Multiple sequence alignment - TraesCS5D01G069300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G069300 chr5D 100.000 5305 0 0 1 5305 66752711 66758015 0.000000e+00 9797.0
1 TraesCS5D01G069300 chr5D 86.058 208 24 3 2592 2798 457776977 457777180 8.950000e-53 219.0
2 TraesCS5D01G069300 chr5D 88.525 122 14 0 3690 3811 457777203 457777324 1.190000e-31 148.0
3 TraesCS5D01G069300 chr5D 90.090 111 11 0 2683 2793 460394564 460394454 1.540000e-30 145.0
4 TraesCS5D01G069300 chr5D 75.391 256 34 15 1187 1435 457775944 457776177 4.370000e-16 97.1
5 TraesCS5D01G069300 chr5A 93.487 3639 120 44 1726 5305 57377702 57374122 0.000000e+00 5299.0
6 TraesCS5D01G069300 chr5A 91.906 1149 52 16 563 1690 57379021 57377893 0.000000e+00 1568.0
7 TraesCS5D01G069300 chr5A 90.991 111 10 0 2683 2793 580465954 580465844 3.310000e-32 150.0
8 TraesCS5D01G069300 chr5A 85.156 128 19 0 3684 3811 575658591 575658718 1.200000e-26 132.0
9 TraesCS5D01G069300 chr5A 73.789 351 52 26 1105 1435 575657410 575657740 9.400000e-18 102.0
10 TraesCS5D01G069300 chr5A 88.095 84 10 0 2670 2753 575658464 575658547 3.380000e-17 100.0
11 TraesCS5D01G069300 chr5B 95.839 2259 65 13 3055 5305 64265808 64263571 0.000000e+00 3624.0
12 TraesCS5D01G069300 chr5B 92.969 2304 60 39 563 2841 64268386 64266160 0.000000e+00 3264.0
13 TraesCS5D01G069300 chr5B 90.323 186 12 5 2891 3072 64266161 64265978 6.870000e-59 239.0
14 TraesCS5D01G069300 chr5B 85.507 207 24 4 2592 2798 559992027 559992227 1.500000e-50 211.0
15 TraesCS5D01G069300 chr5B 90.991 111 10 0 2683 2793 565929881 565929771 3.310000e-32 150.0
16 TraesCS5D01G069300 chr5B 86.885 122 16 0 3690 3811 559992256 559992377 2.580000e-28 137.0
17 TraesCS5D01G069300 chr5B 74.359 351 47 30 1105 1435 559991111 559991438 5.620000e-20 110.0
18 TraesCS5D01G069300 chr1A 76.923 299 59 6 108 400 509038306 509038600 1.530000e-35 161.0
19 TraesCS5D01G069300 chr1A 92.754 69 5 0 3741 3809 127076891 127076823 3.380000e-17 100.0
20 TraesCS5D01G069300 chr1A 75.472 212 42 7 188 393 572504293 572504086 1.570000e-15 95.3
21 TraesCS5D01G069300 chr3A 77.358 265 51 9 38 296 686941010 686941271 1.190000e-31 148.0
22 TraesCS5D01G069300 chr3A 77.928 222 43 5 91 307 634665786 634665566 3.330000e-27 134.0
23 TraesCS5D01G069300 chr2D 81.098 164 27 1 1346 1509 119839411 119839252 1.550000e-25 128.0
24 TraesCS5D01G069300 chr2D 80.000 135 22 4 110 239 32643315 32643181 1.570000e-15 95.3
25 TraesCS5D01G069300 chr7D 75.618 283 51 13 138 405 143980023 143979744 2.010000e-24 124.0
26 TraesCS5D01G069300 chr1D 92.754 69 5 0 3741 3809 116004666 116004598 3.380000e-17 100.0
27 TraesCS5D01G069300 chr1B 93.939 66 4 0 3744 3809 177837616 177837551 3.380000e-17 100.0
28 TraesCS5D01G069300 chr3D 77.838 185 23 11 3267 3449 55088402 55088234 1.220000e-16 99.0
29 TraesCS5D01G069300 chr3D 91.429 70 6 0 3741 3810 81207434 81207503 4.370000e-16 97.1
30 TraesCS5D01G069300 chr2A 79.508 122 18 6 110 225 686622751 686622871 4.400000e-11 80.5
31 TraesCS5D01G069300 chr2A 72.355 293 65 14 110 392 686299103 686299389 1.580000e-10 78.7
32 TraesCS5D01G069300 chr2A 72.355 293 66 13 110 393 686524116 686524402 1.580000e-10 78.7
33 TraesCS5D01G069300 chr7B 84.091 88 4 5 3970 4056 490337022 490337100 5.700000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G069300 chr5D 66752711 66758015 5304 False 9797.000000 9797 100.000000 1 5305 1 chr5D.!!$F1 5304
1 TraesCS5D01G069300 chr5A 57374122 57379021 4899 True 3433.500000 5299 92.696500 563 5305 2 chr5A.!!$R2 4742
2 TraesCS5D01G069300 chr5B 64263571 64268386 4815 True 2375.666667 3624 93.043667 563 5305 3 chr5B.!!$R2 4742

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
375 376 0.039617 GGATCGCACGAGATCTGAGG 60.040 60.0 0.00 0.00 44.71 3.86 F
429 430 0.249031 CGACGCTAGCCACATCATCA 60.249 55.0 9.66 0.00 0.00 3.07 F
1494 1510 0.391263 CTCTGCTCTGCATGCTCACA 60.391 55.0 20.33 10.77 38.13 3.58 F
1683 1710 0.528017 TCGCCATGATCGATCTAGCC 59.472 55.0 25.02 10.87 0.00 3.93 F
1722 1924 0.594602 TCAGTCACGGTTAGTCACGG 59.405 55.0 0.00 0.00 0.00 4.94 F
3699 4143 0.744771 GGAACTCCAGGGATGAACGC 60.745 60.0 0.00 0.00 35.64 4.84 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1953 2163 0.598158 AAAGTAAACCGTGCGAGCGA 60.598 50.000 0.00 0.0 0.00 4.93 R
1955 2165 2.394545 AAAAAGTAAACCGTGCGAGC 57.605 45.000 0.00 0.0 0.00 5.03 R
2903 3151 2.342648 GTTCCGAACAGGCCGAGT 59.657 61.111 6.38 0.0 40.77 4.18 R
3547 3988 0.885596 TTAACAACGGGAAGTGCCGG 60.886 55.000 15.96 0.0 42.39 6.13 R
3709 4153 1.064611 AGCAGATCCATCAGCTTGCTT 60.065 47.619 0.80 0.0 45.72 3.91 R
4810 5262 0.326904 TGGGATGCCTCTGTCCATCT 60.327 55.000 4.35 0.0 38.28 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
77 78 2.467566 GGTACGGAGAACACCAATGT 57.532 50.000 0.00 0.00 42.46 2.71
78 79 3.598019 GGTACGGAGAACACCAATGTA 57.402 47.619 0.00 0.00 38.45 2.29
79 80 3.929094 GGTACGGAGAACACCAATGTAA 58.071 45.455 0.00 0.00 38.45 2.41
80 81 3.681417 GGTACGGAGAACACCAATGTAAC 59.319 47.826 0.00 0.00 38.45 2.50
81 82 3.478857 ACGGAGAACACCAATGTAACA 57.521 42.857 0.00 0.00 38.45 2.41
82 83 3.811083 ACGGAGAACACCAATGTAACAA 58.189 40.909 0.00 0.00 38.45 2.83
83 84 3.562557 ACGGAGAACACCAATGTAACAAC 59.437 43.478 0.00 0.00 38.45 3.32
84 85 3.562141 CGGAGAACACCAATGTAACAACA 59.438 43.478 0.00 0.00 38.45 3.33
85 86 4.035792 CGGAGAACACCAATGTAACAACAA 59.964 41.667 0.00 0.00 38.45 2.83
86 87 5.449314 CGGAGAACACCAATGTAACAACAAA 60.449 40.000 0.00 0.00 38.45 2.83
87 88 5.746721 GGAGAACACCAATGTAACAACAAAC 59.253 40.000 0.00 0.00 38.45 2.93
88 89 6.274157 AGAACACCAATGTAACAACAAACA 57.726 33.333 0.00 0.00 38.45 2.83
89 90 6.096695 AGAACACCAATGTAACAACAAACAC 58.903 36.000 0.00 0.00 38.45 3.32
90 91 5.392767 ACACCAATGTAACAACAAACACA 57.607 34.783 0.00 0.00 37.26 3.72
91 92 5.784177 ACACCAATGTAACAACAAACACAA 58.216 33.333 0.00 0.00 37.26 3.33
92 93 5.635700 ACACCAATGTAACAACAAACACAAC 59.364 36.000 0.00 0.00 37.26 3.32
93 94 5.866633 CACCAATGTAACAACAAACACAACT 59.133 36.000 0.00 0.00 0.00 3.16
94 95 7.030165 CACCAATGTAACAACAAACACAACTA 58.970 34.615 0.00 0.00 0.00 2.24
95 96 7.008810 CACCAATGTAACAACAAACACAACTAC 59.991 37.037 0.00 0.00 0.00 2.73
