Multiple sequence alignment - TraesCS5D01G070200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G070200 chr5D 100.000 4884 0 0 693 5576 68088267 68093150 0.000000e+00 9020.0
1 TraesCS5D01G070200 chr5D 87.730 2820 211 53 693 3430 68229155 68231921 0.000000e+00 3166.0
2 TraesCS5D01G070200 chr5D 90.512 1876 108 25 3689 5552 68232789 68234606 0.000000e+00 2414.0
3 TraesCS5D01G070200 chr5D 100.000 349 0 0 1 349 68087575 68087923 0.000000e+00 645.0
4 TraesCS5D01G070200 chr5D 91.018 167 10 3 3417 3579 68232561 68232726 2.610000e-53 220.0
5 TraesCS5D01G070200 chr5D 94.400 125 3 1 163 283 68228914 68229038 7.370000e-44 189.0
6 TraesCS5D01G070200 chr5D 85.393 89 10 3 3893 3980 68233083 68232997 7.690000e-14 89.8
7 TraesCS5D01G070200 chr5B 86.757 2809 241 48 698 3426 74146316 74149073 0.000000e+00 3005.0
8 TraesCS5D01G070200 chr5B 91.864 1524 86 13 3689 5200 74151073 74152570 0.000000e+00 2093.0
9 TraesCS5D01G070200 chr5B 90.254 236 17 4 5311 5542 74152621 74152854 2.520000e-78 303.0
10 TraesCS5D01G070200 chr5B 91.489 141 7 3 3443 3579 74150871 74151010 7.370000e-44 189.0
11 TraesCS5D01G070200 chr5B 90.972 144 5 2 161 296 74145989 74146132 2.650000e-43 187.0
12 TraesCS5D01G070200 chr5A 88.938 2034 167 26 1419 3430 55335173 55333176 0.000000e+00 2457.0
13 TraesCS5D01G070200 chr5A 89.219 1614 95 29 3978 5565 55332332 55330772 0.000000e+00 1943.0
14 TraesCS5D01G070200 chr5A 83.376 782 60 27 693 1418 55336094 55335327 0.000000e+00 660.0
15 TraesCS5D01G070200 chr5A 93.450 229 9 5 3691 3914 55332560 55332333 8.950000e-88 335.0
16 TraesCS5D01G070200 chr5A 97.561 164 4 0 145 308 55336701 55336538 1.180000e-71 281.0
17 TraesCS5D01G070200 chr5A 90.854 164 10 5 3420 3579 55332793 55332631 1.220000e-51 215.0
18 TraesCS5D01G070200 chr6A 90.698 86 7 1 3895 3979 609314535 609314450 4.570000e-21 113.0
19 TraesCS5D01G070200 chr2A 89.362 94 4 6 3890 3979 16294667 16294758 4.570000e-21 113.0
20 TraesCS5D01G070200 chr2D 88.764 89 5 5 3894 3979 189295366 189295280 2.750000e-18 104.0
21 TraesCS5D01G070200 chr3B 85.417 96 13 1 3894 3988 99080213 99080308 1.280000e-16 99.0
22 TraesCS5D01G070200 chr2B 84.783 92 9 5 3894 3982 104255252 104255341 2.770000e-13 87.9
23 TraesCS5D01G070200 chr1A 83.158 95 11 4 3897 3989 6156427 6156336 1.290000e-11 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G070200 chr5D 68087575 68093150 5575 False 4832.500000 9020 100.000000 1 5576 2 chr5D.!!$F1 5575
1 TraesCS5D01G070200 chr5D 68228914 68234606 5692 False 1497.250000 3166 90.915000 163 5552 4 chr5D.!!$F2 5389
2 TraesCS5D01G070200 chr5B 74145989 74152854 6865 False 1155.400000 3005 90.267200 161 5542 5 chr5B.!!$F1 5381
3 TraesCS5D01G070200 chr5A 55330772 55336701 5929 True 981.833333 2457 90.566333 145 5565 6 chr5A.!!$R1 5420

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
127 128 0.099436 GAACATGGACGCTGGCATTC 59.901 55.0 0.00 0.00 0.00 2.67 F
717 804 0.108615 CCTGCGAGTTTCAGATCCGT 60.109 55.0 0.00 0.00 33.54 4.69 F
2118 2449 0.381089 GCTAGTACCGATGTGAGCGT 59.619 55.0 0.00 0.00 0.00 5.07 F
2304 2637 0.105709 TGATCCTGTCTCCCCGCATA 60.106 55.0 0.00 0.00 0.00 3.14 F
3289 3627 0.110295 TTTCAGGCTGGCTGCTGTTA 59.890 50.0 24.83 5.92 42.39 2.41 F
4123 6333 0.692476 TGTACCAGGCTGCTTCATGT 59.308 50.0 9.56 2.85 0.00 3.21 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2102 2433 0.179171 CGAACGCTCACATCGGTACT 60.179 55.0 0.00 0.00 33.15 2.73 R
2292 2624 0.108615 CATCGGATATGCGGGGAGAC 60.109 60.0 16.98 0.00 0.00 3.36 R
4045 6255 0.036671 ACTAAACGCCAGCCCTGTAC 60.037 55.0 0.00 0.00 0.00 2.90 R
4143 6353 0.249615 GACTCGCTATCTGGCATGCA 60.250 55.0 21.36 4.79 0.00 3.96 R
4144 6354 0.249615 TGACTCGCTATCTGGCATGC 60.250 55.0 9.90 9.90 0.00 4.06 R
5374 7600 1.190643 TGTCCAGTGACATGGCGATA 58.809 50.0 0.00 0.00 46.40 2.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 2.977405 GTGTCCACGTACGTTAGAGT 57.023 50.000 20.23 0.00 0.00 3.24
25 26 2.578495 GTGTCCACGTACGTTAGAGTG 58.422 52.381 20.23 6.23 0.00 3.51
28 29 2.253392 CCACGTACGTTAGAGTGGTC 57.747 55.000 20.23 0.00 46.52 4.02
29 30 1.464687 CCACGTACGTTAGAGTGGTCG 60.465 57.143 20.23 2.97 46.52 4.79
30 31 0.798776 ACGTACGTTAGAGTGGTCGG 59.201 55.000 16.72 0.00 0.00 4.79
31 32 1.078709 CGTACGTTAGAGTGGTCGGA 58.921 55.000 7.22 0.00 0.00 4.55
32 33 1.667724 CGTACGTTAGAGTGGTCGGAT 59.332 52.381 7.22 0.00 0.00 4.18
33 34 2.096496 CGTACGTTAGAGTGGTCGGATT 59.904 50.000 7.22 0.00 0.00 3.01
34 35 3.426695 CGTACGTTAGAGTGGTCGGATTT 60.427 47.826 7.22 0.00 0.00 2.17
35 36 2.955614 ACGTTAGAGTGGTCGGATTTG 58.044 47.619 0.00 0.00 0.00 2.32
36 37 1.659098 CGTTAGAGTGGTCGGATTTGC 59.341 52.381 0.00 0.00 0.00 3.68
37 38 2.007608 GTTAGAGTGGTCGGATTTGCC 58.992 52.381 0.00 0.00 0.00 4.52
38 39 0.539986 TAGAGTGGTCGGATTTGCCC 59.460 55.000 0.00 0.00 0.00 5.36
39 40 1.002624 GAGTGGTCGGATTTGCCCA 60.003 57.895 0.00 0.00 0.00 5.36
40 41 0.394352 GAGTGGTCGGATTTGCCCAT 60.394 55.000 0.00 0.00 0.00 4.00
41 42 0.394352 AGTGGTCGGATTTGCCCATC 60.394 55.000 0.00 0.00 0.00 3.51
42 43 0.679640 GTGGTCGGATTTGCCCATCA 60.680 55.000 0.00 0.00 0.00 3.07
43 44 0.258484 TGGTCGGATTTGCCCATCAT 59.742 50.000 0.00 0.00 0.00 2.45
44 45 0.670162 GGTCGGATTTGCCCATCATG 59.330 55.000 0.00 0.00 0.00 3.07
45 46 1.679139 GTCGGATTTGCCCATCATGA 58.321 50.000 0.00 0.00 0.00 3.07
46 47 2.233271 GTCGGATTTGCCCATCATGAT 58.767 47.619 1.18 1.18 0.00 2.45
47 48 2.624838 GTCGGATTTGCCCATCATGATT 59.375 45.455 5.16 0.00 0.00 2.57
48 49 2.624364 TCGGATTTGCCCATCATGATTG 59.376 45.455 5.16 2.12 0.00 2.67
49 50 2.363038 CGGATTTGCCCATCATGATTGT 59.637 45.455 5.16 0.00 0.00 2.71
50 51 3.569277 CGGATTTGCCCATCATGATTGTA 59.431 43.478 5.16 0.00 0.00 2.41
51 52 4.320714 CGGATTTGCCCATCATGATTGTAG 60.321 45.833 5.16 0.00 0.00 2.74
52 53 4.828939 GGATTTGCCCATCATGATTGTAGA 59.171 41.667 5.16 0.00 0.00 2.59
53 54 5.479375 GGATTTGCCCATCATGATTGTAGAT 59.521 40.000 5.16 0.94 0.00 1.98
54 55 5.777850 TTTGCCCATCATGATTGTAGATG 57.222 39.130 5.16 0.00 39.02 2.90
55 56 3.151554 TGCCCATCATGATTGTAGATGC 58.848 45.455 5.16 1.95 38.21 3.91
56 57 3.181437 TGCCCATCATGATTGTAGATGCT 60.181 43.478 5.16 0.00 38.21 3.79
57 58 4.041938 TGCCCATCATGATTGTAGATGCTA 59.958 41.667 5.16 0.00 38.21 3.49
58 59 5.191426 GCCCATCATGATTGTAGATGCTAT 58.809 41.667 5.16 0.00 38.21 2.97
59 60 5.066117 GCCCATCATGATTGTAGATGCTATG 59.934 44.000 5.16 0.00 38.21 2.23
60 61 6.412214 CCCATCATGATTGTAGATGCTATGA 58.588 40.000 5.16 0.00 38.21 2.15
61 62 6.539103 CCCATCATGATTGTAGATGCTATGAG 59.461 42.308 5.16 0.00 38.21 2.90
62 63 6.037281 CCATCATGATTGTAGATGCTATGAGC 59.963 42.308 5.16 0.00 42.82 4.26
63 64 5.166398 TCATGATTGTAGATGCTATGAGCG 58.834 41.667 0.00 0.00 46.26 5.03
64 65 4.853924 TGATTGTAGATGCTATGAGCGA 57.146 40.909 0.00 0.00 46.26 4.93
65 66 5.200368 TGATTGTAGATGCTATGAGCGAA 57.800 39.130 0.00 0.00 46.26 4.70
66 67 4.984785 TGATTGTAGATGCTATGAGCGAAC 59.015 41.667 0.00 0.00 46.26 3.95
67 68 3.371102 TGTAGATGCTATGAGCGAACC 57.629 47.619 0.00 0.00 46.26 3.62
68 69 2.693074 TGTAGATGCTATGAGCGAACCA 59.307 45.455 0.00 0.00 46.26 3.67
69 70 2.522836 AGATGCTATGAGCGAACCAG 57.477 50.000 0.00 0.00 46.26 4.00
70 71 0.864455 GATGCTATGAGCGAACCAGC 59.136 55.000 0.00 0.00 46.26 4.85
71 72 0.877649 ATGCTATGAGCGAACCAGCG 60.878 55.000 0.00 0.00 46.26 5.18
80 81 3.793144 GAACCAGCGCGCTCCAAG 61.793 66.667 34.28 22.02 0.00 3.61
81 82 4.314440 AACCAGCGCGCTCCAAGA 62.314 61.111 34.28 0.00 0.00 3.02
82 83 3.612247 AACCAGCGCGCTCCAAGAT 62.612 57.895 34.28 12.27 0.00 2.40
83 84 3.267860 CCAGCGCGCTCCAAGATC 61.268 66.667 34.28 0.00 0.00 2.75
84 85 3.267860 CAGCGCGCTCCAAGATCC 61.268 66.667 34.28 0.00 0.00 3.36
85 86 3.774528 AGCGCGCTCCAAGATCCA 61.775 61.111 31.32 0.00 0.00 3.41
86 87 3.267860 GCGCGCTCCAAGATCCAG 61.268 66.667 26.67 0.00 0.00 3.86
87 88 2.587194 CGCGCTCCAAGATCCAGG 60.587 66.667 5.56 0.00 0.00 4.45
88 89 2.203126 GCGCTCCAAGATCCAGGG 60.203 66.667 0.00 0.00 0.00 4.45
89 90 2.203126 CGCTCCAAGATCCAGGGC 60.203 66.667 1.54 3.63 0.00 5.19
90 91 2.739996 CGCTCCAAGATCCAGGGCT 61.740 63.158 1.54 0.00 0.00 5.19
91 92 1.153005 GCTCCAAGATCCAGGGCTG 60.153 63.158 1.54 0.00 0.00 4.85
92 93 1.630126 GCTCCAAGATCCAGGGCTGA 61.630 60.000 1.54 0.00 0.00 4.26
93 94 0.179936 CTCCAAGATCCAGGGCTGAC 59.820 60.000 1.54 0.00 0.00 3.51
94 95 1.153289 CCAAGATCCAGGGCTGACG 60.153 63.158 0.00 0.00 0.00 4.35
