Multiple sequence alignment - TraesCS5D01G070800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G070800 chr5D 100.000 4755 0 0 965 5719 68704911 68700157 0.000000e+00 8781
1 TraesCS5D01G070800 chr5D 100.000 546 0 0 1 546 68705875 68705330 0.000000e+00 1009
2 TraesCS5D01G070800 chr5A 95.919 2181 65 12 2295 4463 59621411 59619243 0.000000e+00 3513
3 TraesCS5D01G070800 chr5A 92.295 1194 70 9 4538 5719 59618972 59617789 0.000000e+00 1676
4 TraesCS5D01G070800 chr5A 91.232 958 43 18 1342 2296 59622623 59621704 0.000000e+00 1266
5 TraesCS5D01G070800 chr5A 88.000 225 14 6 994 1211 59623349 59623131 2.640000e-63 254
6 TraesCS5D01G070800 chr5B 94.990 2076 87 6 2378 4441 74663419 74661349 0.000000e+00 3241
7 TraesCS5D01G070800 chr5B 94.118 867 40 7 4546 5407 74661244 74660384 0.000000e+00 1308
8 TraesCS5D01G070800 chr5B 91.728 810 43 12 1576 2381 74669409 74668620 0.000000e+00 1103
9 TraesCS5D01G070800 chr5B 87.539 321 30 5 5406 5719 74660260 74659943 4.210000e-96 363
10 TraesCS5D01G070800 chr5B 94.093 237 12 1 994 1228 74670385 74670149 5.450000e-95 359
11 TraesCS5D01G070800 chr5B 81.191 319 21 11 175 480 74670783 74670491 2.680000e-53 220
12 TraesCS5D01G070800 chr5B 88.667 150 12 1 1342 1491 74669668 74669524 1.640000e-40 178
13 TraesCS5D01G070800 chr5B 82.119 151 22 3 3231 3376 335416552 335416702 2.160000e-24 124
14 TraesCS5D01G070800 chr1D 84.153 366 50 6 3016 3376 37906854 37907216 1.180000e-91 348
15 TraesCS5D01G070800 chr3B 87.861 173 19 2 1 172 98022321 98022492 9.720000e-48 202
16 TraesCS5D01G070800 chr3B 89.241 158 13 4 17 172 726993774 726993619 1.630000e-45 195
17 TraesCS5D01G070800 chr3D 87.879 165 19 1 10 173 56681770 56681934 5.850000e-45 193
18 TraesCS5D01G070800 chr1B 86.705 173 22 1 1 172 271741636 271741464 2.100000e-44 191
19 TraesCS5D01G070800 chr2B 86.628 172 22 1 1 171 38079961 38080132 7.560000e-44 189
20 TraesCS5D01G070800 chr7A 86.826 167 20 2 1 166 85030033 85029868 9.790000e-43 185
21 TraesCS5D01G070800 chr4B 86.826 167 21 1 1 166 53280394 53280228 9.790000e-43 185
22 TraesCS5D01G070800 chr4D 86.047 172 20 4 1 171 45343599 45343767 1.270000e-41 182
23 TraesCS5D01G070800 chr6D 85.632 174 22 3 1 172 221214515 221214687 4.550000e-41 180


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G070800 chr5D 68700157 68705875 5718 True 4895.000000 8781 100.000000 1 5719 2 chr5D.!!$R1 5718
1 TraesCS5D01G070800 chr5A 59617789 59623349 5560 True 1677.250000 3513 91.861500 994 5719 4 chr5A.!!$R1 4725
2 TraesCS5D01G070800 chr5B 74659943 74663419 3476 True 1637.333333 3241 92.215667 2378 5719 3 chr5B.!!$R1 3341
3 TraesCS5D01G070800 chr5B 74668620 74670783 2163 True 465.000000 1103 88.919750 175 2381 4 chr5B.!!$R2 2206

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
237 241 0.178068 AAATGAGCGCATCCTACGGT 59.822 50.000 11.47 0.0 45.07 4.83 F
261 265 0.179234 GCTCCTTCCCTCCAGTTAGC 59.821 60.000 0.00 0.0 0.00 3.09 F
1190 1235 0.322546 GCAGGTACCTTCCCCAGTTG 60.323 60.000 13.15 0.0 0.00 3.16 F
1277 1324 0.530744 TCCGTGTATGTGTCTGAGCC 59.469 55.000 0.00 0.0 0.00 4.70 F
2161 2696 0.616964 TCCTGACAGATGGAGCAGCT 60.617 55.000 3.32 0.0 0.00 4.24 F
3314 4145 1.542915 ACGCGGCTCTCTTGTTACTTA 59.457 47.619 12.47 0.0 0.00 2.24 F
4404 5247 1.234821 TGAAAACACTGGCATCGTCC 58.765 50.000 0.00 0.0 0.00 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1259 1306 0.246360 TGGCTCAGACACATACACGG 59.754 55.0 0.0 0.0 0.00 4.94 R
1310 1365 0.677288 ACGTGCTGTAGTAGTGGCAA 59.323 50.0 0.0 0.0 36.43 4.52 R
2267 2802 0.700564 ACATTGTCAGGATGCCCAGT 59.299 50.0 0.0 0.0 34.76 4.00 R
2867 3698 1.056660 AACACACCTGTCCAGTAGGG 58.943 55.0 0.0 0.0 39.71 3.53 R
4036 4869 1.742308 ACCTGACAAAAGGGAGGCTA 58.258 50.0 0.0 0.0 42.11 3.93 R
4409 5252 0.179018 GTCCAAACACAGAGCCAGGT 60.179 55.0 0.0 0.0 0.00 4.00 R
5697 6881 0.465460 ACGGCAAACACACTGGTCAT 60.465 50.0 0.0 0.0 0.00 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 4.720530 CCGCTCGGTTTTTGGTATATAC 57.279 45.455 4.14 4.14 0.00 1.47
34 35 3.495753 CCGCTCGGTTTTTGGTATATACC 59.504 47.826 22.97 22.97 46.62 2.73
57 58 7.698628 ACCATAAAAACCAAAATTCAAAACGG 58.301 30.769 0.00 0.00 0.00 4.44
58 59 6.634837 CCATAAAAACCAAAATTCAAAACGGC 59.365 34.615 0.00 0.00 0.00 5.68
59 60 5.629079 AAAAACCAAAATTCAAAACGGCA 57.371 30.435 0.00 0.00 0.00 5.69
60 61 5.826601 AAAACCAAAATTCAAAACGGCAT 57.173 30.435 0.00 0.00 0.00 4.40
61 62 4.809815 AACCAAAATTCAAAACGGCATG 57.190 36.364 0.00 0.00 0.00 4.06
62 63 4.065321 ACCAAAATTCAAAACGGCATGA 57.935 36.364 0.00 0.00 0.00 3.07
63 64 4.446371 ACCAAAATTCAAAACGGCATGAA 58.554 34.783 0.00 2.25 39.66 2.57
64 65 4.878397 ACCAAAATTCAAAACGGCATGAAA 59.122 33.333 0.00 0.00 38.88 2.69
65 66 5.007528 ACCAAAATTCAAAACGGCATGAAAG 59.992 36.000 0.00 0.00 38.88 2.62
66 67 5.007528 CCAAAATTCAAAACGGCATGAAAGT 59.992 36.000 0.00 0.00 38.88 2.66
67 68 6.458070 CCAAAATTCAAAACGGCATGAAAGTT 60.458 34.615 0.00 0.00 38.88 2.66
68 69 6.676237 AAATTCAAAACGGCATGAAAGTTT 57.324 29.167 0.00 2.24 38.88 2.66
69 70 5.905480 ATTCAAAACGGCATGAAAGTTTC 57.095 34.783 8.75 8.75 38.88 2.78
70 71 4.377839 TCAAAACGGCATGAAAGTTTCA 57.622 36.364 20.14 20.14 45.01 2.69
86 87 9.513906 TGAAAGTTTCATACCATACAGAAATCA 57.486 29.630 14.35 0.00 34.08 2.57
93 94 9.913310 TTCATACCATACAGAAATCATAAACCA 57.087 29.630 0.00 0.00 0.00 3.67
102 103 8.980143 ACAGAAATCATAAACCATAAAAACCG 57.020 30.769 0.00 0.00 0.00 4.44
103 104 8.581578 ACAGAAATCATAAACCATAAAAACCGT 58.418 29.630 0.00 0.00 0.00 4.83
115 116 8.455598 ACCATAAAAACCGTAAAATTGATTCG 57.544 30.769 0.00 0.00 0.00 3.34
116 117 7.542824 ACCATAAAAACCGTAAAATTGATTCGG 59.457 33.333 7.67 7.67 45.53 4.30
122 123 4.800784 CCGTAAAATTGATTCGGTTTGGT 58.199 39.130 0.00 0.00 36.99 3.67
123 124 5.224135 CCGTAAAATTGATTCGGTTTGGTT 58.776 37.500 0.00 0.00 36.99 3.67
124 125 5.692654 CCGTAAAATTGATTCGGTTTGGTTT 59.307 36.000 0.00 0.00 36.99 3.27
125 126 6.862090 CCGTAAAATTGATTCGGTTTGGTTTA 59.138 34.615 0.00 0.00 36.99 2.01
126 127 7.542824 CCGTAAAATTGATTCGGTTTGGTTTAT 59.457 33.333 0.00 0.00 36.99 1.40
127 128 8.917655 CGTAAAATTGATTCGGTTTGGTTTATT 58.082 29.630 0.00 0.00 0.00 1.40
130 131 9.554395 AAAATTGATTCGGTTTGGTTTATTTCT 57.446 25.926 0.00 0.00 0.00 2.52
131 132 8.532977 AATTGATTCGGTTTGGTTTATTTCTG 57.467 30.769 0.00 0.00 0.00 3.02
132 133 6.019779 TGATTCGGTTTGGTTTATTTCTGG 57.980 37.500 0.00 0.00 0.00 3.86