96 97 7.094118 ACCAATGTAACAACAAACACAACTACT 60.094 33.333 0.00 0.00 0.00 2.57
97 98 8.399425 CCAATGTAACAACAAACACAACTACTA 58.601 33.333 0.00 0.00 0.00 1.82
98 99 9.433317 CAATGTAACAACAAACACAACTACTAG 57.567 33.333 0.00 0.00 0.00 2.57
99 100 7.542534 TGTAACAACAAACACAACTACTAGG 57.457 36.000 0.00 0.00 0.00 3.02
100 101 7.104939 TGTAACAACAAACACAACTACTAGGT 58.895 34.615 0.00 0.00 0.00 3.08
101 102 6.673154 AACAACAAACACAACTACTAGGTC 57.327 37.500 0.00 0.00 0.00 3.85
102 103 5.121105 ACAACAAACACAACTACTAGGTCC 58.879 41.667 0.00 0.00 0.00 4.46
103 104 5.120399 CAACAAACACAACTACTAGGTCCA 58.880 41.667 0.00 0.00 0.00 4.02
104 105 5.562298 ACAAACACAACTACTAGGTCCAT 57.438 39.130 0.00 0.00 0.00 3.41
105 106 5.305585 ACAAACACAACTACTAGGTCCATG 58.694 41.667 0.00 0.00 0.00 3.66
106 107 5.071250 ACAAACACAACTACTAGGTCCATGA 59.929 40.000 0.00 0.00 0.00 3.07
107 108 5.818678 AACACAACTACTAGGTCCATGAA 57.181 39.130 0.00 0.00 0.00 2.57
108 109 5.148651 ACACAACTACTAGGTCCATGAAC 57.851 43.478 0.00 0.00 0.00 3.18
109 110 4.020485 ACACAACTACTAGGTCCATGAACC 60.020 45.833 0.00 0.00 39.80 3.62
110 111 4.020573 CACAACTACTAGGTCCATGAACCA 60.021 45.833 3.09 0.00 42.12 3.67
111 112 4.020485 ACAACTACTAGGTCCATGAACCAC 60.020 45.833 3.09 0.00 42.12 4.16
112 113 3.105283 ACTACTAGGTCCATGAACCACC 58.895 50.000 3.09 0.00 42.12 4.61
113 114 2.344093 ACTAGGTCCATGAACCACCT 57.656 50.000 3.09 7.31 43.32 4.00
114 115 3.484953 ACTAGGTCCATGAACCACCTA 57.515 47.619 3.09 8.06 41.09 3.08
116 117 0.912486 AGGTCCATGAACCACCTAGC 59.088 55.000 3.09 0.00 42.12 3.42
117 118 0.462047 GGTCCATGAACCACCTAGCG 60.462 60.000 0.00 0.00 39.27 4.26
118 119 0.535335 GTCCATGAACCACCTAGCGA 59.465 55.000 0.00 0.00 0.00 4.93
119 120 1.139058 GTCCATGAACCACCTAGCGAT 59.861 52.381 0.00 0.00 0.00 4.58
120 121 1.138859 TCCATGAACCACCTAGCGATG 59.861 52.381 0.00 0.00 0.00 3.84
121 122 0.940126 CATGAACCACCTAGCGATGC 59.060 55.000 0.00 0.00 0.00 3.91
122 123 0.179045 ATGAACCACCTAGCGATGCC 60.179 55.000 0.00 0.00 0.00 4.40
123 124 1.264749 TGAACCACCTAGCGATGCCT 61.265 55.000 0.00 0.00 0.00 4.75
124 125 0.750850 GAACCACCTAGCGATGCCTA 59.249 55.000 0.00 0.00 0.00 3.93
125 126 0.464452 AACCACCTAGCGATGCCTAC 59.536 55.000 0.00 0.00 0.00 3.18
126 127 0.686441 ACCACCTAGCGATGCCTACA 60.686 55.000 0.00 0.00 0.00 2.74
127 128 0.464036 CCACCTAGCGATGCCTACAA 59.536 55.000 0.00 0.00 0.00 2.41
128 129 1.539065 CCACCTAGCGATGCCTACAAG 60.539 57.143 0.00 0.00 0.00 3.16
129 130 0.105039 ACCTAGCGATGCCTACAAGC 59.895 55.000 0.00 0.00 34.78 4.01
140 141 2.424601 TGCCTACAAGCATTTCATGAGC 59.575 45.455 0.00 0.00 38.00 4.26
141 142 2.223665 GCCTACAAGCATTTCATGAGCC 60.224 50.000 0.00 0.00 0.00 4.70
142 143 2.032550 CCTACAAGCATTTCATGAGCCG 59.967 50.000 0.00 0.00 0.00 5.52
143 144 1.825090 ACAAGCATTTCATGAGCCGA 58.175 45.000 0.00 0.00 0.00 5.54
144 145 2.161855 ACAAGCATTTCATGAGCCGAA 58.838 42.857 0.00 0.00 0.00 4.30
145 146 2.095059 ACAAGCATTTCATGAGCCGAAC 60.095 45.455 0.00 0.00 0.00 3.95
146 147 0.729116 AGCATTTCATGAGCCGAACG 59.271 50.000 0.00 0.00 0.00 3.95
147 148 0.447801 GCATTTCATGAGCCGAACGT 59.552 50.000 0.00 0.00 0.00 3.99
148 149 1.791555 GCATTTCATGAGCCGAACGTG 60.792 52.381 0.00 0.00 0.00 4.49
149 150 0.447801 ATTTCATGAGCCGAACGTGC 59.552 50.000 0.00 0.00 0.00 5.34
150 151 1.573829 TTTCATGAGCCGAACGTGCC 61.574 55.000 0.00 0.00 0.00 5.01
151 152 3.853330 CATGAGCCGAACGTGCCG 61.853 66.667 0.00 0.00 0.00 5.69
152 153 4.373116 ATGAGCCGAACGTGCCGT 62.373 61.111 9.29 0.00 43.97 5.68
155 156 4.373116 AGCCGAACGTGCCGTCAT 62.373 61.111 9.29 0.00 39.99 3.06
156 157 3.849953 GCCGAACGTGCCGTCATC 61.850 66.667 9.29 0.00 39.99 2.92
157 158 2.431771 CCGAACGTGCCGTCATCA 60.432 61.111 9.29 0.00 39.99 3.07
158 159 1.809619 CCGAACGTGCCGTCATCAT 60.810 57.895 9.29 0.00 39.99 2.45
159 160 1.358725 CCGAACGTGCCGTCATCATT 61.359 55.000 9.29 0.00 39.99 2.57
160 161 0.247262 CGAACGTGCCGTCATCATTG 60.247 55.000 0.00 0.00 39.99 2.82
161 162 0.521242 GAACGTGCCGTCATCATTGC 60.521 55.000 0.00 0.00 39.99 3.56
162 163 1.922135 AACGTGCCGTCATCATTGCC 61.922 55.000 0.00 0.00 39.99 4.52
163 164 2.800736 GTGCCGTCATCATTGCCC 59.199 61.111 0.00 0.00 0.00 5.36
164 165 2.440065 TGCCGTCATCATTGCCCC 60.440 61.111 0.00 0.00 0.00 5.80
165 166 2.124151 GCCGTCATCATTGCCCCT 60.124 61.111 0.00 0.00 0.00 4.79
166 167 2.189499 GCCGTCATCATTGCCCCTC 61.189 63.158 0.00 0.00 0.00 4.30
167 168 1.526917 CCGTCATCATTGCCCCTCC 60.527 63.158 0.00 0.00 0.00 4.30
168 169 1.528824 CGTCATCATTGCCCCTCCT 59.471 57.895 0.00 0.00 0.00 3.69
169 170 0.107017 CGTCATCATTGCCCCTCCTT 60.107 55.000 0.00 0.00 0.00 3.36
170 171 1.685148 GTCATCATTGCCCCTCCTTC 58.315 55.000 0.00 0.00 0.00 3.46
171 172 1.064463 GTCATCATTGCCCCTCCTTCA 60.064 52.381 0.00 0.00 0.00 3.02
172 173 1.064463 TCATCATTGCCCCTCCTTCAC 60.064 52.381 0.00 0.00 0.00 3.18
173 174 0.259938 ATCATTGCCCCTCCTTCACC 59.740 55.000 0.00 0.00 0.00 4.02
174 175 1.750399 CATTGCCCCTCCTTCACCG 60.750 63.158 0.00 0.00 0.00 4.94
175 176 2.983879 ATTGCCCCTCCTTCACCGG 61.984 63.158 0.00 0.00 0.00 5.28
176 177 4.649705 TGCCCCTCCTTCACCGGA 62.650 66.667 9.46 0.00 0.00 5.14
177 178 4.097361 GCCCCTCCTTCACCGGAC 62.097 72.222 9.46 0.00 0.00 4.79
178 179 3.400054 CCCCTCCTTCACCGGACC 61.400 72.222 9.46 0.00 0.00 4.46
179 180 3.771160 CCCTCCTTCACCGGACCG 61.771 72.222 9.46 6.99 0.00 4.79
180 181 2.678934 CCTCCTTCACCGGACCGA 60.679 66.667 17.49 0.00 0.00 4.69
181 182 2.572284 CTCCTTCACCGGACCGAC 59.428 66.667 17.49 0.00 0.00 4.79
182 183 2.203523 TCCTTCACCGGACCGACA 60.204 61.111 17.49 0.00 0.00 4.35
183 184 1.812686 CTCCTTCACCGGACCGACAA 61.813 60.000 17.49 3.68 0.00 3.18
184 185 1.070105 CCTTCACCGGACCGACAAA 59.930 57.895 17.49 5.07 0.00 2.83
185 186 0.321298 CCTTCACCGGACCGACAAAT 60.321 55.000 17.49 0.00 0.00 2.32
186 187 1.519408 CTTCACCGGACCGACAAATT 58.481 50.000 17.49 0.00 0.00 1.82
187 188 1.877443 CTTCACCGGACCGACAAATTT 59.123 47.619 17.49 0.00 0.00 1.82
188 189 1.970092 TCACCGGACCGACAAATTTT 58.030 45.000 17.49 0.00 0.00 1.82
189 190 3.123157 TCACCGGACCGACAAATTTTA 57.877 42.857 17.49 0.00 0.00 1.52
190 191 3.677190 TCACCGGACCGACAAATTTTAT 58.323 40.909 17.49 0.00 0.00 1.40
191 192 4.073549 TCACCGGACCGACAAATTTTATT 58.926 39.130 17.49 0.00 0.00 1.40
