Multiple sequence alignment - TraesCS5D01G069500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G069500 chr5D 100.000 6070 0 0 1 6070 66770590 66764521 0.000000e+00 11210
1 TraesCS5D01G069500 chr5D 89.474 418 42 2 1 417 52237412 52236996 1.500000e-145 527
2 TraesCS5D01G069500 chr5D 89.294 411 41 3 2 409 435657457 435657867 4.200000e-141 512
3 TraesCS5D01G069500 chr5D 75.836 269 62 2 4011 4279 457782189 457781924 3.820000e-27 134
4 TraesCS5D01G069500 chr5B 96.996 4993 112 19 416 5384 64252812 64257790 0.000000e+00 8355
5 TraesCS5D01G069500 chr5B 90.998 511 24 6 5567 6056 64257782 64258291 0.000000e+00 669
6 TraesCS5D01G069500 chr5B 76.448 259 58 2 4021 4279 559997319 559997064 2.950000e-28 137
7 TraesCS5D01G069500 chr5B 89.873 79 7 1 1968 2046 64254294 64254371 3.870000e-17 100
8 TraesCS5D01G069500 chr5A 90.431 2550 186 38 2872 5384 57364744 57367272 0.000000e+00 3304
9 TraesCS5D01G069500 chr5A 93.095 1651 77 19 416 2046 57362041 57363674 0.000000e+00 2383
10 TraesCS5D01G069500 chr5A 91.541 532 17 8 5567 6070 57367264 57367795 0.000000e+00 708
11 TraesCS5D01G069500 chr5A 89.781 548 44 4 2466 3001 57364196 57364743 0.000000e+00 691
12 TraesCS5D01G069500 chr5A 85.502 607 49 18 1892 2470 57363559 57364154 1.130000e-166 597
13 TraesCS5D01G069500 chr5A 97.340 188 3 1 5382 5567 244431533 244431720 9.820000e-83 318
14 TraesCS5D01G069500 chr5A 95.025 201 5 4 5376 5573 570366913 570367111 1.640000e-80 311
15 TraesCS5D01G069500 chr4D 96.555 1132 29 4 1927 3052 55363191 55364318 0.000000e+00 1866
16 TraesCS5D01G069500 chr3A 89.563 412 39 4 1 409 35048724 35049134 2.510000e-143 520
17 TraesCS5D01G069500 chr3A 95.098 204 7 2 5375 5576 716806520 716806722 9.820000e-83 318
18 TraesCS5D01G069500 chr6D 89.125 423 32 3 1 409 386907512 386907090 1.170000e-141 514
19 TraesCS5D01G069500 chr1D 88.509 409 44 3 1 408 454806743 454807149 5.470000e-135 492
20 TraesCS5D01G069500 chr3D 86.988 415 51 3 1 414 330071513 330071101 1.190000e-126 464
21 TraesCS5D01G069500 chr2D 86.957 414 52 2 1 413 650493063 650492651 1.190000e-126 464
22 TraesCS5D01G069500 chr7D 86.603 418 51 5 1 416 33008125 33008539 1.990000e-124 457
23 TraesCS5D01G069500 chr1B 86.538 416 54 2 1 415 644578442 644578856 1.990000e-124 457
24 TraesCS5D01G069500 chr3B 85.211 426 48 4 3 414 161794142 161794566 2.020000e-114 424
25 TraesCS5D01G069500 chr7A 96.465 198 6 1 5374 5570 162776309 162776112 5.870000e-85 326
26 TraesCS5D01G069500 chr2A 97.297 185 3 1 5385 5567 63805892 63805708 4.570000e-81 313
27 TraesCS5D01G069500 chr2A 95.025 201 6 3 5373 5571 195350129 195349931 4.570000e-81 313
28 TraesCS5D01G069500 chr2A 96.354 192 4 2 5384 5572 196518149 196517958 4.570000e-81 313
29 TraesCS5D01G069500 chr2A 93.000 200 12 2 5373 5571 757322580 757322382 2.140000e-74 291
30 TraesCS5D01G069500 chr1A 92.381 210 15 1 5372 5581 495129176 495128968 1.280000e-76 298


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G069500 chr5D 66764521 66770590 6069 True 11210.000000 11210 100.000000 1 6070 1 chr5D.!!$R2 6069
1 TraesCS5D01G069500 chr5B 64252812 64258291 5479 False 3041.333333 8355 92.622333 416 6056 3 chr5B.!!$F1 5640
2 TraesCS5D01G069500 chr5A 57362041 57367795 5754 False 1536.600000 3304 90.070000 416 6070 5 chr5A.!!$F3 5654
3 TraesCS5D01G069500 chr4D 55363191 55364318 1127 False 1866.000000 1866 96.555000 1927 3052 1 chr4D.!!$F1 1125

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
42 43 0.037975 GACGGCCAAAACTCCTACGA 60.038 55.0 2.24 0.0 0.00 3.43 F
374 375 0.040157 GTTTTACCCCAAACGGACGC 60.040 55.0 0.00 0.0 0.00 5.19 F
414 415 0.438830 CGCGCTGAAGTTGGTCTAAC 59.561 55.0 5.56 0.0 39.65 2.34 F
918 938 0.542938 CTCACCTCTCCACACTCCCA 60.543 60.0 0.00 0.0 0.00 4.37 F
1791 1820 1.319614 TGTGTGATCCGATCTGGCGA 61.320 55.0 9.78 0.0 37.80 5.54 F
2140 2215 2.489722 TGATCTGTGACTGAGAGTTCGG 59.510 50.0 0.00 0.0 35.72 4.30 F
4101 4408 0.819582 AGCTTATGTGCCAATGTGCC 59.180 50.0 0.00 0.0 0.00 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1687 1716 0.318445 CAAGAACGTTCGGTCCGTCT 60.318 55.000 21.87 3.14 37.61 4.18 R
2104 2179 0.321653 GATCAAGTCAGGCACCGGTT 60.322 55.000 2.97 0.00 0.00 4.44 R
2246 2338 2.034558 GCACAAAAACTGAGCTAGGCAA 59.965 45.455 0.00 0.00 38.48 4.52 R
2863 3015 5.399933 ACTGAACAGTTTGCTAGTGCACAA 61.400 41.667 21.04 0.77 40.78 3.33 R
3129 3423 3.118038 AGAAAACCAAGACCACTACAGCA 60.118 43.478 0.00 0.00 0.00 4.41 R
4137 4444 3.282885 GAGCAAAACCTAATCCCTCCAG 58.717 50.000 0.00 0.00 0.00 3.86 R
5546 5872 0.107654 GGGTGTGTCTAGGGCACATC 60.108 60.000 18.92 18.25 46.66 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.347411 CGACGACCAAATCTCCTCC 57.653 57.895 0.00 0.00 0.00 4.30
19 20 0.530744 CGACGACCAAATCTCCTCCA 59.469 55.000 0.00 0.00 0.00 3.86
20 21 1.067142 CGACGACCAAATCTCCTCCAA 60.067 52.381 0.00 0.00 0.00 3.53
21 22 2.622436 GACGACCAAATCTCCTCCAAG 58.378 52.381 0.00 0.00 0.00 3.61
22 23 1.339151 ACGACCAAATCTCCTCCAAGC 60.339 52.381 0.00 0.00 0.00 4.01
23 24 1.373570 GACCAAATCTCCTCCAAGCG 58.626 55.000 0.00 0.00 0.00 4.68
24 25 0.984230 ACCAAATCTCCTCCAAGCGA 59.016 50.000 0.00 0.00 0.00 4.93
25 26 1.339151 ACCAAATCTCCTCCAAGCGAC 60.339 52.381 0.00 0.00 0.00 5.19
26 27 1.002366 CAAATCTCCTCCAAGCGACG 58.998 55.000 0.00 0.00 0.00 5.12
27 28 0.108138 AAATCTCCTCCAAGCGACGG 60.108 55.000 0.00 0.00 0.00 4.79
28 29 2.579684 AATCTCCTCCAAGCGACGGC 62.580 60.000 0.00 0.00 40.37 5.68
29 30 4.821589 CTCCTCCAAGCGACGGCC 62.822 72.222 0.00 0.00 41.24 6.13
31 32 4.697756 CCTCCAAGCGACGGCCAA 62.698 66.667 2.24 0.00 41.24 4.52
32 33 2.668212 CTCCAAGCGACGGCCAAA 60.668 61.111 2.24 0.00 41.24 3.28
33 34 2.203224 TCCAAGCGACGGCCAAAA 60.203 55.556 2.24 0.00 41.24 2.44
34 35 2.050442 CCAAGCGACGGCCAAAAC 60.050 61.111 2.24 0.00 41.24 2.43
35 36 2.551912 CCAAGCGACGGCCAAAACT 61.552 57.895 2.24 0.00 41.24 2.66
36 37 1.082104 CAAGCGACGGCCAAAACTC 60.082 57.895 2.24 0.00 41.24 3.01
37 38 2.258726 AAGCGACGGCCAAAACTCC 61.259 57.895 2.24 0.00 41.24 3.85
38 39 2.668550 GCGACGGCCAAAACTCCT 60.669 61.111 2.24 0.00 0.00 3.69
39 40 1.375013 GCGACGGCCAAAACTCCTA 60.375 57.895 2.24 0.00 0.00 2.94
40 41 1.632948 GCGACGGCCAAAACTCCTAC 61.633 60.000 2.24 0.00 0.00 3.18
41 42 1.349259 CGACGGCCAAAACTCCTACG 61.349 60.000 2.24 0.00 0.00 3.51
42 43 0.037975 GACGGCCAAAACTCCTACGA 60.038 55.000 2.24 0.00 0.00 3.43
43 44 0.393820 ACGGCCAAAACTCCTACGAA 59.606 50.000 2.24 0.00 0.00 3.85
44 45 1.202675 ACGGCCAAAACTCCTACGAAA 60.203 47.619 2.24 0.00 0.00 3.46
45 46 1.463444 CGGCCAAAACTCCTACGAAAG 59.537 52.381 2.24 0.00 0.00 2.62
46 47 1.199327 GGCCAAAACTCCTACGAAAGC 59.801 52.381 0.00 0.00 0.00 3.51
47 48 1.136057 GCCAAAACTCCTACGAAAGCG 60.136 52.381 0.00 0.00 44.79 4.68
48 49 1.136057 CCAAAACTCCTACGAAAGCGC 60.136 52.381 0.00 0.00 42.48 5.92
49 50 0.788391 AAAACTCCTACGAAAGCGCG 59.212 50.000 0.00 0.00 42.48 6.86
50 51 1.012486 AAACTCCTACGAAAGCGCGG 61.012 55.000 8.83 0.00 42.48 6.46
51 52 2.582498 CTCCTACGAAAGCGCGGG 60.582 66.667 8.83 0.00 42.48 6.13
52 53 4.807039 TCCTACGAAAGCGCGGGC 62.807 66.667 17.92 17.92 42.48 6.13
73 74 4.451150 GTGGCGGCCATGTCGAGA 62.451 66.667 26.68 0.00 35.28 4.04