95 96 1.617018 CCAAGATCCAGGGCTGACGA 61.617 60.000 0.00 0.00 0.00 4.20
96 97 0.467384 CAAGATCCAGGGCTGACGAT 59.533 55.000 0.00 0.00 0.00 3.73
97 98 0.467384 AAGATCCAGGGCTGACGATG 59.533 55.000 0.00 0.00 0.00 3.84
98 99 1.596477 GATCCAGGGCTGACGATGC 60.596 63.158 0.00 0.00 0.00 3.91
104 105 2.512515 GGCTGACGATGCCTCCAC 60.513 66.667 9.95 0.00 46.38 4.02
105 106 2.887568 GCTGACGATGCCTCCACG 60.888 66.667 0.00 0.00 0.00 4.94
106 107 2.573869 CTGACGATGCCTCCACGT 59.426 61.111 0.00 0.00 42.84 4.49
111 112 3.782042 GATGCCTCCACGTCGAAC 58.218 61.111 0.00 0.00 0.00 3.95
112 113 1.080093 GATGCCTCCACGTCGAACA 60.080 57.895 0.00 0.00 0.00 3.18
113 114 0.460284 GATGCCTCCACGTCGAACAT 60.460 55.000 0.00 0.00 0.00 2.71
114 115 0.740868 ATGCCTCCACGTCGAACATG 60.741 55.000 0.00 0.00 0.00 3.21
115 116 2.100631 GCCTCCACGTCGAACATGG 61.101 63.158 0.00 4.78 34.58 3.66
116 117 1.589630 CCTCCACGTCGAACATGGA 59.410 57.895 11.82 11.82 40.27 3.41
117 118 0.736325 CCTCCACGTCGAACATGGAC 60.736 60.000 9.00 0.00 37.60 4.02
122 123 3.474806 GTCGAACATGGACGCTGG 58.525 61.111 0.00 0.00 0.00 4.85
123 124 2.434185 TCGAACATGGACGCTGGC 60.434 61.111 0.00 0.00 0.00 4.85
124 125 2.741985 CGAACATGGACGCTGGCA 60.742 61.111 0.00 0.00 0.00 4.92
125 126 2.108514 CGAACATGGACGCTGGCAT 61.109 57.895 0.00 0.00 0.00 4.40
126 127 1.647545 CGAACATGGACGCTGGCATT 61.648 55.000 0.00 0.00 0.00 3.56
127 128 0.099436 GAACATGGACGCTGGCATTC 59.901 55.000 0.00 0.00 0.00 2.67
128 129 1.315257 AACATGGACGCTGGCATTCC 61.315 55.000 0.00 0.00 0.00 3.01
129 130 2.124151 ATGGACGCTGGCATTCCC 60.124 61.111 7.30 0.00 0.00 3.97
130 131 2.982643 ATGGACGCTGGCATTCCCA 61.983 57.895 7.30 4.47 42.79 4.37
131 132 2.361104 GGACGCTGGCATTCCCAA 60.361 61.111 0.00 0.00 44.81 4.12
132 133 2.700773 GGACGCTGGCATTCCCAAC 61.701 63.158 0.00 0.00 44.81 3.77
133 134 1.675641 GACGCTGGCATTCCCAACT 60.676 57.895 0.00 0.00 44.81 3.16
134 135 0.392461 GACGCTGGCATTCCCAACTA 60.392 55.000 0.00 0.00 44.81 2.24
135 136 0.676782 ACGCTGGCATTCCCAACTAC 60.677 55.000 0.00 0.00 44.81 2.73
136 137 0.676466 CGCTGGCATTCCCAACTACA 60.676 55.000 0.00 0.00 44.81 2.74
137 138 1.098050 GCTGGCATTCCCAACTACAG 58.902 55.000 0.00 0.00 44.81 2.74
138 139 1.614317 GCTGGCATTCCCAACTACAGT 60.614 52.381 0.00 0.00 44.81 3.55
139 140 2.795329 CTGGCATTCCCAACTACAGTT 58.205 47.619 0.00 0.00 44.81 3.16
140 141 3.157087 CTGGCATTCCCAACTACAGTTT 58.843 45.455 0.00 0.00 44.81 2.66
141 142 4.331968 CTGGCATTCCCAACTACAGTTTA 58.668 43.478 0.00 0.00 44.81 2.01
142 143 4.076394 TGGCATTCCCAACTACAGTTTAC 58.924 43.478 0.00 0.00 41.82 2.01
143 144 4.076394 GGCATTCCCAACTACAGTTTACA 58.924 43.478 0.00 0.00 35.83 2.41
306 315 0.537653 AGCTTCCGCTAGAACCTTCC 59.462 55.000 0.00 0.00 46.79 3.46
307 316 0.806492 GCTTCCGCTAGAACCTTCCG 60.806 60.000 0.00 0.00 0.00 4.30
308 317 0.531200 CTTCCGCTAGAACCTTCCGT 59.469 55.000 0.00 0.00 0.00 4.69
309 318 0.529378 TTCCGCTAGAACCTTCCGTC 59.471 55.000 0.00 0.00 0.00 4.79
310 319 0.323178 TCCGCTAGAACCTTCCGTCT 60.323 55.000 0.00 0.00 0.00 4.18
311 320 1.065199 TCCGCTAGAACCTTCCGTCTA 60.065 52.381 0.00 0.00 0.00 2.59
312 321 1.065251 CCGCTAGAACCTTCCGTCTAC 59.935 57.143 0.00 0.00 0.00 2.59
313 322 1.267932 CGCTAGAACCTTCCGTCTACG 60.268 57.143 0.00 0.00 39.44 3.51
314 323 1.533547 GCTAGAACCTTCCGTCTACGC 60.534 57.143 0.00 0.00 38.18 4.42
315 324 2.015587 CTAGAACCTTCCGTCTACGCT 58.984 52.381 0.00 0.00 38.18 5.07
316 325 0.810016 AGAACCTTCCGTCTACGCTC 59.190 55.000 0.00 0.00 38.18 5.03
317 326 0.522915 GAACCTTCCGTCTACGCTCG 60.523 60.000 0.00 0.00 38.18 5.03
318 327 2.278013 CCTTCCGTCTACGCTCGC 60.278 66.667 0.00 0.00 38.18 5.03
319 328 2.762234 CCTTCCGTCTACGCTCGCT 61.762 63.158 0.00 0.00 38.18 4.93
320 329 1.583967 CTTCCGTCTACGCTCGCTG 60.584 63.158 0.00 0.00 38.18 5.18
321 330 3.678717 TTCCGTCTACGCTCGCTGC 62.679 63.158 0.00 0.00 38.18 5.25
717 804 0.108615 CCTGCGAGTTTCAGATCCGT 60.109 55.000 0.00 0.00 33.54 4.69
726 813 3.055312 AGTTTCAGATCCGTACTTTCCCC 60.055 47.826 0.00 0.00 0.00 4.81
727 814 1.492764 TCAGATCCGTACTTTCCCCC 58.507 55.000 0.00 0.00 0.00 5.40
757 844 3.679725 TCCGATGAAATTTCGATTTGCG 58.320 40.909 13.34 9.57 38.88 4.85
777 870 1.102978 CATTTAGGCGAAACCCCCAG 58.897 55.000 0.00 0.00 40.58 4.45
780 873 0.996583 TTAGGCGAAACCCCCAGATT 59.003 50.000 0.00 0.00 40.58 2.40
786 879 2.224185 GCGAAACCCCCAGATTTTGTTT 60.224 45.455 0.00 0.00 32.23 2.83
797 890 6.407979 CCCCAGATTTTGTTTTCAAGGAAGAA 60.408 38.462 0.00 0.00 41.09 2.52
808 901 4.469469 TCAAGGAAGAAACCCCAAATCT 57.531 40.909 0.00 0.00 0.00 2.40
831 924 0.687354 ACTTCGTGGCCTCACTTCAT 59.313 50.000 3.32 0.00 41.53 2.57
842 935 3.755378 GCCTCACTTCATGAAATCAGTGT 59.245 43.478 19.72 7.38 36.48 3.55
879 975 1.560860 GGTGTCTCGTCTGTGCAAGC 61.561 60.000 0.00 0.00 0.00 4.01
899 999 2.174424 GCTTCATCTTGAATCCTCCCCT 59.826 50.000 0.00 0.00 35.59 4.79
902 1002 4.953781 TCATCTTGAATCCTCCCCTTTT 57.046 40.909 0.00 0.00 0.00 2.27
949 1067 2.497675 TGCGATTTCTCCTTGCTAGAGT 59.502 45.455 0.00 0.00 32.93 3.24
953 1071 5.285651 CGATTTCTCCTTGCTAGAGTTAGG 58.714 45.833 0.00 0.00 32.93 2.69
970 1088 1.450360 AGGAAAGAAGAAGGGCCTGT 58.550 50.000 6.92 0.00 0.00 4.00
981 1099 2.272471 GGCCTGTGGGGAGCTAAC 59.728 66.667 0.00 0.00 37.23 2.34
998 1116 0.675522 AACGACGCGAATGGGGAAAT 60.676 50.000 15.93 0.00 0.00 2.17
1040 1158 4.357279 GGGCTGCCTGGTGAGCTT 62.357 66.667 19.68 0.00 35.42 3.74
1051 1169 1.376037 GTGAGCTTCCGGTTCCTGG 60.376 63.158 0.00 0.00 0.00 4.45
1055 1179 2.359975 CTTCCGGTTCCTGGTGGC 60.360 66.667 0.00 0.00 0.00 5.01
1089 1213 4.271696 TGATGTCAACTCGGAGTCAAAT 57.728 40.909 11.71 1.85 0.00 2.32
1101 1225 2.484264 GGAGTCAAATACAGGTGCACAC 59.516 50.000 20.43 8.23 0.00 3.82
1156 1280 2.224621 TGCAGGAAGTCCTTCTCCTTTG 60.225 50.000 6.97 1.14 46.09 2.77
1165 1289 4.531339 AGTCCTTCTCCTTTGGTTACTACC 59.469 45.833 0.00 0.00 45.26 3.18
1179 1310 4.992951 GGTTACTACCGAGATGTTGTGTTT 59.007 41.667 0.00 0.00 34.01 2.83
1181 1312 4.602340 ACTACCGAGATGTTGTGTTTCT 57.398 40.909 0.00 0.00 0.00 2.52
1189 1321 2.292103 TGTTGTGTTTCTTTGCAGGC 57.708 45.000 0.00 0.00 0.00 4.85
1231 1366 0.698238 CACTCCAGGGGAATGTCCAA 59.302 55.000 0.00 0.00 38.64 3.53
1239 1398 2.308866 AGGGGAATGTCCAAGTTAGTGG 59.691 50.000 0.00 0.00 38.64 4.00
1281 1440 2.507102 CTCCACGCCGCTGTACAG 60.507 66.667 18.93 18.93 0.00 2.74
1315 1474 1.442769 GTGCGCTTTCTCATTCCTGA 58.557 50.000 9.73 0.00 0.00 3.86
1316 1475 1.806542 GTGCGCTTTCTCATTCCTGAA 59.193 47.619 9.73 0.00 0.00 3.02
1321 1480 4.730035 GCGCTTTCTCATTCCTGAATTCAG 60.730 45.833 25.75 25.75 43.40 3.02
1344 1503 1.355381 TCAGCCCCTGAATGACATTGT 59.645 47.619 5.14 0.00 37.57 2.71
1351 1510 3.006110 CCCTGAATGACATTGTTTGCACT 59.994 43.478 5.14 0.00 0.00 4.40
1372 1531 2.135139 GCTTCGGCAAAAAGGGAAAAG 58.865 47.619 0.00 0.00 41.33 2.27
1393 1552 5.376854 AGCAAACATTAGTTGCCTACAAG 57.623 39.130 5.56 0.00 38.17 3.16
1404 1568 6.607004 AGTTGCCTACAAGTACTGTCTATT 57.393 37.500 0.00 0.00 37.68 1.73
1417 1734 8.345724 AGTACTGTCTATTTATATACCCCGTG 57.654 38.462 0.00 0.00 0.00 4.94
1447 1764 7.201767 GCTTACTGGCTTATGTTCTGATCATTT 60.202 37.037 6.54 0.00 0.00 2.32
1504 1821 0.911525 AGGGCACTGTGAGGCTGTAT 60.912 55.000 12.86 0.00 0.00 2.29
1518 1835 1.876156 GCTGTATGGCTATTGCTGTCC 59.124 52.381 0.00 0.00 39.59 4.02
1528 1845 3.127721 GCTATTGCTGTCCAAAGGAGTTC 59.872 47.826 0.00 0.00 36.92 3.01
1531 1848 2.507484 TGCTGTCCAAAGGAGTTCATG 58.493 47.619 0.00 0.00 29.39 3.07
1543 1860 3.576118 AGGAGTTCATGTGGATCCTATCG 59.424 47.826 14.23 0.00 38.62 2.92
1550 1867 4.157840 TCATGTGGATCCTATCGATTACCG 59.842 45.833 14.23 0.00 40.25 4.02
1559 1877 3.583054 TCGATTACCGAGGGACACT 57.417 52.632 0.00 0.00 43.23 3.55
1579 1897 2.566833 ATTACACTTGGCTGCTGTGA 57.433 45.000 20.67 7.18 35.83 3.58
1587 1905 1.968540 GGCTGCTGTGAAGGACCAC 60.969 63.158 0.00 0.00 37.55 4.16
1608 1926 5.416083 CACGATCAGGTTGTAATGGTTCTA 58.584 41.667 0.00 0.00 0.00 2.10
1649 1967 9.689976 TGATGTAAGTTGTTTATTTCATGGTTG 57.310 29.630 0.00 0.00 0.00 3.77
1661 1979 1.086696 CATGGTTGCCTAACTGGACG 58.913 55.000 0.00 0.00 38.35 4.79
1663 1981 2.388232 GGTTGCCTAACTGGACGCG 61.388 63.158 3.53 3.53 38.35 6.01
1668 1986 0.384669 GCCTAACTGGACGCGTATCT 59.615 55.000 13.97 0.00 38.35 1.98
1669 1987 1.864435 GCCTAACTGGACGCGTATCTG 60.864 57.143 13.97 14.18 38.35 2.90
1677 1995 6.360844 ACTGGACGCGTATCTGTATATATC 57.639 41.667 13.97 0.00 0.00 1.63