192 193 4.083217 TCACCGGACCGACAAATTTTATTG 60.083 41.667 17.49 0.00 36.37 1.90
193 194 3.822167 ACCGGACCGACAAATTTTATTGT 59.178 39.130 17.49 0.00 45.82 2.71
194 195 5.002516 ACCGGACCGACAAATTTTATTGTA 58.997 37.500 17.49 0.00 43.31 2.41
195 196 5.122711 ACCGGACCGACAAATTTTATTGTAG 59.877 40.000 17.49 0.00 43.31 2.74
196 197 5.122711 CCGGACCGACAAATTTTATTGTAGT 59.877 40.000 17.49 0.00 43.31 2.73
197 198 6.313411 CCGGACCGACAAATTTTATTGTAGTA 59.687 38.462 17.49 0.00 43.31 1.82
198 199 7.396419 CGGACCGACAAATTTTATTGTAGTAG 58.604 38.462 8.64 0.00 43.31 2.57
199 200 7.276218 CGGACCGACAAATTTTATTGTAGTAGA 59.724 37.037 8.64 0.00 43.31 2.59
200 201 8.385858 GGACCGACAAATTTTATTGTAGTAGAC 58.614 37.037 0.00 0.00 43.31 2.59
201 202 8.836268 ACCGACAAATTTTATTGTAGTAGACA 57.164 30.769 0.00 0.00 43.31 3.41
202 203 8.932791 ACCGACAAATTTTATTGTAGTAGACAG 58.067 33.333 0.00 0.00 43.31 3.51
203 204 8.932791 CCGACAAATTTTATTGTAGTAGACAGT 58.067 33.333 0.00 0.00 43.31 3.55
204 205 9.953825 CGACAAATTTTATTGTAGTAGACAGTC 57.046 33.333 0.00 0.00 43.31 3.51
212 213 9.909644 TTTATTGTAGTAGACAGTCAGAAAGTC 57.090 33.333 2.66 0.00 39.88 3.01
213 214 6.954487 TTGTAGTAGACAGTCAGAAAGTCA 57.046 37.500 2.66 0.00 39.88 3.41
214 215 7.526142 TTGTAGTAGACAGTCAGAAAGTCAT 57.474 36.000 2.66 0.00 39.88 3.06
215 216 7.526142 TGTAGTAGACAGTCAGAAAGTCATT 57.474 36.000 2.66 0.00 34.80 2.57
216 217 7.371159 TGTAGTAGACAGTCAGAAAGTCATTG 58.629 38.462 2.66 0.00 34.80 2.82
217 218 6.412362 AGTAGACAGTCAGAAAGTCATTGT 57.588 37.500 2.66 0.00 34.80 2.71
218 219 6.219473 AGTAGACAGTCAGAAAGTCATTGTG 58.781 40.000 2.66 0.00 34.80 3.33
219 220 3.812053 AGACAGTCAGAAAGTCATTGTGC 59.188 43.478 2.66 0.00 34.80 4.57
220 221 3.812053 GACAGTCAGAAAGTCATTGTGCT 59.188 43.478 0.00 0.00 32.50 4.40
221 222 4.960938 ACAGTCAGAAAGTCATTGTGCTA 58.039 39.130 0.00 0.00 32.50 3.49
222 223 5.368145 ACAGTCAGAAAGTCATTGTGCTAA 58.632 37.500 0.00 0.00 32.50 3.09
223 224 5.468072 ACAGTCAGAAAGTCATTGTGCTAAG 59.532 40.000 0.00 0.00 32.50 2.18
224 225 4.999950 AGTCAGAAAGTCATTGTGCTAAGG 59.000 41.667 0.00 0.00 32.50 2.69
225 226 3.753272 TCAGAAAGTCATTGTGCTAAGGC 59.247 43.478 0.00 0.00 32.50 4.35
226 227 3.084786 AGAAAGTCATTGTGCTAAGGCC 58.915 45.455 0.00 0.00 37.74 5.19
227 228 2.887151 AAGTCATTGTGCTAAGGCCT 57.113 45.000 0.00 0.00 37.74 5.19
228 229 2.409948 AGTCATTGTGCTAAGGCCTC 57.590 50.000 5.23 0.00 37.74 4.70
229 230 1.630369 AGTCATTGTGCTAAGGCCTCA 59.370 47.619 5.23 0.00 37.74 3.86
230 231 1.740025 GTCATTGTGCTAAGGCCTCAC 59.260 52.381 5.23 11.33 37.74 3.51
231 232 1.350684 TCATTGTGCTAAGGCCTCACA 59.649 47.619 19.09 19.09 38.76 3.58
233 234 1.896220 TTGTGCTAAGGCCTCACAAG 58.104 50.000 26.46 14.77 43.30 3.16
234 235 1.055849 TGTGCTAAGGCCTCACAAGA 58.944 50.000 20.34 1.09 37.73 3.02
235 236 1.270839 TGTGCTAAGGCCTCACAAGAC 60.271 52.381 20.34 7.74 37.73 3.01
236 237 0.324943 TGCTAAGGCCTCACAAGACC 59.675 55.000 5.23 0.00 37.74 3.85
237 238 0.324943 GCTAAGGCCTCACAAGACCA 59.675 55.000 5.23 0.00 0.00 4.02
238 239 1.271379 GCTAAGGCCTCACAAGACCAA 60.271 52.381 5.23 0.00 0.00 3.67
239 240 2.704572 CTAAGGCCTCACAAGACCAAG 58.295 52.381 5.23 0.00 0.00 3.61
240 241 0.846693 AAGGCCTCACAAGACCAAGT 59.153 50.000 5.23 0.00 0.00 3.16
241 242 0.109342 AGGCCTCACAAGACCAAGTG 59.891 55.000 0.00 0.00 37.10 3.16
242 243 1.518903 GGCCTCACAAGACCAAGTGC 61.519 60.000 0.00 0.00 35.76 4.40
243 244 0.819259 GCCTCACAAGACCAAGTGCA 60.819 55.000 0.00 0.00 35.76 4.57
244 245 0.947244 CCTCACAAGACCAAGTGCAC 59.053 55.000 9.40 9.40 35.76 4.57
245 246 0.947244 CTCACAAGACCAAGTGCACC 59.053 55.000 14.63 0.00 35.76 5.01
246 247 0.254462 TCACAAGACCAAGTGCACCA 59.746 50.000 14.63 0.00 35.76 4.17
247 248 0.664761 CACAAGACCAAGTGCACCAG 59.335 55.000 14.63 6.16 0.00 4.00
248 249 0.546122 ACAAGACCAAGTGCACCAGA 59.454 50.000 14.63 0.00 0.00 3.86
249 250 1.233019 CAAGACCAAGTGCACCAGAG 58.767 55.000 14.63 2.49 0.00 3.35
250 251 0.839946 AAGACCAAGTGCACCAGAGT 59.160 50.000 14.63 6.15 0.00 3.24
251 252 1.717032 AGACCAAGTGCACCAGAGTA 58.283 50.000 14.63 0.00 0.00 2.59
252 253 2.047061 AGACCAAGTGCACCAGAGTAA 58.953 47.619 14.63 0.00 0.00 2.24
253 254 2.639839 AGACCAAGTGCACCAGAGTAAT 59.360 45.455 14.63 0.00 0.00 1.89
254 255 3.838317 AGACCAAGTGCACCAGAGTAATA 59.162 43.478 14.63 0.00 0.00 0.98
255 256 4.286032 AGACCAAGTGCACCAGAGTAATAA 59.714 41.667 14.63 0.00 0.00 1.40
256 257 4.324267 ACCAAGTGCACCAGAGTAATAAC 58.676 43.478 14.63 0.00 0.00 1.89
257 258 4.202419 ACCAAGTGCACCAGAGTAATAACA 60.202 41.667 14.63 0.00 0.00 2.41
258 259 4.759693 CCAAGTGCACCAGAGTAATAACAA 59.240 41.667 14.63 0.00 0.00 2.83
259 260 5.415701 CCAAGTGCACCAGAGTAATAACAAT 59.584 40.000 14.63 0.00 0.00 2.71
260 261 6.403636 CCAAGTGCACCAGAGTAATAACAATC 60.404 42.308 14.63 0.00 0.00 2.67
261 262 5.804639 AGTGCACCAGAGTAATAACAATCA 58.195 37.500 14.63 0.00 0.00 2.57
262 263 5.643777 AGTGCACCAGAGTAATAACAATCAC 59.356 40.000 14.63 0.00 0.00 3.06
263 264 4.941263 TGCACCAGAGTAATAACAATCACC 59.059 41.667 0.00 0.00 0.00 4.02
264 265 4.034048 GCACCAGAGTAATAACAATCACCG 59.966 45.833 0.00 0.00 0.00 4.94
265 266 5.416083 CACCAGAGTAATAACAATCACCGA 58.584 41.667 0.00 0.00 0.00 4.69
266 267 6.049149 CACCAGAGTAATAACAATCACCGAT 58.951 40.000 0.00 0.00 0.00 4.18
267 268 6.018751 CACCAGAGTAATAACAATCACCGATG 60.019 42.308 0.00 0.00 0.00 3.84
268 269 6.127168 ACCAGAGTAATAACAATCACCGATGA 60.127 38.462 0.00 0.00 39.83 2.92
269 270 6.761242 CCAGAGTAATAACAATCACCGATGAA 59.239 38.462 0.00 0.00 38.69 2.57
270 271 7.042456 CCAGAGTAATAACAATCACCGATGAAG 60.042 40.741 0.00 0.00 38.69 3.02
271 272 7.706607 CAGAGTAATAACAATCACCGATGAAGA 59.293 37.037 0.00 0.00 38.69 2.87
272 273 7.707035 AGAGTAATAACAATCACCGATGAAGAC 59.293 37.037 0.00 0.00 38.69 3.01
273 274 7.327975 AGTAATAACAATCACCGATGAAGACA 58.672 34.615 0.00 0.00 38.69 3.41
274 275 6.668541 AATAACAATCACCGATGAAGACAG 57.331 37.500 0.00 0.00 38.69 3.51
275 276 3.685139 ACAATCACCGATGAAGACAGT 57.315 42.857 0.00 0.00 38.69 3.55
276 277 3.589988 ACAATCACCGATGAAGACAGTC 58.410 45.455 0.00 0.00 38.69 3.51
277 278 2.568696 ATCACCGATGAAGACAGTCG 57.431 50.000 0.00 0.00 38.69 4.18
278 279 1.244816 TCACCGATGAAGACAGTCGT 58.755 50.000 0.00 0.00 33.77 4.34
279 280 2.429478 TCACCGATGAAGACAGTCGTA 58.571 47.619 0.00 0.00 33.77 3.43