133 134 5.536916 TGATTCGGTTTGGTTTATTTCTGGT 59.463 36.000 0.00 0.00 0.00 4.00
134 135 6.715718 TGATTCGGTTTGGTTTATTTCTGGTA 59.284 34.615 0.00 0.00 0.00 3.25
135 136 7.394923 TGATTCGGTTTGGTTTATTTCTGGTAT 59.605 33.333 0.00 0.00 0.00 2.73
136 137 6.503589 TCGGTTTGGTTTATTTCTGGTATG 57.496 37.500 0.00 0.00 0.00 2.39
137 138 5.416326 TCGGTTTGGTTTATTTCTGGTATGG 59.584 40.000 0.00 0.00 0.00 2.74
138 139 5.393678 CGGTTTGGTTTATTTCTGGTATGGG 60.394 44.000 0.00 0.00 0.00 4.00
139 140 5.717654 GGTTTGGTTTATTTCTGGTATGGGA 59.282 40.000 0.00 0.00 0.00 4.37
140 141 6.382859 GGTTTGGTTTATTTCTGGTATGGGAT 59.617 38.462 0.00 0.00 0.00 3.85
141 142 7.093068 GGTTTGGTTTATTTCTGGTATGGGATT 60.093 37.037 0.00 0.00 0.00 3.01
142 143 8.318412 GTTTGGTTTATTTCTGGTATGGGATTT 58.682 33.333 0.00 0.00 0.00 2.17
143 144 7.654022 TGGTTTATTTCTGGTATGGGATTTC 57.346 36.000 0.00 0.00 0.00 2.17
144 145 6.320164 TGGTTTATTTCTGGTATGGGATTTCG 59.680 38.462 0.00 0.00 0.00 3.46
145 146 6.238925 GGTTTATTTCTGGTATGGGATTTCGG 60.239 42.308 0.00 0.00 0.00 4.30
146 147 4.519906 ATTTCTGGTATGGGATTTCGGT 57.480 40.909 0.00 0.00 0.00 4.69
147 148 4.310022 TTTCTGGTATGGGATTTCGGTT 57.690 40.909 0.00 0.00 0.00 4.44
148 149 3.553828 TCTGGTATGGGATTTCGGTTC 57.446 47.619 0.00 0.00 0.00 3.62
149 150 2.159014 TCTGGTATGGGATTTCGGTTCG 60.159 50.000 0.00 0.00 0.00 3.95
150 151 1.134340 TGGTATGGGATTTCGGTTCGG 60.134 52.381 0.00 0.00 0.00 4.30
151 152 1.134310 GGTATGGGATTTCGGTTCGGT 60.134 52.381 0.00 0.00 0.00 4.69
152 153 2.635714 GTATGGGATTTCGGTTCGGTT 58.364 47.619 0.00 0.00 0.00 4.44
153 154 2.209690 ATGGGATTTCGGTTCGGTTT 57.790 45.000 0.00 0.00 0.00 3.27
154 155 1.984066 TGGGATTTCGGTTCGGTTTT 58.016 45.000 0.00 0.00 0.00 2.43
155 156 3.137446 TGGGATTTCGGTTCGGTTTTA 57.863 42.857 0.00 0.00 0.00 1.52
156 157 3.484407 TGGGATTTCGGTTCGGTTTTAA 58.516 40.909 0.00 0.00 0.00 1.52
157 158 3.887716 TGGGATTTCGGTTCGGTTTTAAA 59.112 39.130 0.00 0.00 0.00 1.52
158 159 4.340381 TGGGATTTCGGTTCGGTTTTAAAA 59.660 37.500 0.00 0.00 0.00 1.52
159 160 5.010820 TGGGATTTCGGTTCGGTTTTAAAAT 59.989 36.000 3.52 0.00 0.00 1.82
160 161 6.208204 TGGGATTTCGGTTCGGTTTTAAAATA 59.792 34.615 3.52 0.00 0.00 1.40
161 162 6.527722 GGGATTTCGGTTCGGTTTTAAAATAC 59.472 38.462 3.52 0.06 0.00 1.89
162 163 7.083230 GGATTTCGGTTCGGTTTTAAAATACA 58.917 34.615 3.52 0.00 0.00 2.29
163 164 7.060979 GGATTTCGGTTCGGTTTTAAAATACAC 59.939 37.037 3.52 0.00 0.00 2.90
164 165 5.998454 TCGGTTCGGTTTTAAAATACACA 57.002 34.783 3.52 0.00 0.00 3.72
165 166 5.988092 TCGGTTCGGTTTTAAAATACACAG 58.012 37.500 3.52 1.15 0.00 3.66
166 167 5.049543 TCGGTTCGGTTTTAAAATACACAGG 60.050 40.000 3.52 0.00 0.00 4.00
167 168 5.463286 GGTTCGGTTTTAAAATACACAGGG 58.537 41.667 3.52 0.00 0.00 4.45
168 169 5.009911 GGTTCGGTTTTAAAATACACAGGGT 59.990 40.000 3.52 0.00 0.00 4.34
169 170 5.692613 TCGGTTTTAAAATACACAGGGTG 57.307 39.130 3.52 0.00 39.75 4.61
170 171 5.374921 TCGGTTTTAAAATACACAGGGTGA 58.625 37.500 3.52 0.00 36.96 4.02
171 172 5.470777 TCGGTTTTAAAATACACAGGGTGAG 59.529 40.000 3.52 0.00 36.96 3.51
172 173 5.239963 CGGTTTTAAAATACACAGGGTGAGT 59.760 40.000 3.52 0.00 36.96 3.41
173 174 6.567132 CGGTTTTAAAATACACAGGGTGAGTC 60.567 42.308 3.52 0.00 36.96 3.36
237 241 0.178068 AAATGAGCGCATCCTACGGT 59.822 50.000 11.47 0.00 45.07 4.83
240 244 3.122250 GAGCGCATCCTACGGTCGT 62.122 63.158 11.47 0.69 46.36 4.34
244 248 1.783031 CGCATCCTACGGTCGTAGCT 61.783 60.000 21.07 10.35 44.80 3.32
251 255 0.749454 TACGGTCGTAGCTCCTTCCC 60.749 60.000 0.00 0.00 0.00 3.97
252 256 1.753463 CGGTCGTAGCTCCTTCCCT 60.753 63.158 0.00 0.00 0.00 4.20
253 257 1.726533 CGGTCGTAGCTCCTTCCCTC 61.727 65.000 0.00 0.00 0.00 4.30
254 258 1.393487 GGTCGTAGCTCCTTCCCTCC 61.393 65.000 0.00 0.00 0.00 4.30
255 259 0.683504 GTCGTAGCTCCTTCCCTCCA 60.684 60.000 0.00 0.00 0.00 3.86
256 260 0.395862 TCGTAGCTCCTTCCCTCCAG 60.396 60.000 0.00 0.00 0.00 3.86
257 261 0.684805 CGTAGCTCCTTCCCTCCAGT 60.685 60.000 0.00 0.00 0.00 4.00
258 262 1.574263 GTAGCTCCTTCCCTCCAGTT 58.426 55.000 0.00 0.00 0.00 3.16
259 263 2.748388 GTAGCTCCTTCCCTCCAGTTA 58.252 52.381 0.00 0.00 0.00 2.24
260 264 1.872773 AGCTCCTTCCCTCCAGTTAG 58.127 55.000 0.00 0.00 0.00 2.34
261 265 0.179234 GCTCCTTCCCTCCAGTTAGC 59.821 60.000 0.00 0.00 0.00 3.09
262 266 1.573108 CTCCTTCCCTCCAGTTAGCA 58.427 55.000 0.00 0.00 0.00 3.49
263 267 1.909302 CTCCTTCCCTCCAGTTAGCAA 59.091 52.381 0.00 0.00 0.00 3.91
264 268 1.909302 TCCTTCCCTCCAGTTAGCAAG 59.091 52.381 0.00 0.00 0.00 4.01
265 269 1.065126 CCTTCCCTCCAGTTAGCAAGG 60.065 57.143 0.00 0.00 0.00 3.61
266 270 1.909302 CTTCCCTCCAGTTAGCAAGGA 59.091 52.381 0.00 0.00 0.00 3.36
318 322 1.835121 GGATTCGCGGTAATTTTGCC 58.165 50.000 6.13 0.00 0.00 4.52
347 351 1.332889 GGGATACTCCGGGGTTTCGT 61.333 60.000 15.04 0.00 37.43 3.85
363 367 1.155889 TCGTGGCGAAGAAGTACGTA 58.844 50.000 0.00 0.00 36.28 3.57
364 368 1.135972 TCGTGGCGAAGAAGTACGTAC 60.136 52.381 18.10 18.10 36.28 3.67
365 369 1.135859 CGTGGCGAAGAAGTACGTACT 60.136 52.381 22.45 22.45 38.39 2.73
366 370 2.513893 GTGGCGAAGAAGTACGTACTC 58.486 52.381 27.51 19.62 34.99 2.59
370 374 2.161211 GCGAAGAAGTACGTACTCCACT 59.839 50.000 27.51 21.83 34.99 4.00
430 434 3.026349 CGTAACACGTGAAGCAACTTTG 58.974 45.455 25.01 0.00 36.74 2.77
432 436 1.745232 ACACGTGAAGCAACTTTGGA 58.255 45.000 25.01 0.00 0.00 3.53
433 437 1.400494 ACACGTGAAGCAACTTTGGAC 59.600 47.619 25.01 0.00 0.00 4.02
434 438 1.670811 CACGTGAAGCAACTTTGGACT 59.329 47.619 10.90 0.00 0.00 3.85
435 439 1.670811 ACGTGAAGCAACTTTGGACTG 59.329 47.619 0.00 0.00 0.00 3.51
458 472 1.445518 CAAACAAACCTGCCACCCC 59.554 57.895 0.00 0.00 0.00 4.95
473 487 3.138798 CCCCGTGATCGACCGACT 61.139 66.667 0.00 0.00 39.71 4.18
474 488 2.408022 CCCGTGATCGACCGACTC 59.592 66.667 0.00 0.00 39.71 3.36
475 489 2.022902 CCGTGATCGACCGACTCG 59.977 66.667 0.00 0.00 44.44 4.18
483 497 1.013005 TCGACCGACTCGACTGTCTC 61.013 60.000 6.21 0.00 46.75 3.36
485 499 0.674269 GACCGACTCGACTGTCTCCT 60.674 60.000 6.21 0.00 35.00 3.69
490 527 2.282407 GACTCGACTGTCTCCTACTCC 58.718 57.143 6.21 0.00 34.39 3.85
981 1019 3.151022 CCCCCGAGCCTCACTCTC 61.151 72.222 0.00 0.00 43.85 3.20
982 1020 2.363018 CCCCGAGCCTCACTCTCA 60.363 66.667 0.00 0.00 43.85 3.27
983 1021 2.422231 CCCCGAGCCTCACTCTCAG 61.422 68.421 0.00 0.00 43.85 3.35
984 1022 1.379176 CCCGAGCCTCACTCTCAGA 60.379 63.158 0.00 0.00 43.85 3.27