1678 1996 5.878669 ACTGGACGCGTATCTGTATATATCA 59.121 40.000 13.97 0.00 0.00 2.15
1680 1998 6.110707 TGGACGCGTATCTGTATATATCAGA 58.889 40.000 13.97 13.69 44.37 3.27
1742 2063 3.838565 TGGTTTATTCTTGGAGGTGCAA 58.161 40.909 0.00 0.00 0.00 4.08
1745 2066 4.321230 GGTTTATTCTTGGAGGTGCAACAG 60.321 45.833 3.64 0.00 39.98 3.16
1746 2067 2.957402 ATTCTTGGAGGTGCAACAGA 57.043 45.000 3.64 0.00 39.98 3.41
1758 2079 0.524862 GCAACAGAGCACTTGATGGG 59.475 55.000 0.00 0.00 0.00 4.00
1764 2085 3.087031 CAGAGCACTTGATGGGATGTTT 58.913 45.455 0.00 0.00 0.00 2.83
1773 2094 8.629158 GCACTTGATGGGATGTTTAACAATATA 58.371 33.333 0.66 0.00 0.00 0.86
1850 2171 2.477863 GCTGCCCATCACGTATTTTCAC 60.478 50.000 0.00 0.00 0.00 3.18
1851 2172 2.088423 TGCCCATCACGTATTTTCACC 58.912 47.619 0.00 0.00 0.00 4.02
1852 2173 2.088423 GCCCATCACGTATTTTCACCA 58.912 47.619 0.00 0.00 0.00 4.17
1896 2217 2.097825 GTCCTTGAAATGCATGAGGCT 58.902 47.619 0.00 0.00 45.15 4.58
1909 2230 4.080356 TGCATGAGGCTACTTATTGAGGTT 60.080 41.667 0.00 0.00 45.15 3.50
1946 2267 7.315142 TGACTTGATGCATTTTCTTATGTTCC 58.685 34.615 0.00 0.00 0.00 3.62
2011 2340 6.423182 TGTTGGGTAGAAAATCCAGATTAGG 58.577 40.000 0.00 0.00 31.59 2.69
2012 2341 5.646692 TGGGTAGAAAATCCAGATTAGGG 57.353 43.478 0.00 0.00 0.00 3.53
2076 2406 8.867112 TTACTTGCATAAATCGTACCTCTAAG 57.133 34.615 0.00 0.00 0.00 2.18
2077 2407 5.753921 ACTTGCATAAATCGTACCTCTAAGC 59.246 40.000 0.00 0.00 0.00 3.09
2088 2419 4.514816 CGTACCTCTAAGCTTACCCTACTC 59.485 50.000 0.86 0.00 0.00 2.59
2089 2420 3.913509 ACCTCTAAGCTTACCCTACTCC 58.086 50.000 0.86 0.00 0.00 3.85
2090 2421 2.885894 CCTCTAAGCTTACCCTACTCCG 59.114 54.545 0.86 0.00 0.00 4.63
2091 2422 2.885894 CTCTAAGCTTACCCTACTCCGG 59.114 54.545 0.86 0.00 0.00 5.14
2099 2430 4.021632 GCTTACCCTACTCCGGTTTATAGG 60.022 50.000 0.00 8.58 34.66 2.57
2102 2433 3.140895 ACCCTACTCCGGTTTATAGGCTA 59.859 47.826 0.00 0.00 34.04 3.93
2105 2436 5.515534 CCCTACTCCGGTTTATAGGCTAGTA 60.516 48.000 0.00 0.00 34.04 1.82
2115 2446 6.380190 GTTTATAGGCTAGTACCGATGTGAG 58.620 44.000 0.00 0.00 33.69 3.51
2118 2449 0.381089 GCTAGTACCGATGTGAGCGT 59.619 55.000 0.00 0.00 0.00 5.07
2134 2465 1.816835 AGCGTTCGTGATTACTCTGGA 59.183 47.619 0.00 0.00 0.00 3.86
2146 2477 5.783360 TGATTACTCTGGACCAACTCCTTTA 59.217 40.000 0.00 0.00 40.26 1.85
2148 2479 6.697641 TTACTCTGGACCAACTCCTTTAAT 57.302 37.500 0.00 0.00 40.26 1.40
2175 2506 2.355756 CTGTTGATGATGGCTTAACCGG 59.644 50.000 0.00 0.00 43.94 5.28
2186 2517 1.877443 GCTTAACCGGCTTTGTCAAGA 59.123 47.619 0.00 0.00 30.57 3.02
2204 2535 4.162888 TCAAGATCTTGCTAGATGCTGGAA 59.837 41.667 27.45 5.66 41.23 3.53
2230 2561 3.014342 ACCCTAACATCCCTAACCAGGTA 59.986 47.826 0.00 0.00 40.79 3.08
2251 2583 5.050972 GGTACTGTTTTCGTCTCTCTGTTTG 60.051 44.000 0.00 0.00 0.00 2.93
2254 2586 3.309682 TGTTTTCGTCTCTCTGTTTGCTG 59.690 43.478 0.00 0.00 0.00 4.41
2255 2587 2.154854 TTCGTCTCTCTGTTTGCTGG 57.845 50.000 0.00 0.00 0.00 4.85
2256 2588 1.040646 TCGTCTCTCTGTTTGCTGGT 58.959 50.000 0.00 0.00 0.00 4.00
2257 2589 2.235891 TCGTCTCTCTGTTTGCTGGTA 58.764 47.619 0.00 0.00 0.00 3.25
2261 2593 3.193691 GTCTCTCTGTTTGCTGGTAGCTA 59.806 47.826 2.24 0.00 42.97 3.32
2265 2597 5.661458 TCTCTGTTTGCTGGTAGCTATAAC 58.339 41.667 0.00 5.13 42.97 1.89
2288 2620 4.391216 CGCTTTGAGAGTTGTGATCTTGAT 59.609 41.667 0.00 0.00 0.00 2.57
2289 2621 5.445673 CGCTTTGAGAGTTGTGATCTTGATC 60.446 44.000 3.82 3.82 0.00 2.92
2291 2623 5.752036 TTGAGAGTTGTGATCTTGATCCT 57.248 39.130 7.99 0.00 0.00 3.24
2292 2624 5.082251 TGAGAGTTGTGATCTTGATCCTG 57.918 43.478 7.99 0.00 0.00 3.86
2304 2637 0.105709 TGATCCTGTCTCCCCGCATA 60.106 55.000 0.00 0.00 0.00 3.14
2307 2640 0.832135 TCCTGTCTCCCCGCATATCC 60.832 60.000 0.00 0.00 0.00 2.59
2314 2647 1.003355 CCCCGCATATCCGATGCTT 60.003 57.895 7.84 0.00 42.50 3.91
2315 2648 1.300971 CCCCGCATATCCGATGCTTG 61.301 60.000 7.84 0.00 42.50 4.01
2318 2651 0.514255 CGCATATCCGATGCTTGGTG 59.486 55.000 7.84 0.00 42.50 4.17
2357 2690 0.376152 GCGGAGATGAGTGCATTGTG 59.624 55.000 0.00 0.00 34.11 3.33
2375 2708 2.223845 TGTGCTGATTGTTCATGTGTCG 59.776 45.455 0.00 0.00 0.00 4.35
2377 2710 3.058983 GTGCTGATTGTTCATGTGTCGAA 60.059 43.478 0.00 0.00 0.00 3.71
2378 2711 3.563390 TGCTGATTGTTCATGTGTCGAAA 59.437 39.130 0.00 0.00 0.00 3.46
2379 2712 4.216042 TGCTGATTGTTCATGTGTCGAAAT 59.784 37.500 0.00 0.00 0.00 2.17
2380 2713 5.156355 GCTGATTGTTCATGTGTCGAAATT 58.844 37.500 0.00 0.00 0.00 1.82
2382 2715 6.801377 GCTGATTGTTCATGTGTCGAAATTAA 59.199 34.615 0.00 0.00 0.00 1.40
2384 2717 9.345517 CTGATTGTTCATGTGTCGAAATTAAAT 57.654 29.630 0.00 0.00 0.00 1.40
2420 2754 9.950496 ATAGGTTTATATTCTAGTTGCATCTGG 57.050 33.333 7.57 4.67 0.00 3.86
2442 2776 3.799281 TTGGTTTGCTTCAGAGTTTGG 57.201 42.857 0.00 0.00 0.00 3.28
2450 2784 2.161211 GCTTCAGAGTTTGGACTGCATC 59.839 50.000 0.00 0.00 35.88 3.91
2490 2824 1.134461 AGATTGCAGCTCCAGTGCTAG 60.134 52.381 0.00 0.00 41.98 3.42
2494 2828 1.220206 CAGCTCCAGTGCTAGGTGG 59.780 63.158 12.62 0.00 41.98 4.61
2495 2829 1.229336 AGCTCCAGTGCTAGGTGGT 60.229 57.895 0.00 0.00 42.10 4.16
2496 2830 1.078848 GCTCCAGTGCTAGGTGGTG 60.079 63.158 0.00 0.00 35.14 4.17
2536 2870 5.316987 TCTCATCGCAGAATCAGGATACTA 58.683 41.667 0.00 0.00 46.07 1.82
2541 2875 5.124776 ATCGCAGAATCAGGATACTAGTAGC 59.875 44.000 9.73 9.73 46.07 3.58
2559 2893 9.155975 ACTAGTAGCTCACAAAATTTGATACAG 57.844 33.333 13.19 3.65 0.00 2.74
2604 2938 6.441222 AGAAACATGATACTAGTAGGTCCCA 58.559 40.000 8.85 2.17 0.00 4.37
2606 2940 7.402071 AGAAACATGATACTAGTAGGTCCCAAA 59.598 37.037 8.85 0.00 0.00 3.28
2608 2942 7.504926 ACATGATACTAGTAGGTCCCAAAAA 57.495 36.000 8.85 0.00 0.00 1.94
2644 2978 7.335171 TGTTGTTTCTCTAAGACCATGATCATG 59.665 37.037 25.97 25.97 38.51 3.07
2645 2979 7.186570 TGTTTCTCTAAGACCATGATCATGA 57.813 36.000 32.71 14.40 41.20 3.07
2646 2980 7.044181 TGTTTCTCTAAGACCATGATCATGAC 58.956 38.462 32.71 24.66 41.20 3.06
2647 2981 7.093156 TGTTTCTCTAAGACCATGATCATGACT 60.093 37.037 32.71 26.14 41.20 3.41
2648 2982 7.429374 TTCTCTAAGACCATGATCATGACTT 57.571 36.000 32.71 31.52 41.20 3.01
2649 2983 7.429374 TCTCTAAGACCATGATCATGACTTT 57.571 36.000 32.00 24.89 41.20 2.66
2650 2984 7.855375 TCTCTAAGACCATGATCATGACTTTT 58.145 34.615 32.00 23.72 41.20 2.27
2658 2992 9.167311 GACCATGATCATGACTTTTACTTAACT 57.833 33.333 32.71 0.00 41.20 2.24
2659 2993 8.950210 ACCATGATCATGACTTTTACTTAACTG 58.050 33.333 32.71 14.62 41.20 3.16
2712 3046 6.701841 TGTGTCTAGCTTTACTTCAACTTCTG 59.298 38.462 0.00 0.00 0.00 3.02
2762 3097 5.245531 TGTTACTGTCTGTGGGATGAATTC 58.754 41.667 0.00 0.00 0.00 2.17
2768 3103 5.875224 TGTCTGTGGGATGAATTCAGTAAA 58.125 37.500 14.54 0.00 0.00 2.01
2769 3104 5.705441 TGTCTGTGGGATGAATTCAGTAAAC 59.295 40.000 14.54 10.09 0.00 2.01
2770 3105 4.935205 TCTGTGGGATGAATTCAGTAAACG 59.065 41.667 14.54 6.87 0.00 3.60
2771 3106 4.006989 TGTGGGATGAATTCAGTAAACGG 58.993 43.478 14.54 0.00 0.00 4.44
2779 3114 7.484959 GGATGAATTCAGTAAACGGTCATTTTC 59.515 37.037 14.54 0.53 0.00 2.29
2916 3251 1.335780 CGAGCTAGCAGCAGATAGTGG 60.336 57.143 18.83 0.00 45.56 4.00
2941 3276 4.438797 CGACACAAGCTTGTTCAAATTCTG 59.561 41.667 29.23 16.54 39.91 3.02
2944 3279 6.862209 ACACAAGCTTGTTCAAATTCTGTTA 58.138 32.000 29.23 0.00 39.91 2.41
2960 3295 5.836024 TCTGTTACCTAGGACAAAACCAT 57.164 39.130 17.98 0.00 0.00 3.55
2975 3310 7.008021 ACAAAACCATTTAAATCTCTGCCAT 57.992 32.000 0.00 0.00 0.00 4.40
2980 3315 7.902920 ACCATTTAAATCTCTGCCATATTGT 57.097 32.000 0.00 0.00 0.00 2.71
2988 3323 4.769688 TCTCTGCCATATTGTAGTGTTGG 58.230 43.478 0.00 0.00 0.00 3.77
2994 3329 3.945285 CCATATTGTAGTGTTGGTGGGAC 59.055 47.826 0.00 0.00 0.00 4.46
3000 3335 4.391155 TGTAGTGTTGGTGGGACAATTAC 58.609 43.478 0.00 0.00 44.16 1.89
3005 3340 3.886505 TGTTGGTGGGACAATTACAACTC 59.113 43.478 0.00 0.00 44.16 3.01
3014 3349 7.606456 GTGGGACAATTACAACTCTGAATTCTA 59.394 37.037 7.05 0.00 44.16 2.10
3033 3368 7.707624 ATTCTACAAAAATCAATGCTCCTCA 57.292 32.000 0.00 0.00 0.00 3.86
3084 3422 7.823149 TTGCTTCGTACTTTCTATTTAGACC 57.177 36.000 0.00 0.00 30.81 3.85
3122 3460 7.117397 TGCCCGTCTTATAGATAGCTTATACT 58.883 38.462 0.00 0.00 0.00 2.12
3123 3461 7.614583 TGCCCGTCTTATAGATAGCTTATACTT 59.385 37.037 0.00 0.00 0.00 2.24
3132 3470 8.865420 ATAGATAGCTTATACTTCGTTCTCCA 57.135 34.615 0.00 0.00 0.00 3.86
3134 3472 8.184304 AGATAGCTTATACTTCGTTCTCCATT 57.816 34.615 0.00 0.00 0.00 3.16