74 75 4.451150 TGGCGGCCATGTCGAGAC 62.451 66.667 19.77 0.00 29.41 3.36
76 77 4.796231 GCGGCCATGTCGAGACGT 62.796 66.667 2.24 0.00 29.41 4.34
77 78 2.880879 CGGCCATGTCGAGACGTG 60.881 66.667 16.25 16.25 45.43 4.49
84 85 2.743636 ATGTCGAGACGTGATTTGGT 57.256 45.000 0.00 0.00 0.00 3.67
85 86 3.861276 ATGTCGAGACGTGATTTGGTA 57.139 42.857 0.00 0.00 0.00 3.25
86 87 3.861276 TGTCGAGACGTGATTTGGTAT 57.139 42.857 0.00 0.00 0.00 2.73
87 88 3.507786 TGTCGAGACGTGATTTGGTATG 58.492 45.455 0.00 0.00 0.00 2.39
88 89 2.858344 GTCGAGACGTGATTTGGTATGG 59.142 50.000 0.00 0.00 0.00 2.74
89 90 2.756207 TCGAGACGTGATTTGGTATGGA 59.244 45.455 0.00 0.00 0.00 3.41
90 91 2.858344 CGAGACGTGATTTGGTATGGAC 59.142 50.000 0.00 0.00 0.00 4.02
91 92 2.858344 GAGACGTGATTTGGTATGGACG 59.142 50.000 0.00 0.00 0.00 4.79
92 93 1.931172 GACGTGATTTGGTATGGACGG 59.069 52.381 0.00 0.00 0.00 4.79
93 94 0.655733 CGTGATTTGGTATGGACGGC 59.344 55.000 0.00 0.00 0.00 5.68
94 95 1.021968 GTGATTTGGTATGGACGGCC 58.978 55.000 0.00 0.00 0.00 6.13
95 96 0.462937 TGATTTGGTATGGACGGCCG 60.463 55.000 26.86 26.86 36.79 6.13
96 97 1.153046 ATTTGGTATGGACGGCCGG 60.153 57.895 31.76 11.88 36.79 6.13
97 98 2.618368 ATTTGGTATGGACGGCCGGG 62.618 60.000 31.76 2.28 36.79 5.73
98 99 4.781616 TGGTATGGACGGCCGGGA 62.782 66.667 31.76 13.19 36.79 5.14
99 100 3.925090 GGTATGGACGGCCGGGAG 61.925 72.222 31.76 0.90 36.79 4.30
100 101 2.836360 GTATGGACGGCCGGGAGA 60.836 66.667 31.76 10.71 36.79 3.71
101 102 2.200370 TATGGACGGCCGGGAGAT 59.800 61.111 31.76 17.33 36.79 2.75
102 103 2.207229 TATGGACGGCCGGGAGATG 61.207 63.158 31.76 0.00 36.79 2.90
103 104 2.650226 TATGGACGGCCGGGAGATGA 62.650 60.000 31.76 5.12 36.79 2.92
104 105 3.917760 GGACGGCCGGGAGATGAG 61.918 72.222 31.76 0.00 0.00 2.90
105 106 4.593864 GACGGCCGGGAGATGAGC 62.594 72.222 31.76 2.83 0.00 4.26
107 108 4.598894 CGGCCGGGAGATGAGCAG 62.599 72.222 20.10 0.00 0.00 4.24
108 109 3.474570 GGCCGGGAGATGAGCAGT 61.475 66.667 2.18 0.00 0.00 4.40
109 110 2.202987 GCCGGGAGATGAGCAGTG 60.203 66.667 2.18 0.00 0.00 3.66
110 111 2.725312 GCCGGGAGATGAGCAGTGA 61.725 63.158 2.18 0.00 0.00 3.41
111 112 1.440893 CCGGGAGATGAGCAGTGAG 59.559 63.158 0.00 0.00 0.00 3.51
112 113 1.440893 CGGGAGATGAGCAGTGAGG 59.559 63.158 0.00 0.00 0.00 3.86
113 114 1.039785 CGGGAGATGAGCAGTGAGGA 61.040 60.000 0.00 0.00 0.00 3.71
114 115 0.752054 GGGAGATGAGCAGTGAGGAG 59.248 60.000 0.00 0.00 0.00 3.69
115 116 0.752054 GGAGATGAGCAGTGAGGAGG 59.248 60.000 0.00 0.00 0.00 4.30
116 117 0.104671 GAGATGAGCAGTGAGGAGGC 59.895 60.000 0.00 0.00 0.00 4.70
117 118 1.227205 GATGAGCAGTGAGGAGGCG 60.227 63.158 0.00 0.00 0.00 5.52
118 119 2.641439 GATGAGCAGTGAGGAGGCGG 62.641 65.000 0.00 0.00 0.00 6.13
119 120 4.828925 GAGCAGTGAGGAGGCGGC 62.829 72.222 0.00 0.00 0.00 6.53
128 129 3.231736 GGAGGCGGCCGGAGAATA 61.232 66.667 29.38 0.00 0.00 1.75
129 130 2.340443 GAGGCGGCCGGAGAATAG 59.660 66.667 29.38 0.00 0.00 1.73
130 131 2.444140 AGGCGGCCGGAGAATAGT 60.444 61.111 29.38 0.00 0.00 2.12
131 132 2.280186 GGCGGCCGGAGAATAGTG 60.280 66.667 29.38 0.00 0.00 2.74
132 133 2.280186 GCGGCCGGAGAATAGTGG 60.280 66.667 29.38 0.00 0.00 4.00
133 134 2.280186 CGGCCGGAGAATAGTGGC 60.280 66.667 20.10 0.00 46.82 5.01
135 136 2.280186 GCCGGAGAATAGTGGCGG 60.280 66.667 5.05 0.00 37.81 6.13
136 137 2.280186 CCGGAGAATAGTGGCGGC 60.280 66.667 0.00 0.00 0.00 6.53
137 138 2.658593 CGGAGAATAGTGGCGGCG 60.659 66.667 0.51 0.51 0.00 6.46
138 139 2.967615 GGAGAATAGTGGCGGCGC 60.968 66.667 26.17 26.17 0.00 6.53
181 182 2.742372 CGGGTGGAGGCGTTGAAG 60.742 66.667 0.00 0.00 0.00 3.02
182 183 3.056328 GGGTGGAGGCGTTGAAGC 61.056 66.667 0.00 0.00 0.00 3.86
183 184 2.032681 GGTGGAGGCGTTGAAGCT 59.967 61.111 0.00 0.00 37.29 3.74
184 185 1.295423 GGTGGAGGCGTTGAAGCTA 59.705 57.895 0.00 0.00 37.29 3.32
185 186 0.321298 GGTGGAGGCGTTGAAGCTAA 60.321 55.000 0.00 0.00 37.29 3.09
186 187 1.679032 GGTGGAGGCGTTGAAGCTAAT 60.679 52.381 0.00 0.00 37.29 1.73
187 188 1.398390 GTGGAGGCGTTGAAGCTAATG 59.602 52.381 0.00 0.00 37.29 1.90
188 189 1.017387 GGAGGCGTTGAAGCTAATGG 58.983 55.000 0.00 0.00 37.29 3.16
189 190 1.406887 GGAGGCGTTGAAGCTAATGGA 60.407 52.381 0.00 0.00 37.29 3.41
190 191 1.666189 GAGGCGTTGAAGCTAATGGAC 59.334 52.381 0.00 0.00 37.29 4.02
191 192 1.279271 AGGCGTTGAAGCTAATGGACT 59.721 47.619 0.00 0.00 37.29 3.85
192 193 1.398390 GGCGTTGAAGCTAATGGACTG 59.602 52.381 0.00 0.00 37.29 3.51
193 194 2.076863 GCGTTGAAGCTAATGGACTGT 58.923 47.619 0.00 0.00 0.00 3.55
194 195 2.484264 GCGTTGAAGCTAATGGACTGTT 59.516 45.455 0.00 0.00 0.00 3.16
195 196 3.682858 GCGTTGAAGCTAATGGACTGTTA 59.317 43.478 0.00 0.00 0.00 2.41
196 197 4.201724 GCGTTGAAGCTAATGGACTGTTAG 60.202 45.833 0.00 0.00 33.36 2.34
197 198 4.929808 CGTTGAAGCTAATGGACTGTTAGT 59.070 41.667 0.00 0.00 32.90 2.24
198 199 5.163953 CGTTGAAGCTAATGGACTGTTAGTG 60.164 44.000 0.00 0.00 32.90 2.74
199 200 5.483685 TGAAGCTAATGGACTGTTAGTGT 57.516 39.130 0.00 0.00 32.90 3.55
200 201 5.479306 TGAAGCTAATGGACTGTTAGTGTC 58.521 41.667 0.00 0.00 32.90 3.67
206 207 2.745515 GGACTGTTAGTGTCCCTGAC 57.254 55.000 1.76 0.00 46.01 3.51
207 208 1.968493 GGACTGTTAGTGTCCCTGACA 59.032 52.381 1.76 0.00 46.01 3.58
210 211 0.685097 TGTTAGTGTCCCTGACAGGC 59.315 55.000 16.72 4.00 43.57 4.85
211 212 0.389948 GTTAGTGTCCCTGACAGGCG 60.390 60.000 16.72 9.62 43.57 5.52
212 213 1.541310 TTAGTGTCCCTGACAGGCGG 61.541 60.000 16.72 3.58 43.57 6.13
213 214 4.394712 GTGTCCCTGACAGGCGGG 62.395 72.222 16.72 3.75 43.57 6.13
262 263 2.809601 GTCCGCGCGATGTCTGTT 60.810 61.111 34.63 0.00 0.00 3.16
263 264 2.048597 TCCGCGCGATGTCTGTTT 60.049 55.556 34.63 0.00 0.00 2.83
264 265 2.096406 CCGCGCGATGTCTGTTTG 59.904 61.111 34.63 6.11 0.00 2.93
265 266 2.379634 CCGCGCGATGTCTGTTTGA 61.380 57.895 34.63 0.00 0.00 2.69
266 267 1.225475 CGCGCGATGTCTGTTTGAC 60.225 57.895 28.94 0.00 45.54 3.18
267 268 1.132640 GCGCGATGTCTGTTTGACC 59.867 57.895 12.10 0.00 44.75 4.02
268 269 1.787847 CGCGATGTCTGTTTGACCC 59.212 57.895 0.00 0.00 44.75 4.46
269 270 1.635663 CGCGATGTCTGTTTGACCCC 61.636 60.000 0.00 0.00 44.75 4.95
270 271 0.605319 GCGATGTCTGTTTGACCCCA 60.605 55.000 0.00 0.00 44.75 4.96
271 272 1.890876 CGATGTCTGTTTGACCCCAA 58.109 50.000 0.00 0.00 44.75 4.12
272 273 2.226330 CGATGTCTGTTTGACCCCAAA 58.774 47.619 0.00 0.00 44.75 3.28
278 279 4.167597 TTTGACCCCAAACTCGGC 57.832 55.556 0.00 0.00 37.36 5.54
279 280 1.894756 TTTGACCCCAAACTCGGCG 60.895 57.895 0.00 0.00 37.36 6.46
282 283 4.572571 ACCCCAAACTCGGCGCAA 62.573 61.111 10.83 0.00 0.00 4.85
283 284 3.737172 CCCCAAACTCGGCGCAAG 61.737 66.667 10.83 8.81 43.44 4.01
284 285 2.978010 CCCAAACTCGGCGCAAGT 60.978 61.111 10.83 9.58 41.68 3.16
285 286 2.551912 CCCAAACTCGGCGCAAGTT 61.552 57.895 18.46 18.46 38.59 2.66
286 287 1.358759 CCAAACTCGGCGCAAGTTT 59.641 52.632 25.63 25.63 45.41 2.66
288 289 1.358759 AAACTCGGCGCAAGTTTGG 59.641 52.632 28.61 8.31 43.46 3.28
289 290 2.070654 AAACTCGGCGCAAGTTTGGG 62.071 55.000 28.61 8.02 43.46 4.12
296 297 2.915137 GCAAGTTTGGGCCGGGAA 60.915 61.111 2.18 0.00 0.00 3.97
297 298 2.282783 GCAAGTTTGGGCCGGGAAT 61.283 57.895 2.18 0.00 0.00 3.01