985 1023 1.383456 CCCGAGCCTCACTCTCAGAG 61.383 65.000 0.00 0.00 43.85 3.35
986 1024 0.393673 CCGAGCCTCACTCTCAGAGA 60.394 60.000 9.27 0.00 43.85 3.10
987 1025 1.458398 CGAGCCTCACTCTCAGAGAA 58.542 55.000 9.27 0.00 43.85 2.87
988 1026 1.401552 CGAGCCTCACTCTCAGAGAAG 59.598 57.143 9.27 5.29 43.85 2.85
989 1027 2.722094 GAGCCTCACTCTCAGAGAAGA 58.278 52.381 9.27 5.06 42.62 2.87
990 1028 3.088532 GAGCCTCACTCTCAGAGAAGAA 58.911 50.000 9.27 0.00 42.62 2.52
991 1029 3.091545 AGCCTCACTCTCAGAGAAGAAG 58.908 50.000 9.27 1.05 35.09 2.85
992 1030 3.088532 GCCTCACTCTCAGAGAAGAAGA 58.911 50.000 9.27 0.00 35.09 2.87
1008 1046 1.133407 GAAGAAGCGACGATGTCTCCT 59.867 52.381 0.00 0.00 0.00 3.69
1093 1138 0.589223 GATCCACACGCGTTTCCAAA 59.411 50.000 10.22 0.00 0.00 3.28
1108 1153 1.203162 TCCAAATCCAATGCTGGTGGT 60.203 47.619 1.49 0.00 43.97 4.16
1148 1193 4.933064 CGCTCGCGGATCACCTCC 62.933 72.222 6.13 0.00 41.07 4.30
1190 1235 0.322546 GCAGGTACCTTCCCCAGTTG 60.323 60.000 13.15 0.00 0.00 3.16
1213 1260 8.394121 GTTGCTAGTATTTTCCAAGAGATTGAG 58.606 37.037 0.00 0.00 0.00 3.02
1228 1275 3.772025 AGATTGAGATCCCTGAGAAACGT 59.228 43.478 0.00 0.00 32.44 3.99
1229 1276 4.956700 AGATTGAGATCCCTGAGAAACGTA 59.043 41.667 0.00 0.00 32.44 3.57
1230 1277 4.451629 TTGAGATCCCTGAGAAACGTAC 57.548 45.455 0.00 0.00 0.00 3.67
1231 1278 2.422479 TGAGATCCCTGAGAAACGTACG 59.578 50.000 15.01 15.01 0.00 3.67
1232 1279 1.749634 AGATCCCTGAGAAACGTACGG 59.250 52.381 21.06 1.43 0.00 4.02
1233 1280 1.475682 GATCCCTGAGAAACGTACGGT 59.524 52.381 21.06 11.03 0.00 4.83
1234 1281 1.331214 TCCCTGAGAAACGTACGGTT 58.669 50.000 20.33 20.33 41.76 4.44
1235 1282 1.000060 TCCCTGAGAAACGTACGGTTG 60.000 52.381 25.57 8.80 39.30 3.77
1251 1298 1.614317 GGTTGGAAGCTGCTGTACCAT 60.614 52.381 18.91 0.00 0.00 3.55
1252 1299 2.355716 GGTTGGAAGCTGCTGTACCATA 60.356 50.000 18.91 10.66 0.00 2.74
1255 1302 2.093500 TGGAAGCTGCTGTACCATAGTG 60.093 50.000 15.84 0.00 0.00 2.74
1259 1306 4.592485 AGCTGCTGTACCATAGTGTATC 57.408 45.455 0.00 0.00 0.00 2.24
1263 1310 3.067601 TGCTGTACCATAGTGTATCCGTG 59.932 47.826 0.00 0.00 0.00 4.94
1265 1312 4.276678 GCTGTACCATAGTGTATCCGTGTA 59.723 45.833 0.00 0.00 0.00 2.90
1266 1313 5.048224 GCTGTACCATAGTGTATCCGTGTAT 60.048 44.000 0.00 0.00 0.00 2.29
1267 1314 6.321848 TGTACCATAGTGTATCCGTGTATG 57.678 41.667 0.00 0.00 0.00 2.39
1268 1315 5.829391 TGTACCATAGTGTATCCGTGTATGT 59.171 40.000 0.00 0.00 0.00 2.29
1269 1316 5.196341 ACCATAGTGTATCCGTGTATGTG 57.804 43.478 0.00 0.00 0.00 3.21
1270 1317 4.647853 ACCATAGTGTATCCGTGTATGTGT 59.352 41.667 0.00 0.00 0.00 3.72
1271 1318 5.220381 CCATAGTGTATCCGTGTATGTGTC 58.780 45.833 0.00 0.00 0.00 3.67
1272 1319 5.009710 CCATAGTGTATCCGTGTATGTGTCT 59.990 44.000 0.00 0.00 0.00 3.41
1273 1320 4.371855 AGTGTATCCGTGTATGTGTCTG 57.628 45.455 0.00 0.00 0.00 3.51
1274 1321 4.014406 AGTGTATCCGTGTATGTGTCTGA 58.986 43.478 0.00 0.00 0.00 3.27
1275 1322 4.096532 AGTGTATCCGTGTATGTGTCTGAG 59.903 45.833 0.00 0.00 0.00 3.35
1276 1323 2.586258 ATCCGTGTATGTGTCTGAGC 57.414 50.000 0.00 0.00 0.00 4.26
1277 1324 0.530744 TCCGTGTATGTGTCTGAGCC 59.469 55.000 0.00 0.00 0.00 4.70
1293 1348 2.890474 CCAGCGGCCGTACATGAC 60.890 66.667 28.70 7.91 0.00 3.06
1294 1349 2.184322 CAGCGGCCGTACATGACT 59.816 61.111 28.70 10.48 0.00 3.41
1304 1359 3.190079 CCGTACATGACTCAGAACCATG 58.810 50.000 0.00 9.17 42.32 3.66
1306 1361 4.245660 CGTACATGACTCAGAACCATGTT 58.754 43.478 17.62 7.07 45.91 2.71
1307 1362 5.407502 CGTACATGACTCAGAACCATGTTA 58.592 41.667 17.62 6.39 45.91 2.41
1308 1363 5.867174 CGTACATGACTCAGAACCATGTTAA 59.133 40.000 17.62 3.98 45.91 2.01
1310 1365 7.064609 CGTACATGACTCAGAACCATGTTAAAT 59.935 37.037 17.62 1.83 45.91 1.40
1312 1367 7.596494 ACATGACTCAGAACCATGTTAAATTG 58.404 34.615 0.00 0.00 45.91 2.32
1314 1369 5.048083 TGACTCAGAACCATGTTAAATTGCC 60.048 40.000 0.00 0.00 0.00 4.52
1315 1370 4.832266 ACTCAGAACCATGTTAAATTGCCA 59.168 37.500 0.00 0.00 0.00 4.92
1316 1371 5.132897 TCAGAACCATGTTAAATTGCCAC 57.867 39.130 0.00 0.00 0.00 5.01
1318 1373 6.007076 TCAGAACCATGTTAAATTGCCACTA 58.993 36.000 0.00 0.00 0.00 2.74
1319 1374 6.072175 TCAGAACCATGTTAAATTGCCACTAC 60.072 38.462 0.00 0.00 0.00 2.73
1321 1376 7.120579 CAGAACCATGTTAAATTGCCACTACTA 59.879 37.037 0.00 0.00 0.00 1.82
1322 1377 6.753107 ACCATGTTAAATTGCCACTACTAC 57.247 37.500 0.00 0.00 0.00 2.73
1323 1378 6.242396 ACCATGTTAAATTGCCACTACTACA 58.758 36.000 0.00 0.00 0.00 2.74
1324 1379 6.374333 ACCATGTTAAATTGCCACTACTACAG 59.626 38.462 0.00 0.00 0.00 2.74
1326 1381 5.309638 TGTTAAATTGCCACTACTACAGCA 58.690 37.500 0.00 0.00 0.00 4.41
1327 1382 5.180492 TGTTAAATTGCCACTACTACAGCAC 59.820 40.000 0.00 0.00 34.37 4.40
1328 1383 2.010145 ATTGCCACTACTACAGCACG 57.990 50.000 0.00 0.00 34.37 5.34
1350 1833 0.961019 TTTTGCACCTAGCTTGGCAG 59.039 50.000 14.60 8.40 45.94 4.85
1380 1863 8.037382 TGCAAATTAAGTGATCTTCTCTTCTG 57.963 34.615 0.00 0.00 33.02 3.02
1387 1870 7.727331 AAGTGATCTTCTCTTCTGTTTCTTG 57.273 36.000 0.00 0.00 0.00 3.02
1388 1871 6.229733 AGTGATCTTCTCTTCTGTTTCTTGG 58.770 40.000 0.00 0.00 0.00 3.61
1389 1872 5.994668 GTGATCTTCTCTTCTGTTTCTTGGT 59.005 40.000 0.00 0.00 0.00 3.67
1390 1873 5.994054 TGATCTTCTCTTCTGTTTCTTGGTG 59.006 40.000 0.00 0.00 0.00 4.17
1391 1874 5.614324 TCTTCTCTTCTGTTTCTTGGTGA 57.386 39.130 0.00 0.00 0.00 4.02
1409 1892 3.807538 GGTGTCCAGCGCATGCAG 61.808 66.667 19.57 11.69 46.23 4.41
1424 1907 3.688673 GCATGCAGAAAGAGCTAGAAACT 59.311 43.478 14.21 0.00 0.00 2.66
1430 1913 5.233263 GCAGAAAGAGCTAGAAACTAATCCG 59.767 44.000 0.00 0.00 0.00 4.18
1434 1917 3.637694 AGAGCTAGAAACTAATCCGGGTC 59.362 47.826 0.00 0.00 0.00 4.46
1510 1994 8.900781 AGAACAATTGAATATCATCTTCCACTG 58.099 33.333 13.59 0.00 0.00 3.66
1511 1995 7.578310 ACAATTGAATATCATCTTCCACTGG 57.422 36.000 13.59 0.00 0.00 4.00
1534 2064 7.404671 GGAACTTTCCAAAATTCATAGCCTA 57.595 36.000 2.93 0.00 46.76 3.93
1536 2066 7.339466 GGAACTTTCCAAAATTCATAGCCTAGA 59.661 37.037 2.93 0.00 46.76 2.43
1537 2067 8.829373 AACTTTCCAAAATTCATAGCCTAGAT 57.171 30.769 0.00 0.00 0.00 1.98
1538 2068 8.230472 ACTTTCCAAAATTCATAGCCTAGATG 57.770 34.615 0.00 0.00 0.00 2.90
1559 2093 7.390027 AGATGCATCTACTTCTGTTAGTGTTT 58.610 34.615 27.73 0.00 34.85 2.83
1560 2094 7.547370 AGATGCATCTACTTCTGTTAGTGTTTC 59.453 37.037 27.73 0.00 34.85 2.78
1561 2095 6.759272 TGCATCTACTTCTGTTAGTGTTTCT 58.241 36.000 0.00 0.00 0.00 2.52