3138 3476 5.810587 GCTTATACTTCGTTCTCCATTGACA 59.189 40.000 0.00 0.00 0.00 3.58
3150 3488 7.254795 CGTTCTCCATTGACAGAGTAAAAAGTT 60.255 37.037 0.00 0.00 0.00 2.66
3152 3490 7.279615 TCTCCATTGACAGAGTAAAAAGTTCA 58.720 34.615 0.00 0.00 0.00 3.18
3154 3492 6.262273 TCCATTGACAGAGTAAAAAGTTCACC 59.738 38.462 0.00 0.00 0.00 4.02
3157 3495 4.569162 TGACAGAGTAAAAAGTTCACCACG 59.431 41.667 0.00 0.00 0.00 4.94
3179 3517 7.064609 CCACGAAGTACACATATTCATGAACTT 59.935 37.037 11.07 7.57 41.61 2.66
3214 3552 9.083422 TGCATATATAGCTTATACTCCATCCTC 57.917 37.037 0.00 0.00 0.00 3.71
3226 3564 4.593956 ACTCCATCCTCCTTCAATTGTTC 58.406 43.478 5.13 0.00 0.00 3.18
3244 3582 1.262417 TCGCCACTTGGACTATGTCA 58.738 50.000 0.00 0.00 37.39 3.58
3245 3583 1.067142 TCGCCACTTGGACTATGTCAC 60.067 52.381 0.00 0.00 37.39 3.67
3246 3584 1.066858 CGCCACTTGGACTATGTCACT 60.067 52.381 0.00 0.00 37.39 3.41
3247 3585 2.350522 GCCACTTGGACTATGTCACTG 58.649 52.381 0.00 0.00 37.39 3.66
3248 3586 2.289694 GCCACTTGGACTATGTCACTGT 60.290 50.000 0.00 0.00 37.39 3.55
3249 3587 3.329386 CCACTTGGACTATGTCACTGTG 58.671 50.000 0.17 0.17 37.39 3.66
3250 3588 3.329386 CACTTGGACTATGTCACTGTGG 58.671 50.000 8.11 0.00 33.68 4.17
3251 3589 2.289694 ACTTGGACTATGTCACTGTGGC 60.290 50.000 5.24 5.24 33.68 5.01
3252 3590 1.347062 TGGACTATGTCACTGTGGCA 58.653 50.000 18.33 18.33 35.91 4.92
3279 3617 0.450983 GCTAGCAAGCTTTCAGGCTG 59.549 55.000 16.88 8.58 45.85 4.85
3289 3627 0.110295 TTTCAGGCTGGCTGCTGTTA 59.890 50.000 24.83 5.92 42.39 2.41
3413 3756 3.395941 CTGGCTTTATTCCTCATAGGGGT 59.604 47.826 0.00 0.00 35.59 4.95
3418 3761 5.746361 GCTTTATTCCTCATAGGGGTTCCTC 60.746 48.000 0.00 0.00 43.66 3.71
3441 5612 8.918961 CTCTTTATATAGAGGCCTAACAATCG 57.081 38.462 4.42 0.00 38.38 3.34
3447 5618 4.015872 AGAGGCCTAACAATCGAACAAA 57.984 40.909 4.42 0.00 0.00 2.83
3489 5660 1.256812 GCTCAAGGCCCAAGCTAAAA 58.743 50.000 13.00 0.00 39.73 1.52
3490 5661 1.618343 GCTCAAGGCCCAAGCTAAAAA 59.382 47.619 13.00 0.00 39.73 1.94
3549 5720 2.035626 ATTGGGAACTGCGGTGGG 59.964 61.111 0.00 0.00 0.00 4.61
3550 5721 2.478335 GATTGGGAACTGCGGTGGGA 62.478 60.000 0.00 0.00 0.00 4.37
3564 5739 2.159071 CGGTGGGACATGTATTTCCGTA 60.159 50.000 17.82 0.28 44.52 4.02
3579 5754 2.414806 TCCGTACGCAATGCTGTAAAA 58.585 42.857 10.49 0.00 0.00 1.52
3580 5755 2.413796 TCCGTACGCAATGCTGTAAAAG 59.586 45.455 10.49 3.45 0.00 2.27
3581 5756 2.158841 CCGTACGCAATGCTGTAAAAGT 59.841 45.455 10.49 0.00 0.00 2.66
3582 5757 3.152983 CGTACGCAATGCTGTAAAAGTG 58.847 45.455 0.52 0.00 0.00 3.16
3583 5758 3.363575 CGTACGCAATGCTGTAAAAGTGT 60.364 43.478 0.52 0.00 0.00 3.55
3584 5759 4.143284 CGTACGCAATGCTGTAAAAGTGTA 60.143 41.667 0.52 0.00 0.00 2.90
3585 5760 4.822036 ACGCAATGCTGTAAAAGTGTAA 57.178 36.364 2.94 0.00 0.00 2.41
3586 5761 5.176407 ACGCAATGCTGTAAAAGTGTAAA 57.824 34.783 2.94 0.00 0.00 2.01
3587 5762 5.583495 ACGCAATGCTGTAAAAGTGTAAAA 58.417 33.333 2.94 0.00 0.00 1.52
3588 5763 6.212955 ACGCAATGCTGTAAAAGTGTAAAAT 58.787 32.000 2.94 0.00 0.00 1.82
3589 5764 7.364200 ACGCAATGCTGTAAAAGTGTAAAATA 58.636 30.769 2.94 0.00 0.00 1.40
3590 5765 8.026607 ACGCAATGCTGTAAAAGTGTAAAATAT 58.973 29.630 2.94 0.00 0.00 1.28
3591 5766 8.313227 CGCAATGCTGTAAAAGTGTAAAATATG 58.687 33.333 2.94 0.00 0.00 1.78
3592 5767 9.139174 GCAATGCTGTAAAAGTGTAAAATATGT 57.861 29.630 0.00 0.00 0.00 2.29
3596 5771 9.891828 TGCTGTAAAAGTGTAAAATATGTTGAG 57.108 29.630 0.00 0.00 0.00 3.02
3664 5839 8.859236 ATGAAGGTGATATATGTTGAGATTGG 57.141 34.615 0.00 0.00 0.00 3.16
3669 5844 6.320171 GTGATATATGTTGAGATTGGCATGC 58.680 40.000 9.90 9.90 0.00 4.06
3776 5981 9.053840 AGATCATAATTGAGTAATTGACAGCTG 57.946 33.333 13.48 13.48 37.12 4.24
3784 5989 5.128663 TGAGTAATTGACAGCTGGCTACATA 59.871 40.000 22.80 7.67 0.00 2.29
3790 5995 5.614324 TGACAGCTGGCTACATATTTAGT 57.386 39.130 22.80 0.00 0.00 2.24
3804 6009 9.337396 CTACATATTTAGTTTGGTAATGCAGGA 57.663 33.333 0.00 0.00 0.00 3.86
3870 6080 4.342359 TGGAACTACTGAGAGGTACTTCC 58.658 47.826 0.61 0.00 41.55 3.46
3884 6094 6.961360 AGGTACTTCCTTTTCTCTTTTTGG 57.039 37.500 0.00 0.00 45.67 3.28
3920 6130 5.414454 TCCCTCTGTTCCAAAATTATTGTCG 59.586 40.000 0.00 0.00 0.00 4.35
3923 6133 6.007936 TCTGTTCCAAAATTATTGTCGTGG 57.992 37.500 0.00 0.00 0.00 4.94
3934 6144 9.804758 AAAATTATTGTCGTGGTTTTAGTTCAA 57.195 25.926 0.00 0.00 0.00 2.69
3936 6146 9.804758 AATTATTGTCGTGGTTTTAGTTCAAAA 57.195 25.926 0.00 0.00 33.66 2.44
3939 6149 8.710835 ATTGTCGTGGTTTTAGTTCAAAATTT 57.289 26.923 0.00 0.00 38.36 1.82
3940 6150 7.513190 TGTCGTGGTTTTAGTTCAAAATTTG 57.487 32.000 0.00 0.00 38.36 2.32
3942 6152 7.813148 TGTCGTGGTTTTAGTTCAAAATTTGAA 59.187 29.630 16.28 16.28 46.68 2.69
3968 6178 7.777440 ACCAAACCACAACAATAATTTTGGAAT 59.223 29.630 15.29 0.00 42.70 3.01
3972 6182 7.160726 ACCACAACAATAATTTTGGAATGGAG 58.839 34.615 16.53 8.08 0.00 3.86
4043 6253 7.885399 GCTACCTTTTGTATGAATCCATCCTAT 59.115 37.037 0.00 0.00 34.31 2.57
4044 6254 9.224267 CTACCTTTTGTATGAATCCATCCTATG 57.776 37.037 0.00 0.00 34.31 2.23
4070 6280 2.026636 AGGGCTGGCGTTTAGTTTCATA 60.027 45.455 0.00 0.00 0.00 2.15
4123 6333 0.692476 TGTACCAGGCTGCTTCATGT 59.308 50.000 9.56 2.85 0.00 3.21
4135 6345 5.393352 GGCTGCTTCATGTTGTAATCATTGA 60.393 40.000 0.00 0.00 0.00 2.57
4136 6346 5.742453 GCTGCTTCATGTTGTAATCATTGAG 59.258 40.000 0.00 0.00 0.00 3.02
4137 6347 5.643664 TGCTTCATGTTGTAATCATTGAGC 58.356 37.500 0.00 0.00 34.30 4.26
4138 6348 5.039333 GCTTCATGTTGTAATCATTGAGCC 58.961 41.667 0.00 0.00 30.87 4.70
4139 6349 5.393352 GCTTCATGTTGTAATCATTGAGCCA 60.393 40.000 0.00 0.00 30.87 4.75
4140 6350 6.587206 TTCATGTTGTAATCATTGAGCCAA 57.413 33.333 0.00 0.00 0.00 4.52
4141 6351 6.587206 TCATGTTGTAATCATTGAGCCAAA 57.413 33.333 0.00 0.00 0.00 3.28
4142 6352 6.990798 TCATGTTGTAATCATTGAGCCAAAA 58.009 32.000 0.00 0.00 0.00 2.44
4143 6353 7.613585 TCATGTTGTAATCATTGAGCCAAAAT 58.386 30.769 0.00 0.00 0.00 1.82
4144 6354 7.546316 TCATGTTGTAATCATTGAGCCAAAATG 59.454 33.333 14.11 14.11 36.54 2.32
4145 6355 5.638657 TGTTGTAATCATTGAGCCAAAATGC 59.361 36.000 0.00 0.00 35.43 3.56
4146 6356 5.402997 TGTAATCATTGAGCCAAAATGCA 57.597 34.783 0.00 0.00 35.43 3.96
4164 6374 1.495878 CATGCCAGATAGCGAGTCAC 58.504 55.000 0.00 0.00 34.65 3.67
4175 6385 2.544685 AGCGAGTCACAGATTGCATAC 58.455 47.619 0.00 0.00 0.00 2.39
4176 6386 1.594862 GCGAGTCACAGATTGCATACC 59.405 52.381 0.00 0.00 0.00 2.73
4177 6387 2.739932 GCGAGTCACAGATTGCATACCT 60.740 50.000 0.00 0.00 0.00 3.08
4206 6416 6.602009 TGATGAGTTGATGATGCATCTTTCTT 59.398 34.615 26.32 12.57 41.06 2.52
4215 6425 0.881118 GCATCTTTCTTTGTCGGCCA 59.119 50.000 2.24 0.00 0.00 5.36
4233 6443 4.856487 CGGCCATTATTTGTGTACTGTTTG 59.144 41.667 2.24 0.00 0.00 2.93
4238 6448 7.327518 GCCATTATTTGTGTACTGTTTGTTACC 59.672 37.037 0.00 0.00 0.00 2.85
4250 6460 9.649167 GTACTGTTTGTTACCACTATGATTACT 57.351 33.333 0.00 0.00 0.00 2.24
4313 6523 8.967664 TTTTTGACAGTTTGTACTATGTACCT 57.032 30.769 5.55 0.00 31.96 3.08
4370 6580 0.323725 ACTGGGGTGCATTCCATCAC 60.324 55.000 10.75 0.00 31.95 3.06
4388 6598 6.714356 TCCATCACACATGATACAAGTTTCAA 59.286 34.615 0.00 0.00 44.13 2.69
4519 6729 0.813184 AATTGATGAGTTGCCGGCTG 59.187 50.000 29.70 0.00 0.00 4.85
4606 6821 4.157289 GCAACATATATCTCTTGCCATGGG 59.843 45.833 15.13 0.00 34.21 4.00
4611 6826 0.554792 ATCTCTTGCCATGGGAAGGG 59.445 55.000 36.74 35.42 44.02 3.95
4619 6834 1.348008 CCATGGGAAGGGCAGAGCTA 61.348 60.000 2.85 0.00 0.00 3.32
4648 6863 3.389925 AAATGGTCGTTTCCTGTCGTA 57.610 42.857 0.00 0.00 0.00 3.43
4673 6888 1.733526 GGCACAGGTGTGGTGTTTC 59.266 57.895 11.96 0.00 45.72 2.78
4675 6890 1.476110 GGCACAGGTGTGGTGTTTCTA 60.476 52.381 11.96 0.00 45.72 2.10
4678 6893 3.807209 GCACAGGTGTGGTGTTTCTATCT 60.807 47.826 11.96 0.00 45.72 1.98
4703 6918 4.143179 GCAATTTGCTCAAGACAAATCAGC 60.143 41.667 14.11 6.54 44.76 4.26
4721 6936 7.804843 AATCAGCAGAAAGATTGAATAGGAG 57.195 36.000 0.00 0.00 33.47 3.69
4723 6943 5.426509 TCAGCAGAAAGATTGAATAGGAGGA 59.573 40.000 0.00 0.00 0.00 3.71
4814 7034 1.977293 AAGAGATTGCCCCTCCTCGC 61.977 60.000 0.00 0.00 0.00 5.03
4836 7056 0.684805 GGAGACCGTCATGGAGAGGT 60.685 60.000 0.40 0.00 42.00 3.85
4877 7097 6.186957 TGGCAGCAAGATCCTTTTTATCTTA 58.813 36.000 0.00 0.00 40.81 2.10
5049 7272 2.654877 GGTTGAAGGAGCGTCGGA 59.345 61.111 0.00 0.00 0.00 4.55
5138 7361 1.694150 TCTTCCTGTTAGTGCAGCAGT 59.306 47.619 8.12 8.12 33.84 4.40