280 281 2.418976 TCACCGATGAAGACAGTCGTAG 59.581 50.000 0.00 0.00 33.77 3.51
281 282 2.418976 CACCGATGAAGACAGTCGTAGA 59.581 50.000 0.00 0.00 33.77 2.59
282 283 3.065510 CACCGATGAAGACAGTCGTAGAT 59.934 47.826 0.00 0.00 40.67 1.98
283 284 3.695060 ACCGATGAAGACAGTCGTAGATT 59.305 43.478 0.00 0.00 40.67 2.40
284 285 4.880120 ACCGATGAAGACAGTCGTAGATTA 59.120 41.667 0.00 0.00 40.67 1.75
285 286 5.007823 ACCGATGAAGACAGTCGTAGATTAG 59.992 44.000 0.00 0.00 40.67 1.73
286 287 5.236695 CCGATGAAGACAGTCGTAGATTAGA 59.763 44.000 0.00 0.00 40.67 2.10
287 288 6.238402 CCGATGAAGACAGTCGTAGATTAGAA 60.238 42.308 0.00 0.00 40.67 2.10
288 289 6.848800 CGATGAAGACAGTCGTAGATTAGAAG 59.151 42.308 0.00 0.00 40.67 2.85
289 290 6.438259 TGAAGACAGTCGTAGATTAGAAGG 57.562 41.667 0.00 0.00 40.67 3.46
290 291 6.178324 TGAAGACAGTCGTAGATTAGAAGGA 58.822 40.000 0.00 0.00 40.67 3.36
291 292 6.829298 TGAAGACAGTCGTAGATTAGAAGGAT 59.171 38.462 0.00 0.00 40.67 3.24
292 293 6.870971 AGACAGTCGTAGATTAGAAGGATC 57.129 41.667 0.00 0.00 40.67 3.36
293 294 6.358178 AGACAGTCGTAGATTAGAAGGATCA 58.642 40.000 0.00 0.00 40.67 2.92
294 295 6.829298 AGACAGTCGTAGATTAGAAGGATCAA 59.171 38.462 0.00 0.00 40.67 2.57
295 296 7.339721 AGACAGTCGTAGATTAGAAGGATCAAA 59.660 37.037 0.00 0.00 40.67 2.69
296 297 8.012957 ACAGTCGTAGATTAGAAGGATCAAAT 57.987 34.615 0.00 0.00 40.67 2.32
297 298 8.478877 ACAGTCGTAGATTAGAAGGATCAAATT 58.521 33.333 0.00 0.00 40.67 1.82
298 299 9.319143 CAGTCGTAGATTAGAAGGATCAAATTT 57.681 33.333 0.00 0.00 40.67 1.82
299 300 9.319143 AGTCGTAGATTAGAAGGATCAAATTTG 57.681 33.333 12.15 12.15 40.67 2.32
300 301 8.064814 GTCGTAGATTAGAAGGATCAAATTTGC 58.935 37.037 13.54 0.27 40.67 3.68
301 302 7.768582 TCGTAGATTAGAAGGATCAAATTTGCA 59.231 33.333 13.54 3.26 0.00 4.08
302 303 8.397906 CGTAGATTAGAAGGATCAAATTTGCAA 58.602 33.333 13.54 0.00 0.00 4.08
304 305 8.992835 AGATTAGAAGGATCAAATTTGCAAAC 57.007 30.769 15.41 0.00 0.00 2.93
305 306 8.587608 AGATTAGAAGGATCAAATTTGCAAACA 58.412 29.630 15.41 0.00 0.00 2.83
306 307 7.945033 TTAGAAGGATCAAATTTGCAAACAC 57.055 32.000 15.41 2.67 0.00 3.32
307 308 6.165700 AGAAGGATCAAATTTGCAAACACT 57.834 33.333 15.41 0.00 0.00 3.55
308 309 6.218746 AGAAGGATCAAATTTGCAAACACTC 58.781 36.000 15.41 7.20 0.00 3.51
309 310 5.534207 AGGATCAAATTTGCAAACACTCA 57.466 34.783 15.41 0.00 0.00 3.41
310 311 5.535333 AGGATCAAATTTGCAAACACTCAG 58.465 37.500 15.41 1.99 0.00 3.35
311 312 5.302568 AGGATCAAATTTGCAAACACTCAGA 59.697 36.000 15.41 7.45 0.00 3.27
312 313 5.403466 GGATCAAATTTGCAAACACTCAGAC 59.597 40.000 15.41 2.66 0.00 3.51
313 314 5.321959 TCAAATTTGCAAACACTCAGACA 57.678 34.783 15.41 0.00 0.00 3.41
314 315 5.718146 TCAAATTTGCAAACACTCAGACAA 58.282 33.333 15.41 0.00 0.00 3.18
315 316 6.162079 TCAAATTTGCAAACACTCAGACAAA 58.838 32.000 15.41 0.00 0.00 2.83
316 317 6.817641 TCAAATTTGCAAACACTCAGACAAAT 59.182 30.769 15.41 0.00 38.88 2.32
317 318 7.978414 TCAAATTTGCAAACACTCAGACAAATA 59.022 29.630 15.41 0.00 36.88 1.40
318 319 8.767085 CAAATTTGCAAACACTCAGACAAATAT 58.233 29.630 15.41 0.00 36.88 1.28
319 320 8.891671 AATTTGCAAACACTCAGACAAATATT 57.108 26.923 15.41 0.00 36.88 1.28
320 321 7.697352 TTTGCAAACACTCAGACAAATATTG 57.303 32.000 8.05 0.00 0.00 1.90
321 322 6.631971 TGCAAACACTCAGACAAATATTGA 57.368 33.333 0.00 0.00 0.00 2.57
322 323 7.036996 TGCAAACACTCAGACAAATATTGAA 57.963 32.000 0.00 0.00 0.00 2.69
323 324 7.660112 TGCAAACACTCAGACAAATATTGAAT 58.340 30.769 0.00 0.00 0.00 2.57
324 325 7.809331 TGCAAACACTCAGACAAATATTGAATC 59.191 33.333 0.00 0.00 0.00 2.52
325 326 7.274250 GCAAACACTCAGACAAATATTGAATCC 59.726 37.037 0.00 0.00 0.00 3.01
326 327 8.298854 CAAACACTCAGACAAATATTGAATCCA 58.701 33.333 0.00 0.00 0.00 3.41
327 328 8.408043 AACACTCAGACAAATATTGAATCCAA 57.592 30.769 0.00 0.00 36.61 3.53
328 329 8.408043 ACACTCAGACAAATATTGAATCCAAA 57.592 30.769 0.00 0.00 35.67 3.28
329 330 8.299570 ACACTCAGACAAATATTGAATCCAAAC 58.700 33.333 0.00 0.00 35.67 2.93
330 331 8.298854 CACTCAGACAAATATTGAATCCAAACA 58.701 33.333 0.00 0.00 35.67 2.83
331 332 8.517878 ACTCAGACAAATATTGAATCCAAACAG 58.482 33.333 0.00 0.00 35.67 3.16
332 333 7.829725 TCAGACAAATATTGAATCCAAACAGG 58.170 34.615 0.00 0.00 35.67 4.00
333 334 7.451255 TCAGACAAATATTGAATCCAAACAGGT 59.549 33.333 0.00 0.00 39.02 4.00
334 335 8.739039 CAGACAAATATTGAATCCAAACAGGTA 58.261 33.333 0.00 0.00 39.02 3.08
335 336 8.739972 AGACAAATATTGAATCCAAACAGGTAC 58.260 33.333 0.00 0.00 39.02 3.34
336 337 8.415950 ACAAATATTGAATCCAAACAGGTACA 57.584 30.769 0.00 0.00 39.02 2.90
337 338 8.303876 ACAAATATTGAATCCAAACAGGTACAC 58.696 33.333 0.00 0.00 39.02 2.90
338 339 7.404671 AATATTGAATCCAAACAGGTACACC 57.595 36.000 0.00 0.00 39.02 4.16
339 340 2.773487 TGAATCCAAACAGGTACACCG 58.227 47.619 0.00 0.00 42.08 4.94
340 341 2.369203 TGAATCCAAACAGGTACACCGA 59.631 45.455 0.00 0.00 42.08 4.69
341 342 3.181453 TGAATCCAAACAGGTACACCGAA 60.181 43.478 0.00 0.00 42.08 4.30
342 343 2.536761 TCCAAACAGGTACACCGAAG 57.463 50.000 0.00 0.00 42.08 3.79
343 344 2.040939 TCCAAACAGGTACACCGAAGA 58.959 47.619 0.00 0.00 42.08 2.87
344 345 2.140717 CCAAACAGGTACACCGAAGAC 58.859 52.381 0.00 0.00 42.08 3.01
345 346 2.140717 CAAACAGGTACACCGAAGACC 58.859 52.381 0.00 0.00 42.08 3.85
346 347 1.416243 AACAGGTACACCGAAGACCA 58.584 50.000 0.00 0.00 42.08 4.02
347 348 1.416243 ACAGGTACACCGAAGACCAA 58.584 50.000 0.00 0.00 42.08 3.67
348 349 1.069668 ACAGGTACACCGAAGACCAAC 59.930 52.381 0.00 0.00 42.08 3.77
349 350 1.069513 CAGGTACACCGAAGACCAACA 59.930 52.381 0.00 0.00 42.08 3.33
350 351 1.069668 AGGTACACCGAAGACCAACAC 59.930 52.381 0.00 0.00 42.08 3.32
351 352 1.069668 GGTACACCGAAGACCAACACT 59.930 52.381 0.00 0.00 33.16 3.55
352 353 2.132762 GTACACCGAAGACCAACACTG 58.867 52.381 0.00 0.00 0.00 3.66
353 354 0.828022 ACACCGAAGACCAACACTGA 59.172 50.000 0.00 0.00 0.00 3.41
354 355 1.217882 CACCGAAGACCAACACTGAC 58.782 55.000 0.00 0.00 0.00 3.51
355 356 1.120530 ACCGAAGACCAACACTGACT 58.879 50.000 0.00 0.00 0.00 3.41
356 357 1.202533 ACCGAAGACCAACACTGACTG 60.203 52.381 0.00 0.00 0.00 3.51
357 358 1.502231 CGAAGACCAACACTGACTGG 58.498 55.000 1.66 1.66 38.77 4.00
358 359 1.068588 CGAAGACCAACACTGACTGGA 59.931 52.381 8.40 0.00 36.49 3.86