1562 2096 7.892609 TGCATCTACTTCTGTTAGTGTTTCTA 58.107 34.615 0.00 0.00 0.00 2.10
1563 2097 7.813148 TGCATCTACTTCTGTTAGTGTTTCTAC 59.187 37.037 0.00 0.00 0.00 2.59
1564 2098 7.275999 GCATCTACTTCTGTTAGTGTTTCTACC 59.724 40.741 0.00 0.00 0.00 3.18
1565 2099 7.828508 TCTACTTCTGTTAGTGTTTCTACCA 57.171 36.000 0.00 0.00 0.00 3.25
1566 2100 8.418597 TCTACTTCTGTTAGTGTTTCTACCAT 57.581 34.615 0.00 0.00 0.00 3.55
1567 2101 8.867097 TCTACTTCTGTTAGTGTTTCTACCATT 58.133 33.333 0.00 0.00 0.00 3.16
1568 2102 9.490379 CTACTTCTGTTAGTGTTTCTACCATTT 57.510 33.333 0.00 0.00 0.00 2.32
1569 2103 8.747538 ACTTCTGTTAGTGTTTCTACCATTTT 57.252 30.769 0.00 0.00 0.00 1.82
1570 2104 9.185680 ACTTCTGTTAGTGTTTCTACCATTTTT 57.814 29.630 0.00 0.00 0.00 1.94
1607 2141 8.893563 TGTGGTTAATATTTCCATTTCTTCCT 57.106 30.769 12.88 0.00 33.68 3.36
1668 2202 3.886505 TCGGACAACAGCCAATTAAGTTT 59.113 39.130 0.00 0.00 0.00 2.66
1787 2321 2.609459 GTGTGATTACCCGCATCTTCTG 59.391 50.000 0.00 0.00 0.00 3.02
1831 2365 9.841295 TTCCATATTCAGGTAGTAATAAACACC 57.159 33.333 0.00 0.00 32.51 4.16
1832 2366 8.994500 TCCATATTCAGGTAGTAATAAACACCA 58.006 33.333 0.00 0.00 33.91 4.17
1833 2367 9.052759 CCATATTCAGGTAGTAATAAACACCAC 57.947 37.037 0.00 0.00 33.91 4.16
1834 2368 9.607988 CATATTCAGGTAGTAATAAACACCACA 57.392 33.333 0.00 0.00 33.91 4.17
1835 2369 9.832445 ATATTCAGGTAGTAATAAACACCACAG 57.168 33.333 0.00 0.00 33.91 3.66
1836 2370 6.921486 TCAGGTAGTAATAAACACCACAGA 57.079 37.500 0.00 0.00 33.91 3.41
1837 2371 6.694447 TCAGGTAGTAATAAACACCACAGAC 58.306 40.000 0.00 0.00 33.91 3.51
1875 2409 6.515200 GCAAGATGCATTCAGATTCATAAGCT 60.515 38.462 0.00 0.00 44.26 3.74
1876 2410 7.308408 GCAAGATGCATTCAGATTCATAAGCTA 60.308 37.037 0.00 0.00 44.26 3.32
1928 2462 2.016318 TCTGATGCAATAACAAGGGCG 58.984 47.619 0.00 0.00 0.00 6.13
2005 2539 1.680249 GGCAAGATCAGGAACCCAGAC 60.680 57.143 0.00 0.00 0.00 3.51
2031 2565 6.702723 CCTCTTTTGACAAATGCAGAAATGAA 59.297 34.615 0.50 0.00 0.00 2.57
2033 2567 6.479660 TCTTTTGACAAATGCAGAAATGAACC 59.520 34.615 0.50 0.00 0.00 3.62
2035 2569 6.647334 TTGACAAATGCAGAAATGAACCTA 57.353 33.333 0.00 0.00 0.00 3.08
2036 2570 6.258230 TGACAAATGCAGAAATGAACCTAG 57.742 37.500 0.00 0.00 0.00 3.02
2037 2571 6.003326 TGACAAATGCAGAAATGAACCTAGA 58.997 36.000 0.00 0.00 0.00 2.43
2038 2572 6.489700 TGACAAATGCAGAAATGAACCTAGAA 59.510 34.615 0.00 0.00 0.00 2.10
2039 2573 6.681777 ACAAATGCAGAAATGAACCTAGAAC 58.318 36.000 0.00 0.00 0.00 3.01
2040 2574 5.904362 AATGCAGAAATGAACCTAGAACC 57.096 39.130 0.00 0.00 0.00 3.62
2041 2575 3.686016 TGCAGAAATGAACCTAGAACCC 58.314 45.455 0.00 0.00 0.00 4.11
2044 2578 4.807643 GCAGAAATGAACCTAGAACCCACT 60.808 45.833 0.00 0.00 0.00 4.00
2045 2579 5.570844 GCAGAAATGAACCTAGAACCCACTA 60.571 44.000 0.00 0.00 0.00 2.74
2046 2580 6.472887 CAGAAATGAACCTAGAACCCACTAA 58.527 40.000 0.00 0.00 0.00 2.24
2047 2581 6.371825 CAGAAATGAACCTAGAACCCACTAAC 59.628 42.308 0.00 0.00 0.00 2.34
2048 2582 3.947910 TGAACCTAGAACCCACTAACG 57.052 47.619 0.00 0.00 0.00 3.18
2049 2583 2.564062 TGAACCTAGAACCCACTAACGG 59.436 50.000 0.00 0.00 0.00 4.44
2050 2584 2.315720 ACCTAGAACCCACTAACGGT 57.684 50.000 0.00 0.00 34.07 4.83
2054 2588 3.749609 CCTAGAACCCACTAACGGTTTTG 59.250 47.826 0.00 0.00 43.75 2.44
2094 2629 4.895854 GCGGAATGCAATTGCTGT 57.104 50.000 29.37 17.80 43.11 4.40
2161 2696 0.616964 TCCTGACAGATGGAGCAGCT 60.617 55.000 3.32 0.00 0.00 4.24
2267 2802 6.661377 GGAGATATTGTGATCCTCTGCTACTA 59.339 42.308 0.00 0.00 0.00 1.82
2320 3149 4.982999 TCTCATACGCTGTCAAACTACTC 58.017 43.478 0.00 0.00 0.00 2.59
2428 3258 6.240894 ACCACCTAATATGCCATGATAACAG 58.759 40.000 0.00 0.00 0.00 3.16
2604 3434 2.026641 CTTTGCCCGATTCCATCACAT 58.973 47.619 0.00 0.00 0.00 3.21
2747 3578 2.969628 ATCTGCTTTCTCAGGTACCG 57.030 50.000 6.18 1.56 34.91 4.02
2867 3698 2.625790 TGTGGTTGTAAATCCAGGCAAC 59.374 45.455 0.00 0.00 40.08 4.17
3001 3832 5.591877 GTGAAATAGTGGAATTCTGCAGGAT 59.408 40.000 15.13 8.07 0.00 3.24
3159 3990 9.956720 AGAAAATGTTTACACAGATGAAAAGAG 57.043 29.630 0.00 0.00 35.94 2.85
3314 4145 1.542915 ACGCGGCTCTCTTGTTACTTA 59.457 47.619 12.47 0.00 0.00 2.24
3649 4481 3.885901 CCTCCCTTTGCTTAATAAGGAGC 59.114 47.826 10.97 0.00 42.90 4.70
3691 4523 5.943416 TCTTGTATATCAAACCAAGTGTGGG 59.057 40.000 0.00 0.00 39.33 4.61
3710 4542 3.392285 TGGGGTATCATCATCTGTTCCTG 59.608 47.826 0.00 0.00 0.00 3.86
3759 4592 3.314693 TCTGAACTACTGGGGTGAAGTT 58.685 45.455 0.00 0.00 34.96 2.66
3768 4601 4.335416 ACTGGGGTGAAGTTTCATACATG 58.665 43.478 0.00 0.00 39.73 3.21
4006 4839 7.313740 AGGTCAGTAAATATGCATCTCATCT 57.686 36.000 0.19 0.00 36.63 2.90
4009 4842 7.296660 GTCAGTAAATATGCATCTCATCTTGC 58.703 38.462 0.19 0.00 39.33 4.01
4048 4881 4.722220 ACGTTTTAGTTAGCCTCCCTTTT 58.278 39.130 0.00 0.00 0.00 2.27
4081 4914 5.830991 GGAGATGAGTCATACACCTCTTACT 59.169 44.000 5.38 0.00 0.00 2.24
4215 5058 5.132502 TCTGAATGTCACATTGTTGGACTT 58.867 37.500 8.05 0.97 32.84 3.01
4221 5064 5.167121 TGTCACATTGTTGGACTTGTTTTG 58.833 37.500 8.28 0.00 32.84 2.44
4224 5067 5.866633 TCACATTGTTGGACTTGTTTTGTTC 59.133 36.000 0.00 0.00 0.00 3.18
4370 5213 3.009473 ACACCAAGCCAGATGTGTTCTAT 59.991 43.478 0.00 0.00 38.74 1.98
4404 5247 1.234821 TGAAAACACTGGCATCGTCC 58.765 50.000 0.00 0.00 0.00 4.79
4409 5252 1.557099 ACACTGGCATCGTCCTCTTA 58.443 50.000 0.00 0.00 0.00 2.10
4415 5258 0.530870 GCATCGTCCTCTTACCTGGC 60.531 60.000 0.00 0.00 0.00 4.85
4485 5488 4.521256 AGTTGTCTCTGGAACTGACTAGAC 59.479 45.833 0.00 0.00 32.50 2.59
4491 5494 3.252701 TCTGGAACTGACTAGACGTGAAC 59.747 47.826 0.00 0.00 0.00 3.18
4556 5596 1.880027 ACAGGGAGATTTTCGTGTTGC 59.120 47.619 0.00 0.00 0.00 4.17
4661 5701 5.938125 GCAACAGGAGGAGAAAATACAACTA 59.062 40.000 0.00 0.00 0.00 2.24
4668 5708 8.772250 AGGAGGAGAAAATACAACTAATCATCA 58.228 33.333 0.00 0.00 0.00 3.07
4692 5732 3.569250 GCTTTAAGGCGTTCCATGAAA 57.431 42.857 0.00 0.00 33.74 2.69
4736 5776 5.452302 CGATTAAAAGTCGCCAGCTTATTTG 59.548 40.000 0.00 0.00 31.85 2.32
4754 5794 7.809806 GCTTATTTGATCTGTAGCACAACTTTT 59.190 33.333 0.00 0.00 0.00 2.27
4755 5795 9.334693 CTTATTTGATCTGTAGCACAACTTTTC 57.665 33.333 0.00 0.00 0.00 2.29
4761 5801 5.428253 TCTGTAGCACAACTTTTCAAGTCT 58.572 37.500 0.00 0.00 41.91 3.24
4885 5929 9.643693 CTTATCCATTGCACAATAAGAAACTTT 57.356 29.630 9.40 0.00 34.90 2.66
4989 6033 9.330063 TCATGAGTCATGACCTGAATATTTTAC 57.670 33.333 28.18 0.00 44.60 2.01