5176 7400 2.017049 CCAAGGCTTGTTTAGGGATCG 58.983 52.381 24.57 2.69 0.00 3.69
5189 7413 5.587388 TTAGGGATCGTACTGGTACTTTG 57.413 43.478 8.89 0.00 34.04 2.77
5251 7475 6.127366 ACAGAGCCAAAATGTTTTCTCAGAAA 60.127 34.615 0.00 0.00 0.00 2.52
5276 7501 6.569179 TTTTCCTACTGTTAAGTCCATTGC 57.431 37.500 0.00 0.00 37.88 3.56
5281 7506 5.415701 CCTACTGTTAAGTCCATTGCATTGT 59.584 40.000 7.75 0.00 37.88 2.71
5283 7508 6.254281 ACTGTTAAGTCCATTGCATTGTAC 57.746 37.500 7.75 2.28 26.77 2.90
5285 7510 7.165485 ACTGTTAAGTCCATTGCATTGTACTA 58.835 34.615 7.18 0.00 26.77 1.82
5291 7516 8.574251 AAGTCCATTGCATTGTACTATTGTTA 57.426 30.769 7.18 0.00 0.00 2.41
5292 7517 8.752005 AGTCCATTGCATTGTACTATTGTTAT 57.248 30.769 5.16 0.00 0.00 1.89
5293 7518 9.189156 AGTCCATTGCATTGTACTATTGTTATT 57.811 29.630 5.16 0.00 0.00 1.40
5299 7524 7.424803 TGCATTGTACTATTGTTATTGGCATC 58.575 34.615 0.00 0.00 0.00 3.91
5366 7592 3.499048 GAAATGTCGTCGTCTCTTGCTA 58.501 45.455 0.00 0.00 0.00 3.49
5374 7600 4.748102 TCGTCGTCTCTTGCTAATTGTTTT 59.252 37.500 0.00 0.00 0.00 2.43
5408 7634 6.537660 GTCACTGGACAGTTACAGTTTTAGTT 59.462 38.462 10.91 0.00 45.03 2.24
5416 7642 6.815142 ACAGTTACAGTTTTAGTTGAAGTCGT 59.185 34.615 0.00 0.00 0.00 4.34
5426 7652 1.090728 TTGAAGTCGTGCTTGCACAA 58.909 45.000 22.97 4.35 37.59 3.33
5449 7675 7.758980 ACAATGCATGCATAATTTTCTCGTTTA 59.241 29.630 32.36 0.00 35.31 2.01
5450 7676 7.919313 ATGCATGCATAATTTTCTCGTTTAG 57.081 32.000 31.35 0.00 34.49 1.85
5466 7693 8.373048 TCTCGTTTAGAAAGCAAAAAGACATA 57.627 30.769 0.00 0.00 0.00 2.29
5565 7802 1.629043 TCGCTGAGTAGTTCCTTGGT 58.371 50.000 0.00 0.00 0.00 3.67
5566 7803 1.544691 TCGCTGAGTAGTTCCTTGGTC 59.455 52.381 0.00 0.00 0.00 4.02
5567 7804 1.546476 CGCTGAGTAGTTCCTTGGTCT 59.454 52.381 0.00 0.00 0.00 3.85
5568 7805 2.416162 CGCTGAGTAGTTCCTTGGTCTC 60.416 54.545 0.00 0.00 0.00 3.36
5569 7806 2.563179 GCTGAGTAGTTCCTTGGTCTCA 59.437 50.000 0.00 0.00 0.00 3.27
5570 7807 3.615351 GCTGAGTAGTTCCTTGGTCTCAC 60.615 52.174 0.00 0.00 0.00 3.51
5571 7808 2.897969 TGAGTAGTTCCTTGGTCTCACC 59.102 50.000 0.00 0.00 39.22 4.02
5572 7809 3.166679 GAGTAGTTCCTTGGTCTCACCT 58.833 50.000 0.00 0.00 39.58 4.00
5573 7810 4.202641 TGAGTAGTTCCTTGGTCTCACCTA 60.203 45.833 0.00 0.00 39.58 3.08
5574 7811 4.748701 AGTAGTTCCTTGGTCTCACCTAA 58.251 43.478 0.00 0.00 39.58 2.69
5575 7812 5.152934 AGTAGTTCCTTGGTCTCACCTAAA 58.847 41.667 0.00 0.00 39.58 1.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 2.578495 CACTCTAACGTACGTGGACAC 58.422 52.381 23.57 0.00 0.00 3.67
6 7 2.975410 CACTCTAACGTACGTGGACA 57.025 50.000 23.57 6.87 0.00 4.02
10 11 1.464687 CCGACCACTCTAACGTACGTG 60.465 57.143 23.57 11.89 0.00 4.49
11 12 0.798776 CCGACCACTCTAACGTACGT 59.201 55.000 16.72 16.72 0.00 3.57
12 13 1.078709 TCCGACCACTCTAACGTACG 58.921 55.000 15.01 15.01 0.00 3.67
13 14 3.772060 AATCCGACCACTCTAACGTAC 57.228 47.619 0.00 0.00 0.00 3.67
14 15 3.674138 GCAAATCCGACCACTCTAACGTA 60.674 47.826 0.00 0.00 0.00 3.57
15 16 2.929592 GCAAATCCGACCACTCTAACGT 60.930 50.000 0.00 0.00 0.00 3.99
16 17 1.659098 GCAAATCCGACCACTCTAACG 59.341 52.381 0.00 0.00 0.00 3.18
17 18 2.007608 GGCAAATCCGACCACTCTAAC 58.992 52.381 0.00 0.00 0.00 2.34
18 19 1.065709 GGGCAAATCCGACCACTCTAA 60.066 52.381 0.00 0.00 32.44 2.10
19 20 0.539986 GGGCAAATCCGACCACTCTA 59.460 55.000 0.00 0.00 32.44 2.43
20 21 1.299976 GGGCAAATCCGACCACTCT 59.700 57.895 0.00 0.00 32.44 3.24
21 22 1.002624 TGGGCAAATCCGACCACTC 60.003 57.895 0.00 0.00 40.00 3.51
22 23 3.166434 TGGGCAAATCCGACCACT 58.834 55.556 0.00 0.00 40.00 4.00
25 26 0.670162 CATGATGGGCAAATCCGACC 59.330 55.000 0.00 0.00 34.94 4.79
26 27 1.679139 TCATGATGGGCAAATCCGAC 58.321 50.000 0.00 0.00 34.94 4.79
27 28 2.624364 CAATCATGATGGGCAAATCCGA 59.376 45.455 9.46 0.00 34.94 4.55
28 29 2.363038 ACAATCATGATGGGCAAATCCG 59.637 45.455 14.72 0.00 34.94 4.18
29 30 4.828939 TCTACAATCATGATGGGCAAATCC 59.171 41.667 14.72 0.00 0.00 3.01
30 31 6.387465 CATCTACAATCATGATGGGCAAATC 58.613 40.000 14.72 0.00 35.32 2.17
31 32 5.279306 GCATCTACAATCATGATGGGCAAAT 60.279 40.000 14.72 0.18 38.30 2.32
32 33 4.038282 GCATCTACAATCATGATGGGCAAA 59.962 41.667 14.72 0.00 38.30 3.68
33 34 3.570975 GCATCTACAATCATGATGGGCAA 59.429 43.478 14.72 0.00 38.30 4.52
34 35 3.151554 GCATCTACAATCATGATGGGCA 58.848 45.455 14.72 1.13 38.30 5.36
35 36 3.418995 AGCATCTACAATCATGATGGGC 58.581 45.455 14.72 7.49 38.30 5.36
36 37 6.412214 TCATAGCATCTACAATCATGATGGG 58.588 40.000 14.72 10.11 38.30 4.00
37 38 6.037281 GCTCATAGCATCTACAATCATGATGG 59.963 42.308 9.46 9.03 41.89 3.51
38 39 6.237861 CGCTCATAGCATCTACAATCATGATG 60.238 42.308 9.46 6.30 42.58 3.07
39 40 5.811100 CGCTCATAGCATCTACAATCATGAT 59.189 40.000 1.18 1.18 42.58 2.45
40 41 5.047802 TCGCTCATAGCATCTACAATCATGA 60.048 40.000 0.00 0.00 42.58 3.07
41 42 5.166398 TCGCTCATAGCATCTACAATCATG 58.834 41.667 0.00 0.00 42.58 3.07
42 43 5.397142 TCGCTCATAGCATCTACAATCAT 57.603 39.130 0.00 0.00 42.58 2.45
43 44 4.853924 TCGCTCATAGCATCTACAATCA 57.146 40.909 0.00 0.00 42.58 2.57
44 45 4.387256 GGTTCGCTCATAGCATCTACAATC 59.613 45.833 0.00 0.00 42.58 2.67
45 46 4.202253 TGGTTCGCTCATAGCATCTACAAT 60.202 41.667 0.00 0.00 42.58 2.71
46 47 3.132111 TGGTTCGCTCATAGCATCTACAA 59.868 43.478 0.00 0.00 42.58 2.41
47 48 2.693074 TGGTTCGCTCATAGCATCTACA 59.307 45.455 0.00 0.00 42.58 2.74
48 49 3.312828 CTGGTTCGCTCATAGCATCTAC 58.687 50.000 0.00 0.00 42.58 2.59
49 50 2.288457 GCTGGTTCGCTCATAGCATCTA 60.288 50.000 0.00 0.00 42.58 1.98
50 51 1.539929 GCTGGTTCGCTCATAGCATCT 60.540 52.381 0.00 0.00 42.58 2.90
51 52 0.864455 GCTGGTTCGCTCATAGCATC 59.136 55.000 0.00 0.00 42.58 3.91
52 53 0.877649 CGCTGGTTCGCTCATAGCAT 60.878 55.000 0.00 0.00 42.58 3.79
53 54 1.519234 CGCTGGTTCGCTCATAGCA 60.519 57.895 0.00 0.00 42.58 3.49
54 55 3.313750 CGCTGGTTCGCTCATAGC 58.686 61.111 0.00 0.00 38.02 2.97
63 64 3.793144 CTTGGAGCGCGCTGGTTC 61.793 66.667 41.82 24.34 0.00 3.62
64 65 3.612247 ATCTTGGAGCGCGCTGGTT 62.612 57.895 41.82 16.10 0.00 3.67
65 66 4.087892 ATCTTGGAGCGCGCTGGT 62.088 61.111 41.82 18.53 0.00 4.00
66 67 3.267860 GATCTTGGAGCGCGCTGG 61.268 66.667 41.82 23.99 0.00 4.85
67 68 3.267860 GGATCTTGGAGCGCGCTG 61.268 66.667 41.82 24.59 0.00 5.18
68 69 3.729965 CTGGATCTTGGAGCGCGCT 62.730 63.158 37.28 37.28 0.00 5.92
69 70 3.267860 CTGGATCTTGGAGCGCGC 61.268 66.667 26.66 26.66 0.00 6.86
70 71 2.587194 CCTGGATCTTGGAGCGCG 60.587 66.667 0.00 0.00 0.00 6.86
71 72 2.203126 CCCTGGATCTTGGAGCGC 60.203 66.667 0.00 0.00 0.00 5.92
72 73 2.203126 GCCCTGGATCTTGGAGCG 60.203 66.667 0.00 0.00 0.00 5.03
73 74 1.153005 CAGCCCTGGATCTTGGAGC 60.153 63.158 0.00 7.60 0.00 4.70
74 75 0.179936 GTCAGCCCTGGATCTTGGAG 59.820 60.000 0.00 0.00 0.00 3.86
75 76 1.617018 CGTCAGCCCTGGATCTTGGA 61.617 60.000 0.00 0.00 0.00 3.53
76 77 1.153289 CGTCAGCCCTGGATCTTGG 60.153 63.158 0.00 0.00 0.00 3.61
77 78 0.467384 ATCGTCAGCCCTGGATCTTG 59.533 55.000 0.00 0.00 0.00 3.02
78 79 0.467384 CATCGTCAGCCCTGGATCTT 59.533 55.000 0.00 0.00 0.00 2.40
79 80 2.037620 GCATCGTCAGCCCTGGATCT 62.038 60.000 0.00 0.00 0.00 2.75
80 81 1.596477 GCATCGTCAGCCCTGGATC 60.596 63.158 0.00 0.00 0.00 3.36
81 82 2.507944 GCATCGTCAGCCCTGGAT 59.492 61.111 0.00 0.00 0.00 3.41
82 83 3.785859 GGCATCGTCAGCCCTGGA 61.786 66.667 0.00 0.00 46.50 3.86
88 89 2.887568 CGTGGAGGCATCGTCAGC 60.888 66.667 0.00 0.00 0.00 4.26
89 90 2.573869 ACGTGGAGGCATCGTCAG 59.426 61.111 0.00 0.00 32.26 3.51
91 92 2.537792 TTCGACGTGGAGGCATCGTC 62.538 60.000 0.00 1.46 46.57 4.20
92 93 2.632544 TTCGACGTGGAGGCATCGT 61.633 57.895 0.00 0.00 40.49 3.73
93 94 2.158959 GTTCGACGTGGAGGCATCG 61.159 63.158 0.00 0.00 35.91 3.84
94 95 0.460284 ATGTTCGACGTGGAGGCATC 60.460 55.000 11.74 0.00 0.00 3.91
95 96 0.740868 CATGTTCGACGTGGAGGCAT 60.741 55.000 11.74 11.74 31.65 4.40
96 97 1.374125 CATGTTCGACGTGGAGGCA 60.374 57.895 0.00 0.40 31.65 4.75
97 98 3.474806 CATGTTCGACGTGGAGGC 58.525 61.111 0.00 0.00 31.65 4.70
105 106 2.740714 GCCAGCGTCCATGTTCGAC 61.741 63.158 10.23 1.38 0.00 4.20
106 107 2.434185 GCCAGCGTCCATGTTCGA 60.434 61.111 10.23 0.00 0.00 3.71
107 108 1.647545 AATGCCAGCGTCCATGTTCG 61.648 55.000 0.00 0.00 0.00 3.95
108 109 0.099436 GAATGCCAGCGTCCATGTTC 59.901 55.000 0.00 0.00 0.00 3.18
109 110 1.315257 GGAATGCCAGCGTCCATGTT 61.315 55.000 7.18 0.00 0.00 2.71
110 111 1.750399 GGAATGCCAGCGTCCATGT 60.750 57.895 7.18 0.00 0.00 3.21