359 360 2.289072 CGAAGACCAACACTGACTGGAT 60.289 50.000 8.40 0.00 36.49 3.41
360 361 3.330267 GAAGACCAACACTGACTGGATC 58.670 50.000 8.40 0.00 36.49 3.36
361 362 1.273606 AGACCAACACTGACTGGATCG 59.726 52.381 8.40 0.00 36.49 3.69
362 363 0.320771 ACCAACACTGACTGGATCGC 60.321 55.000 8.40 0.00 36.49 4.58
363 364 0.320683 CCAACACTGACTGGATCGCA 60.321 55.000 0.00 0.00 34.35 5.10
364 365 0.792640 CAACACTGACTGGATCGCAC 59.207 55.000 0.00 0.00 0.00 5.34
365 366 0.667487 AACACTGACTGGATCGCACG 60.667 55.000 0.00 0.00 0.00 5.34
366 367 1.212751 CACTGACTGGATCGCACGA 59.787 57.895 0.00 0.00 0.00 4.35
367 368 0.799917 CACTGACTGGATCGCACGAG 60.800 60.000 0.00 0.00 0.00 4.18
368 369 0.960861 ACTGACTGGATCGCACGAGA 60.961 55.000 0.00 0.00 0.00 4.04
369 370 0.383590 CTGACTGGATCGCACGAGAT 59.616 55.000 0.00 0.00 0.00 2.75
370 371 0.382158 TGACTGGATCGCACGAGATC 59.618 55.000 0.00 2.49 44.62 2.75
371 372 0.665835 GACTGGATCGCACGAGATCT 59.334 55.000 10.07 0.00 44.71 2.75
372 373 0.383590 ACTGGATCGCACGAGATCTG 59.616 55.000 0.00 6.72 44.71 2.90
373 374 0.665298 CTGGATCGCACGAGATCTGA 59.335 55.000 0.00 0.00 44.71 3.27
374 375 0.665298 TGGATCGCACGAGATCTGAG 59.335 55.000 0.00 0.00 44.71 3.35
375 376 0.039617 GGATCGCACGAGATCTGAGG 60.040 60.000 0.00 0.00 44.71 3.86
376 377 0.039617 GATCGCACGAGATCTGAGGG 60.040 60.000 0.00 0.00 42.68 4.30
377 378 0.466372 ATCGCACGAGATCTGAGGGA 60.466 55.000 0.00 3.88 0.00 4.20
378 379 1.098129 TCGCACGAGATCTGAGGGAG 61.098 60.000 0.00 0.00 0.00 4.30
379 380 1.098129 CGCACGAGATCTGAGGGAGA 61.098 60.000 0.00 0.00 34.25 3.71
380 381 0.383949 GCACGAGATCTGAGGGAGAC 59.616 60.000 0.00 0.00 31.75 3.36
381 382 1.756430 CACGAGATCTGAGGGAGACA 58.244 55.000 0.00 0.00 31.75 3.41
382 383 1.403679 CACGAGATCTGAGGGAGACAC 59.596 57.143 0.00 0.00 31.75 3.67
383 384 1.283613 ACGAGATCTGAGGGAGACACT 59.716 52.381 0.00 0.00 31.75 3.55
384 385 1.946768 CGAGATCTGAGGGAGACACTC 59.053 57.143 0.00 0.00 35.65 3.51
394 395 1.080434 GAGACACTCCTCCACACGC 60.080 63.158 0.00 0.00 0.00 5.34
395 396 1.806461 GAGACACTCCTCCACACGCA 61.806 60.000 0.00 0.00 0.00 5.24
396 397 1.664965 GACACTCCTCCACACGCAC 60.665 63.158 0.00 0.00 0.00 5.34
397 398 2.088674 GACACTCCTCCACACGCACT 62.089 60.000 0.00 0.00 0.00 4.40
398 399 1.069765 CACTCCTCCACACGCACTT 59.930 57.895 0.00 0.00 0.00 3.16
399 400 0.946221 CACTCCTCCACACGCACTTC 60.946 60.000 0.00 0.00 0.00 3.01
400 401 1.734477 CTCCTCCACACGCACTTCG 60.734 63.158 0.00 0.00 45.38 3.79
401 402 2.142357 CTCCTCCACACGCACTTCGA 62.142 60.000 0.00 0.00 41.67 3.71
402 403 2.022129 CCTCCACACGCACTTCGAC 61.022 63.158 0.00 0.00 41.67 4.20
403 404 2.354188 TCCACACGCACTTCGACG 60.354 61.111 0.00 0.00 41.67 5.12
404 405 2.354188 CCACACGCACTTCGACGA 60.354 61.111 0.00 0.00 41.67 4.20
405 406 2.365068 CCACACGCACTTCGACGAG 61.365 63.158 0.00 0.00 41.67 4.18
406 407 1.370051 CACACGCACTTCGACGAGA 60.370 57.895 0.00 0.00 41.67 4.04
407 408 1.370172 ACACGCACTTCGACGAGAC 60.370 57.895 0.00 0.00 41.67 3.36
408 409 2.127345 ACGCACTTCGACGAGACG 60.127 61.111 0.00 3.65 41.67 4.18
409 410 2.172659 CGCACTTCGACGAGACGA 59.827 61.111 0.00 0.00 41.67 4.20
410 411 2.138601 CGCACTTCGACGAGACGAC 61.139 63.158 0.00 0.00 41.97 4.34
411 412 2.138601 GCACTTCGACGAGACGACG 61.139 63.158 9.24 9.24 44.76 5.12
415 416 4.126390 TCGACGAGACGACGACGC 62.126 66.667 7.30 0.00 46.49 5.19
416 417 4.131581 CGACGAGACGACGACGCT 62.132 66.667 7.30 5.57 46.01 5.07
417 418 2.782045 CGACGAGACGACGACGCTA 61.782 63.158 7.30 0.00 46.01 4.26
418 419 1.013539 GACGAGACGACGACGCTAG 60.014 63.158 7.30 8.46 43.96 3.42
419 420 2.349869 CGAGACGACGACGCTAGC 60.350 66.667 7.30 4.06 43.96 3.42
420 421 2.023041 GAGACGACGACGCTAGCC 59.977 66.667 9.66 0.00 43.96 3.93
421 422 2.745100 AGACGACGACGCTAGCCA 60.745 61.111 9.66 0.00 43.96 4.75
422 423 2.576317 GACGACGACGCTAGCCAC 60.576 66.667 9.66 2.30 43.96 5.01
423 424 3.318539 GACGACGACGCTAGCCACA 62.319 63.158 9.66 0.00 43.96 4.17
424 425 2.102357 CGACGACGCTAGCCACAT 59.898 61.111 9.66 0.00 0.00 3.21
425 426 1.939785 CGACGACGCTAGCCACATC 60.940 63.158 9.66 0.41 0.00 3.06
426 427 1.138883 GACGACGCTAGCCACATCA 59.861 57.895 9.66 0.00 0.00 3.07
427 428 0.249073 GACGACGCTAGCCACATCAT 60.249 55.000 9.66 0.00 0.00 2.45
428 429 0.249073 ACGACGCTAGCCACATCATC 60.249 55.000 9.66 0.00 0.00 2.92
429 430 0.249031 CGACGCTAGCCACATCATCA 60.249 55.000 9.66 0.00 0.00 3.07
430 431 1.802508 CGACGCTAGCCACATCATCAA 60.803 52.381 9.66 0.00 0.00 2.57
431 432 1.863454 GACGCTAGCCACATCATCAAG 59.137 52.381 9.66 0.00 0.00 3.02
432 433 1.224075 CGCTAGCCACATCATCAAGG 58.776 55.000 9.66 0.00 0.00 3.61
436 437 3.179925 GCCACATCATCAAGGCTGA 57.820 52.632 0.00 0.00 43.70 4.26
437 438 1.688772 GCCACATCATCAAGGCTGAT 58.311 50.000 0.00 0.00 43.40 2.90
438 439 2.854963 GCCACATCATCAAGGCTGATA 58.145 47.619 0.00 0.00 40.49 2.15
439 440 3.216800 GCCACATCATCAAGGCTGATAA 58.783 45.455 0.00 0.00 40.49 1.75
440 441 3.825014 GCCACATCATCAAGGCTGATAAT 59.175 43.478 0.00 0.00 40.49 1.28
441 442 5.005740 GCCACATCATCAAGGCTGATAATA 58.994 41.667 0.00 0.00 40.49 0.98
442 443 5.474532 GCCACATCATCAAGGCTGATAATAA 59.525 40.000 0.00 0.00 40.49 1.40
443 444 6.152323 GCCACATCATCAAGGCTGATAATAAT 59.848 38.462 0.00 0.00 40.49 1.28
444 445 7.309621 GCCACATCATCAAGGCTGATAATAATT 60.310 37.037 0.00 0.00 40.49 1.40
445 446 8.582437 CCACATCATCAAGGCTGATAATAATTT 58.418 33.333 0.00 0.00 40.49 1.82
446 447 9.976511 CACATCATCAAGGCTGATAATAATTTT 57.023 29.630 0.00 0.00 40.49 1.82
447 448 9.976511 ACATCATCAAGGCTGATAATAATTTTG 57.023 29.630 0.00 0.00 40.49 2.44
448 449 9.976511 CATCATCAAGGCTGATAATAATTTTGT 57.023 29.630 0.00 0.00 40.49 2.83
532 533 9.750125 TTGTAGACTATTATGCACAATACTCAG 57.250 33.333 7.01 0.00 0.00 3.35
533 534 8.914011 TGTAGACTATTATGCACAATACTCAGT 58.086 33.333 7.01 0.00 0.00 3.41
534 535 9.751542 GTAGACTATTATGCACAATACTCAGTT 57.248 33.333 7.01 0.00 0.00 3.16
581 582 4.077543 GCAAACTAGCATTGCGCC 57.922 55.556 15.54 0.00 43.14 6.53
614 615 8.993121 GTATTGTGGATCATGGTAATCTAGTTG 58.007 37.037 0.00 0.00 0.00 3.16
615 616 6.560003 TGTGGATCATGGTAATCTAGTTGT 57.440 37.500 0.00 0.00 0.00 3.32
777 786 6.202226 GCCTAAACAAATGAATAGCTGTAGC 58.798 40.000 0.00 0.00 42.49 3.58
792 801 5.237419 GCTGTAGCGAACAAATCAAAAAC 57.763 39.130 0.00 0.00 37.74 2.43