5000 6044 8.782137 ACCTGAATATTTTACCCAATAATGCT 57.218 30.769 0.00 0.00 0.00 3.79
5001 6045 9.875708 ACCTGAATATTTTACCCAATAATGCTA 57.124 29.630 0.00 0.00 0.00 3.49
5202 6251 2.093341 AGTAGTTGTGTGGTTCCACGTT 60.093 45.455 15.82 3.90 39.60 3.99
5208 6257 2.557056 TGTGTGGTTCCACGTTTCAAAA 59.443 40.909 15.82 0.00 39.60 2.44
5239 6288 0.610174 CTGCCTTGAGGTGCTACTCA 59.390 55.000 6.79 6.79 45.22 3.41
5279 6328 1.710244 TCCCAAGGAGGAAGATTTGCA 59.290 47.619 0.00 0.00 41.22 4.08
5442 6619 9.313118 TGATGTAACTATGTTAGCATGTAACAG 57.687 33.333 18.91 12.45 40.27 3.16
5444 6621 7.100409 TGTAACTATGTTAGCATGTAACAGCA 58.900 34.615 18.91 12.08 40.27 4.41
5553 6730 3.831323 TGAGAATGGTGAATTGGTGTGT 58.169 40.909 0.00 0.00 0.00 3.72
5583 6760 1.480954 GATGAAGGCCCGAGACTAACA 59.519 52.381 0.00 0.00 0.00 2.41
5584 6761 1.568504 TGAAGGCCCGAGACTAACAT 58.431 50.000 0.00 0.00 0.00 2.71
5608 6785 4.380531 GCGAGATATGGAGAAATTGACCA 58.619 43.478 0.00 0.00 38.09 4.02
5686 6870 3.450028 CACTAGAGTGCTGCTTCCC 57.550 57.895 0.00 0.00 39.39 3.97
5687 6871 0.610174 CACTAGAGTGCTGCTTCCCA 59.390 55.000 0.00 0.00 39.39 4.37
5697 6881 8.150827 AGAGTGCTGCTTCCCATATATATAAA 57.849 34.615 0.00 0.00 0.00 1.40
5710 6894 9.739276 CCCATATATATAAATGACCAGTGTGTT 57.261 33.333 0.00 0.00 0.00 3.32
5714 6898 2.888834 AAATGACCAGTGTGTTTGCC 57.111 45.000 0.00 0.00 0.00 4.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 3.495753 GGTATATACCAAAAACCGAGCGG 59.504 47.826 24.46 7.48 45.73 5.52
13 14 4.720530 GGTATATACCAAAAACCGAGCG 57.279 45.455 24.46 0.00 45.73 5.03
31 32 8.827677 CCGTTTTGAATTTTGGTTTTTATGGTA 58.172 29.630 0.00 0.00 0.00 3.25
32 33 7.679875 GCCGTTTTGAATTTTGGTTTTTATGGT 60.680 33.333 0.00 0.00 0.00 3.55
33 34 6.634837 GCCGTTTTGAATTTTGGTTTTTATGG 59.365 34.615 0.00 0.00 0.00 2.74
34 35 7.189512 TGCCGTTTTGAATTTTGGTTTTTATG 58.810 30.769 0.00 0.00 0.00 1.90
35 36 7.321745 TGCCGTTTTGAATTTTGGTTTTTAT 57.678 28.000 0.00 0.00 0.00 1.40
36 37 6.737254 TGCCGTTTTGAATTTTGGTTTTTA 57.263 29.167 0.00 0.00 0.00 1.52
37 38 5.629079 TGCCGTTTTGAATTTTGGTTTTT 57.371 30.435 0.00 0.00 0.00 1.94
38 39 5.355350 TCATGCCGTTTTGAATTTTGGTTTT 59.645 32.000 0.00 0.00 0.00 2.43
39 40 4.878397 TCATGCCGTTTTGAATTTTGGTTT 59.122 33.333 0.00 0.00 0.00 3.27
40 41 4.446371 TCATGCCGTTTTGAATTTTGGTT 58.554 34.783 0.00 0.00 0.00 3.67
41 42 4.065321 TCATGCCGTTTTGAATTTTGGT 57.935 36.364 0.00 0.00 0.00 3.67
42 43 5.007528 ACTTTCATGCCGTTTTGAATTTTGG 59.992 36.000 0.00 0.00 32.27 3.28
43 44 6.046885 ACTTTCATGCCGTTTTGAATTTTG 57.953 33.333 0.00 0.00 32.27 2.44
44 45 6.676237 AACTTTCATGCCGTTTTGAATTTT 57.324 29.167 0.00 0.00 32.27 1.82
45 46 6.314896 TGAAACTTTCATGCCGTTTTGAATTT 59.685 30.769 0.00 0.00 34.08 1.82
46 47 5.814705 TGAAACTTTCATGCCGTTTTGAATT 59.185 32.000 0.00 0.00 34.08 2.17
47 48 5.355596 TGAAACTTTCATGCCGTTTTGAAT 58.644 33.333 0.00 0.00 34.08 2.57
48 49 4.748892 TGAAACTTTCATGCCGTTTTGAA 58.251 34.783 0.00 0.00 34.08 2.69
49 50 4.377839 TGAAACTTTCATGCCGTTTTGA 57.622 36.364 0.00 0.00 34.08 2.69
60 61 9.513906 TGATTTCTGTATGGTATGAAACTTTCA 57.486 29.630 6.67 6.67 45.01 2.69
67 68 9.913310 TGGTTTATGATTTCTGTATGGTATGAA 57.087 29.630 0.00 0.00 0.00 2.57
77 78 8.581578 ACGGTTTTTATGGTTTATGATTTCTGT 58.418 29.630 0.00 0.00 0.00 3.41
78 79 8.980143 ACGGTTTTTATGGTTTATGATTTCTG 57.020 30.769 0.00 0.00 0.00 3.02
89 90 8.917655 CGAATCAATTTTACGGTTTTTATGGTT 58.082 29.630 0.00 0.00 0.00 3.67
90 91 7.542824 CCGAATCAATTTTACGGTTTTTATGGT 59.457 33.333 0.00 0.00 38.97 3.55
91 92 7.890763 CCGAATCAATTTTACGGTTTTTATGG 58.109 34.615 0.00 0.00 38.97 2.74
101 102 6.757026 AAACCAAACCGAATCAATTTTACG 57.243 33.333 0.00 0.00 0.00 3.18
104 105 9.554395 AGAAATAAACCAAACCGAATCAATTTT 57.446 25.926 0.00 0.00 0.00 1.82
105 106 8.987890 CAGAAATAAACCAAACCGAATCAATTT 58.012 29.630 0.00 0.00 0.00 1.82
106 107 7.602265 CCAGAAATAAACCAAACCGAATCAATT 59.398 33.333 0.00 0.00 0.00 2.32
107 108 7.096551 CCAGAAATAAACCAAACCGAATCAAT 58.903 34.615 0.00 0.00 0.00 2.57
108 109 6.041069 ACCAGAAATAAACCAAACCGAATCAA 59.959 34.615 0.00 0.00 0.00 2.57
109 110 5.536916 ACCAGAAATAAACCAAACCGAATCA 59.463 36.000 0.00 0.00 0.00 2.57
110 111 6.020971 ACCAGAAATAAACCAAACCGAATC 57.979 37.500 0.00 0.00 0.00 2.52
111 112 7.363443 CCATACCAGAAATAAACCAAACCGAAT 60.363 37.037 0.00 0.00 0.00 3.34
112 113 6.071840 CCATACCAGAAATAAACCAAACCGAA 60.072 38.462 0.00 0.00 0.00 4.30
113 114 5.416326 CCATACCAGAAATAAACCAAACCGA 59.584 40.000 0.00 0.00 0.00 4.69
114 115 5.393678 CCCATACCAGAAATAAACCAAACCG 60.394 44.000 0.00 0.00 0.00 4.44
115 116 5.717654 TCCCATACCAGAAATAAACCAAACC 59.282 40.000 0.00 0.00 0.00 3.27
116 117 6.844097 TCCCATACCAGAAATAAACCAAAC 57.156 37.500 0.00 0.00 0.00 2.93
117 118 8.442660 AAATCCCATACCAGAAATAAACCAAA 57.557 30.769 0.00 0.00 0.00 3.28
118 119 7.147983 CGAAATCCCATACCAGAAATAAACCAA 60.148 37.037 0.00 0.00 0.00 3.67
119 120 6.320164 CGAAATCCCATACCAGAAATAAACCA 59.680 38.462 0.00 0.00 0.00 3.67
120 121 6.238925 CCGAAATCCCATACCAGAAATAAACC 60.239 42.308 0.00 0.00 0.00 3.27
121 122 6.320418 ACCGAAATCCCATACCAGAAATAAAC 59.680 38.462 0.00 0.00 0.00 2.01
122 123 6.428295 ACCGAAATCCCATACCAGAAATAAA 58.572 36.000 0.00 0.00 0.00 1.40
123 124 6.008696 ACCGAAATCCCATACCAGAAATAA 57.991 37.500 0.00 0.00 0.00 1.40
124 125 5.640158 ACCGAAATCCCATACCAGAAATA 57.360 39.130 0.00 0.00 0.00 1.40
125 126 4.519906 ACCGAAATCCCATACCAGAAAT 57.480 40.909 0.00 0.00 0.00 2.17
126 127 4.266714 GAACCGAAATCCCATACCAGAAA 58.733 43.478 0.00 0.00 0.00 2.52
127 128 3.680475 CGAACCGAAATCCCATACCAGAA 60.680 47.826 0.00 0.00 0.00 3.02
128 129 2.159014 CGAACCGAAATCCCATACCAGA 60.159 50.000 0.00 0.00 0.00 3.86
129 130 2.210116 CGAACCGAAATCCCATACCAG 58.790 52.381 0.00 0.00 0.00 4.00
130 131 1.134340 CCGAACCGAAATCCCATACCA 60.134 52.381 0.00 0.00 0.00 3.25
131 132 1.134310 ACCGAACCGAAATCCCATACC 60.134 52.381 0.00 0.00 0.00 2.73
132 133 2.320745 ACCGAACCGAAATCCCATAC 57.679 50.000 0.00 0.00 0.00 2.39
133 134 3.353370 AAACCGAACCGAAATCCCATA 57.647 42.857 0.00 0.00 0.00 2.74
134 135 2.209690 AAACCGAACCGAAATCCCAT 57.790 45.000 0.00 0.00 0.00 4.00
135 136 1.984066 AAAACCGAACCGAAATCCCA 58.016 45.000 0.00 0.00 0.00 4.37
136 137 4.502171 TTTAAAACCGAACCGAAATCCC 57.498 40.909 0.00 0.00 0.00 3.85
137 138 7.060979 GTGTATTTTAAAACCGAACCGAAATCC 59.939 37.037 1.97 0.00 0.00 3.01
138 139 7.590689 TGTGTATTTTAAAACCGAACCGAAATC 59.409 33.333 1.97 0.00 0.00 2.17