298 299 1.591183 CAAGTTTGGGCCGGGAATG 59.409 57.895 2.18 0.00 0.00 2.67
299 300 0.897863 CAAGTTTGGGCCGGGAATGA 60.898 55.000 2.18 0.00 0.00 2.57
300 301 0.611896 AAGTTTGGGCCGGGAATGAG 60.612 55.000 2.18 0.00 0.00 2.90
301 302 1.304134 GTTTGGGCCGGGAATGAGT 60.304 57.895 2.18 0.00 0.00 3.41
302 303 1.001393 TTTGGGCCGGGAATGAGTC 60.001 57.895 2.18 0.00 0.00 3.36
303 304 2.813226 TTTGGGCCGGGAATGAGTCG 62.813 60.000 2.18 0.00 0.00 4.18
304 305 3.467226 GGGCCGGGAATGAGTCGA 61.467 66.667 2.18 0.00 0.00 4.20
305 306 2.582436 GGCCGGGAATGAGTCGAA 59.418 61.111 2.18 0.00 0.00 3.71
306 307 1.078708 GGCCGGGAATGAGTCGAAA 60.079 57.895 2.18 0.00 0.00 3.46
307 308 0.675522 GGCCGGGAATGAGTCGAAAA 60.676 55.000 2.18 0.00 0.00 2.29
308 309 0.446616 GCCGGGAATGAGTCGAAAAC 59.553 55.000 2.18 0.00 0.00 2.43
309 310 0.719465 CCGGGAATGAGTCGAAAACG 59.281 55.000 0.00 0.00 0.00 3.60
310 311 0.719465 CGGGAATGAGTCGAAAACGG 59.281 55.000 0.00 0.00 0.00 4.44
311 312 1.670674 CGGGAATGAGTCGAAAACGGA 60.671 52.381 0.00 0.00 0.00 4.69
312 313 1.730612 GGGAATGAGTCGAAAACGGAC 59.269 52.381 0.00 0.00 34.62 4.79
313 314 1.389106 GGAATGAGTCGAAAACGGACG 59.611 52.381 0.00 0.00 39.38 4.79
314 315 2.322161 GAATGAGTCGAAAACGGACGA 58.678 47.619 0.00 0.00 39.38 4.20
315 316 2.427232 ATGAGTCGAAAACGGACGAA 57.573 45.000 0.00 0.00 40.12 3.85
316 317 2.206815 TGAGTCGAAAACGGACGAAA 57.793 45.000 0.00 0.00 40.12 3.46
317 318 2.746269 TGAGTCGAAAACGGACGAAAT 58.254 42.857 0.00 0.00 40.12 2.17
318 319 2.727798 TGAGTCGAAAACGGACGAAATC 59.272 45.455 0.00 0.00 40.12 2.17
319 320 2.064014 AGTCGAAAACGGACGAAATCC 58.936 47.619 0.00 0.00 45.20 3.01
328 329 1.784525 GGACGAAATCCGGATAGCTG 58.215 55.000 19.48 10.67 43.93 4.24
329 330 1.068741 GGACGAAATCCGGATAGCTGT 59.931 52.381 19.48 13.95 43.93 4.40
330 331 2.395654 GACGAAATCCGGATAGCTGTC 58.604 52.381 19.48 18.35 43.93 3.51
331 332 1.068741 ACGAAATCCGGATAGCTGTCC 59.931 52.381 19.48 19.11 43.93 4.02
332 333 1.068588 CGAAATCCGGATAGCTGTCCA 59.931 52.381 26.94 10.89 38.21 4.02
333 334 2.289072 CGAAATCCGGATAGCTGTCCAT 60.289 50.000 26.94 12.69 38.21 3.41
334 335 3.744660 GAAATCCGGATAGCTGTCCATT 58.255 45.455 26.94 17.44 38.21 3.16
335 336 3.864789 AATCCGGATAGCTGTCCATTT 57.135 42.857 26.94 14.69 38.21 2.32
336 337 2.620251 TCCGGATAGCTGTCCATTTG 57.380 50.000 26.94 11.95 38.21 2.32
337 338 1.140852 TCCGGATAGCTGTCCATTTGG 59.859 52.381 26.94 19.63 38.21 3.28
338 339 1.597742 CGGATAGCTGTCCATTTGGG 58.402 55.000 26.94 7.76 38.21 4.12
339 340 1.815408 CGGATAGCTGTCCATTTGGGG 60.815 57.143 26.94 7.07 38.21 4.96
340 341 1.322442 GATAGCTGTCCATTTGGGGC 58.678 55.000 0.00 0.08 43.63 5.80
341 342 0.106015 ATAGCTGTCCATTTGGGGCC 60.106 55.000 0.00 0.00 42.20 5.80
342 343 1.505151 TAGCTGTCCATTTGGGGCCA 61.505 55.000 4.39 0.00 42.20 5.36
343 344 2.649129 GCTGTCCATTTGGGGCCAC 61.649 63.158 4.39 0.00 42.20 5.01
344 345 2.282816 TGTCCATTTGGGGCCACG 60.283 61.111 4.39 0.00 42.20 4.94
345 346 3.758931 GTCCATTTGGGGCCACGC 61.759 66.667 4.39 0.00 34.11 5.34
346 347 3.978193 TCCATTTGGGGCCACGCT 61.978 61.111 4.39 0.00 37.22 5.07
347 348 2.044451 CCATTTGGGGCCACGCTA 60.044 61.111 4.39 0.00 0.00 4.26
348 349 1.455587 CCATTTGGGGCCACGCTAT 60.456 57.895 4.39 0.00 0.00 2.97
349 350 1.042559 CCATTTGGGGCCACGCTATT 61.043 55.000 4.39 0.00 0.00 1.73
350 351 0.385390 CATTTGGGGCCACGCTATTC 59.615 55.000 4.39 0.00 0.00 1.75
351 352 1.101049 ATTTGGGGCCACGCTATTCG 61.101 55.000 4.39 0.00 45.38 3.34
362 363 2.984879 CGCTATTCGTCCGTTTTACC 57.015 50.000 0.00 0.00 0.00 2.85
363 364 1.589779 CGCTATTCGTCCGTTTTACCC 59.410 52.381 0.00 0.00 0.00 3.69
364 365 1.935873 GCTATTCGTCCGTTTTACCCC 59.064 52.381 0.00 0.00 0.00 4.95
365 366 2.677613 GCTATTCGTCCGTTTTACCCCA 60.678 50.000 0.00 0.00 0.00 4.96
366 367 2.565046 ATTCGTCCGTTTTACCCCAA 57.435 45.000 0.00 0.00 0.00 4.12
367 368 2.338577 TTCGTCCGTTTTACCCCAAA 57.661 45.000 0.00 0.00 0.00 3.28
368 369 1.592064 TCGTCCGTTTTACCCCAAAC 58.408 50.000 0.00 0.00 33.90 2.93
374 375 0.040157 GTTTTACCCCAAACGGACGC 60.040 55.000 0.00 0.00 0.00 5.19
375 376 0.465097 TTTTACCCCAAACGGACGCA 60.465 50.000 0.00 0.00 0.00 5.24
376 377 1.165284 TTTACCCCAAACGGACGCAC 61.165 55.000 0.00 0.00 0.00 5.34
377 378 3.534054 TACCCCAAACGGACGCACC 62.534 63.158 0.00 0.00 0.00 5.01
387 388 3.771160 GACGCACCCGGACAGGAT 61.771 66.667 0.73 0.00 45.00 3.24
388 389 4.082523 ACGCACCCGGACAGGATG 62.083 66.667 0.73 0.00 45.00 3.51
389 390 4.838152 CGCACCCGGACAGGATGG 62.838 72.222 0.73 0.00 45.00 3.51
393 394 3.480133 CCCGGACAGGATGGGGTC 61.480 72.222 0.73 0.00 45.00 4.46
394 395 3.849951 CCGGACAGGATGGGGTCG 61.850 72.222 0.00 0.00 45.00 4.79
395 396 4.530857 CGGACAGGATGGGGTCGC 62.531 72.222 0.00 0.00 43.62 5.19
396 397 4.530857 GGACAGGATGGGGTCGCG 62.531 72.222 0.00 0.00 43.62 5.87
407 408 4.430423 GGTCGCGCGCTGAAGTTG 62.430 66.667 30.48 11.83 0.00 3.16
408 409 4.430423 GTCGCGCGCTGAAGTTGG 62.430 66.667 30.48 11.00 0.00 3.77
409 410 4.961511 TCGCGCGCTGAAGTTGGT 62.962 61.111 30.48 0.00 0.00 3.67
410 411 4.430423 CGCGCGCTGAAGTTGGTC 62.430 66.667 30.48 0.00 0.00 4.02
411 412 3.044305 GCGCGCTGAAGTTGGTCT 61.044 61.111 26.67 0.00 0.00 3.85
412 413 1.736645 GCGCGCTGAAGTTGGTCTA 60.737 57.895 26.67 0.00 0.00 2.59
413 414 1.289109 GCGCGCTGAAGTTGGTCTAA 61.289 55.000 26.67 0.00 0.00 2.10
414 415 0.438830 CGCGCTGAAGTTGGTCTAAC 59.561 55.000 5.56 0.00 39.65 2.34
448 449 5.344743 TGGTTTCAGCAACAAAATTACCA 57.655 34.783 0.00 0.00 37.07 3.25
497 504 5.304686 ACTGCGAAATCTCCCCATAAATA 57.695 39.130 0.00 0.00 0.00 1.40
535 542 4.028648 CGTTTTCGTGAAATTGCGTAATCC 59.971 41.667 0.00 0.00 38.65 3.01
551 558 4.913345 CGTAATCCGCACTCATAAATACGA 59.087 41.667 0.00 0.00 36.62 3.43
574 581 7.154656 CGAAAGATATTCATCACCCAGTATCA 58.845 38.462 0.00 0.00 33.21 2.15
707 714 4.041917 GGCCCGCACACACACATG 62.042 66.667 0.00 0.00 0.00 3.21
708 715 4.705519 GCCCGCACACACACATGC 62.706 66.667 0.00 0.00 38.52 4.06
709 716 3.285982 CCCGCACACACACATGCA 61.286 61.111 0.00 0.00 42.17 3.96
710 717 2.253154 CCGCACACACACATGCAG 59.747 61.111 0.00 0.00 42.17 4.41
711 718 2.427905 CGCACACACACATGCAGC 60.428 61.111 0.00 0.00 42.17 5.25
902 922 1.893315 CCCCACCCTCTATTTCCTCA 58.107 55.000 0.00 0.00 0.00 3.86
918 938 0.542938 CTCACCTCTCCACACTCCCA 60.543 60.000 0.00 0.00 0.00 4.37
1622 1651 6.918892 AAGGTTAGGAAAATGCACAAAAAC 57.081 33.333 0.00 0.00 0.00 2.43
1687 1716 5.174037 ACTAATCTTGGTCGAAATGGGAA 57.826 39.130 0.00 0.00 0.00 3.97
1720 1749 5.705609 ACGTTCTTGCTTAATTCACCATT 57.294 34.783 0.00 0.00 0.00 3.16
1730 1759 3.764885 AATTCACCATTGCTTAGACGC 57.235 42.857 0.00 0.00 0.00 5.19
1755 1784 1.887707 GGATGAACACGCCCGATCC 60.888 63.158 0.00 0.00 0.00 3.36
1791 1820 1.319614 TGTGTGATCCGATCTGGCGA 61.320 55.000 9.78 0.00 37.80 5.54
1852 1885 4.022242 CCCGATCGGAATCTATACACAAGT 60.022 45.833 35.42 0.00 37.50 3.16
1946 1980 4.099881 TGCTTTTCAGAAATGGACTTGCTT 59.900 37.500 10.08 0.00 0.00 3.91
2104 2179 5.014858 GTGAGGTCGTTATATGGATCCCTA 58.985 45.833 9.90 3.89 0.00 3.53
2140 2215 2.489722 TGATCTGTGACTGAGAGTTCGG 59.510 50.000 0.00 0.00 35.72 4.30
2246 2338 6.295575 GGGCACAAGTCTCTTATAGATATGCT 60.296 42.308 0.00 0.00 36.36 3.79