801 810 6.616260 GCGAACAAATCAAAAACATTAGCAGG 60.616 38.462 0.00 0.00 0.00 4.85
876 886 2.923035 CCCACACCAACACCCTCA 59.077 61.111 0.00 0.00 0.00 3.86
945 955 9.653516 TCTCACTCTCTTTATCTATTTCCATCT 57.346 33.333 0.00 0.00 0.00 2.90
1059 1069 2.984155 CCAAGCAGCAGCAGCAGT 60.984 61.111 12.92 0.00 45.49 4.40
1062 1072 0.672711 CAAGCAGCAGCAGCAGTAGA 60.673 55.000 12.92 0.00 45.49 2.59
1454 1470 0.396060 GCATCTCCATCTCCTCCACC 59.604 60.000 0.00 0.00 0.00 4.61
1494 1510 0.391263 CTCTGCTCTGCATGCTCACA 60.391 55.000 20.33 10.77 38.13 3.58
1561 1583 3.787105 TCGTAACGCAAGCTTTCAAAAAC 59.213 39.130 0.00 0.00 45.62 2.43
1562 1584 3.544285 CGTAACGCAAGCTTTCAAAAACA 59.456 39.130 0.00 0.00 45.62 2.83
1563 1585 4.030753 CGTAACGCAAGCTTTCAAAAACAA 59.969 37.500 0.00 0.00 45.62 2.83
1564 1586 4.999751 AACGCAAGCTTTCAAAAACAAA 57.000 31.818 0.00 0.00 45.62 2.83
1565 1587 4.999751 ACGCAAGCTTTCAAAAACAAAA 57.000 31.818 0.00 0.00 45.62 2.44
1566 1588 4.707563 ACGCAAGCTTTCAAAAACAAAAC 58.292 34.783 0.00 0.00 45.62 2.43
1567 1589 4.212214 ACGCAAGCTTTCAAAAACAAAACA 59.788 33.333 0.00 0.00 45.62 2.83
1568 1590 5.142962 CGCAAGCTTTCAAAAACAAAACAA 58.857 33.333 0.00 0.00 0.00 2.83
1569 1591 5.622856 CGCAAGCTTTCAAAAACAAAACAAA 59.377 32.000 0.00 0.00 0.00 2.83
1570 1592 6.141369 CGCAAGCTTTCAAAAACAAAACAAAA 59.859 30.769 0.00 0.00 0.00 2.44
1634 1661 4.738243 GCAAAACCAACTTGATTAACGGGT 60.738 41.667 0.00 0.00 0.00 5.28
1652 1679 4.082081 ACGGGTAGTTAACGACATGAATCA 60.082 41.667 18.77 0.00 0.00 2.57
1658 1685 5.784177 AGTTAACGACATGAATCACTCTGT 58.216 37.500 0.00 0.00 0.00 3.41
1683 1710 0.528017 TCGCCATGATCGATCTAGCC 59.472 55.000 25.02 10.87 0.00 3.93
1691 1893 5.163703 CCATGATCGATCTAGCCTGTACTAC 60.164 48.000 25.02 0.00 0.00 2.73
1706 1908 4.758688 TGTACTACTCCATGCATGTTCAG 58.241 43.478 24.58 18.29 0.00 3.02
1713 1915 1.159285 CATGCATGTTCAGTCACGGT 58.841 50.000 18.91 0.00 0.00 4.83
1714 1916 1.536766 CATGCATGTTCAGTCACGGTT 59.463 47.619 18.91 0.00 0.00 4.44
1715 1917 2.535012 TGCATGTTCAGTCACGGTTA 57.465 45.000 0.00 0.00 0.00 2.85
1716 1918 2.412870 TGCATGTTCAGTCACGGTTAG 58.587 47.619 0.00 0.00 0.00 2.34
1717 1919 2.224185 TGCATGTTCAGTCACGGTTAGT 60.224 45.455 0.00 0.00 0.00 2.24
1718 1920 2.412089 GCATGTTCAGTCACGGTTAGTC 59.588 50.000 0.00 0.00 0.00 2.59
1719 1921 3.649073 CATGTTCAGTCACGGTTAGTCA 58.351 45.455 0.00 0.00 0.00 3.41
1720 1922 3.088194 TGTTCAGTCACGGTTAGTCAC 57.912 47.619 0.00 0.00 0.00 3.67
1721 1923 2.049228 GTTCAGTCACGGTTAGTCACG 58.951 52.381 0.00 0.00 0.00 4.35
1722 1924 0.594602 TCAGTCACGGTTAGTCACGG 59.405 55.000 0.00 0.00 0.00 4.94
1758 1960 2.035704 AGATCGAGCACTGATCATGGAC 59.964 50.000 2.38 0.00 43.73 4.02
1763 1968 1.827344 AGCACTGATCATGGACGAGAA 59.173 47.619 0.00 0.00 0.00 2.87
1766 1971 3.677148 GCACTGATCATGGACGAGAAAGA 60.677 47.826 0.00 0.00 0.00 2.52
1767 1972 4.498241 CACTGATCATGGACGAGAAAGAA 58.502 43.478 0.00 0.00 0.00 2.52
1768 1973 4.565962 CACTGATCATGGACGAGAAAGAAG 59.434 45.833 0.00 0.00 0.00 2.85
1769 1974 4.464244 ACTGATCATGGACGAGAAAGAAGA 59.536 41.667 0.00 0.00 0.00 2.87
1779 1984 5.163561 GGACGAGAAAGAAGAGAGATGATGT 60.164 44.000 0.00 0.00 0.00 3.06
1953 2163 4.345286 ACTGCTGCCCCTCCCTCT 62.345 66.667 0.00 0.00 0.00 3.69
2031 2242 1.204704 CTGTCCTCACGCTACAATGGA 59.795 52.381 0.00 0.00 0.00 3.41
2136 2357 3.039134 CCACCTTGTTGGGTTCGC 58.961 61.111 0.00 0.00 41.11 4.70
2525 2762 5.977725 GGATCATGAAAGAAACTCATGCATG 59.022 40.000 21.07 21.07 46.48 4.06
2589 2837 7.789027 CAAATCGTTTGGGTGGTTAATTTTAC 58.211 34.615 3.46 0.00 37.01 2.01
2830 3078 9.360901 TGCTTCTTCTCTACATATCTCTAACAT 57.639 33.333 0.00 0.00 0.00 2.71
2846 3094 9.760926 ATCTCTAACATAATACTAGATCAGCCA 57.239 33.333 0.00 0.00 0.00 4.75
2847 3095 9.760926 TCTCTAACATAATACTAGATCAGCCAT 57.239 33.333 0.00 0.00 0.00 4.40
2874 3122 9.869757 AACATTTTTCATTTATAACTAGGCCAC 57.130 29.630 5.01 0.00 0.00 5.01
2875 3123 9.030452 ACATTTTTCATTTATAACTAGGCCACA 57.970 29.630 5.01 0.00 0.00 4.17
2876 3124 9.868277 CATTTTTCATTTATAACTAGGCCACAA 57.132 29.630 5.01 0.00 0.00 3.33
2878 3126 9.921637 TTTTTCATTTATAACTAGGCCACAAAG 57.078 29.630 5.01 0.00 0.00 2.77
2879 3127 8.871629 TTTCATTTATAACTAGGCCACAAAGA 57.128 30.769 5.01 0.00 0.00 2.52
2880 3128 9.474313 TTTCATTTATAACTAGGCCACAAAGAT 57.526 29.630 5.01 0.00 0.00 2.40
2948 3196 6.942767 CGAAATTTCACACGAGCGTATATATG 59.057 38.462 17.99 0.00 0.00 1.78
2949 3197 7.358105 CGAAATTTCACACGAGCGTATATATGT 60.358 37.037 17.99 0.00 0.00 2.29
2950 3198 6.690704 ATTTCACACGAGCGTATATATGTG 57.309 37.500 3.92 4.97 39.00 3.21
3080 3518 3.996480 AGCTGTAGTGTTCCTGAACTTC 58.004 45.455 11.03 5.04 41.67 3.01
3309 3748 4.162320 ACCATATGTACACAACAGCTAGCT 59.838 41.667 12.68 12.68 42.70 3.32
3495 3936 9.665719 AACAACAATTATTGGTTTTTCTCTGTT 57.334 25.926 9.88 0.00 33.63 3.16
3496 3937 9.097257 ACAACAATTATTGGTTTTTCTCTGTTG 57.903 29.630 9.88 0.00 43.34 3.33
3497 3938 8.550376 CAACAATTATTGGTTTTTCTCTGTTGG 58.450 33.333 9.88 0.00 37.39 3.77
3498 3939 7.791029 ACAATTATTGGTTTTTCTCTGTTGGT 58.209 30.769 9.88 0.00 34.12 3.67
3547 3988 6.646636 CGTTGATTTGATACGGGACTTTATC 58.353 40.000 0.00 0.00 0.00 1.75
3579 4023 4.563976 CCCGTTGTTAACTAGACCATAACG 59.436 45.833 7.22 11.10 39.26 3.18
3607 4051 7.331026 TGCTCTGAACTAGCACTATGTATTTT 58.669 34.615 0.00 0.00 44.78 1.82
3618 4062 6.979238 AGCACTATGTATTTTCCGAGTTACTC 59.021 38.462 1.64 1.64 0.00 2.59
3625 4069 7.383687 TGTATTTTCCGAGTTACTCTTGATGT 58.616 34.615 10.83 0.00 0.00 3.06
3699 4143 0.744771 GGAACTCCAGGGATGAACGC 60.745 60.000 0.00 0.00 35.64 4.84
3709 4153 1.083489 GGATGAACGCCATGAACGAA 58.917 50.000 13.95 1.51 35.17 3.85
3900 4344 5.411781 ACTACTCTGAATCTTTGGTAAGCG 58.588 41.667 0.00 0.00 0.00 4.68
4009 4454 3.181450 GCTATTGGCCTTGGTCAGTAGAT 60.181 47.826 22.37 5.00 34.27 1.98
4010 4455 3.567478 ATTGGCCTTGGTCAGTAGATC 57.433 47.619 3.32 0.00 0.00 2.75
4011 4456 2.254152 TGGCCTTGGTCAGTAGATCT 57.746 50.000 3.32 0.00 0.00 2.75
4012 4457 2.111384 TGGCCTTGGTCAGTAGATCTC 58.889 52.381 3.32 0.00 0.00 2.75
4013 4458 1.414550 GGCCTTGGTCAGTAGATCTCC 59.585 57.143 0.00 0.00 0.00 3.71
4014 4459 1.414550 GCCTTGGTCAGTAGATCTCCC 59.585 57.143 0.00 0.00 0.00 4.30
