTGGTG 61.028 55.000 14.09 0.00 0.00 4.17
1085 1217 2.125912 CCGCGAGTGGACCAGAAG 60.126 66.667 8.23 0.00 0.00 2.85
1105 1237 2.355837 GTGAGTTCGCAGCCGTGA 60.356 61.111 0.00 0.00 35.54 4.35
1119 1251 1.962100 TGAATTGCATGCTTGTGGTGA 59.038 42.857 20.33 0.00 0.00 4.02
1120 1252 2.333926 CTGAATTGCATGCTTGTGGTG 58.666 47.619 20.33 0.10 0.00 4.17
1121 1253 1.274167 CCTGAATTGCATGCTTGTGGT 59.726 47.619 20.33 0.00 0.00 4.16
1133 1265 5.760253 AGCCGATTAGTCAATACCTGAATTG 59.240 40.000 0.00 0.00 35.22 2.32
1134 1266 5.930135 AGCCGATTAGTCAATACCTGAATT 58.070 37.500 0.00 0.00 35.22 2.17
1135 1267 5.070446 TGAGCCGATTAGTCAATACCTGAAT 59.930 40.000 0.00 0.00 35.22 2.57
1137 1269 3.958147 TGAGCCGATTAGTCAATACCTGA 59.042 43.478 0.00 0.00 0.00 3.86
1138 1270 4.038042 TCTGAGCCGATTAGTCAATACCTG 59.962 45.833 0.00 0.00 0.00 4.00
1139 1271 4.215908 TCTGAGCCGATTAGTCAATACCT 58.784 43.478 0.00 0.00 0.00 3.08
1140 1272 4.585955 TCTGAGCCGATTAGTCAATACC 57.414 45.455 0.00 0.00 0.00 2.73
1141 1273 5.406780 CCAATCTGAGCCGATTAGTCAATAC 59.593 44.000 0.00 0.00 32.61 1.89
1142 1274 5.541845 CCAATCTGAGCCGATTAGTCAATA 58.458 41.667 0.00 0.00 32.61 1.90
1156 1288 1.588824 TTGCCGCAAGCCAATCTGAG 61.589 55.000 0.38 0.00 42.71 3.35
1159 1291 1.589716 GACTTGCCGCAAGCCAATCT 61.590 55.000 29.10 11.69 44.43 2.40
1177 1309 0.609151 TAAGCAATTCCGTCACCCGA 59.391 50.000 0.00 0.00 39.56 5.14
1178 1310 1.444836 TTAAGCAATTCCGTCACCCG 58.555 50.000 0.00 0.00 0.00 5.28
1219 1351 7.773149 AGTTAGAATGGATGTACTGTAGTGAC 58.227 38.462 0.00 0.00 0.00 3.67
1228 1360 9.516314 GCCAAAATTAAGTTAGAATGGATGTAC 57.484 33.333 8.00 0.00 0.00 2.90
1257 1390 2.089980 GAGTCCACTCATGCTGCAATT 58.910 47.619 6.36 0.00 42.42 2.32
1663 1811 2.971901 TGCGATCCATACTCCTCCTA 57.028 50.000 0.00 0.00 0.00 2.94
1683 1831 2.192861 CGCCTTCCAGCAAACCACA 61.193 57.895 0.00 0.00 0.00 4.17
1696 1844 2.345760 CCCAGCAGCAATTCGCCTT 61.346 57.895 0.00 0.00 44.04 4.35
1763 1918 1.211212 TCCATCATCTTCAGGGCAGTG 59.789 52.381 0.00 0.00 0.00 3.66
1836 1993 0.666913 ATCAAGATCCATGCTTGCGC 59.333 50.000 0.00 0.00 41.83 6.09
2034 2264 3.114668 TGGAAATTCAAGTTCGGACGA 57.885 42.857 0.00 0.00 0.00 4.20
2035 2265 3.181510 GGATGGAAATTCAAGTTCGGACG 60.182 47.826 0.00 0.00 0.00 4.79
2037 2267 3.006940 CGGATGGAAATTCAAGTTCGGA 58.993 45.455 0.00 0.00 0.00 4.55
2039 2269 2.097466 CCCGGATGGAAATTCAAGTTCG 59.903 50.000 0.73 0.00 37.49 3.95
2313 2546 0.329261 TGCCACATCCTCTTCCTTGG 59.671 55.000 0.00 0.00 0.00 3.61
2317 2550 0.908198 AGAGTGCCACATCCTCTTCC 59.092 55.000 0.00 0.00 31.64 3.46
2398 2636 4.649674 TGTTAGAGGAACCCTAGTAGCATG 59.350 45.833 0.00 0.00 37.22 4.06
2429 2667 3.474570 CCTGGAGGCGAGGGGAAG 61.475 72.222 0.00 0.00 0.00 3.46
2759 2997 2.571202 TCACCACCAGCAAGATACATGA 59.429 45.455 0.00 0.00 0.00 3.07
2760 2998 2.941064 CTCACCACCAGCAAGATACATG 59.059 50.000 0.00 0.00 0.00 3.21
2761 2999 2.840038 TCTCACCACCAGCAAGATACAT 59.160 45.455 0.00 0.00 0.00 2.29
2762 3000 2.028112 GTCTCACCACCAGCAAGATACA 60.028 50.000 0.00 0.00 0.00 2.29
2763 3001 2.622436 GTCTCACCACCAGCAAGATAC 58.378 52.381 0.00 0.00 0.00 2.24
2764 3002 1.204704 CGTCTCACCACCAGCAAGATA 59.795 52.381 0.00 0.00 0.00 1.98
2765 3003 0.036952 CGTCTCACCACCAGCAAGAT 60.037 55.000 0.00 0.00 0.00 2.40
2766 3004 1.112916 TCGTCTCACCACCAGCAAGA 61.113 55.000 0.00 0.00 0.00 3.02
2767 3005 0.036952 ATCGTCTCACCACCAGCAAG 60.037 55.000 0.00 0.00 0.00 4.01
2768 3006 2.057830 ATCGTCTCACCACCAGCAA 58.942 52.632 0.00 0.00 0.00 3.91
2769 3007 3.791640 ATCGTCTCACCACCAGCA 58.208 55.556 0.00 0.00 0.00 4.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.