2590 2740 6.258507 CCAAAAAGTTCCATTCAGTTTCTTGG 59.741 38.462 0.00 0.00 0.00 3.61
2770 2920 5.500234 TGAACCTCATCCCTAAATCACAAG 58.500 41.667 0.00 0.00 0.00 3.16
2840 2992 6.691754 TGCTTTCTAATGTTGTCTTTGACA 57.308 33.333 0.00 0.00 41.09 3.58
3129 3423 9.084533 AGTCTCTCACAGTTCTTAAAGTAGATT 57.915 33.333 0.00 0.00 0.00 2.40
3520 3814 6.506147 TGCTATTGTTCATATGGATTGTTGC 58.494 36.000 2.13 2.05 0.00 4.17
3541 3835 5.232463 TGCTCAAATTTCAGAAATTGAGCC 58.768 37.500 35.10 27.09 46.69 4.70
3888 4195 2.480416 CCTAACTAGACTGCTCCTTGCG 60.480 54.545 0.00 0.00 46.63 4.85
4101 4408 0.819582 AGCTTATGTGCCAATGTGCC 59.180 50.000 0.00 0.00 0.00 5.01
4137 4444 4.747108 CCGATCATACTTTGGTGATCTCAC 59.253 45.833 12.01 1.59 45.34 3.51
4377 4685 3.023832 ACAGGCCCTATGTGTAAATTGC 58.976 45.455 0.00 0.00 0.00 3.56
4495 4803 2.376808 AGATGCTTCTTCAGTGTCCG 57.623 50.000 0.00 0.00 0.00 4.79
4517 4825 6.314400 TCCGAACTTATAAATGGTTAGTGCAC 59.686 38.462 9.40 9.40 0.00 4.57
4522 4830 6.312918 ACTTATAAATGGTTAGTGCACGAGTG 59.687 38.462 12.01 0.00 0.00 3.51
4603 4911 1.073603 TGTTCATGTCACTGGATGCCA 59.926 47.619 0.00 0.00 0.00 4.92
4658 4966 2.903784 ACTGCCAATTTTTAACCTCCCC 59.096 45.455 0.00 0.00 0.00 4.81
4660 4968 3.169908 TGCCAATTTTTAACCTCCCCTC 58.830 45.455 0.00 0.00 0.00 4.30
4757 5067 5.244626 AGCATTGCCATAATCTTATGTTCCC 59.755 40.000 4.70 0.00 39.04 3.97
4969 5289 2.951726 TCATCGCTTCTCTGTTGACAG 58.048 47.619 4.77 4.77 45.08 3.51
5181 5504 1.098050 GATGTTGTAAGGCTGGCTGG 58.902 55.000 3.84 0.00 0.00 4.85
5214 5537 2.826128 CTGAGCCTACTGGTGTTGTAGA 59.174 50.000 0.00 0.00 39.61 2.59
5216 5539 3.006537 TGAGCCTACTGGTGTTGTAGAAC 59.993 47.826 0.00 0.00 39.61 3.01
5217 5540 3.240302 AGCCTACTGGTGTTGTAGAACT 58.760 45.455 4.21 0.00 39.61 3.01
5220 5543 4.461781 GCCTACTGGTGTTGTAGAACTCTA 59.538 45.833 4.21 0.00 39.61 2.43
5221 5544 5.621781 GCCTACTGGTGTTGTAGAACTCTAC 60.622 48.000 9.53 9.53 41.23 2.59
5222 5545 5.711036 CCTACTGGTGTTGTAGAACTCTACT 59.289 44.000 15.96 0.00 46.74 2.57
5223 5546 5.455056 ACTGGTGTTGTAGAACTCTACTG 57.545 43.478 15.96 0.00 46.74 2.74
5224 5547 4.894114 ACTGGTGTTGTAGAACTCTACTGT 59.106 41.667 15.96 0.26 46.74 3.55
5330 5656 1.598701 GCACCCTTGGTTCATCCTGC 61.599 60.000 0.00 0.00 31.02 4.85
5331 5657 1.002134 ACCCTTGGTTCATCCTGCG 60.002 57.895 0.00 0.00 37.07 5.18
5341 5667 4.335315 TGGTTCATCCTGCGAAATAATGAC 59.665 41.667 0.00 0.00 37.07 3.06
5387 5713 9.693739 TTGGTGTGTCCATATATAATTTTCAGT 57.306 29.630 0.00 0.00 46.60 3.41
5388 5714 9.693739 TGGTGTGTCCATATATAATTTTCAGTT 57.306 29.630 0.00 0.00 41.93 3.16
5424 5750 7.069852 CATCTAGATGTGCCATAAGTATTGC 57.930 40.000 22.42 0.00 34.23 3.56
5425 5751 6.173427 TCTAGATGTGCCATAAGTATTGCA 57.827 37.500 0.00 0.00 32.69 4.08
5433 5759 6.866010 TGCCATAAGTATTGCACATCTAAG 57.134 37.500 0.00 0.00 30.49 2.18
5434 5760 6.356556 TGCCATAAGTATTGCACATCTAAGT 58.643 36.000 0.00 0.00 30.49 2.24
5435 5761 6.483307 TGCCATAAGTATTGCACATCTAAGTC 59.517 38.462 0.00 0.00 30.49 3.01
5436 5762 6.483307 GCCATAAGTATTGCACATCTAAGTCA 59.517 38.462 0.00 0.00 0.00 3.41
5437 5763 7.173907 GCCATAAGTATTGCACATCTAAGTCAT 59.826 37.037 0.00 0.00 0.00 3.06
5438 5764 9.710900 CCATAAGTATTGCACATCTAAGTCATA 57.289 33.333 0.00 0.00 0.00 2.15
5442 5768 8.824159 AGTATTGCACATCTAAGTCATATGTC 57.176 34.615 1.90 0.00 31.60 3.06
5443 5769 8.424133 AGTATTGCACATCTAAGTCATATGTCA 58.576 33.333 1.90 0.00 31.60 3.58
5444 5770 9.212641 GTATTGCACATCTAAGTCATATGTCAT 57.787 33.333 1.90 0.00 31.60 3.06
5445 5771 8.687292 ATTGCACATCTAAGTCATATGTCATT 57.313 30.769 1.90 0.00 31.60 2.57
5446 5772 7.486802 TGCACATCTAAGTCATATGTCATTG 57.513 36.000 1.90 0.00 31.60 2.82
5447 5773 7.274447 TGCACATCTAAGTCATATGTCATTGA 58.726 34.615 1.90 0.00 31.60 2.57
5448 5774 7.935210 TGCACATCTAAGTCATATGTCATTGAT 59.065 33.333 1.90 0.00 31.60 2.57
5449 5775 8.441608 GCACATCTAAGTCATATGTCATTGATC 58.558 37.037 1.90 0.00 31.60 2.92
5450 5776 9.708092 CACATCTAAGTCATATGTCATTGATCT 57.292 33.333 1.90 0.00 31.60 2.75
5464 5790 8.134905 TGTCATTGATCTTACATTGAGATTCG 57.865 34.615 0.00 0.00 34.13 3.34
5465 5791 7.765819 TGTCATTGATCTTACATTGAGATTCGT 59.234 33.333 0.00 0.00 34.13 3.85
5466 5792 8.060679 GTCATTGATCTTACATTGAGATTCGTG 58.939 37.037 0.00 0.00 34.13 4.35
5467 5793 7.765819 TCATTGATCTTACATTGAGATTCGTGT 59.234 33.333 0.00 0.00 34.13 4.49
5468 5794 6.892310 TGATCTTACATTGAGATTCGTGTG 57.108 37.500 0.00 0.00 34.13 3.82
5469 5795 6.630071 TGATCTTACATTGAGATTCGTGTGA 58.370 36.000 0.00 0.00 34.13 3.58
5470 5796 7.096551 TGATCTTACATTGAGATTCGTGTGAA 58.903 34.615 0.00 0.00 38.76 3.18
5472 5798 9.249457 GATCTTACATTGAGATTCGTGTGAATA 57.751 33.333 0.00 0.00 44.79 1.75
5473 5799 9.770097 ATCTTACATTGAGATTCGTGTGAATAT 57.230 29.630 0.00 0.00 44.79 1.28
5474 5800 9.599866 TCTTACATTGAGATTCGTGTGAATATT 57.400 29.630 0.00 0.00 44.79 1.28
5478 5804 8.950210 ACATTGAGATTCGTGTGAATATTTTCT 58.050 29.630 0.00 0.00 44.79 2.52
5479 5805 9.430838 CATTGAGATTCGTGTGAATATTTTCTC 57.569 33.333 0.00 0.00 44.79 2.87
5480 5806 8.777865 TTGAGATTCGTGTGAATATTTTCTCT 57.222 30.769 0.00 0.00 44.79 3.10
5481 5807 8.412608 TGAGATTCGTGTGAATATTTTCTCTC 57.587 34.615 0.00 1.17 44.79 3.20
5482 5808 8.253810 TGAGATTCGTGTGAATATTTTCTCTCT 58.746 33.333 9.08 1.15 44.79 3.10
5483 5809 9.092876 GAGATTCGTGTGAATATTTTCTCTCTT 57.907 33.333 0.00 0.00 44.79 2.85
5484 5810 9.442047 AGATTCGTGTGAATATTTTCTCTCTTT 57.558 29.630 0.00 0.00 44.79 2.52
5513 5839 9.396022 TCTTTTTCTCTTTGTACTTGATTCACT 57.604 29.630 0.00 0.00 0.00 3.41
5514 5840 9.657121 CTTTTTCTCTTTGTACTTGATTCACTC 57.343 33.333 0.00 0.00 0.00 3.51
5515 5841 8.731275 TTTTCTCTTTGTACTTGATTCACTCA 57.269 30.769 0.00 0.00 0.00 3.41
5516 5842 7.715265 TTCTCTTTGTACTTGATTCACTCAC 57.285 36.000 0.00 0.00 32.17 3.51
5517 5843 7.055667 TCTCTTTGTACTTGATTCACTCACT 57.944 36.000 0.00 0.00 32.17 3.41
5518 5844 7.500992 TCTCTTTGTACTTGATTCACTCACTT 58.499 34.615 0.00 0.00 32.17 3.16
5519 5845 8.638873 TCTCTTTGTACTTGATTCACTCACTTA 58.361 33.333 0.00 0.00 32.17 2.24
5520 5846 8.818141 TCTTTGTACTTGATTCACTCACTTAG 57.182 34.615 0.00 0.00 32.17 2.18
5521 5847 8.638873 TCTTTGTACTTGATTCACTCACTTAGA 58.361 33.333 0.00 0.00 32.17 2.10
5522 5848 9.429359 CTTTGTACTTGATTCACTCACTTAGAT 57.571 33.333 0.00 0.00 32.17 1.98
5523 5849 8.763049 TTGTACTTGATTCACTCACTTAGATG 57.237 34.615 0.00 0.00 32.17 2.90
5524 5850 7.896811 TGTACTTGATTCACTCACTTAGATGT 58.103 34.615 0.00 0.00 32.17 3.06
5525 5851 7.814587 TGTACTTGATTCACTCACTTAGATGTG 59.185 37.037 0.00 0.00 39.15 3.21
5526 5852 5.641209 ACTTGATTCACTCACTTAGATGTGC 59.359 40.000 0.00 0.00 37.81 4.57
5527 5853 5.151297 TGATTCACTCACTTAGATGTGCA 57.849 39.130 0.00 0.00 37.81 4.57
5528 5854 5.550290 TGATTCACTCACTTAGATGTGCAA 58.450 37.500 0.00 0.00 37.81 4.08
5529 5855 6.175471 TGATTCACTCACTTAGATGTGCAAT 58.825 36.000 0.00 0.00 37.81 3.56
5530 5856 7.330262 TGATTCACTCACTTAGATGTGCAATA 58.670 34.615 0.00 0.00 37.81 1.90
5531 5857 7.823799 TGATTCACTCACTTAGATGTGCAATAA 59.176 33.333 0.00 0.00 37.81 1.40
5532 5858 6.968131 TCACTCACTTAGATGTGCAATAAC 57.032 37.500 0.00 0.00 37.81 1.89
5533 5859 6.701340 TCACTCACTTAGATGTGCAATAACT 58.299 36.000 0.00 0.00 37.81 2.24