4015 4460 2.957312 GCCTTGGTCAGTAGATCTCCCT 60.957 54.545 0.00 0.00 0.00 4.20
4047 4492 3.937706 AGTTTCAGATCAGCGGATGAAAG 59.062 43.478 13.62 0.00 42.53 2.62
4108 4555 6.624526 CGACTTTTGTTTTGATTGTGAATTGC 59.375 34.615 0.00 0.00 0.00 3.56
4114 4561 6.773080 TGTTTTGATTGTGAATTGCTTTGTG 58.227 32.000 0.00 0.00 0.00 3.33
4180 4627 0.617249 AACAGGAGCTGAGGAGAGGG 60.617 60.000 0.00 0.00 35.18 4.30
4183 4630 1.305718 GGAGCTGAGGAGAGGGTGT 60.306 63.158 0.00 0.00 0.00 4.16
4253 4702 7.244558 TCATCCCTGTATCATATTCTCTGTCT 58.755 38.462 0.00 0.00 0.00 3.41
4566 5017 3.206150 GGTGTGACTGTCAACAGAACAT 58.794 45.455 16.71 0.00 46.59 2.71
4641 5092 4.344679 TGGTGCTTCCTTTTGACATGATTT 59.655 37.500 0.00 0.00 37.07 2.17
4655 5106 8.628630 TTGACATGATTTATTCTGGTGTTGTA 57.371 30.769 0.00 0.00 0.00 2.41
4719 5171 4.392921 TGGTAGAGTAGAGATGCTTTGC 57.607 45.455 0.00 0.00 0.00 3.68
4763 5215 5.321959 ACAAATCAATGTGTGTGTCAACA 57.678 34.783 0.00 0.00 30.82 3.33
4810 5262 2.610859 GCCAACTGGGAGGGGAGA 60.611 66.667 0.00 0.00 40.01 3.71
5196 5648 3.806941 TGGTAATGATGCCAGCCTC 57.193 52.632 0.00 0.00 36.27 4.70
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 9.361315 CCGTACCGTCATTATTGATTATGAATA 57.639 33.333 0.00 0.00 32.94 1.75
39 40 8.092068 TCCGTACCGTCATTATTGATTATGAAT 58.908 33.333 0.00 0.00 32.94 2.57
40 41 7.435305 TCCGTACCGTCATTATTGATTATGAA 58.565 34.615 0.00 0.00 32.94 2.57
41 42 6.983984 TCCGTACCGTCATTATTGATTATGA 58.016 36.000 0.00 0.00 33.56 2.15
42 43 7.088272 TCTCCGTACCGTCATTATTGATTATG 58.912 38.462 0.00 0.00 33.56 1.90
43 44 7.223260 TCTCCGTACCGTCATTATTGATTAT 57.777 36.000 0.00 0.00 33.56 1.28
44 45 6.638096 TCTCCGTACCGTCATTATTGATTA 57.362 37.500 0.00 0.00 33.56 1.75
45 46 5.524971 TCTCCGTACCGTCATTATTGATT 57.475 39.130 0.00 0.00 33.56 2.57
46 47 5.163488 TGTTCTCCGTACCGTCATTATTGAT 60.163 40.000 0.00 0.00 33.56 2.57
47 48 4.158209 TGTTCTCCGTACCGTCATTATTGA 59.842 41.667 0.00 0.00 0.00 2.57
48 49 4.266976 GTGTTCTCCGTACCGTCATTATTG 59.733 45.833 0.00 0.00 0.00 1.90
49 50 4.427312 GTGTTCTCCGTACCGTCATTATT 58.573 43.478 0.00 0.00 0.00 1.40
50 51 3.181483 GGTGTTCTCCGTACCGTCATTAT 60.181 47.826 0.00 0.00 0.00 1.28
51 52 2.164219 GGTGTTCTCCGTACCGTCATTA 59.836 50.000 0.00 0.00 0.00 1.90
52 53 1.067354 GGTGTTCTCCGTACCGTCATT 60.067 52.381 0.00 0.00 0.00 2.57
53 54 0.529378 GGTGTTCTCCGTACCGTCAT 59.471 55.000 0.00 0.00 0.00 3.06
54 55 0.822944 TGGTGTTCTCCGTACCGTCA 60.823 55.000 0.00 0.00 37.29 4.35
55 56 0.314935 TTGGTGTTCTCCGTACCGTC 59.685 55.000 0.00 0.00 37.29 4.79
56 57 0.971386 ATTGGTGTTCTCCGTACCGT 59.029 50.000 0.00 0.00 37.29 4.83
57 58 1.337447 ACATTGGTGTTCTCCGTACCG 60.337 52.381 0.00 0.00 37.29 4.02
58 59 2.467566 ACATTGGTGTTCTCCGTACC 57.532 50.000 0.00 0.00 34.01 3.34
59 60 4.309099 TGTTACATTGGTGTTCTCCGTAC 58.691 43.478 0.00 0.00 39.77 3.67
60 61 4.603989 TGTTACATTGGTGTTCTCCGTA 57.396 40.909 0.00 0.00 39.77 4.02
61 62 3.478857 TGTTACATTGGTGTTCTCCGT 57.521 42.857 0.00 0.00 39.77 4.69
62 63 3.562141 TGTTGTTACATTGGTGTTCTCCG 59.438 43.478 0.00 0.00 39.77 4.63
63 64 5.508200 TTGTTGTTACATTGGTGTTCTCC 57.492 39.130 0.00 0.00 39.77 3.71
64 65 6.252655 GTGTTTGTTGTTACATTGGTGTTCTC 59.747 38.462 0.00 0.00 39.77 2.87
65 66 6.096695 GTGTTTGTTGTTACATTGGTGTTCT 58.903 36.000 0.00 0.00 39.77 3.01
66 67 5.864474 TGTGTTTGTTGTTACATTGGTGTTC 59.136 36.000 0.00 0.00 39.77 3.18
67 68 5.784177 TGTGTTTGTTGTTACATTGGTGTT 58.216 33.333 0.00 0.00 39.77 3.32
68 69 5.392767 TGTGTTTGTTGTTACATTGGTGT 57.607 34.783 0.00 0.00 42.39 4.16
69 70 5.866633 AGTTGTGTTTGTTGTTACATTGGTG 59.133 36.000 0.00 0.00 33.44 4.17
70 71 6.031751 AGTTGTGTTTGTTGTTACATTGGT 57.968 33.333 0.00 0.00 33.44 3.67
71 72 7.254852 AGTAGTTGTGTTTGTTGTTACATTGG 58.745 34.615 0.00 0.00 33.44 3.16
72 73 9.433317 CTAGTAGTTGTGTTTGTTGTTACATTG 57.567 33.333 0.00 0.00 33.44 2.82
73 74 8.617809 CCTAGTAGTTGTGTTTGTTGTTACATT 58.382 33.333 0.00 0.00 33.44 2.71
74 75 7.771826 ACCTAGTAGTTGTGTTTGTTGTTACAT 59.228 33.333 0.00 0.00 33.44 2.29
75 76 7.104939 ACCTAGTAGTTGTGTTTGTTGTTACA 58.895 34.615 0.00 0.00 0.00 2.41
76 77 7.254556 GGACCTAGTAGTTGTGTTTGTTGTTAC 60.255 40.741 0.00 0.00 0.00 2.50
77 78 6.762661 GGACCTAGTAGTTGTGTTTGTTGTTA 59.237 38.462 0.00 0.00 0.00 2.41
78 79 5.587443 GGACCTAGTAGTTGTGTTTGTTGTT 59.413 40.000 0.00 0.00 0.00 2.83
79 80 5.121105 GGACCTAGTAGTTGTGTTTGTTGT 58.879 41.667 0.00 0.00 0.00 3.32
80 81 5.120399 TGGACCTAGTAGTTGTGTTTGTTG 58.880 41.667 0.00 0.00 0.00 3.33
81 82 5.362105 TGGACCTAGTAGTTGTGTTTGTT 57.638 39.130 0.00 0.00 0.00 2.83
82 83 5.071250 TCATGGACCTAGTAGTTGTGTTTGT 59.929 40.000 0.00 0.00 0.00 2.83
83 84 5.547465 TCATGGACCTAGTAGTTGTGTTTG 58.453 41.667 0.00 0.00 0.00 2.93
84 85 5.818678 TCATGGACCTAGTAGTTGTGTTT 57.181 39.130 0.00 0.00 0.00 2.83
85 86 5.512576 GGTTCATGGACCTAGTAGTTGTGTT 60.513 44.000 16.69 0.00 36.73 3.32
86 87 4.020485 GGTTCATGGACCTAGTAGTTGTGT 60.020 45.833 16.69 0.00 36.73 3.72
87 88 4.020573 TGGTTCATGGACCTAGTAGTTGTG 60.021 45.833 24.02 0.00 40.47 3.33
88 89 4.020485 GTGGTTCATGGACCTAGTAGTTGT 60.020 45.833 24.02 0.00 40.47 3.32
89 90 4.504858 GTGGTTCATGGACCTAGTAGTTG 58.495 47.826 24.02 0.00 40.47 3.16
90 91 3.518303 GGTGGTTCATGGACCTAGTAGTT 59.482 47.826 24.02 0.00 40.47 2.24
91 92 3.105283 GGTGGTTCATGGACCTAGTAGT 58.895 50.000 24.02 0.00 40.47 2.73
92 93 3.375699 AGGTGGTTCATGGACCTAGTAG 58.624 50.000 24.02 0.00 38.38 2.57
93 94 3.484953 AGGTGGTTCATGGACCTAGTA 57.515 47.619 24.02 0.18 38.38 1.82
94 95 2.344093 AGGTGGTTCATGGACCTAGT 57.656 50.000 24.02 5.36 38.38 2.57
96 97 2.116238 GCTAGGTGGTTCATGGACCTA 58.884 52.381 24.02 16.32 40.67 3.08
97 98 0.912486 GCTAGGTGGTTCATGGACCT 59.088 55.000 24.02 16.09 42.87 3.85
98 99 0.462047 CGCTAGGTGGTTCATGGACC 60.462 60.000 17.13 17.13 40.23 4.46
99 100 0.535335 TCGCTAGGTGGTTCATGGAC 59.465 55.000 0.00 0.00 0.00 4.02
100 101 1.138859 CATCGCTAGGTGGTTCATGGA 59.861 52.381 0.00 0.00 0.00 3.41
101 102 1.586422 CATCGCTAGGTGGTTCATGG 58.414 55.000 0.00 0.00 0.00 3.66
102 103 0.940126 GCATCGCTAGGTGGTTCATG 59.060 55.000 0.00 0.00 0.00 3.07
103 104 0.179045 GGCATCGCTAGGTGGTTCAT 60.179 55.000 0.00 0.00 0.00 2.57
104 105 1.220749 GGCATCGCTAGGTGGTTCA 59.779 57.895 0.00 0.00 0.00 3.18
105 106 0.750850 TAGGCATCGCTAGGTGGTTC 59.249 55.000 0.00 0.00 0.00 3.62