139 140 7.424001 TGTGTATTTTAAAACCGAACCGAAAT 58.576 30.769 1.97 0.00 0.00 2.17
140 141 6.789262 TGTGTATTTTAAAACCGAACCGAAA 58.211 32.000 1.97 0.00 0.00 3.46
141 142 6.369059 TGTGTATTTTAAAACCGAACCGAA 57.631 33.333 1.97 0.00 0.00 4.30
142 143 5.049543 CCTGTGTATTTTAAAACCGAACCGA 60.050 40.000 1.97 0.00 0.00 4.69
143 144 5.148568 CCTGTGTATTTTAAAACCGAACCG 58.851 41.667 1.97 0.00 0.00 4.44
144 145 5.009911 ACCCTGTGTATTTTAAAACCGAACC 59.990 40.000 1.97 0.00 0.00 3.62
145 146 5.916320 CACCCTGTGTATTTTAAAACCGAAC 59.084 40.000 1.97 0.95 0.00 3.95
146 147 5.826737 TCACCCTGTGTATTTTAAAACCGAA 59.173 36.000 1.97 0.00 34.79 4.30
147 148 5.374921 TCACCCTGTGTATTTTAAAACCGA 58.625 37.500 1.97 0.00 34.79 4.69
148 149 5.239963 ACTCACCCTGTGTATTTTAAAACCG 59.760 40.000 1.97 0.00 34.79 4.44
149 150 6.567132 CGACTCACCCTGTGTATTTTAAAACC 60.567 42.308 1.97 0.00 34.79 3.27
150 151 6.368213 CGACTCACCCTGTGTATTTTAAAAC 58.632 40.000 1.97 0.00 34.79 2.43
151 152 5.470777 CCGACTCACCCTGTGTATTTTAAAA 59.529 40.000 2.51 2.51 34.79 1.52
152 153 4.998672 CCGACTCACCCTGTGTATTTTAAA 59.001 41.667 0.00 0.00 34.79 1.52
153 154 4.571919 CCGACTCACCCTGTGTATTTTAA 58.428 43.478 0.00 0.00 34.79 1.52
154 155 3.618019 GCCGACTCACCCTGTGTATTTTA 60.618 47.826 0.00 0.00 34.79 1.52
155 156 2.874457 GCCGACTCACCCTGTGTATTTT 60.874 50.000 0.00 0.00 34.79 1.82
156 157 1.338769 GCCGACTCACCCTGTGTATTT 60.339 52.381 0.00 0.00 34.79 1.40
157 158 0.249398 GCCGACTCACCCTGTGTATT 59.751 55.000 0.00 0.00 34.79 1.89
158 159 1.898154 GCCGACTCACCCTGTGTAT 59.102 57.895 0.00 0.00 34.79 2.29
159 160 2.632544 CGCCGACTCACCCTGTGTA 61.633 63.158 0.00 0.00 34.79 2.90
160 161 3.991051 CGCCGACTCACCCTGTGT 61.991 66.667 0.00 0.00 34.79 3.72
161 162 4.742201 CCGCCGACTCACCCTGTG 62.742 72.222 0.00 0.00 34.45 3.66
162 163 3.873679 TACCGCCGACTCACCCTGT 62.874 63.158 0.00 0.00 0.00 4.00
163 164 2.162338 TTTACCGCCGACTCACCCTG 62.162 60.000 0.00 0.00 0.00 4.45
164 165 1.474332 TTTTACCGCCGACTCACCCT 61.474 55.000 0.00 0.00 0.00 4.34
165 166 1.004679 TTTTACCGCCGACTCACCC 60.005 57.895 0.00 0.00 0.00 4.61
166 167 1.632948 GCTTTTACCGCCGACTCACC 61.633 60.000 0.00 0.00 0.00 4.02
167 168 0.947180 TGCTTTTACCGCCGACTCAC 60.947 55.000 0.00 0.00 0.00 3.51
168 169 0.249953 TTGCTTTTACCGCCGACTCA 60.250 50.000 0.00 0.00 0.00 3.41
169 170 0.165295 GTTGCTTTTACCGCCGACTC 59.835 55.000 0.00 0.00 0.00 3.36
170 171 1.232621 GGTTGCTTTTACCGCCGACT 61.233 55.000 0.00 0.00 0.00 4.18
171 172 1.208358 GGTTGCTTTTACCGCCGAC 59.792 57.895 0.00 0.00 0.00 4.79
172 173 1.227883 TGGTTGCTTTTACCGCCGA 60.228 52.632 0.00 0.00 38.55 5.54
173 174 1.209127 CTGGTTGCTTTTACCGCCG 59.791 57.895 0.00 0.00 38.55 6.46
237 241 0.395862 CTGGAGGGAAGGAGCTACGA 60.396 60.000 0.00 0.00 0.00 3.43
240 244 2.955461 GCTAACTGGAGGGAAGGAGCTA 60.955 54.545 0.00 0.00 0.00 3.32
244 248 1.909302 CTTGCTAACTGGAGGGAAGGA 59.091 52.381 0.00 0.00 0.00 3.36
252 256 0.532573 CTCGCTCCTTGCTAACTGGA 59.467 55.000 0.00 0.00 40.11 3.86
253 257 1.086634 GCTCGCTCCTTGCTAACTGG 61.087 60.000 0.00 0.00 40.11 4.00
254 258 0.108424 AGCTCGCTCCTTGCTAACTG 60.108 55.000 0.00 0.00 40.11 3.16
255 259 0.108424 CAGCTCGCTCCTTGCTAACT 60.108 55.000 0.00 0.00 40.11 2.24
256 260 0.108615 TCAGCTCGCTCCTTGCTAAC 60.109 55.000 0.00 0.00 40.11 2.34
257 261 0.608130 TTCAGCTCGCTCCTTGCTAA 59.392 50.000 0.00 0.00 40.11 3.09
258 262 0.108615 GTTCAGCTCGCTCCTTGCTA 60.109 55.000 0.00 0.00 40.11 3.49
259 263 1.375268 GTTCAGCTCGCTCCTTGCT 60.375 57.895 0.00 0.00 40.11 3.91
260 264 2.394563 GGTTCAGCTCGCTCCTTGC 61.395 63.158 0.00 0.00 38.57 4.01
261 265 2.097038 CGGTTCAGCTCGCTCCTTG 61.097 63.158 0.00 0.00 0.00 3.61
262 266 2.100879 AACGGTTCAGCTCGCTCCTT 62.101 55.000 0.00 0.00 0.00 3.36
263 267 2.574955 AACGGTTCAGCTCGCTCCT 61.575 57.895 0.00 0.00 0.00 3.69
264 268 2.048127 AACGGTTCAGCTCGCTCC 60.048 61.111 0.00 0.00 0.00 4.70
265 269 2.383527 CCAACGGTTCAGCTCGCTC 61.384 63.158 0.00 0.00 0.00 5.03
266 270 2.172483 ATCCAACGGTTCAGCTCGCT 62.172 55.000 0.00 0.00 0.00 4.93
299 303 1.835121 GGCAAAATTACCGCGAATCC 58.165 50.000 8.23 0.00 0.00 3.01
300 304 1.462791 CGGCAAAATTACCGCGAATC 58.537 50.000 8.23 0.00 43.44 2.52
301 305 3.615099 CGGCAAAATTACCGCGAAT 57.385 47.368 8.23 0.00 43.44 3.34
318 322 1.080705 GAGTATCCCCGCCGATTCG 60.081 63.158 0.00 0.00 0.00 3.34
333 337 4.324991 GCCACGAAACCCCGGAGT 62.325 66.667 0.73 0.00 0.00 3.85
341 345 1.123756 CGTACTTCTTCGCCACGAAAC 59.876 52.381 3.84 0.00 45.23 2.78
347 351 1.470098 GGAGTACGTACTTCTTCGCCA 59.530 52.381 27.96 0.00 36.50 5.69
363 367 1.609794 GGGAGTCGGGAAGTGGAGT 60.610 63.158 0.00 0.00 0.00 3.85
364 368 2.711922 CGGGAGTCGGGAAGTGGAG 61.712 68.421 0.00 0.00 34.75 3.86
365 369 2.678934 CGGGAGTCGGGAAGTGGA 60.679 66.667 0.00 0.00 34.75 4.02
399 403 3.674225 CGTGTTACGTACAGCGGTA 57.326 52.632 0.00 0.00 46.52 4.02
430 434 2.293399 CAGGTTTGTTTGGCTACAGTCC 59.707 50.000 0.00 0.00 0.00 3.85
432 436 1.681264 GCAGGTTTGTTTGGCTACAGT 59.319 47.619 0.00 0.00 0.00 3.55
433 437 1.000274 GGCAGGTTTGTTTGGCTACAG 60.000 52.381 0.00 0.00 36.96 2.74
434 438 1.036707 GGCAGGTTTGTTTGGCTACA 58.963 50.000 0.00 0.00 36.96 2.74
435 439 1.036707 TGGCAGGTTTGTTTGGCTAC 58.963 50.000 0.00 0.00 40.23 3.58
443 457 4.596585 CGGGGGTGGCAGGTTTGT 62.597 66.667 0.00 0.00 0.00 2.83
473 487 1.209990 GGAGGAGTAGGAGACAGTCGA 59.790 57.143 0.00 0.00 0.00 4.20
474 488 1.670791 GGAGGAGTAGGAGACAGTCG 58.329 60.000 0.00 0.00 0.00 4.18
475 489 1.285373 TGGGAGGAGTAGGAGACAGTC 59.715 57.143 0.00 0.00 0.00 3.51
476 490 1.286553 CTGGGAGGAGTAGGAGACAGT 59.713 57.143 0.00 0.00 0.00 3.55
477 491 1.410932 CCTGGGAGGAGTAGGAGACAG 60.411 61.905 0.00 0.00 37.67 3.51
478 492 0.631753 CCTGGGAGGAGTAGGAGACA 59.368 60.000 0.00 0.00 37.67 3.41
479 493 0.757561 GCCTGGGAGGAGTAGGAGAC 60.758 65.000 0.00 0.00 37.67 3.36
480 494 1.621377 GCCTGGGAGGAGTAGGAGA 59.379 63.158 0.00 0.00 37.67 3.71
483 497 2.840102 CGGCCTGGGAGGAGTAGG 60.840 72.222 0.00 0.00 37.67 3.18
969 1007 2.722094 TCTTCTCTGAGAGTGAGGCTC 58.278 52.381 9.62 7.79 44.45 4.70
970 1008 2.897271 TCTTCTCTGAGAGTGAGGCT 57.103 50.000 9.62 0.00 32.78 4.58
971 1009 3.088532 TCTTCTTCTCTGAGAGTGAGGC 58.911 50.000 9.62 0.00 32.78 4.70
972 1010 4.380867 GCTTCTTCTTCTCTGAGAGTGAGG 60.381 50.000 9.62 9.59 32.78 3.86
973 1011 4.672542 CGCTTCTTCTTCTCTGAGAGTGAG 60.673 50.000 9.62 9.00 0.00 3.51