5534 5860 7.836842 TCACTCACTTAGATGTGCAATAACTA 58.163 34.615 0.00 0.00 37.81 2.24
5535 5861 7.976175 TCACTCACTTAGATGTGCAATAACTAG 59.024 37.037 0.00 0.00 37.81 2.57
5536 5862 7.976175 CACTCACTTAGATGTGCAATAACTAGA 59.024 37.037 0.00 0.00 37.81 2.43
5537 5863 8.194104 ACTCACTTAGATGTGCAATAACTAGAG 58.806 37.037 0.00 0.00 37.81 2.43
5538 5864 6.980978 TCACTTAGATGTGCAATAACTAGAGC 59.019 38.462 0.00 0.00 37.81 4.09
5539 5865 6.758416 CACTTAGATGTGCAATAACTAGAGCA 59.242 38.462 0.00 0.00 34.10 4.26
5561 5887 4.250116 CATCTAGATGTGCCCTAGACAC 57.750 50.000 22.42 8.47 43.57 3.67
5565 5891 3.478780 TGTGCCCTAGACACACCC 58.521 61.111 12.81 0.00 42.88 4.61
5566 5892 1.152118 TGTGCCCTAGACACACCCT 60.152 57.895 12.81 0.00 42.88 4.34
5567 5893 0.115547 TGTGCCCTAGACACACCCTA 59.884 55.000 12.81 0.00 42.88 3.53
5568 5894 1.273609 TGTGCCCTAGACACACCCTAT 60.274 52.381 12.81 0.00 42.88 2.57
5569 5895 2.023791 TGTGCCCTAGACACACCCTATA 60.024 50.000 12.81 0.00 42.88 1.31
5582 5908 7.888021 AGACACACCCTATAATTTTTGTCATGA 59.112 33.333 0.00 0.00 35.60 3.07
5583 5909 7.826690 ACACACCCTATAATTTTTGTCATGAC 58.173 34.615 19.27 19.27 0.00 3.06
5763 6101 0.402121 GGGAAGTTCCACCTGCTCTT 59.598 55.000 23.33 0.00 38.64 2.85
5891 6250 0.818296 AGTCTAACCTACTGCAGCGG 59.182 55.000 15.27 17.12 0.00 5.52
5914 6273 5.867716 GGTTTTGTCGCTTAATCTCACTCTA 59.132 40.000 0.00 0.00 0.00 2.43
6065 6424 4.021894 CGTAAGTGATCTATCCCCCTTCTG 60.022 50.000 0.00 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.530744 TGGAGGAGATTTGGTCGTCG 59.469 55.000 0.00 0.00 30.99 5.12
1 2 2.622436 CTTGGAGGAGATTTGGTCGTC 58.378 52.381 0.00 0.00 0.00 4.20
2 3 1.339151 GCTTGGAGGAGATTTGGTCGT 60.339 52.381 0.00 0.00 0.00 4.34
3 4 1.373570 GCTTGGAGGAGATTTGGTCG 58.626 55.000 0.00 0.00 0.00 4.79
4 5 1.066143 TCGCTTGGAGGAGATTTGGTC 60.066 52.381 0.00 0.00 0.00 4.02
5 6 0.984230 TCGCTTGGAGGAGATTTGGT 59.016 50.000 0.00 0.00 0.00 3.67
6 7 1.373570 GTCGCTTGGAGGAGATTTGG 58.626 55.000 0.00 0.00 0.00 3.28
7 8 1.002366 CGTCGCTTGGAGGAGATTTG 58.998 55.000 0.00 0.00 32.22 2.32
8 9 0.108138 CCGTCGCTTGGAGGAGATTT 60.108 55.000 0.00 0.00 32.22 2.17
9 10 1.517832 CCGTCGCTTGGAGGAGATT 59.482 57.895 0.00 0.00 32.22 2.40
10 11 3.082579 GCCGTCGCTTGGAGGAGAT 62.083 63.158 0.00 0.00 32.22 2.75
11 12 3.760035 GCCGTCGCTTGGAGGAGA 61.760 66.667 0.00 0.00 32.22 3.71
12 13 4.821589 GGCCGTCGCTTGGAGGAG 62.822 72.222 0.00 0.00 32.22 3.69
14 15 4.697756 TTGGCCGTCGCTTGGAGG 62.698 66.667 0.00 0.00 34.44 4.30
15 16 2.258013 TTTTGGCCGTCGCTTGGAG 61.258 57.895 0.00 0.00 34.44 3.86
16 17 2.203224 TTTTGGCCGTCGCTTGGA 60.203 55.556 0.00 0.00 34.44 3.53
17 18 2.050442 GTTTTGGCCGTCGCTTGG 60.050 61.111 0.00 0.00 34.44 3.61
18 19 1.082104 GAGTTTTGGCCGTCGCTTG 60.082 57.895 0.00 0.00 34.44 4.01
19 20 2.258726 GGAGTTTTGGCCGTCGCTT 61.259 57.895 0.00 0.00 34.44 4.68
20 21 1.823169 TAGGAGTTTTGGCCGTCGCT 61.823 55.000 0.00 0.00 34.44 4.93
21 22 1.375013 TAGGAGTTTTGGCCGTCGC 60.375 57.895 0.00 0.00 0.00 5.19
22 23 1.349259 CGTAGGAGTTTTGGCCGTCG 61.349 60.000 0.00 0.00 0.00 5.12
23 24 0.037975 TCGTAGGAGTTTTGGCCGTC 60.038 55.000 0.00 0.00 0.00 4.79
24 25 0.393820 TTCGTAGGAGTTTTGGCCGT 59.606 50.000 0.00 0.00 0.00 5.68
25 26 1.463444 CTTTCGTAGGAGTTTTGGCCG 59.537 52.381 0.00 0.00 0.00 6.13
26 27 1.199327 GCTTTCGTAGGAGTTTTGGCC 59.801 52.381 0.00 0.00 0.00 5.36
27 28 1.136057 CGCTTTCGTAGGAGTTTTGGC 60.136 52.381 0.00 0.00 0.00 4.52
28 29 1.136057 GCGCTTTCGTAGGAGTTTTGG 60.136 52.381 0.00 0.00 38.14 3.28
29 30 1.461888 CGCGCTTTCGTAGGAGTTTTG 60.462 52.381 5.56 0.00 38.14 2.44
30 31 0.788391 CGCGCTTTCGTAGGAGTTTT 59.212 50.000 5.56 0.00 38.14 2.43
31 32 1.012486 CCGCGCTTTCGTAGGAGTTT 61.012 55.000 5.56 0.00 37.66 2.66
32 33 1.445582 CCGCGCTTTCGTAGGAGTT 60.446 57.895 5.56 0.00 37.66 3.01
33 34 2.181021 CCGCGCTTTCGTAGGAGT 59.819 61.111 5.56 0.00 37.66 3.85
34 35 2.582498 CCCGCGCTTTCGTAGGAG 60.582 66.667 5.56 0.00 37.66 3.69
35 36 4.807039 GCCCGCGCTTTCGTAGGA 62.807 66.667 5.56 0.00 37.66 2.94
56 57 4.451150 TCTCGACATGGCCGCCAC 62.451 66.667 16.16 0.61 35.80 5.01
57 58 4.451150 GTCTCGACATGGCCGCCA 62.451 66.667 16.17 16.17 38.19 5.69
59 60 4.796231 ACGTCTCGACATGGCCGC 62.796 66.667 0.00 0.00 0.00 6.53
60 61 2.613739 ATCACGTCTCGACATGGCCG 62.614 60.000 0.00 0.00 0.00 6.13
61 62 0.460284 AATCACGTCTCGACATGGCC 60.460 55.000 0.00 0.00 0.00 5.36
62 63 1.061131 CAAATCACGTCTCGACATGGC 59.939 52.381 0.00 0.00 0.00 4.40
63 64 1.660607 CCAAATCACGTCTCGACATGG 59.339 52.381 0.00 0.00 0.00 3.66
64 65 2.337583 ACCAAATCACGTCTCGACATG 58.662 47.619 0.00 0.00 0.00 3.21
65 66 2.743636 ACCAAATCACGTCTCGACAT 57.256 45.000 0.00 0.00 0.00 3.06
66 67 3.507786 CATACCAAATCACGTCTCGACA 58.492 45.455 0.00 0.00 0.00 4.35
67 68 2.858344 CCATACCAAATCACGTCTCGAC 59.142 50.000 0.00 0.00 0.00 4.20
68 69 2.756207 TCCATACCAAATCACGTCTCGA 59.244 45.455 0.00 0.00 0.00 4.04
69 70 2.858344 GTCCATACCAAATCACGTCTCG 59.142 50.000 0.00 0.00 0.00 4.04
70 71 2.858344 CGTCCATACCAAATCACGTCTC 59.142 50.000 0.00 0.00 0.00 3.36
71 72 2.418197 CCGTCCATACCAAATCACGTCT 60.418 50.000 0.00 0.00 0.00 4.18
72 73 1.931172 CCGTCCATACCAAATCACGTC 59.069 52.381 0.00 0.00 0.00 4.34
73 74 2.010043 GCCGTCCATACCAAATCACGT 61.010 52.381 0.00 0.00 0.00 4.49
74 75 0.655733 GCCGTCCATACCAAATCACG 59.344 55.000 0.00 0.00 0.00 4.35
75 76 1.021968 GGCCGTCCATACCAAATCAC 58.978 55.000 0.00 0.00 0.00 3.06
76 77 0.462937 CGGCCGTCCATACCAAATCA 60.463 55.000 19.50 0.00 0.00 2.57
77 78 1.164041 CCGGCCGTCCATACCAAATC 61.164 60.000 26.12 0.00 0.00 2.17
78 79 1.153046 CCGGCCGTCCATACCAAAT 60.153 57.895 26.12 0.00 0.00 2.32
79 80 2.269562 CCGGCCGTCCATACCAAA 59.730 61.111 26.12 0.00 0.00 3.28
80 81 3.788145 CCCGGCCGTCCATACCAA 61.788 66.667 26.12 0.00 0.00 3.67
81 82 4.781616 TCCCGGCCGTCCATACCA 62.782 66.667 26.12 0.00 0.00 3.25
82 83 3.925090 CTCCCGGCCGTCCATACC 61.925 72.222 26.12 0.00 0.00 2.73
83 84 2.207924 ATCTCCCGGCCGTCCATAC 61.208 63.158 26.12 0.00 0.00 2.39
84 85 2.200370 ATCTCCCGGCCGTCCATA 59.800 61.111 26.12 5.59 0.00 2.74
85 86 3.550431 CATCTCCCGGCCGTCCAT 61.550 66.667 26.12 7.37 0.00 3.41
86 87 4.770362 TCATCTCCCGGCCGTCCA 62.770 66.667 26.12 6.03 0.00 4.02
87 88 3.917760 CTCATCTCCCGGCCGTCC 61.918 72.222 26.12 0.00 0.00 4.79
88 89 4.593864 GCTCATCTCCCGGCCGTC 62.594 72.222 26.12 0.00 0.00 4.79
90 91 4.598894 CTGCTCATCTCCCGGCCG 62.599 72.222 21.04 21.04 0.00 6.13
91 92 3.474570 ACTGCTCATCTCCCGGCC 61.475 66.667 0.00 0.00 0.00 6.13
92 93 2.202987 CACTGCTCATCTCCCGGC 60.203 66.667 0.00 0.00 0.00 6.13
93 94 1.440893 CTCACTGCTCATCTCCCGG 59.559 63.158 0.00 0.00 0.00 5.73
94 95 1.039785 TCCTCACTGCTCATCTCCCG 61.040 60.000 0.00 0.00 0.00 5.14
95 96 0.752054 CTCCTCACTGCTCATCTCCC 59.248 60.000 0.00 0.00 0.00 4.30
96 97 0.752054 CCTCCTCACTGCTCATCTCC 59.248 60.000 0.00 0.00 0.00 3.71
97 98 0.104671 GCCTCCTCACTGCTCATCTC 59.895 60.000 0.00 0.00 0.00 2.75
98 99 1.674764 CGCCTCCTCACTGCTCATCT 61.675 60.000 0.00 0.00 0.00 2.90
99 100 1.227205 CGCCTCCTCACTGCTCATC 60.227 63.158 0.00 0.00 0.00 2.92
100 101 2.729479 CCGCCTCCTCACTGCTCAT 61.729 63.158 0.00 0.00 0.00 2.90