111 112 2.484062 GGGAATGCCAGCGTCCATG 61.484 63.158 12.65 0.00 35.15 3.66
112 113 2.124151 GGGAATGCCAGCGTCCAT 60.124 61.111 12.65 0.00 35.15 3.41
113 114 3.203086 TTGGGAATGCCAGCGTCCA 62.203 57.895 12.65 2.06 35.15 4.02
114 115 2.361104 TTGGGAATGCCAGCGTCC 60.361 61.111 0.00 4.06 35.15 4.79
115 116 0.392461 TAGTTGGGAATGCCAGCGTC 60.392 55.000 1.60 0.00 35.15 5.19
116 117 0.676782 GTAGTTGGGAATGCCAGCGT 60.677 55.000 1.60 0.00 35.15 5.07
117 118 0.676466 TGTAGTTGGGAATGCCAGCG 60.676 55.000 1.60 0.00 35.15 5.18
118 119 1.098050 CTGTAGTTGGGAATGCCAGC 58.902 55.000 0.00 0.00 35.15 4.85
119 120 2.496899 ACTGTAGTTGGGAATGCCAG 57.503 50.000 0.00 0.00 35.15 4.85
120 121 2.969821 AACTGTAGTTGGGAATGCCA 57.030 45.000 0.00 0.00 36.80 4.92
121 122 4.076394 TGTAAACTGTAGTTGGGAATGCC 58.924 43.478 0.00 0.00 38.44 4.40
122 123 4.156008 CCTGTAAACTGTAGTTGGGAATGC 59.844 45.833 0.00 0.00 38.44 3.56
123 124 5.181245 CACCTGTAAACTGTAGTTGGGAATG 59.819 44.000 0.00 0.00 38.44 2.67
124 125 5.072600 TCACCTGTAAACTGTAGTTGGGAAT 59.927 40.000 0.00 0.00 38.44 3.01
125 126 4.409574 TCACCTGTAAACTGTAGTTGGGAA 59.590 41.667 0.00 0.00 38.44 3.97
126 127 3.968649 TCACCTGTAAACTGTAGTTGGGA 59.031 43.478 0.00 0.00 38.44 4.37
127 128 4.062991 GTCACCTGTAAACTGTAGTTGGG 58.937 47.826 0.00 2.35 38.44 4.12
128 129 3.739300 CGTCACCTGTAAACTGTAGTTGG 59.261 47.826 0.00 0.00 38.44 3.77
129 130 3.739300 CCGTCACCTGTAAACTGTAGTTG 59.261 47.826 0.00 0.00 38.44 3.16
130 131 3.801293 GCCGTCACCTGTAAACTGTAGTT 60.801 47.826 0.00 0.00 40.50 2.24
131 132 2.288640 GCCGTCACCTGTAAACTGTAGT 60.289 50.000 0.00 0.00 0.00 2.73
132 133 2.029290 AGCCGTCACCTGTAAACTGTAG 60.029 50.000 0.00 0.00 0.00 2.74
133 134 1.965643 AGCCGTCACCTGTAAACTGTA 59.034 47.619 0.00 0.00 0.00 2.74
134 135 0.756903 AGCCGTCACCTGTAAACTGT 59.243 50.000 0.00 0.00 0.00 3.55
135 136 1.148310 CAGCCGTCACCTGTAAACTG 58.852 55.000 0.00 0.00 0.00 3.16
136 137 0.602905 GCAGCCGTCACCTGTAAACT 60.603 55.000 0.00 0.00 32.93 2.66
137 138 0.602905 AGCAGCCGTCACCTGTAAAC 60.603 55.000 0.00 0.00 32.93 2.01
138 139 0.107831 AAGCAGCCGTCACCTGTAAA 59.892 50.000 0.00 0.00 32.93 2.01
139 140 0.602638 CAAGCAGCCGTCACCTGTAA 60.603 55.000 0.00 0.00 32.93 2.41
140 141 1.005037 CAAGCAGCCGTCACCTGTA 60.005 57.895 0.00 0.00 32.93 2.74
141 142 2.281070 CAAGCAGCCGTCACCTGT 60.281 61.111 0.00 0.00 32.93 4.00
142 143 1.447317 AAACAAGCAGCCGTCACCTG 61.447 55.000 0.00 0.00 0.00 4.00
143 144 0.751643 AAAACAAGCAGCCGTCACCT 60.752 50.000 0.00 0.00 0.00 4.00
705 792 3.268330 GGGGAAAGTACGGATCTGAAAC 58.732 50.000 9.00 6.13 0.00 2.78
706 793 2.237893 GGGGGAAAGTACGGATCTGAAA 59.762 50.000 9.00 0.00 0.00 2.69
717 804 0.397564 AAAACTCGCGGGGGAAAGTA 59.602 50.000 12.42 0.00 0.00 2.24
726 813 0.793861 TTTCATCGGAAAACTCGCGG 59.206 50.000 6.13 0.00 39.96 6.46
727 814 2.806288 ATTTCATCGGAAAACTCGCG 57.194 45.000 0.00 0.00 45.52 5.87
757 844 0.968393 TGGGGGTTTCGCCTAAATGC 60.968 55.000 3.09 0.00 45.28 3.56
777 870 6.260050 GGGGTTTCTTCCTTGAAAACAAAATC 59.740 38.462 7.23 0.00 43.32 2.17
780 873 4.532521 TGGGGTTTCTTCCTTGAAAACAAA 59.467 37.500 7.23 0.00 43.32 2.83
786 879 4.588528 CAGATTTGGGGTTTCTTCCTTGAA 59.411 41.667 0.00 0.00 0.00 2.69
797 890 2.372172 ACGAAGTCTCAGATTTGGGGTT 59.628 45.455 0.00 0.00 29.74 4.11
808 901 1.666011 GTGAGGCCACGAAGTCTCA 59.334 57.895 5.01 9.19 41.61 3.27
831 924 1.511850 CACTCGCCACACTGATTTCA 58.488 50.000 0.00 0.00 0.00 2.69
879 975 4.516652 AAGGGGAGGATTCAAGATGAAG 57.483 45.455 0.00 0.00 40.05 3.02
899 999 6.502652 TCAGAATCATTTCAACGAGCAAAAA 58.497 32.000 0.00 0.00 34.08 1.94
902 1002 5.181811 ACATCAGAATCATTTCAACGAGCAA 59.818 36.000 0.00 0.00 34.08 3.91
949 1067 2.986728 ACAGGCCCTTCTTCTTTCCTAA 59.013 45.455 0.00 0.00 0.00 2.69
953 1071 1.539157 CCACAGGCCCTTCTTCTTTC 58.461 55.000 0.00 0.00 0.00 2.62
970 1088 4.124351 CGCGTCGTTAGCTCCCCA 62.124 66.667 0.00 0.00 0.00 4.96
978 1096 0.037512 TTTCCCCATTCGCGTCGTTA 60.038 50.000 5.77 0.00 0.00 3.18
981 1099 1.087202 TGATTTCCCCATTCGCGTCG 61.087 55.000 5.77 0.00 0.00 5.12
998 1116 2.345876 TCGAAGCGAAATGAAGCATGA 58.654 42.857 0.00 0.00 35.48 3.07
1089 1213 3.133946 TGCGAGTGTGCACCTGTA 58.866 55.556 15.69 0.00 40.62 2.74
1101 1225 1.725641 TTCAACTAGGTGCATGCGAG 58.274 50.000 14.09 9.95 0.00 5.03
1111 1235 4.701651 TGGATGCACAAGATTTCAACTAGG 59.298 41.667 0.00 0.00 0.00 3.02
1156 1280 4.184079 ACACAACATCTCGGTAGTAACC 57.816 45.455 0.00 0.00 42.95 2.85
1165 1289 3.951306 TGCAAAGAAACACAACATCTCG 58.049 40.909 0.00 0.00 0.00 4.04
1179 1310 1.891919 GGTGTCACGCCTGCAAAGA 60.892 57.895 0.00 0.00 0.00 2.52
1181 1312 2.904866 GGGTGTCACGCCTGCAAA 60.905 61.111 7.49 0.00 33.98 3.68
1189 1321 0.790207 CGAAGAACATGGGTGTCACG 59.210 55.000 0.00 0.00 37.67 4.35
1231 1366 1.221840 CATCGCAGGGCCACTAACT 59.778 57.895 6.18 0.00 0.00 2.24
1277 1436 1.670083 CTGCTGCTGCTGCACTGTA 60.670 57.895 27.01 8.92 45.31 2.74
1281 1440 4.039357 CACCTGCTGCTGCTGCAC 62.039 66.667 27.01 11.90 45.31 4.57
1315 1474 1.661463 TCAGGGGCTGAGACTGAATT 58.339 50.000 0.00 0.00 38.22 2.17
1316 1475 1.661463 TTCAGGGGCTGAGACTGAAT 58.339 50.000 9.54 0.00 43.90 2.57
1321 1480 0.615331 TGTCATTCAGGGGCTGAGAC 59.385 55.000 0.00 0.00 41.75 3.36
1393 1552 7.394359 TCCACGGGGTATATAAATAGACAGTAC 59.606 40.741 2.12 0.00 34.93 2.73
1404 1568 2.708037 AGCCTCCACGGGGTATATAA 57.292 50.000 2.12 0.00 35.09 0.98
1417 1734 3.118223 AGAACATAAGCCAGTAAGCCTCC 60.118 47.826 0.00 0.00 0.00 4.30
1454 1771 7.089538 CACAACAAAATGCAGTACATATCCAA 58.910 34.615 0.00 0.00 38.34 3.53
1494 1811 1.770658 AGCAATAGCCATACAGCCTCA 59.229 47.619 0.00 0.00 43.56 3.86
1504 1821 1.354031 TCCTTTGGACAGCAATAGCCA 59.646 47.619 0.00 0.00 43.56 4.75
1518 1835 3.960571 AGGATCCACATGAACTCCTTTG 58.039 45.455 15.82 0.00 32.38 2.77
1528 1845 4.157840 TCGGTAATCGATAGGATCCACATG 59.842 45.833 15.82 0.81 43.74 3.21
1543 1860 5.301298 AGTGTAATAGTGTCCCTCGGTAATC 59.699 44.000 0.00 0.00 0.00 1.75
1550 1867 3.197983 AGCCAAGTGTAATAGTGTCCCTC 59.802 47.826 0.00 0.00 0.00 4.30
1559 1877 3.694043 TCACAGCAGCCAAGTGTAATA 57.306 42.857 9.35 0.00 34.94 0.98
1579 1897 1.056660 ACAACCTGATCGTGGTCCTT 58.943 50.000 10.14 0.00 36.69 3.36
1587 1905 5.520288 CAGTAGAACCATTACAACCTGATCG 59.480 44.000 0.00 0.00 0.00 3.69
1649 1967 0.384669 AGATACGCGTCCAGTTAGGC 59.615 55.000 18.63 0.00 37.29 3.93
1661 1979 8.634475 TGCATTTCTGATATATACAGATACGC 57.366 34.615 12.65 12.42 42.68 4.42
1742 2063 1.632409 ACATCCCATCAAGTGCTCTGT 59.368 47.619 0.00 0.00 0.00 3.41
1745 2066 4.458989 TGTTAAACATCCCATCAAGTGCTC 59.541 41.667 0.00 0.00 0.00 4.26
1746 2067 4.406456 TGTTAAACATCCCATCAAGTGCT 58.594 39.130 0.00 0.00 0.00 4.40
1798 2119 7.967908 TGGGCTGAAAAAGGAAATAAATTACA 58.032 30.769 0.00 0.00 0.00 2.41
1805 2126 7.038373 AGCTTTATTGGGCTGAAAAAGGAAATA 60.038 33.333 0.00 0.00 37.41 1.40
1833 2154 3.343617 AGTGGTGAAAATACGTGATGGG 58.656 45.455 0.00 0.00 0.00 4.00
1834 2155 4.000325 TGAGTGGTGAAAATACGTGATGG 59.000 43.478 0.00 0.00 0.00 3.51
1852 2173 2.235650 CCCACAGACAGTCATCATGAGT 59.764 50.000 2.66 0.00 0.00 3.41
1909 2230 8.565896 AATGCATCAAGTCAGTAAGTTATTGA 57.434 30.769 0.00 4.10 0.00 2.57
1915 2236 7.516198 AAGAAAATGCATCAAGTCAGTAAGT 57.484 32.000 0.00 0.00 0.00 2.24
1946 2267 9.918630 AATCAGGACACATTCAAATAGAAAAAG 57.081 29.630 0.00 0.00 40.22 2.27
2044 2374 8.721478 GGTACGATTTATGCAAGTAATCATGAT 58.279 33.333 1.18 1.18 0.00 2.45
2045 2375 7.931407 AGGTACGATTTATGCAAGTAATCATGA 59.069 33.333 0.00 0.00 0.00 3.07
2046 2376 8.087982 AGGTACGATTTATGCAAGTAATCATG 57.912 34.615 14.98 0.00 0.00 3.07
2047 2377 8.150945 AGAGGTACGATTTATGCAAGTAATCAT 58.849 33.333 14.98 6.26 0.00 2.45
2048 2378 7.497595 AGAGGTACGATTTATGCAAGTAATCA 58.502 34.615 14.98 0.00 0.00 2.57
2049 2379 7.948278 AGAGGTACGATTTATGCAAGTAATC 57.052 36.000 0.00 0.00 0.00 1.75
2050 2380 9.477484 CTTAGAGGTACGATTTATGCAAGTAAT 57.523 33.333 0.00 0.00 0.00 1.89
2051 2381 7.437267 GCTTAGAGGTACGATTTATGCAAGTAA 59.563 37.037 0.00 0.00 0.00 2.24
2052 2382 6.921857 GCTTAGAGGTACGATTTATGCAAGTA 59.078 38.462 0.00 0.00 0.00 2.24
2053 2383 5.753921 GCTTAGAGGTACGATTTATGCAAGT 59.246 40.000 0.00 0.00 0.00 3.16
2054 2384 5.986135 AGCTTAGAGGTACGATTTATGCAAG 59.014 40.000 0.00 0.00 0.00 4.01
2055 2385 5.914033 AGCTTAGAGGTACGATTTATGCAA 58.086 37.500 0.00 0.00 0.00 4.08
2066 2396 4.826733 GGAGTAGGGTAAGCTTAGAGGTAC 59.173 50.000 6.38 6.74 0.00 3.34
2076 2406 4.021632 CCTATAAACCGGAGTAGGGTAAGC 60.022 50.000 9.46 0.00 36.57 3.09