974 1012 3.190327 CGCTTCTTCTTCTCTGAGAGTGA 59.810 47.826 9.62 6.60 0.00 3.41
975 1013 3.190327 TCGCTTCTTCTTCTCTGAGAGTG 59.810 47.826 9.62 4.29 0.00 3.51
976 1014 3.190535 GTCGCTTCTTCTTCTCTGAGAGT 59.809 47.826 9.62 0.00 0.00 3.24
977 1015 3.727673 CGTCGCTTCTTCTTCTCTGAGAG 60.728 52.174 7.52 2.28 0.00 3.20
978 1016 2.160615 CGTCGCTTCTTCTTCTCTGAGA 59.839 50.000 2.58 2.58 0.00 3.27
979 1017 2.160615 TCGTCGCTTCTTCTTCTCTGAG 59.839 50.000 0.00 0.00 0.00 3.35
980 1018 2.152016 TCGTCGCTTCTTCTTCTCTGA 58.848 47.619 0.00 0.00 0.00 3.27
981 1019 2.620779 TCGTCGCTTCTTCTTCTCTG 57.379 50.000 0.00 0.00 0.00 3.35
982 1020 2.490115 ACATCGTCGCTTCTTCTTCTCT 59.510 45.455 0.00 0.00 0.00 3.10
983 1021 2.849473 GACATCGTCGCTTCTTCTTCTC 59.151 50.000 0.00 0.00 0.00 2.87
984 1022 2.490115 AGACATCGTCGCTTCTTCTTCT 59.510 45.455 0.00 0.00 37.67 2.85
985 1023 2.849473 GAGACATCGTCGCTTCTTCTTC 59.151 50.000 0.00 0.00 37.67 2.87
986 1024 2.416162 GGAGACATCGTCGCTTCTTCTT 60.416 50.000 0.00 0.00 37.67 2.52
987 1025 1.133407 GGAGACATCGTCGCTTCTTCT 59.867 52.381 0.00 0.00 37.67 2.85
988 1026 1.133407 AGGAGACATCGTCGCTTCTTC 59.867 52.381 0.00 0.00 37.67 2.87
989 1027 1.135257 CAGGAGACATCGTCGCTTCTT 60.135 52.381 0.00 0.00 37.67 2.52
990 1028 0.453793 CAGGAGACATCGTCGCTTCT 59.546 55.000 0.00 0.00 37.67 2.85
991 1029 1.142778 GCAGGAGACATCGTCGCTTC 61.143 60.000 0.00 0.00 37.67 3.86
992 1030 1.153745 GCAGGAGACATCGTCGCTT 60.154 57.895 0.00 0.00 37.67 4.68
1108 1153 2.010582 GCACCTGCAAAACCAACCGA 62.011 55.000 0.00 0.00 41.59 4.69
1190 1235 8.900983 ATCTCAATCTCTTGGAAAATACTAGC 57.099 34.615 0.00 0.00 32.95 3.42
1213 1260 1.475682 ACCGTACGTTTCTCAGGGATC 59.524 52.381 15.21 0.00 0.00 3.36
1228 1275 0.970640 TACAGCAGCTTCCAACCGTA 59.029 50.000 0.00 0.00 0.00 4.02
1229 1276 0.602905 GTACAGCAGCTTCCAACCGT 60.603 55.000 0.00 0.00 0.00 4.83
1230 1277 1.298859 GGTACAGCAGCTTCCAACCG 61.299 60.000 0.00 0.00 0.00 4.44
1231 1278 0.250727 TGGTACAGCAGCTTCCAACC 60.251 55.000 7.94 6.74 0.00 3.77
1232 1279 3.322514 TGGTACAGCAGCTTCCAAC 57.677 52.632 7.94 0.00 0.00 3.77
1251 1298 5.187687 TCAGACACATACACGGATACACTA 58.812 41.667 0.00 0.00 0.00 2.74
1252 1299 4.014406 TCAGACACATACACGGATACACT 58.986 43.478 0.00 0.00 0.00 3.55
1255 1302 3.372954 GCTCAGACACATACACGGATAC 58.627 50.000 0.00 0.00 0.00 2.24
1259 1306 0.246360 TGGCTCAGACACATACACGG 59.754 55.000 0.00 0.00 0.00 4.94
1263 1310 0.807667 CCGCTGGCTCAGACACATAC 60.808 60.000 6.40 0.00 32.44 2.39
1265 1312 2.267006 CCGCTGGCTCAGACACAT 59.733 61.111 6.40 0.00 32.44 3.21
1266 1313 4.687215 GCCGCTGGCTCAGACACA 62.687 66.667 11.61 0.00 46.69 3.72
1276 1323 2.890474 GTCATGTACGGCCGCTGG 60.890 66.667 28.58 10.98 0.00 4.85
1277 1324 1.878522 GAGTCATGTACGGCCGCTG 60.879 63.158 28.58 17.74 0.00 5.18
1293 1348 5.047802 AGTGGCAATTTAACATGGTTCTGAG 60.048 40.000 0.00 0.00 0.00 3.35
1294 1349 4.832266 AGTGGCAATTTAACATGGTTCTGA 59.168 37.500 0.00 0.00 0.00 3.27
1304 1359 5.628134 GTGCTGTAGTAGTGGCAATTTAAC 58.372 41.667 0.00 0.00 36.43 2.01
1305 1360 4.390603 CGTGCTGTAGTAGTGGCAATTTAA 59.609 41.667 0.00 0.00 36.43 1.52
1306 1361 3.930229 CGTGCTGTAGTAGTGGCAATTTA 59.070 43.478 0.00 0.00 36.43 1.40
1307 1362 2.742053 CGTGCTGTAGTAGTGGCAATTT 59.258 45.455 0.00 0.00 36.43 1.82
1308 1363 2.289444 ACGTGCTGTAGTAGTGGCAATT 60.289 45.455 0.00 0.00 36.43 2.32
1310 1365 0.677288 ACGTGCTGTAGTAGTGGCAA 59.323 50.000 0.00 0.00 36.43 4.52
1312 1367 2.865343 ATACGTGCTGTAGTAGTGGC 57.135 50.000 0.00 0.00 36.25 5.01
1314 1369 4.387559 TGCAAAATACGTGCTGTAGTAGTG 59.612 41.667 0.00 0.00 42.69 2.74
1315 1370 4.387862 GTGCAAAATACGTGCTGTAGTAGT 59.612 41.667 0.00 0.00 42.69 2.73
1316 1371 4.201685 GGTGCAAAATACGTGCTGTAGTAG 60.202 45.833 0.00 0.00 42.69 2.57
1318 1373 2.482721 GGTGCAAAATACGTGCTGTAGT 59.517 45.455 0.00 0.00 42.69 2.73
1319 1374 2.742053 AGGTGCAAAATACGTGCTGTAG 59.258 45.455 0.00 0.00 42.69 2.74
1321 1376 1.604604 AGGTGCAAAATACGTGCTGT 58.395 45.000 0.00 0.00 42.69 4.40
1322 1377 2.476185 GCTAGGTGCAAAATACGTGCTG 60.476 50.000 0.00 0.00 42.69 4.41
1323 1378 1.737793 GCTAGGTGCAAAATACGTGCT 59.262 47.619 0.00 0.00 42.69 4.40
1324 1379 1.737793 AGCTAGGTGCAAAATACGTGC 59.262 47.619 0.00 0.00 45.94 5.34
1326 1381 2.747446 CCAAGCTAGGTGCAAAATACGT 59.253 45.455 0.00 0.00 45.94 3.57
1327 1382 2.477863 GCCAAGCTAGGTGCAAAATACG 60.478 50.000 0.00 0.00 45.94 3.06
1328 1383 2.491693 TGCCAAGCTAGGTGCAAAATAC 59.508 45.455 4.60 0.00 45.94 1.89
1350 1833 8.838365 AGAGAAGATCACTTAATTTGCATGATC 58.162 33.333 13.80 13.80 43.92 2.92
1380 1863 2.222027 CTGGACACCTCACCAAGAAAC 58.778 52.381 0.00 0.00 35.67 2.78
1387 1870 3.612247 ATGCGCTGGACACCTCACC 62.612 63.158 9.73 0.00 0.00 4.02
1388 1871 2.046892 ATGCGCTGGACACCTCAC 60.047 61.111 9.73 0.00 0.00 3.51
1389 1872 2.046988 CATGCGCTGGACACCTCA 60.047 61.111 9.73 0.00 0.00 3.86
1390 1873 3.503363 GCATGCGCTGGACACCTC 61.503 66.667 9.73 0.00 34.30 3.85
1391 1874 4.334118 TGCATGCGCTGGACACCT 62.334 61.111 14.09 0.00 39.64 4.00
1409 1892 5.051153 CCCGGATTAGTTTCTAGCTCTTTC 58.949 45.833 0.73 0.00 0.00 2.62
1434 1917 6.591750 ACATACCTCATCGAAAGGGTATAG 57.408 41.667 18.46 15.86 41.42 1.31
1446 1929 5.923204 AGATTCACTGGAACATACCTCATC 58.077 41.667 0.00 0.00 38.20 2.92
1485 1969 8.133627 CCAGTGGAAGATGATATTCAATTGTTC 58.866 37.037 1.68 0.00 0.00 3.18
1511 1995 8.281212 TCTAGGCTATGAATTTTGGAAAGTTC 57.719 34.615 0.00 1.50 35.81 3.01
1520 2050 8.381636 AGTAGATGCATCTAGGCTATGAATTTT 58.618 33.333 32.02 7.79 39.87 1.82
1528 2058 5.389520 ACAGAAGTAGATGCATCTAGGCTA 58.610 41.667 32.02 13.84 39.87 3.93
1534 2064 6.537453 ACACTAACAGAAGTAGATGCATCT 57.463 37.500 30.85 30.85 40.86 2.90
1536 2066 7.390027 AGAAACACTAACAGAAGTAGATGCAT 58.610 34.615 0.00 0.00 0.00 3.96
1537 2067 6.759272 AGAAACACTAACAGAAGTAGATGCA 58.241 36.000 0.00 0.00 0.00 3.96
1538 2068 7.275999 GGTAGAAACACTAACAGAAGTAGATGC 59.724 40.741 0.00 0.00 38.55 3.91
1571 2105 9.027202 GGAAATATTAACCACAGTAAAAAGGGA 57.973 33.333 6.70 0.00 0.00 4.20
1572 2106 8.808092 TGGAAATATTAACCACAGTAAAAAGGG 58.192 33.333 9.37 0.00 0.00 3.95
1607 2141 8.428852 TGCTAAGGTTGCAATAGATTATCTACA 58.571 33.333 0.59 0.00 37.51 2.74
1668 2202 0.768622 AATCACCCACCTCACGGAAA 59.231 50.000 0.00 0.00 0.00 3.13
1787 2321 4.628074 TGGAACTAGTTACACTGCAGTTC 58.372 43.478 18.94 8.78 40.50 3.01
1820 2354 5.703592 TGATGTGGTCTGTGGTGTTTATTAC 59.296 40.000 0.00 0.00 0.00 1.89