101 102 3.385384 CCGCCTCCTCACTGCTCA 61.385 66.667 0.00 0.00 0.00 4.26
102 103 4.828925 GCCGCCTCCTCACTGCTC 62.829 72.222 0.00 0.00 0.00 4.26
110 111 3.751049 TATTCTCCGGCCGCCTCCT 62.751 63.158 22.85 6.29 0.00 3.69
111 112 3.227792 CTATTCTCCGGCCGCCTCC 62.228 68.421 22.85 0.00 0.00 4.30
112 113 2.340443 CTATTCTCCGGCCGCCTC 59.660 66.667 22.85 0.00 0.00 4.70
113 114 2.444140 ACTATTCTCCGGCCGCCT 60.444 61.111 22.85 3.88 0.00 5.52
114 115 2.280186 CACTATTCTCCGGCCGCC 60.280 66.667 22.85 0.00 0.00 6.13
115 116 2.280186 CCACTATTCTCCGGCCGC 60.280 66.667 22.85 0.00 0.00 6.53
116 117 2.280186 GCCACTATTCTCCGGCCG 60.280 66.667 21.04 21.04 38.67 6.13
117 118 2.280186 CGCCACTATTCTCCGGCC 60.280 66.667 0.00 0.00 41.71 6.13
118 119 2.280186 CCGCCACTATTCTCCGGC 60.280 66.667 0.00 0.00 41.30 6.13
119 120 2.280186 GCCGCCACTATTCTCCGG 60.280 66.667 0.00 0.00 41.72 5.14
120 121 2.658593 CGCCGCCACTATTCTCCG 60.659 66.667 0.00 0.00 0.00 4.63
121 122 2.967615 GCGCCGCCACTATTCTCC 60.968 66.667 0.00 0.00 0.00 3.71
164 165 2.742372 CTTCAACGCCTCCACCCG 60.742 66.667 0.00 0.00 0.00 5.28
165 166 2.180159 TAGCTTCAACGCCTCCACCC 62.180 60.000 0.00 0.00 0.00 4.61
166 167 0.321298 TTAGCTTCAACGCCTCCACC 60.321 55.000 0.00 0.00 0.00 4.61
167 168 1.398390 CATTAGCTTCAACGCCTCCAC 59.602 52.381 0.00 0.00 0.00 4.02
168 169 1.678728 CCATTAGCTTCAACGCCTCCA 60.679 52.381 0.00 0.00 0.00 3.86
169 170 1.017387 CCATTAGCTTCAACGCCTCC 58.983 55.000 0.00 0.00 0.00 4.30
170 171 1.666189 GTCCATTAGCTTCAACGCCTC 59.334 52.381 0.00 0.00 0.00 4.70
171 172 1.279271 AGTCCATTAGCTTCAACGCCT 59.721 47.619 0.00 0.00 0.00 5.52
172 173 1.398390 CAGTCCATTAGCTTCAACGCC 59.602 52.381 0.00 0.00 0.00 5.68
173 174 2.076863 ACAGTCCATTAGCTTCAACGC 58.923 47.619 0.00 0.00 0.00 4.84
174 175 4.929808 ACTAACAGTCCATTAGCTTCAACG 59.070 41.667 0.00 0.00 33.66 4.10
175 176 5.701290 ACACTAACAGTCCATTAGCTTCAAC 59.299 40.000 0.00 0.00 33.66 3.18
176 177 5.865085 ACACTAACAGTCCATTAGCTTCAA 58.135 37.500 0.00 0.00 33.66 2.69
177 178 5.479306 GACACTAACAGTCCATTAGCTTCA 58.521 41.667 0.00 0.00 33.66 3.02
188 189 2.028930 CCTGTCAGGGACACTAACAGTC 60.029 54.545 11.46 0.00 37.67 3.51
189 190 1.971357 CCTGTCAGGGACACTAACAGT 59.029 52.381 11.46 0.00 37.67 3.55
190 191 1.338200 GCCTGTCAGGGACACTAACAG 60.338 57.143 20.72 0.37 37.67 3.16
191 192 0.685097 GCCTGTCAGGGACACTAACA 59.315 55.000 20.72 0.00 37.67 2.41
192 193 0.389948 CGCCTGTCAGGGACACTAAC 60.390 60.000 20.72 0.04 37.67 2.34
193 194 1.541310 CCGCCTGTCAGGGACACTAA 61.541 60.000 20.72 0.00 37.67 2.24
194 195 1.982395 CCGCCTGTCAGGGACACTA 60.982 63.158 20.72 0.00 37.67 2.74
195 196 3.314331 CCGCCTGTCAGGGACACT 61.314 66.667 20.72 0.00 37.67 3.55
245 246 2.380410 AAACAGACATCGCGCGGAC 61.380 57.895 31.69 15.12 0.00 4.79
246 247 2.048597 AAACAGACATCGCGCGGA 60.049 55.556 31.69 17.27 0.00 5.54
247 248 2.096406 CAAACAGACATCGCGCGG 59.904 61.111 31.69 17.77 0.00 6.46
248 249 1.225475 GTCAAACAGACATCGCGCG 60.225 57.895 26.76 26.76 46.77 6.86
249 250 4.725758 GTCAAACAGACATCGCGC 57.274 55.556 0.00 0.00 46.77 6.86
261 262 1.894756 CGCCGAGTTTGGGGTCAAA 60.895 57.895 0.00 0.00 40.23 2.69
262 263 2.281208 CGCCGAGTTTGGGGTCAA 60.281 61.111 0.00 0.00 37.20 3.18
265 266 4.572571 TTGCGCCGAGTTTGGGGT 62.573 61.111 4.18 0.00 43.50 4.95
266 267 3.737172 CTTGCGCCGAGTTTGGGG 61.737 66.667 4.18 0.00 44.36 4.96
267 268 2.070654 AAACTTGCGCCGAGTTTGGG 62.071 55.000 27.70 3.91 43.80 4.12
268 269 1.358759 AAACTTGCGCCGAGTTTGG 59.641 52.632 27.70 5.23 43.80 3.28
270 271 1.358759 CCAAACTTGCGCCGAGTTT 59.641 52.632 24.71 24.71 45.62 2.66
271 272 2.551912 CCCAAACTTGCGCCGAGTT 61.552 57.895 17.47 17.47 39.51 3.01
272 273 2.978010 CCCAAACTTGCGCCGAGT 60.978 61.111 4.18 6.29 0.00 4.18
273 274 4.404654 GCCCAAACTTGCGCCGAG 62.405 66.667 4.18 5.52 0.00 4.63
279 280 2.282783 ATTCCCGGCCCAAACTTGC 61.283 57.895 0.00 0.00 0.00 4.01
280 281 0.897863 TCATTCCCGGCCCAAACTTG 60.898 55.000 0.00 0.00 0.00 3.16
281 282 0.611896 CTCATTCCCGGCCCAAACTT 60.612 55.000 0.00 0.00 0.00 2.66
282 283 1.000896 CTCATTCCCGGCCCAAACT 60.001 57.895 0.00 0.00 0.00 2.66
283 284 1.304134 ACTCATTCCCGGCCCAAAC 60.304 57.895 0.00 0.00 0.00 2.93
284 285 1.001393 GACTCATTCCCGGCCCAAA 60.001 57.895 0.00 0.00 0.00 3.28
285 286 2.674754 GACTCATTCCCGGCCCAA 59.325 61.111 0.00 0.00 0.00 4.12
286 287 3.781307 CGACTCATTCCCGGCCCA 61.781 66.667 0.00 0.00 0.00 5.36
287 288 2.530958 TTTCGACTCATTCCCGGCCC 62.531 60.000 0.00 0.00 0.00 5.80
288 289 0.675522 TTTTCGACTCATTCCCGGCC 60.676 55.000 0.00 0.00 0.00 6.13
289 290 0.446616 GTTTTCGACTCATTCCCGGC 59.553 55.000 0.00 0.00 0.00 6.13
309 310 1.068741 ACAGCTATCCGGATTTCGTCC 59.931 52.381 24.71 5.02 44.10 4.79
310 311 2.395654 GACAGCTATCCGGATTTCGTC 58.604 52.381 24.71 19.01 37.11 4.20
311 312 1.068741 GGACAGCTATCCGGATTTCGT 59.931 52.381 24.71 14.73 37.11 3.85
312 313 1.068588 TGGACAGCTATCCGGATTTCG 59.931 52.381 24.71 12.65 42.24 3.46
313 314 2.910688 TGGACAGCTATCCGGATTTC 57.089 50.000 24.71 14.55 42.24 2.17
314 315 3.864789 AATGGACAGCTATCCGGATTT 57.135 42.857 24.71 1.54 42.24 2.17
315 316 3.480470 CAAATGGACAGCTATCCGGATT 58.520 45.455 24.71 3.15 42.24 3.01
316 317 2.224621 CCAAATGGACAGCTATCCGGAT 60.225 50.000 22.95 22.95 42.24 4.18
317 318 1.140852 CCAAATGGACAGCTATCCGGA 59.859 52.381 6.61 6.61 42.24 5.14
318 319 1.597742 CCAAATGGACAGCTATCCGG 58.402 55.000 6.54 0.00 42.24 5.14
319 320 1.597742 CCCAAATGGACAGCTATCCG 58.402 55.000 6.54 0.00 42.24 4.18
320 321 1.986882 CCCCAAATGGACAGCTATCC 58.013 55.000 3.32 3.32 39.45 2.59
321 322 1.322442 GCCCCAAATGGACAGCTATC 58.678 55.000 0.00 0.00 37.39 2.08
322 323 0.106015 GGCCCCAAATGGACAGCTAT 60.106 55.000 0.00 0.00 37.39 2.97
323 324 1.306296 GGCCCCAAATGGACAGCTA 59.694 57.895 0.00 0.00 37.39 3.32
324 325 2.037847 GGCCCCAAATGGACAGCT 59.962 61.111 0.00 0.00 37.39 4.24
325 326 2.283821 TGGCCCCAAATGGACAGC 60.284 61.111 0.00 0.97 38.98 4.40
326 327 2.342650 CGTGGCCCCAAATGGACAG 61.343 63.158 0.00 0.00 46.58 3.51
327 328 2.282816 CGTGGCCCCAAATGGACA 60.283 61.111 0.00 0.00 42.71 4.02
328 329 2.830186 TAGCGTGGCCCCAAATGGAC 62.830 60.000 0.00 0.00 37.39 4.02
329 330 1.932156 ATAGCGTGGCCCCAAATGGA 61.932 55.000 0.00 0.00 37.39 3.41
330 331 1.042559 AATAGCGTGGCCCCAAATGG 61.043 55.000 0.00 0.00 0.00 3.16
331 332 0.385390 GAATAGCGTGGCCCCAAATG 59.615 55.000 0.00 0.00 0.00 2.32
332 333 1.101049 CGAATAGCGTGGCCCCAAAT 61.101 55.000 0.00 0.00 34.64 2.32
333 334 1.747367 CGAATAGCGTGGCCCCAAA 60.747 57.895 0.00 0.00 34.64 3.28
334 335 2.124901 CGAATAGCGTGGCCCCAA 60.125 61.111 0.00 0.00 34.64 4.12
344 345 1.935873 GGGGTAAAACGGACGAATAGC 59.064 52.381 0.00 0.00 0.00 2.97
345 346 3.249986 TGGGGTAAAACGGACGAATAG 57.750 47.619 0.00 0.00 0.00 1.73
346 347 3.692257 TTGGGGTAAAACGGACGAATA 57.308 42.857 0.00 0.00 0.00 1.75
347 348 2.553602 GTTTGGGGTAAAACGGACGAAT 59.446 45.455 0.00 0.00 30.90 3.34
348 349 1.946081 GTTTGGGGTAAAACGGACGAA 59.054 47.619 0.00 0.00 30.90 3.85
349 350 1.592064 GTTTGGGGTAAAACGGACGA 58.408 50.000 0.00 0.00 30.90 4.20
355 356 0.040157 GCGTCCGTTTGGGGTAAAAC 60.040 55.000 0.00 0.00 36.81 2.43
356 357 0.465097 TGCGTCCGTTTGGGGTAAAA 60.465 50.000 0.00 0.00 36.01 1.52