2077 2407 4.021632 GCCTATAAACCGGAGTAGGGTAAG 60.022 50.000 9.46 0.00 36.57 2.34
2088 2419 3.565905 CGGTACTAGCCTATAAACCGG 57.434 52.381 0.00 0.00 44.59 5.28
2090 2421 5.242393 TCACATCGGTACTAGCCTATAAACC 59.758 44.000 0.00 0.00 0.00 3.27
2091 2422 6.323203 TCACATCGGTACTAGCCTATAAAC 57.677 41.667 0.00 0.00 0.00 2.01
2099 2430 0.381089 ACGCTCACATCGGTACTAGC 59.619 55.000 0.00 0.00 0.00 3.42
2102 2433 0.179171 CGAACGCTCACATCGGTACT 60.179 55.000 0.00 0.00 33.15 2.73
2105 2436 1.733041 CACGAACGCTCACATCGGT 60.733 57.895 0.00 0.00 40.71 4.69
2115 2446 1.918609 GTCCAGAGTAATCACGAACGC 59.081 52.381 0.00 0.00 0.00 4.84
2118 2449 3.576982 AGTTGGTCCAGAGTAATCACGAA 59.423 43.478 0.00 0.00 0.00 3.85
2146 2477 2.662866 CCATCATCAACAGCCTCCATT 58.337 47.619 0.00 0.00 0.00 3.16
2148 2479 0.394762 GCCATCATCAACAGCCTCCA 60.395 55.000 0.00 0.00 0.00 3.86
2160 2491 1.750778 CAAAGCCGGTTAAGCCATCAT 59.249 47.619 1.90 0.00 36.97 2.45
2175 2506 5.730010 GCATCTAGCAAGATCTTGACAAAGC 60.730 44.000 34.43 24.61 40.65 3.51
2204 2535 2.579400 GGTTAGGGATGTTAGGGTTGGT 59.421 50.000 0.00 0.00 0.00 3.67
2230 2561 3.309954 GCAAACAGAGAGACGAAAACAGT 59.690 43.478 0.00 0.00 0.00 3.55
2233 2565 3.303395 CCAGCAAACAGAGAGACGAAAAC 60.303 47.826 0.00 0.00 0.00 2.43
2235 2567 2.158957 ACCAGCAAACAGAGAGACGAAA 60.159 45.455 0.00 0.00 0.00 3.46
2242 2574 5.661458 GTTATAGCTACCAGCAAACAGAGA 58.339 41.667 0.00 0.00 45.56 3.10
2245 2577 3.001330 GCGTTATAGCTACCAGCAAACAG 59.999 47.826 0.00 1.54 45.56 3.16
2261 2593 5.482908 AGATCACAACTCTCAAAGCGTTAT 58.517 37.500 0.00 0.00 0.00 1.89
2265 2597 3.742882 TCAAGATCACAACTCTCAAAGCG 59.257 43.478 0.00 0.00 0.00 4.68
2288 2620 0.832135 GGATATGCGGGGAGACAGGA 60.832 60.000 0.00 0.00 0.00 3.86
2289 2621 1.674057 GGATATGCGGGGAGACAGG 59.326 63.158 0.00 0.00 0.00 4.00
2291 2623 0.541998 ATCGGATATGCGGGGAGACA 60.542 55.000 16.98 0.00 0.00 3.41
2292 2624 0.108615 CATCGGATATGCGGGGAGAC 60.109 60.000 16.98 0.00 0.00 3.36
2304 2637 1.492176 AGATTCCACCAAGCATCGGAT 59.508 47.619 0.00 0.00 0.00 4.18
2307 2640 1.869767 GCTAGATTCCACCAAGCATCG 59.130 52.381 0.00 0.00 33.38 3.84
2314 2647 3.115390 AGGCTTTAGCTAGATTCCACCA 58.885 45.455 0.00 0.00 41.70 4.17
2315 2648 3.389656 AGAGGCTTTAGCTAGATTCCACC 59.610 47.826 0.00 0.00 41.70 4.61
2318 2651 3.398406 GCAGAGGCTTTAGCTAGATTCC 58.602 50.000 0.00 0.00 41.70 3.01
2357 2690 3.811722 TTCGACACATGAACAATCAGC 57.188 42.857 0.00 0.00 39.39 4.26
2394 2728 9.950496 CCAGATGCAACTAGAATATAAACCTAT 57.050 33.333 0.00 0.00 0.00 2.57
2420 2754 3.865164 CCAAACTCTGAAGCAAACCAAAC 59.135 43.478 0.00 0.00 0.00 2.93
2442 2776 2.017782 TCTGACTAGGTCGATGCAGTC 58.982 52.381 13.37 13.37 38.30 3.51
2450 2784 1.763968 TGGGATGTCTGACTAGGTCG 58.236 55.000 9.51 0.00 34.95 4.79
2490 2824 1.751924 TGTAAAACCTGTTGCACCACC 59.248 47.619 0.00 0.00 0.00 4.61
2494 2828 6.494893 TGAGATATGTAAAACCTGTTGCAC 57.505 37.500 0.00 0.00 0.00 4.57
2495 2829 6.037062 CGATGAGATATGTAAAACCTGTTGCA 59.963 38.462 0.00 0.00 0.00 4.08
2496 2830 6.422223 CGATGAGATATGTAAAACCTGTTGC 58.578 40.000 0.00 0.00 0.00 4.17
2536 2870 6.430925 TGCTGTATCAAATTTTGTGAGCTACT 59.569 34.615 8.89 0.00 0.00 2.57
2541 2875 5.706916 AGCTGCTGTATCAAATTTTGTGAG 58.293 37.500 0.00 3.06 0.00 3.51
2553 2887 6.705381 AGATGAGATGTAAAAGCTGCTGTATC 59.295 38.462 1.35 0.00 0.00 2.24
2559 2893 5.114780 TCTCAGATGAGATGTAAAAGCTGC 58.885 41.667 8.46 0.00 45.48 5.25
2604 2938 8.846943 AGAGAAACAACAAAAGTGGAATTTTT 57.153 26.923 0.00 0.00 36.07 1.94
2606 2940 9.586435 CTTAGAGAAACAACAAAAGTGGAATTT 57.414 29.630 0.00 0.00 0.00 1.82
2608 2942 8.406297 GTCTTAGAGAAACAACAAAAGTGGAAT 58.594 33.333 0.00 0.00 0.00 3.01
2644 2978 6.846325 AGTCAGTGCAGTTAAGTAAAAGTC 57.154 37.500 0.00 0.00 0.00 3.01
2645 2979 7.723324 TCTAGTCAGTGCAGTTAAGTAAAAGT 58.277 34.615 0.00 0.00 0.00 2.66
2646 2980 8.589335 TTCTAGTCAGTGCAGTTAAGTAAAAG 57.411 34.615 0.00 0.00 0.00 2.27
2647 2981 9.555727 AATTCTAGTCAGTGCAGTTAAGTAAAA 57.444 29.630 0.00 0.00 0.00 1.52
2648 2982 8.988934 CAATTCTAGTCAGTGCAGTTAAGTAAA 58.011 33.333 0.00 0.00 0.00 2.01
2649 2983 7.602644 CCAATTCTAGTCAGTGCAGTTAAGTAA 59.397 37.037 0.00 0.00 0.00 2.24
2650 2984 7.039293 TCCAATTCTAGTCAGTGCAGTTAAGTA 60.039 37.037 0.00 0.00 0.00 2.24
2658 2992 3.196469 CCTCTCCAATTCTAGTCAGTGCA 59.804 47.826 0.00 0.00 0.00 4.57
2659 2993 3.431486 CCCTCTCCAATTCTAGTCAGTGC 60.431 52.174 0.00 0.00 0.00 4.40
2735 3070 1.968493 TCCCACAGACAGTAACAGTCC 59.032 52.381 0.00 0.00 36.68 3.85
2762 3097 8.029642 ACTTATGAGAAAATGACCGTTTACTG 57.970 34.615 0.00 0.00 0.00 2.74
2768 3103 7.444183 TCAAGAAACTTATGAGAAAATGACCGT 59.556 33.333 0.00 0.00 0.00 4.83
2769 3104 7.806690 TCAAGAAACTTATGAGAAAATGACCG 58.193 34.615 0.00 0.00 0.00 4.79
2770 3105 9.565213 CATCAAGAAACTTATGAGAAAATGACC 57.435 33.333 0.00 0.00 0.00 4.02
2818 3153 6.054295 TCCAGTGCAAAAATAACAAAGCAAT 58.946 32.000 0.00 0.00 33.37 3.56
2820 3155 5.016051 TCCAGTGCAAAAATAACAAAGCA 57.984 34.783 0.00 0.00 0.00 3.91
2890 3225 1.202818 TCTGCTGCTAGCTCGATAGGA 60.203 52.381 17.23 4.62 42.97 2.94
2916 3251 3.398954 TTTGAACAAGCTTGTGTCGAC 57.601 42.857 31.73 19.49 41.31 4.20
2941 3276 9.850628 GATTTAAATGGTTTTGTCCTAGGTAAC 57.149 33.333 9.08 9.06 0.00 2.50
2944 3279 8.170730 AGAGATTTAAATGGTTTTGTCCTAGGT 58.829 33.333 9.08 0.00 0.00 3.08
2960 3295 9.461312 AACACTACAATATGGCAGAGATTTAAA 57.539 29.630 0.00 0.00 0.00 1.52
2975 3310 4.708576 TTGTCCCACCAACACTACAATA 57.291 40.909 0.00 0.00 0.00 1.90
2980 3315 4.708576 TGTAATTGTCCCACCAACACTA 57.291 40.909 0.00 0.00 0.00 2.74
2988 3323 6.431234 AGAATTCAGAGTTGTAATTGTCCCAC 59.569 38.462 8.44 0.00 0.00 4.61
3005 3340 8.248945 AGGAGCATTGATTTTTGTAGAATTCAG 58.751 33.333 8.44 0.00 0.00 3.02
3014 3349 4.154942 ACCTGAGGAGCATTGATTTTTGT 58.845 39.130 4.99 0.00 0.00 2.83
3033 3368 8.046708 TCATGCATTAAACTTGAGTACATACCT 58.953 33.333 0.00 0.00 0.00 3.08
3095 3433 4.522722 AGCTATCTATAAGACGGGCAAC 57.477 45.455 0.00 0.00 0.00 4.17
3122 3460 5.462530 TTACTCTGTCAATGGAGAACGAA 57.537 39.130 0.00 0.00 34.11 3.85
3123 3461 5.462530 TTTACTCTGTCAATGGAGAACGA 57.537 39.130 0.00 0.00 34.11 3.85
3127 3465 7.226720 GTGAACTTTTTACTCTGTCAATGGAGA 59.773 37.037 0.00 0.00 34.11 3.71
3132 3470 6.238374 CGTGGTGAACTTTTTACTCTGTCAAT 60.238 38.462 0.00 0.00 0.00 2.57
3134 3472 4.569162 CGTGGTGAACTTTTTACTCTGTCA 59.431 41.667 0.00 0.00 0.00 3.58
3138 3476 5.425630 ACTTCGTGGTGAACTTTTTACTCT 58.574 37.500 0.00 0.00 31.87 3.24
3150 3488 5.394224 TGAATATGTGTACTTCGTGGTGA 57.606 39.130 0.00 0.00 0.00 4.02
3152 3490 5.972935 TCATGAATATGTGTACTTCGTGGT 58.027 37.500 11.82 0.00 36.82 4.16
3154 3492 7.525688 AGTTCATGAATATGTGTACTTCGTG 57.474 36.000 12.12 7.39 37.29 4.35
3194 3532 7.709601 TGAAGGAGGATGGAGTATAAGCTATA 58.290 38.462 0.00 0.00 0.00 1.31
3207 3545 2.098117 GCGAACAATTGAAGGAGGATGG 59.902 50.000 13.59 0.00 0.00 3.51
3226 3564 1.066858 AGTGACATAGTCCAAGTGGCG 60.067 52.381 0.00 0.00 34.44 5.69
3244 3582 2.043604 TAGCAGCACAGTGCCACAGT 62.044 55.000 22.41 0.00 46.52 3.55
3245 3583 1.296755 CTAGCAGCACAGTGCCACAG 61.297 60.000 22.41 10.38 46.52 3.66
3246 3584 1.301953 CTAGCAGCACAGTGCCACA 60.302 57.895 22.41 4.33 46.52 4.17
3247 3585 2.684843 GCTAGCAGCACAGTGCCAC 61.685 63.158 22.41 14.26 46.52 5.01
3248 3586 2.359107 GCTAGCAGCACAGTGCCA 60.359 61.111 22.41 4.33 46.52 4.92
3279 3617 1.362406 GAGAACGCCTAACAGCAGCC 61.362 60.000 0.00 0.00 0.00 4.85
3289 3627 2.028130 CTGTCCTATCAGAGAACGCCT 58.972 52.381 0.00 0.00 37.61 5.52
3393 3735 4.399219 GAACCCCTATGAGGAATAAAGCC 58.601 47.826 0.00 0.00 37.67 4.35
3418 3761 9.141400 GTTCGATTGTTAGGCCTCTATATAAAG 57.859 37.037 9.68 0.00 0.00 1.85
3441 5612 9.956640 ATTAGGGATGAGATCTATGATTTGTTC 57.043 33.333 0.00 0.00 0.00 3.18
3447 5618 6.677521 AGCCAATTAGGGATGAGATCTATGAT 59.322 38.462 0.00 0.00 38.09 2.45
3510 5681 9.442047 CCAATCTTTATGTTAGGTGATCTATCC 57.558 37.037 0.00 0.00 0.00 2.59
3517 5688 6.884295 CAGTTCCCAATCTTTATGTTAGGTGA 59.116 38.462 0.00 0.00 0.00 4.02
3529 5700 0.609131 CCACCGCAGTTCCCAATCTT 60.609 55.000 0.00 0.00 0.00 2.40
3549 5720 4.514506 CATTGCGTACGGAAATACATGTC 58.485 43.478 25.91 0.12 0.00 3.06
3550 5721 3.242608 GCATTGCGTACGGAAATACATGT 60.243 43.478 25.91 2.69 0.00 3.21
3564 5739 4.822036 TTACACTTTTACAGCATTGCGT 57.178 36.364 2.38 7.13 0.00 5.24
3638 5813 9.948964 CCAATCTCAACATATATCACCTTCATA 57.051 33.333 0.00 0.00 0.00 2.15