1824 2358 3.847671 TGATGTGGTCTGTGGTGTTTA 57.152 42.857 0.00 0.00 0.00 2.01
1825 2359 2.727123 TGATGTGGTCTGTGGTGTTT 57.273 45.000 0.00 0.00 0.00 2.83
1827 2361 3.519107 TCATATGATGTGGTCTGTGGTGT 59.481 43.478 0.00 0.00 0.00 4.16
1831 2365 3.800531 TGCTCATATGATGTGGTCTGTG 58.199 45.455 5.72 0.00 0.00 3.66
1832 2366 4.162888 TCTTGCTCATATGATGTGGTCTGT 59.837 41.667 5.72 0.00 0.00 3.41
1833 2367 4.700700 TCTTGCTCATATGATGTGGTCTG 58.299 43.478 5.72 0.00 0.00 3.51
1834 2368 5.306394 CATCTTGCTCATATGATGTGGTCT 58.694 41.667 5.72 0.00 33.65 3.85
1835 2369 4.083431 GCATCTTGCTCATATGATGTGGTC 60.083 45.833 5.72 0.00 40.96 4.02
1836 2370 3.819337 GCATCTTGCTCATATGATGTGGT 59.181 43.478 5.72 0.00 40.96 4.16
1837 2371 3.818773 TGCATCTTGCTCATATGATGTGG 59.181 43.478 5.72 0.00 45.31 4.17
1928 2462 4.526650 GGAATGAGGTCTAGAATCTCCCTC 59.473 50.000 16.06 16.06 41.69 4.30
2005 2539 4.589216 TTCTGCATTTGTCAAAAGAGGG 57.411 40.909 1.31 0.00 0.00 4.30
2031 2565 2.315720 ACCGTTAGTGGGTTCTAGGT 57.684 50.000 0.00 0.00 32.70 3.08
2033 2567 4.450080 GTCAAAACCGTTAGTGGGTTCTAG 59.550 45.833 0.00 0.00 46.75 2.43
2035 2569 3.208594 GTCAAAACCGTTAGTGGGTTCT 58.791 45.455 0.00 0.00 46.75 3.01
2036 2570 2.291465 GGTCAAAACCGTTAGTGGGTTC 59.709 50.000 0.00 0.00 46.75 3.62
2038 2572 1.971481 GGTCAAAACCGTTAGTGGGT 58.029 50.000 0.00 0.00 40.20 4.51
2161 2696 1.539496 GGATCAAATAGTACCGGCGCA 60.539 52.381 10.83 0.00 0.00 6.09
2267 2802 0.700564 ACATTGTCAGGATGCCCAGT 59.299 50.000 0.00 0.00 34.76 4.00
2405 3235 5.649395 CCTGTTATCATGGCATATTAGGTGG 59.351 44.000 0.00 0.00 0.00 4.61
2428 3258 4.009675 TGGATGTTTAGTGACATTGCTCC 58.990 43.478 0.00 0.00 40.21 4.70
2604 3434 4.640201 GCCATTGAGCTTGTATACAGGAAA 59.360 41.667 18.42 9.32 0.00 3.13
2747 3578 5.163437 ACCTCCTGATTCGTCAAGGTAATAC 60.163 44.000 1.05 0.00 35.41 1.89
2867 3698 1.056660 AACACACCTGTCCAGTAGGG 58.943 55.000 0.00 0.00 39.71 3.53
2876 3707 4.021456 TCGATGATCAGTAAACACACCTGT 60.021 41.667 0.09 0.00 0.00 4.00
3001 3832 6.119536 TCTGCTAGAAGAACAAGGTTTTCAA 58.880 36.000 0.00 0.00 0.00 2.69
3068 3899 8.974408 GGTTACATACACAAAATTCAAGGAAAC 58.026 33.333 0.00 0.00 0.00 2.78
3314 4145 9.853177 CATACTTCCCCTTCTCATTTTTATAGT 57.147 33.333 0.00 0.00 0.00 2.12
3649 4481 4.798907 ACAAGAAATACAGTATGCGAGACG 59.201 41.667 0.00 0.00 42.53 4.18
3691 4523 5.529060 GGAAACAGGAACAGATGATGATACC 59.471 44.000 0.00 0.00 0.00 2.73
3710 4542 7.272037 TCAGATTACTTGGAACTTTGGAAAC 57.728 36.000 0.00 0.00 0.00 2.78
3759 4592 5.105797 GGAGAATTTGTGGTGCATGTATGAA 60.106 40.000 0.00 0.00 0.00 2.57
3768 4601 2.083774 TCGATGGAGAATTTGTGGTGC 58.916 47.619 0.00 0.00 0.00 5.01
4036 4869 1.742308 ACCTGACAAAAGGGAGGCTA 58.258 50.000 0.00 0.00 42.11 3.93
4048 4881 2.608623 TGACTCATCTCCAACCTGACA 58.391 47.619 0.00 0.00 0.00 3.58
4081 4914 3.634397 AATGCGATCTCTTTCTTCCCA 57.366 42.857 0.00 0.00 0.00 4.37
4215 5058 1.411977 CACCATGGCCTGAACAAAACA 59.588 47.619 13.04 0.00 0.00 2.83
4221 5064 2.345760 CCTGCACCATGGCCTGAAC 61.346 63.158 13.04 0.00 0.00 3.18
4325 5168 3.446570 GCCTCAGCAGCCGCAATT 61.447 61.111 0.00 0.00 42.27 2.32
4404 5247 3.070018 CAAACACAGAGCCAGGTAAGAG 58.930 50.000 0.00 0.00 0.00 2.85
4409 5252 0.179018 GTCCAAACACAGAGCCAGGT 60.179 55.000 0.00 0.00 0.00 4.00
4415 5258 3.310774 CACTCACTTGTCCAAACACAGAG 59.689 47.826 0.00 0.00 34.35 3.35
4453 5296 8.762645 TCAGTTCCAGAGACAACTATATCAAAT 58.237 33.333 0.00 0.00 31.41 2.32
4460 5303 6.376018 GTCTAGTCAGTTCCAGAGACAACTAT 59.624 42.308 0.00 0.00 34.71 2.12
4463 5466 4.614078 CGTCTAGTCAGTTCCAGAGACAAC 60.614 50.000 0.00 0.00 34.32 3.32
4468 5471 3.075148 TCACGTCTAGTCAGTTCCAGAG 58.925 50.000 0.00 0.00 0.00 3.35
4485 5488 8.888579 ATATAAGTTCCTATCTTTGGTTCACG 57.111 34.615 0.00 0.00 0.00 4.35
4537 5540 2.154462 AGCAACACGAAAATCTCCCTG 58.846 47.619 0.00 0.00 0.00 4.45
4538 5541 2.568623 AGCAACACGAAAATCTCCCT 57.431 45.000 0.00 0.00 0.00 4.20
4539 5542 4.636206 AGAATAGCAACACGAAAATCTCCC 59.364 41.667 0.00 0.00 0.00 4.30
4568 5608 7.952101 CAGAGTATAAACACAGAAACGAACATG 59.048 37.037 0.00 0.00 0.00 3.21
4692 5732 3.751175 TCGCGAAATTCTTCCATGAAAGT 59.249 39.130 6.20 0.00 0.00 2.66
4885 5929 7.757624 GCACACCGAATAGGATTTTAAATTGAA 59.242 33.333 0.00 0.00 45.00 2.69
4893 5937 3.686016 ACAGCACACCGAATAGGATTTT 58.314 40.909 0.00 0.00 45.00 1.82
4900 5944 4.752661 GGTTTTTACAGCACACCGAATA 57.247 40.909 0.00 0.00 0.00 1.75
4905 5949 1.265905 CCTCGGTTTTTACAGCACACC 59.734 52.381 0.00 0.00 0.00 4.16
4988 6032 6.561519 ACTCTTGTACTAGCATTATTGGGT 57.438 37.500 0.00 0.00 0.00 4.51
4989 6033 8.421784 TCTAACTCTTGTACTAGCATTATTGGG 58.578 37.037 0.00 0.00 0.00 4.12
5001 6045 8.068380 GCAAATTCGTTTTCTAACTCTTGTACT 58.932 33.333 0.00 0.00 31.89 2.73
5002 6046 7.322938 GGCAAATTCGTTTTCTAACTCTTGTAC 59.677 37.037 0.00 0.00 31.89 2.90
5019 6064 5.463061 CCTATTAAATTGGCAGGCAAATTCG 59.537 40.000 14.29 2.04 28.97 3.34
5239 6288 4.262808 GGGACTATGATTGCAGCAGTAGAT 60.263 45.833 0.00 0.00 0.00 1.98
5300 6349 0.539051 CTGGATTCGGAACTGGAGCT 59.461 55.000 0.00 0.00 0.00 4.09
5369 6418 2.218603 CTTTTGGCACGAACAGGTACT 58.781 47.619 0.00 0.00 43.88 2.73
5442 6619 7.435068 TCCTTCAGATTACTAAAAACAGTGC 57.565 36.000 0.00 0.00 0.00 4.40
5444 6621 9.403583 TGTTTCCTTCAGATTACTAAAAACAGT 57.596 29.630 0.00 0.00 32.26 3.55
5453 6630 9.533831 AAAATATGGTGTTTCCTTCAGATTACT 57.466 29.630 0.00 0.00 37.07 2.24
5485 6662 3.449746 TTTGTCCTCATAAACCTGGGG 57.550 47.619 0.00 0.00 38.21 4.96
5553 6730 1.304282 GCCTTCATCCAAGCCCTCA 59.696 57.895 0.00 0.00 0.00 3.86
5583 6760 4.999950 GTCAATTTCTCCATATCTCGCCAT 59.000 41.667 0.00 0.00 0.00 4.40
5584 6761 4.380531 GTCAATTTCTCCATATCTCGCCA 58.619 43.478 0.00 0.00 0.00 5.69
5670 6854 5.674052 ATATATGGGAAGCAGCACTCTAG 57.326 43.478 0.00 0.00 0.00 2.43
5671 6855 8.838649 TTATATATATGGGAAGCAGCACTCTA 57.161 34.615 5.44 0.00 0.00 2.43
5678 6862 9.334947 CTGGTCATTTATATATATGGGAAGCAG 57.665 37.037 11.75 12.57 0.00 4.24
5679 6863 8.835734 ACTGGTCATTTATATATATGGGAAGCA 58.164 33.333 11.75 8.38 0.00 3.91
5680 6864 9.113838 CACTGGTCATTTATATATATGGGAAGC 57.886 37.037 11.75 5.08 0.00 3.86
5682 6866 9.958180 CACACTGGTCATTTATATATATGGGAA 57.042 33.333 11.75 0.00 0.00 3.97
5684 6868 9.739276 AACACACTGGTCATTTATATATATGGG 57.261 33.333 11.75 4.92 0.00 4.00
5697 6881 0.465460 ACGGCAAACACACTGGTCAT 60.465 50.000 0.00 0.00 0.00 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.