357 358 1.147824 TGCGTCCGTTTGGGGTAAA 59.852 52.632 0.00 0.00 36.01 2.01
358 359 1.597578 GTGCGTCCGTTTGGGGTAA 60.598 57.895 0.00 0.00 36.01 2.85
359 360 2.030862 GTGCGTCCGTTTGGGGTA 59.969 61.111 0.00 0.00 36.01 3.69
360 361 4.941309 GGTGCGTCCGTTTGGGGT 62.941 66.667 0.00 0.00 36.01 4.95
370 371 3.771160 ATCCTGTCCGGGTGCGTC 61.771 66.667 0.00 0.00 0.00 5.19
371 372 4.082523 CATCCTGTCCGGGTGCGT 62.083 66.667 0.00 0.00 37.02 5.24
372 373 4.838152 CCATCCTGTCCGGGTGCG 62.838 72.222 0.00 0.00 42.98 5.34
373 374 4.489771 CCCATCCTGTCCGGGTGC 62.490 72.222 0.00 0.00 42.98 5.01
374 375 3.797353 CCCCATCCTGTCCGGGTG 61.797 72.222 0.00 0.00 44.01 4.61
375 376 4.348495 ACCCCATCCTGTCCGGGT 62.348 66.667 0.00 0.00 44.24 5.28
376 377 3.480133 GACCCCATCCTGTCCGGG 61.480 72.222 0.00 0.00 41.71 5.73
377 378 3.849951 CGACCCCATCCTGTCCGG 61.850 72.222 0.00 0.00 0.00 5.14
378 379 4.530857 GCGACCCCATCCTGTCCG 62.531 72.222 0.00 0.00 0.00 4.79
379 380 4.530857 CGCGACCCCATCCTGTCC 62.531 72.222 0.00 0.00 0.00 4.02
390 391 4.430423 CAACTTCAGCGCGCGACC 62.430 66.667 37.18 17.71 0.00 4.79
391 392 4.430423 CCAACTTCAGCGCGCGAC 62.430 66.667 37.18 24.64 0.00 5.19
392 393 4.961511 ACCAACTTCAGCGCGCGA 62.962 61.111 37.18 22.55 0.00 5.87
393 394 4.430423 GACCAACTTCAGCGCGCG 62.430 66.667 28.44 28.44 0.00 6.86
394 395 1.289109 TTAGACCAACTTCAGCGCGC 61.289 55.000 26.66 26.66 0.00 6.86
395 396 0.438830 GTTAGACCAACTTCAGCGCG 59.561 55.000 0.00 0.00 34.06 6.86
396 397 0.438830 CGTTAGACCAACTTCAGCGC 59.561 55.000 0.00 0.00 34.77 5.92
397 398 1.455786 CACGTTAGACCAACTTCAGCG 59.544 52.381 0.00 0.00 34.77 5.18
398 399 2.475487 GACACGTTAGACCAACTTCAGC 59.525 50.000 0.00 0.00 34.77 4.26
399 400 3.057734 GGACACGTTAGACCAACTTCAG 58.942 50.000 0.00 0.00 34.77 3.02
400 401 2.431419 TGGACACGTTAGACCAACTTCA 59.569 45.455 0.00 0.00 34.77 3.02
401 402 3.102052 TGGACACGTTAGACCAACTTC 57.898 47.619 0.00 0.00 34.77 3.01
402 403 3.547054 TTGGACACGTTAGACCAACTT 57.453 42.857 5.87 0.00 37.46 2.66
403 404 3.181458 ACATTGGACACGTTAGACCAACT 60.181 43.478 10.97 0.00 43.60 3.16
404 405 3.135994 ACATTGGACACGTTAGACCAAC 58.864 45.455 10.97 0.00 43.60 3.77
405 406 3.478857 ACATTGGACACGTTAGACCAA 57.521 42.857 11.11 11.11 44.63 3.67
406 407 3.135225 CAACATTGGACACGTTAGACCA 58.865 45.455 0.00 0.00 0.00 4.02
407 408 3.806316 CAACATTGGACACGTTAGACC 57.194 47.619 0.00 0.00 0.00 3.85
497 504 3.739300 CGAAAACGTGGTGAGTATTGAGT 59.261 43.478 0.00 0.00 0.00 3.41
535 542 8.699749 TGAATATCTTTCGTATTTATGAGTGCG 58.300 33.333 0.00 0.00 0.00 5.34
551 558 6.939163 GCTGATACTGGGTGATGAATATCTTT 59.061 38.462 0.00 0.00 34.31 2.52
562 569 1.764723 CTCCATGCTGATACTGGGTGA 59.235 52.381 0.00 0.00 0.00 4.02
708 715 2.786539 TTCTACGGTGGCTGCAGCTG 62.787 60.000 35.82 24.53 41.70 4.24
709 716 2.583441 TTCTACGGTGGCTGCAGCT 61.583 57.895 35.82 19.83 41.70 4.24
710 717 2.047274 TTCTACGGTGGCTGCAGC 60.047 61.111 30.88 30.88 41.14 5.25
711 718 1.741770 GGTTCTACGGTGGCTGCAG 60.742 63.158 10.11 10.11 0.00 4.41
902 922 1.536662 GGTGGGAGTGTGGAGAGGT 60.537 63.158 0.00 0.00 0.00 3.85
918 938 0.999712 CCAGGGTAGGGTTTGATGGT 59.000 55.000 0.00 0.00 0.00 3.55
1588 1617 1.065709 TCCTAACCTTTCCATGCGGAC 60.066 52.381 0.00 0.00 42.67 4.79
1687 1716 0.318445 CAAGAACGTTCGGTCCGTCT 60.318 55.000 21.87 3.14 37.61 4.18
1720 1749 0.883153 TCCGTTAGTGCGTCTAAGCA 59.117 50.000 2.15 0.00 45.96 3.91
1730 1759 0.719465 GGCGTGTTCATCCGTTAGTG 59.281 55.000 0.00 0.00 0.00 2.74
1755 1784 1.722464 CACATTGGCAAATTGAGCGTG 59.278 47.619 3.01 0.00 0.00 5.34
1760 1789 3.367190 CGGATCACACATTGGCAAATTGA 60.367 43.478 15.96 10.90 0.00 2.57
1852 1885 7.996758 AGATACCTTTCTTCCTGGAGAATTA 57.003 36.000 0.00 0.00 35.70 1.40
1901 1934 2.980233 AGGTTCGCCACAGCAAGC 60.980 61.111 0.00 0.00 39.83 4.01
1946 1980 2.408271 AAGCAGATCAGATTCGCCAA 57.592 45.000 0.00 0.00 0.00 4.52
2104 2179 0.321653 GATCAAGTCAGGCACCGGTT 60.322 55.000 2.97 0.00 0.00 4.44
2140 2215 6.441274 CACACATTATGCATCAAAGATACCC 58.559 40.000 0.19 0.00 0.00 3.69
2246 2338 2.034558 GCACAAAAACTGAGCTAGGCAA 59.965 45.455 0.00 0.00 38.48 4.52
2590 2740 8.768955 CATGGTAATTAGAACATAACTCTCAGC 58.231 37.037 0.00 0.00 0.00 4.26
2770 2920 8.502387 GCATGAAAAGATAGAATATCACAGGAC 58.498 37.037 0.00 0.00 0.00 3.85
2863 3015 5.399933 ACTGAACAGTTTGCTAGTGCACAA 61.400 41.667 21.04 0.77 40.78 3.33
3129 3423 3.118038 AGAAAACCAAGACCACTACAGCA 60.118 43.478 0.00 0.00 0.00 4.41
3253 3547 7.643764 CCTGGTCAATTTATAAAACAGCATACG 59.356 37.037 1.21 0.00 0.00 3.06
3275 3569 5.321927 ACCTGTAAGAAAATAACACCCTGG 58.678 41.667 0.00 0.00 34.07 4.45
3520 3814 5.570589 GTCGGCTCAATTTCTGAAATTTGAG 59.429 40.000 28.02 28.02 46.24 3.02
3888 4195 3.554934 TGAGGTGATATTTGGGCACATC 58.445 45.455 0.00 0.00 41.95 3.06
4101 4408 4.473520 ATCGGGGTGCTTCAGGCG 62.474 66.667 0.00 0.00 45.43 5.52
4137 4444 3.282885 GAGCAAAACCTAATCCCTCCAG 58.717 50.000 0.00 0.00 0.00 3.86
4377 4685 3.204526 GTTCAGATCATTCAGCTCTGGG 58.795 50.000 0.00 0.00 40.16 4.45
4473 4781 3.182967 GGACACTGAAGAAGCATCTACG 58.817 50.000 0.00 0.00 33.77 3.51
4495 4803 7.064253 ACTCGTGCACTAACCATTTATAAGTTC 59.936 37.037 16.19 0.00 0.00 3.01
4517 4825 2.148916 TCACAGGCTGTAAACACTCG 57.851 50.000 21.59 5.37 0.00 4.18
4522 4830 5.273944 CAGAAAGTTTCACAGGCTGTAAAC 58.726 41.667 27.11 27.11 30.88 2.01
4603 4911 7.389232 TCTGATTGCTCCGATTAACATATCAT 58.611 34.615 0.00 0.00 0.00 2.45
4733 5041 5.244626 GGGAACATAAGATTATGGCAATGCT 59.755 40.000 15.17 0.00 43.69 3.79
4735 5043 5.241506 ACGGGAACATAAGATTATGGCAATG 59.758 40.000 15.17 0.00 43.69 2.82
4969 5289 5.668866 GCAGTAAACGAATGTGAGTGATCAC 60.669 44.000 18.47 18.47 40.78 3.06
5064 5384 0.604780 TGCCTTGCTTCAGCTCAGAC 60.605 55.000 0.00 0.00 42.66 3.51
5214 5537 6.258947 GCAGAGAAACAAGAAACAGTAGAGTT 59.741 38.462 0.00 0.00 0.00 3.01
5216 5539 5.755375 TGCAGAGAAACAAGAAACAGTAGAG 59.245 40.000 0.00 0.00 0.00 2.43
5217 5540 5.670485 TGCAGAGAAACAAGAAACAGTAGA 58.330 37.500 0.00 0.00 0.00 2.59
5220 5543 5.643379 TTTGCAGAGAAACAAGAAACAGT 57.357 34.783 0.00 0.00 0.00 3.55
5221 5544 6.949578 TTTTTGCAGAGAAACAAGAAACAG 57.050 33.333 0.00 0.00 0.00 3.16
5222 5545 7.322664 AGATTTTTGCAGAGAAACAAGAAACA 58.677 30.769 0.00 0.00 0.00 2.83
5223 5546 7.489113 TGAGATTTTTGCAGAGAAACAAGAAAC 59.511 33.333 0.00 0.00 0.00 2.78
5224 5547 7.546358 TGAGATTTTTGCAGAGAAACAAGAAA 58.454 30.769 0.00 0.00 0.00 2.52
5410 5736 6.356556 ACTTAGATGTGCAATACTTATGGCA 58.643 36.000 0.00 0.00 40.19 4.92
5411 5737 6.483307 TGACTTAGATGTGCAATACTTATGGC 59.517 38.462 0.00 0.00 33.16 4.40
5412 5738 8.613060 ATGACTTAGATGTGCAATACTTATGG 57.387 34.615 0.00 0.00 0.00 2.74
5416 5742 9.265901 GACATATGACTTAGATGTGCAATACTT 57.734 33.333 10.38 0.00 41.09 2.24
5417 5743 8.424133 TGACATATGACTTAGATGTGCAATACT 58.576 33.333 10.38 0.00 41.09 2.12
5418 5744 8.593492 TGACATATGACTTAGATGTGCAATAC 57.407 34.615 10.38 0.00 41.09 1.89
5419 5745 9.783081 AATGACATATGACTTAGATGTGCAATA 57.217 29.630 10.38 0.00 41.09 1.90
5420 5746 8.565416 CAATGACATATGACTTAGATGTGCAAT 58.435 33.333 10.38 0.00 41.09 3.56
5421 5747 7.769970 TCAATGACATATGACTTAGATGTGCAA 59.230 33.333 10.38 0.00 41.09 4.08