3639 5814 7.392673 GCCAATCTCAACATATATCACCTTCAT 59.607 37.037 0.00 0.00 0.00 2.57
3640 5815 6.712095 GCCAATCTCAACATATATCACCTTCA 59.288 38.462 0.00 0.00 0.00 3.02
3641 5816 6.712095 TGCCAATCTCAACATATATCACCTTC 59.288 38.462 0.00 0.00 0.00 3.46
3642 5817 6.604171 TGCCAATCTCAACATATATCACCTT 58.396 36.000 0.00 0.00 0.00 3.50
3643 5818 6.191657 TGCCAATCTCAACATATATCACCT 57.808 37.500 0.00 0.00 0.00 4.00
3644 5819 6.624423 GCATGCCAATCTCAACATATATCACC 60.624 42.308 6.36 0.00 0.00 4.02
3645 5820 6.320171 GCATGCCAATCTCAACATATATCAC 58.680 40.000 6.36 0.00 0.00 3.06
3646 5821 5.416639 GGCATGCCAATCTCAACATATATCA 59.583 40.000 32.08 0.00 35.81 2.15
3647 5822 5.651139 AGGCATGCCAATCTCAACATATATC 59.349 40.000 37.18 4.63 38.92 1.63
3648 5823 5.577100 AGGCATGCCAATCTCAACATATAT 58.423 37.500 37.18 8.89 38.92 0.86
3649 5824 4.989277 AGGCATGCCAATCTCAACATATA 58.011 39.130 37.18 0.00 38.92 0.86
3650 5825 3.840991 AGGCATGCCAATCTCAACATAT 58.159 40.909 37.18 10.08 38.92 1.78
3669 5844 3.932710 TCGCTAGTTTTACATGCTCAAGG 59.067 43.478 0.00 0.00 0.00 3.61
3764 5969 8.210946 ACTAAATATGTAGCCAGCTGTCAATTA 58.789 33.333 13.81 7.06 0.00 1.40
3776 5981 7.936584 TGCATTACCAAACTAAATATGTAGCC 58.063 34.615 0.00 0.00 0.00 3.93
3784 5989 9.646522 ATCTAATCCTGCATTACCAAACTAAAT 57.353 29.630 0.00 0.00 0.00 1.40
3790 5995 6.321181 GGAACATCTAATCCTGCATTACCAAA 59.679 38.462 0.00 0.00 32.75 3.28
3804 6009 2.093500 TGCAGCTCGTGGAACATCTAAT 60.093 45.455 0.00 0.00 44.52 1.73
3870 6080 9.639601 AGTACTTGAAAACCAAAAAGAGAAAAG 57.360 29.630 0.00 0.00 33.76 2.27
3881 6091 4.165372 ACAGAGGGAGTACTTGAAAACCAA 59.835 41.667 0.00 0.00 0.00 3.67
3884 6094 4.755629 GGAACAGAGGGAGTACTTGAAAAC 59.244 45.833 0.00 0.00 0.00 2.43
3934 6144 8.567285 TTATTGTTGTGGTTTGGTTCAAATTT 57.433 26.923 0.00 0.00 35.74 1.82
3936 6146 8.744568 AATTATTGTTGTGGTTTGGTTCAAAT 57.255 26.923 0.00 0.00 35.74 2.32
3939 6149 7.066284 CCAAAATTATTGTTGTGGTTTGGTTCA 59.934 33.333 0.00 0.00 38.99 3.18
3940 6150 7.281100 TCCAAAATTATTGTTGTGGTTTGGTTC 59.719 33.333 10.99 0.00 42.57 3.62
3942 6152 6.653989 TCCAAAATTATTGTTGTGGTTTGGT 58.346 32.000 10.99 0.00 42.57 3.67
3943 6153 7.559590 TTCCAAAATTATTGTTGTGGTTTGG 57.440 32.000 6.02 6.02 43.08 3.28
3944 6154 8.074972 CCATTCCAAAATTATTGTTGTGGTTTG 58.925 33.333 0.00 0.00 0.00 2.93
3952 6162 6.730507 ACTCCCTCCATTCCAAAATTATTGTT 59.269 34.615 0.00 0.00 0.00 2.83
3993 6203 5.304101 CCAGATATAACAGCAGACCTCTTCT 59.696 44.000 0.00 0.00 33.33 2.85
3996 6206 3.323403 GCCAGATATAACAGCAGACCTCT 59.677 47.826 0.00 0.00 0.00 3.69
4002 6212 4.881019 AGGTAGCCAGATATAACAGCAG 57.119 45.455 0.00 0.00 0.00 4.24
4043 6253 1.481901 TAAACGCCAGCCCTGTACCA 61.482 55.000 0.00 0.00 0.00 3.25
4044 6254 0.743345 CTAAACGCCAGCCCTGTACC 60.743 60.000 0.00 0.00 0.00 3.34
4045 6255 0.036671 ACTAAACGCCAGCCCTGTAC 60.037 55.000 0.00 0.00 0.00 2.90
4053 6263 8.234546 ACTACAAAATATGAAACTAAACGCCAG 58.765 33.333 0.00 0.00 0.00 4.85
4103 6313 1.283029 ACATGAAGCAGCCTGGTACAT 59.717 47.619 0.00 0.00 38.20 2.29
4115 6325 5.039333 GGCTCAATGATTACAACATGAAGC 58.961 41.667 0.00 0.00 36.38 3.86
4123 6333 5.791666 TGCATTTTGGCTCAATGATTACAA 58.208 33.333 11.86 0.00 34.05 2.41
4135 6345 1.200519 ATCTGGCATGCATTTTGGCT 58.799 45.000 21.36 0.00 40.12 4.75
4136 6346 2.750948 CTATCTGGCATGCATTTTGGC 58.249 47.619 21.36 0.00 39.89 4.52
4137 6347 2.750948 GCTATCTGGCATGCATTTTGG 58.249 47.619 21.36 6.30 0.00 3.28
4138 6348 2.033675 TCGCTATCTGGCATGCATTTTG 59.966 45.455 21.36 5.78 0.00 2.44
4139 6349 2.292569 CTCGCTATCTGGCATGCATTTT 59.707 45.455 21.36 3.81 0.00 1.82
4140 6350 1.878088 CTCGCTATCTGGCATGCATTT 59.122 47.619 21.36 3.42 0.00 2.32
4141 6351 1.202734 ACTCGCTATCTGGCATGCATT 60.203 47.619 21.36 3.04 0.00 3.56
4142 6352 0.395686 ACTCGCTATCTGGCATGCAT 59.604 50.000 21.36 7.16 0.00 3.96
4143 6353 0.249615 GACTCGCTATCTGGCATGCA 60.250 55.000 21.36 4.79 0.00 3.96
4144 6354 0.249615 TGACTCGCTATCTGGCATGC 60.250 55.000 9.90 9.90 0.00 4.06
4145 6355 1.202452 TGTGACTCGCTATCTGGCATG 60.202 52.381 0.00 0.00 0.00 4.06
4146 6356 1.068281 CTGTGACTCGCTATCTGGCAT 59.932 52.381 0.00 0.00 0.00 4.40
4164 6374 6.242508 CTCATCATTGAGGTATGCAATCTG 57.757 41.667 0.00 0.00 44.78 2.90
4175 6385 6.568653 GATGCATCATCAACTCATCATTGAGG 60.569 42.308 21.92 0.00 44.76 3.86
4176 6386 6.205658 AGATGCATCATCAACTCATCATTGAG 59.794 38.462 27.81 1.55 46.55 3.02
4177 6387 6.062095 AGATGCATCATCAACTCATCATTGA 58.938 36.000 27.81 0.00 42.72 2.57
4187 6397 5.510674 CGACAAAGAAAGATGCATCATCAAC 59.489 40.000 27.81 13.76 42.72 3.18
4206 6416 4.155099 CAGTACACAAATAATGGCCGACAA 59.845 41.667 0.00 0.00 0.00 3.18
4233 6443 6.510536 AGCGGTAAGTAATCATAGTGGTAAC 58.489 40.000 0.00 0.00 0.00 2.50
4238 6448 7.772332 AAAGAAGCGGTAAGTAATCATAGTG 57.228 36.000 0.00 0.00 0.00 2.74
4250 6460 7.335924 ACTTATCATGCTAAAAAGAAGCGGTAA 59.664 33.333 0.00 0.00 43.11 2.85
4289 6499 7.988599 ACAGGTACATAGTACAAACTGTCAAAA 59.011 33.333 9.27 0.00 36.36 2.44
4313 6523 2.891112 CAAGCAAAAAGACCAGCAACA 58.109 42.857 0.00 0.00 0.00 3.33
4370 6580 6.558009 CCCTCATTGAAACTTGTATCATGTG 58.442 40.000 0.00 0.00 0.00 3.21
4388 6598 2.700371 TCATATCGACAAGTGCCCTCAT 59.300 45.455 0.00 0.00 0.00 2.90
4420 6630 3.238232 TGCATGAGAGGACTGCAAC 57.762 52.632 0.00 0.00 42.53 4.17
4519 6729 0.804989 CACTTTCCATTCTCACCGCC 59.195 55.000 0.00 0.00 0.00 6.13
4606 6821 1.403323 GCAACAATAGCTCTGCCCTTC 59.597 52.381 0.00 0.00 0.00 3.46
4611 6826 3.615496 CCATTTTGCAACAATAGCTCTGC 59.385 43.478 0.00 0.00 35.32 4.26
4619 6834 3.807071 GGAAACGACCATTTTGCAACAAT 59.193 39.130 0.00 0.00 0.00 2.71
4648 6863 1.375908 CACACCTGTGCCGCATACT 60.376 57.895 0.00 0.00 39.39 2.12
4659 6874 3.189287 GCAAGATAGAAACACCACACCTG 59.811 47.826 0.00 0.00 0.00 4.00
4768 6988 1.600636 CAAGCTGGGCGGAAACAGA 60.601 57.895 0.00 0.00 36.86 3.41
4770 6990 1.452145 GAACAAGCTGGGCGGAAACA 61.452 55.000 0.00 0.00 0.00 2.83
4771 6991 1.285950 GAACAAGCTGGGCGGAAAC 59.714 57.895 0.00 0.00 0.00 2.78
4773 6993 1.896660 GTGAACAAGCTGGGCGGAA 60.897 57.895 0.00 0.00 0.00 4.30
4774 6994 2.281484 GTGAACAAGCTGGGCGGA 60.281 61.111 0.00 0.00 0.00 5.54
4775 6995 3.726517 CGTGAACAAGCTGGGCGG 61.727 66.667 0.00 0.00 0.00 6.13
4776 6996 1.781025 TTTCGTGAACAAGCTGGGCG 61.781 55.000 0.00 0.00 0.00 6.13
4777 6997 0.383949 TTTTCGTGAACAAGCTGGGC 59.616 50.000 0.00 0.00 0.00 5.36
4778 6998 1.946768 TCTTTTCGTGAACAAGCTGGG 59.053 47.619 0.00 0.00 0.00 4.45
4779 6999 2.872245 TCTCTTTTCGTGAACAAGCTGG 59.128 45.455 0.00 0.00 0.00 4.85
4814 7034 1.135915 CTCTCCATGACGGTCTCCTTG 59.864 57.143 9.88 2.43 35.57 3.61
4836 7056 2.083774 GCCATGTGAATTTGACGGAGA 58.916 47.619 0.00 0.00 0.00 3.71
4877 7097 4.705507 AGAATGATGAAGACAGCTGCAAAT 59.294 37.500 15.27 0.24 32.07 2.32
4954 7174 3.131577 TGGCATTAACGGTAGAGATTCGT 59.868 43.478 0.00 0.00 38.89 3.85
5049 7272 4.833478 AAGTGCTTCACTATCCAGATGT 57.167 40.909 0.00 0.00 44.62 3.06
5176 7400 4.746611 AGCACGTTAACAAAGTACCAGTAC 59.253 41.667 6.39 0.00 36.35 2.73
5189 7413 1.597663 AGTCACTTGCAGCACGTTAAC 59.402 47.619 0.80 4.19 0.00 2.01
5251 7475 7.232534 TGCAATGGACTTAACAGTAGGAAAAAT 59.767 33.333 0.00 0.00 31.22 1.82
5267 7492 8.752005 ATAACAATAGTACAATGCAATGGACT 57.248 30.769 22.93 22.93 46.28 3.85
5276 7501 9.454585 CTTGATGCCAATAACAATAGTACAATG 57.545 33.333 0.00 0.00 0.00 2.82
5281 7506 8.465999 CCAAACTTGATGCCAATAACAATAGTA 58.534 33.333 0.00 0.00 0.00 1.82
5283 7508 7.322664 ACCAAACTTGATGCCAATAACAATAG 58.677 34.615 0.00 0.00 0.00 1.73
5285 7510 6.112927 ACCAAACTTGATGCCAATAACAAT 57.887 33.333 0.00 0.00 0.00 2.71
5291 7516 6.859420 GTTTTAACCAAACTTGATGCCAAT 57.141 33.333 0.00 0.00 41.58 3.16
5337 7563 3.985925 AGACGACGACATTTCCAAAGTAC 59.014 43.478 0.00 0.00 0.00 2.73
5340 7566 3.318017 AGAGACGACGACATTTCCAAAG 58.682 45.455 0.00 0.00 0.00 2.77
5366 7592 5.401550 CAGTGACATGGCGATAAAACAATT 58.598 37.500 0.00 0.00 0.00 2.32
5374 7600 1.190643 TGTCCAGTGACATGGCGATA 58.809 50.000 0.00 0.00 46.40 2.92
5402 7628 2.939756 TGCAAGCACGACTTCAACTAAA 59.060 40.909 0.00 0.00 36.04 1.85
5426 7652 7.706159 TCTAAACGAGAAAATTATGCATGCAT 58.294 30.769 33.92 33.92 40.19 3.96
5450 7676 9.952188 ACTTCTTTACTATGTCTTTTTGCTTTC 57.048 29.630 0.00 0.00 0.00 2.62
5515 7749 6.072733 GCACATGCACAAATATTGTTTCAAC 58.927 36.000 0.00 0.00 43.23 3.18
5544 7778 2.028930 ACCAAGGAACTACTCAGCGAAG 60.029 50.000 0.00 0.00 38.49 3.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.