5422 5748 7.274447 TCAATGACATATGACTTAGATGTGCA 58.726 34.615 10.38 0.00 41.09 4.57
5423 5749 7.719778 TCAATGACATATGACTTAGATGTGC 57.280 36.000 10.38 0.00 41.09 4.57
5424 5750 9.708092 AGATCAATGACATATGACTTAGATGTG 57.292 33.333 10.38 0.00 41.09 3.21
5438 5764 8.771766 CGAATCTCAATGTAAGATCAATGACAT 58.228 33.333 0.00 0.00 32.29 3.06
5439 5765 7.765819 ACGAATCTCAATGTAAGATCAATGACA 59.234 33.333 0.00 0.00 32.29 3.58
5440 5766 8.060679 CACGAATCTCAATGTAAGATCAATGAC 58.939 37.037 0.00 0.00 32.29 3.06
5441 5767 7.765819 ACACGAATCTCAATGTAAGATCAATGA 59.234 33.333 0.00 0.00 32.29 2.57
5442 5768 7.849515 CACACGAATCTCAATGTAAGATCAATG 59.150 37.037 0.00 0.00 32.29 2.82
5443 5769 7.765819 TCACACGAATCTCAATGTAAGATCAAT 59.234 33.333 0.00 0.00 32.29 2.57
5444 5770 7.096551 TCACACGAATCTCAATGTAAGATCAA 58.903 34.615 0.00 0.00 32.29 2.57
5445 5771 6.630071 TCACACGAATCTCAATGTAAGATCA 58.370 36.000 0.00 0.00 32.29 2.92
5446 5772 7.525688 TTCACACGAATCTCAATGTAAGATC 57.474 36.000 0.00 0.00 32.29 2.75
5447 5773 9.770097 ATATTCACACGAATCTCAATGTAAGAT 57.230 29.630 0.00 0.00 41.09 2.40
5448 5774 9.599866 AATATTCACACGAATCTCAATGTAAGA 57.400 29.630 0.00 0.00 41.09 2.10
5452 5778 8.950210 AGAAAATATTCACACGAATCTCAATGT 58.050 29.630 0.00 0.00 41.09 2.71
5453 5779 9.430838 GAGAAAATATTCACACGAATCTCAATG 57.569 33.333 0.00 0.00 41.09 2.82
5454 5780 9.388506 AGAGAAAATATTCACACGAATCTCAAT 57.611 29.630 0.00 0.00 41.09 2.57
5455 5781 8.777865 AGAGAAAATATTCACACGAATCTCAA 57.222 30.769 0.00 0.00 41.09 3.02
5456 5782 8.253810 AGAGAGAAAATATTCACACGAATCTCA 58.746 33.333 0.00 0.00 41.09 3.27
5457 5783 8.641499 AGAGAGAAAATATTCACACGAATCTC 57.359 34.615 0.00 0.00 41.09 2.75
5458 5784 9.442047 AAAGAGAGAAAATATTCACACGAATCT 57.558 29.630 0.00 0.00 41.09 2.40
5487 5813 9.396022 AGTGAATCAAGTACAAAGAGAAAAAGA 57.604 29.630 0.00 0.00 0.00 2.52
5488 5814 9.657121 GAGTGAATCAAGTACAAAGAGAAAAAG 57.343 33.333 0.00 0.00 0.00 2.27
5489 5815 9.173021 TGAGTGAATCAAGTACAAAGAGAAAAA 57.827 29.630 0.00 0.00 34.02 1.94
5490 5816 8.612619 GTGAGTGAATCAAGTACAAAGAGAAAA 58.387 33.333 0.00 0.00 40.43 2.29
5491 5817 7.987458 AGTGAGTGAATCAAGTACAAAGAGAAA 59.013 33.333 0.00 0.00 40.43 2.52
5492 5818 7.500992 AGTGAGTGAATCAAGTACAAAGAGAA 58.499 34.615 0.00 0.00 40.43 2.87
5493 5819 7.055667 AGTGAGTGAATCAAGTACAAAGAGA 57.944 36.000 0.00 0.00 40.43 3.10
5494 5820 7.721286 AAGTGAGTGAATCAAGTACAAAGAG 57.279 36.000 0.00 0.00 40.43 2.85
5495 5821 8.638873 TCTAAGTGAGTGAATCAAGTACAAAGA 58.361 33.333 0.00 0.00 40.43 2.52
5496 5822 8.818141 TCTAAGTGAGTGAATCAAGTACAAAG 57.182 34.615 0.00 0.00 40.43 2.77
5497 5823 9.208022 CATCTAAGTGAGTGAATCAAGTACAAA 57.792 33.333 0.00 0.00 40.43 2.83
5498 5824 8.367911 ACATCTAAGTGAGTGAATCAAGTACAA 58.632 33.333 0.00 0.00 40.43 2.41
5499 5825 7.814587 CACATCTAAGTGAGTGAATCAAGTACA 59.185 37.037 0.00 0.00 42.05 2.90
5500 5826 7.201478 GCACATCTAAGTGAGTGAATCAAGTAC 60.201 40.741 0.00 0.00 42.05 2.73
5501 5827 6.813649 GCACATCTAAGTGAGTGAATCAAGTA 59.186 38.462 0.00 0.00 42.05 2.24
5502 5828 5.641209 GCACATCTAAGTGAGTGAATCAAGT 59.359 40.000 0.00 0.00 42.05 3.16
5503 5829 5.640783 TGCACATCTAAGTGAGTGAATCAAG 59.359 40.000 0.00 0.00 42.05 3.02
5504 5830 5.550290 TGCACATCTAAGTGAGTGAATCAA 58.450 37.500 0.00 0.00 42.05 2.57
5505 5831 5.151297 TGCACATCTAAGTGAGTGAATCA 57.849 39.130 0.00 0.00 42.05 2.57
5506 5832 6.674694 ATTGCACATCTAAGTGAGTGAATC 57.325 37.500 0.00 0.00 42.05 2.52
5507 5833 7.826252 AGTTATTGCACATCTAAGTGAGTGAAT 59.174 33.333 0.00 0.00 42.05 2.57
5508 5834 7.161404 AGTTATTGCACATCTAAGTGAGTGAA 58.839 34.615 0.00 0.00 42.05 3.18
5509 5835 6.701340 AGTTATTGCACATCTAAGTGAGTGA 58.299 36.000 0.00 0.00 42.05 3.41
5510 5836 6.974932 AGTTATTGCACATCTAAGTGAGTG 57.025 37.500 0.00 0.00 42.05 3.51
5511 5837 8.067751 TCTAGTTATTGCACATCTAAGTGAGT 57.932 34.615 0.00 0.00 42.05 3.41
5512 5838 7.168972 GCTCTAGTTATTGCACATCTAAGTGAG 59.831 40.741 0.00 0.00 42.05 3.51
5513 5839 6.980978 GCTCTAGTTATTGCACATCTAAGTGA 59.019 38.462 0.00 0.00 42.05 3.41
5514 5840 6.758416 TGCTCTAGTTATTGCACATCTAAGTG 59.242 38.462 0.00 0.00 42.37 3.16
5515 5841 6.878317 TGCTCTAGTTATTGCACATCTAAGT 58.122 36.000 0.00 0.00 0.00 2.24
5540 5866 3.638627 TGTGTCTAGGGCACATCTAGATG 59.361 47.826 27.63 27.63 43.25 2.90
5541 5867 3.639094 GTGTGTCTAGGGCACATCTAGAT 59.361 47.826 18.92 0.00 46.66 1.98
5542 5868 3.024547 GTGTGTCTAGGGCACATCTAGA 58.975 50.000 18.92 0.00 46.66 2.43
5543 5869 2.101582 GGTGTGTCTAGGGCACATCTAG 59.898 54.545 18.92 0.00 46.66 2.43
5544 5870 2.108168 GGTGTGTCTAGGGCACATCTA 58.892 52.381 18.92 0.21 46.66 1.98
5545 5871 0.905357 GGTGTGTCTAGGGCACATCT 59.095 55.000 18.92 0.00 46.66 2.90
5546 5872 0.107654 GGGTGTGTCTAGGGCACATC 60.108 60.000 18.92 18.25 46.66 3.06
5547 5873 0.547712 AGGGTGTGTCTAGGGCACAT 60.548 55.000 18.92 5.97 46.66 3.21
5548 5874 0.115547 TAGGGTGTGTCTAGGGCACA 59.884 55.000 14.22 14.22 43.60 4.57
5549 5875 1.497161 ATAGGGTGTGTCTAGGGCAC 58.503 55.000 10.20 10.20 37.37 5.01
5550 5876 3.408157 TTATAGGGTGTGTCTAGGGCA 57.592 47.619 0.00 0.00 0.00 5.36
5551 5877 4.976540 AATTATAGGGTGTGTCTAGGGC 57.023 45.455 0.00 0.00 0.00 5.19
5552 5878 7.116736 ACAAAAATTATAGGGTGTGTCTAGGG 58.883 38.462 0.00 0.00 0.00 3.53
5553 5879 7.827236 TGACAAAAATTATAGGGTGTGTCTAGG 59.173 37.037 0.00 0.00 36.09 3.02
5554 5880 8.786826 TGACAAAAATTATAGGGTGTGTCTAG 57.213 34.615 0.00 0.00 36.09 2.43
5555 5881 9.173021 CATGACAAAAATTATAGGGTGTGTCTA 57.827 33.333 0.00 0.00 36.09 2.59
5556 5882 7.888021 TCATGACAAAAATTATAGGGTGTGTCT 59.112 33.333 0.00 0.00 36.09 3.41
5557 5883 7.968405 GTCATGACAAAAATTATAGGGTGTGTC 59.032 37.037 21.07 0.00 35.75 3.67
5558 5884 7.093945 GGTCATGACAAAAATTATAGGGTGTGT 60.094 37.037 26.47 0.00 0.00 3.72
5559 5885 7.257722 GGTCATGACAAAAATTATAGGGTGTG 58.742 38.462 26.47 0.00 0.00 3.82
5560 5886 6.379988 GGGTCATGACAAAAATTATAGGGTGT 59.620 38.462 26.47 0.00 0.00 4.16
5561 5887 6.607198 AGGGTCATGACAAAAATTATAGGGTG 59.393 38.462 26.47 0.00 0.00 4.61
5562 5888 6.741724 AGGGTCATGACAAAAATTATAGGGT 58.258 36.000 26.47 0.00 0.00 4.34
5563 5889 7.998964 AGTAGGGTCATGACAAAAATTATAGGG 59.001 37.037 26.47 0.00 0.00 3.53
5564 5890 8.840321 CAGTAGGGTCATGACAAAAATTATAGG 58.160 37.037 26.47 1.89 0.00 2.57
5565 5891 9.613428 TCAGTAGGGTCATGACAAAAATTATAG 57.387 33.333 26.47 7.00 0.00 1.31
5567 5893 9.479549 AATCAGTAGGGTCATGACAAAAATTAT 57.520 29.630 26.47 9.82 0.00 1.28
5568 5894 8.877864 AATCAGTAGGGTCATGACAAAAATTA 57.122 30.769 26.47 7.96 0.00 1.40
5569 5895 7.781324 AATCAGTAGGGTCATGACAAAAATT 57.219 32.000 26.47 12.91 0.00 1.82
5582 5908 8.164070 ACAAGAGATTAAACAAATCAGTAGGGT 58.836 33.333 1.01 0.00 45.58 4.34
5583 5909 8.567285 ACAAGAGATTAAACAAATCAGTAGGG 57.433 34.615 1.01 0.00 45.58 3.53
5784 6126 2.092323 GGGACTGAATTTCTTTCGGGG 58.908 52.381 0.00 0.00 43.85 5.73
5787 6129 5.470098 TCAGAAAGGGACTGAATTTCTTTCG 59.530 40.000 0.00 0.00 44.48 3.46
5881 6240 2.230892 CGACAAAACCGCTGCAGTA 58.769 52.632 16.64 0.00 0.00 2.74
5891 6250 5.847670 AGAGTGAGATTAAGCGACAAAAC 57.152 39.130 0.00 0.00 0.00 2.43
5948 6307 2.438434 CCCGACAACTCCATGGCC 60.438 66.667 6.96 0.00 0.00 5.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.