106 107 0.464452 GTAGGCATCGCTAGGTGGTT 59.536 55.000 0.00 0.00 0.00 3.67
107 108 0.686441 TGTAGGCATCGCTAGGTGGT 60.686 55.000 0.00 0.00 0.00 4.16
108 109 0.464036 TTGTAGGCATCGCTAGGTGG 59.536 55.000 0.00 0.00 0.00 4.61
109 110 1.858091 CTTGTAGGCATCGCTAGGTG 58.142 55.000 0.00 0.00 0.00 4.00
110 111 0.105039 GCTTGTAGGCATCGCTAGGT 59.895 55.000 0.00 0.00 0.00 3.08
111 112 0.104855 TGCTTGTAGGCATCGCTAGG 59.895 55.000 0.00 0.00 37.29 3.02
112 113 3.667448 TGCTTGTAGGCATCGCTAG 57.333 52.632 0.00 0.00 37.29 3.42
119 120 2.424601 GCTCATGAAATGCTTGTAGGCA 59.575 45.455 0.00 0.00 46.21 4.75
120 121 2.223665 GGCTCATGAAATGCTTGTAGGC 60.224 50.000 0.00 0.00 46.21 3.93
121 122 2.032550 CGGCTCATGAAATGCTTGTAGG 59.967 50.000 0.00 0.00 46.21 3.18
122 123 2.938451 TCGGCTCATGAAATGCTTGTAG 59.062 45.455 0.00 0.00 46.21 2.74
123 124 2.984562 TCGGCTCATGAAATGCTTGTA 58.015 42.857 0.00 0.00 46.21 2.41
124 125 1.825090 TCGGCTCATGAAATGCTTGT 58.175 45.000 0.00 0.00 46.21 3.16
125 126 2.523015 GTTCGGCTCATGAAATGCTTG 58.477 47.619 0.00 0.00 46.21 4.01
126 127 1.131126 CGTTCGGCTCATGAAATGCTT 59.869 47.619 0.00 0.00 46.21 3.91
127 128 0.729116 CGTTCGGCTCATGAAATGCT 59.271 50.000 0.00 0.00 46.21 3.79
128 129 0.447801 ACGTTCGGCTCATGAAATGC 59.552 50.000 0.00 0.00 46.21 3.56
130 131 0.447801 GCACGTTCGGCTCATGAAAT 59.552 50.000 0.00 0.00 0.00 2.17
131 132 1.573829 GGCACGTTCGGCTCATGAAA 61.574 55.000 0.00 0.00 0.00 2.69
132 133 2.032634 GGCACGTTCGGCTCATGAA 61.033 57.895 0.00 0.00 0.00 2.57
133 134 2.434185 GGCACGTTCGGCTCATGA 60.434 61.111 0.00 0.00 0.00 3.07
146 147 2.774799 GGGGCAATGATGACGGCAC 61.775 63.158 0.00 0.00 34.32 5.01
147 148 2.440065 GGGGCAATGATGACGGCA 60.440 61.111 0.00 0.00 34.32 5.69
148 149 2.124151 AGGGGCAATGATGACGGC 60.124 61.111 0.00 0.00 34.32 5.68
149 150 1.526917 GGAGGGGCAATGATGACGG 60.527 63.158 0.00 0.00 34.32 4.79
150 151 0.107017 AAGGAGGGGCAATGATGACG 60.107 55.000 0.00 0.00 34.32 4.35
151 152 1.064463 TGAAGGAGGGGCAATGATGAC 60.064 52.381 0.00 0.00 0.00 3.06
152 153 1.064463 GTGAAGGAGGGGCAATGATGA 60.064 52.381 0.00 0.00 0.00 2.92
153 154 1.396653 GTGAAGGAGGGGCAATGATG 58.603 55.000 0.00 0.00 0.00 3.07
154 155 0.259938 GGTGAAGGAGGGGCAATGAT 59.740 55.000 0.00 0.00 0.00 2.45
155 156 1.691219 GGTGAAGGAGGGGCAATGA 59.309 57.895 0.00 0.00 0.00 2.57
156 157 1.750399 CGGTGAAGGAGGGGCAATG 60.750 63.158 0.00 0.00 0.00 2.82
157 158 2.677228 CGGTGAAGGAGGGGCAAT 59.323 61.111 0.00 0.00 0.00 3.56
158 159 3.646715 CCGGTGAAGGAGGGGCAA 61.647 66.667 0.00 0.00 0.00 4.52
159 160 4.649705 TCCGGTGAAGGAGGGGCA 62.650 66.667 0.00 0.00 34.92 5.36
160 161 4.097361 GTCCGGTGAAGGAGGGGC 62.097 72.222 0.00 0.00 41.68 5.80
161 162 3.400054 GGTCCGGTGAAGGAGGGG 61.400 72.222 0.00 0.00 41.68 4.79
162 163 3.771160 CGGTCCGGTGAAGGAGGG 61.771 72.222 2.34 0.00 41.68 4.30
163 164 2.678934 TCGGTCCGGTGAAGGAGG 60.679 66.667 12.29 0.00 41.68 4.30
164 165 1.812686 TTGTCGGTCCGGTGAAGGAG 61.813 60.000 12.29 0.00 41.68 3.69
165 166 1.401318 TTTGTCGGTCCGGTGAAGGA 61.401 55.000 12.29 0.00 38.11 3.36
166 167 0.321298 ATTTGTCGGTCCGGTGAAGG 60.321 55.000 12.29 0.00 0.00 3.46
167 168 1.519408 AATTTGTCGGTCCGGTGAAG 58.481 50.000 12.29 0.00 0.00 3.02
168 169 1.970092 AAATTTGTCGGTCCGGTGAA 58.030 45.000 12.29 4.08 0.00 3.18
169 170 1.970092 AAAATTTGTCGGTCCGGTGA 58.030 45.000 12.29 0.00 0.00 4.02
170 171 4.162812 CAATAAAATTTGTCGGTCCGGTG 58.837 43.478 12.29 0.00 0.00 4.94
171 172 3.822167 ACAATAAAATTTGTCGGTCCGGT 59.178 39.130 12.29 0.00 34.83 5.28
172 173 4.428615 ACAATAAAATTTGTCGGTCCGG 57.571 40.909 12.29 0.00 34.83 5.14
173 174 6.173191 ACTACAATAAAATTTGTCGGTCCG 57.827 37.500 4.39 4.39 40.25 4.79
174 175 8.385858 GTCTACTACAATAAAATTTGTCGGTCC 58.614 37.037 0.00 0.00 40.25 4.46
175 176 8.928733 TGTCTACTACAATAAAATTTGTCGGTC 58.071 33.333 0.00 0.00 40.25 4.79
176 177 8.836268 TGTCTACTACAATAAAATTTGTCGGT 57.164 30.769 0.00 0.00 40.25 4.69
177 178 8.932791 ACTGTCTACTACAATAAAATTTGTCGG 58.067 33.333 0.00 0.00 40.25 4.79
178 179 9.953825 GACTGTCTACTACAATAAAATTTGTCG 57.046 33.333 0.00 0.00 40.25 4.35
186 187 9.909644 GACTTTCTGACTGTCTACTACAATAAA 57.090 33.333 9.51 0.00 37.74 1.40
187 188 9.074576 TGACTTTCTGACTGTCTACTACAATAA 57.925 33.333 9.51 0.00 37.74 1.40
188 189 8.631480 TGACTTTCTGACTGTCTACTACAATA 57.369 34.615 9.51 0.00 37.74 1.90
189 190 7.526142 TGACTTTCTGACTGTCTACTACAAT 57.474 36.000 9.51 0.00 37.74 2.71
190 191 6.954487 TGACTTTCTGACTGTCTACTACAA 57.046 37.500 9.51 0.00 37.74 2.41
191 192 7.014326 ACAATGACTTTCTGACTGTCTACTACA 59.986 37.037 9.51 2.05 36.42 2.74
192 193 7.327275 CACAATGACTTTCTGACTGTCTACTAC 59.673 40.741 9.51 0.00 0.00 2.73
193 194 7.371159 CACAATGACTTTCTGACTGTCTACTA 58.629 38.462 9.51 0.00 0.00 1.82
194 195 6.219473 CACAATGACTTTCTGACTGTCTACT 58.781 40.000 9.51 0.00 0.00 2.57
195 196 5.107298 GCACAATGACTTTCTGACTGTCTAC 60.107 44.000 9.51 0.00 0.00 2.59
196 197 4.991056 GCACAATGACTTTCTGACTGTCTA 59.009 41.667 9.51 0.00 0.00 2.59
197 198 3.812053 GCACAATGACTTTCTGACTGTCT 59.188 43.478 9.51 0.00 0.00 3.41
198 199 3.812053 AGCACAATGACTTTCTGACTGTC 59.188 43.478 0.00 0.00 0.00 3.51
199 200 3.813443 AGCACAATGACTTTCTGACTGT 58.187 40.909 0.00 0.00 0.00 3.55
200 201 5.106791 CCTTAGCACAATGACTTTCTGACTG 60.107 44.000 0.00 0.00 0.00 3.51
201 202 4.999950 CCTTAGCACAATGACTTTCTGACT 59.000 41.667 0.00 0.00 0.00 3.41
202 203 4.378874 GCCTTAGCACAATGACTTTCTGAC 60.379 45.833 0.00 0.00 39.53 3.51
203 204 3.753272 GCCTTAGCACAATGACTTTCTGA 59.247 43.478 0.00 0.00 39.53 3.27
204 205 3.119708 GGCCTTAGCACAATGACTTTCTG 60.120 47.826 0.00 0.00 42.56 3.02
205 206 3.084786 GGCCTTAGCACAATGACTTTCT 58.915 45.455 0.00 0.00 42.56 2.52
206 207 3.084786 AGGCCTTAGCACAATGACTTTC 58.915 45.455 0.00 0.00 42.56 2.62
207 208 3.084786 GAGGCCTTAGCACAATGACTTT 58.915 45.455 6.77 0.00 42.56 2.66
208 209 2.040278 TGAGGCCTTAGCACAATGACTT 59.960 45.455 6.77 0.00 42.56 3.01
209 210 1.630369 TGAGGCCTTAGCACAATGACT 59.370 47.619 6.77 0.00 42.56 3.41
210 211 1.740025 GTGAGGCCTTAGCACAATGAC 59.260 52.381 16.21 0.00 42.56 3.06
211 212 1.350684 TGTGAGGCCTTAGCACAATGA 59.649 47.619 20.34 0.77 42.56 2.57
212 213 1.825090 TGTGAGGCCTTAGCACAATG 58.175 50.000 20.34 0.00 42.56 2.82
213 214 2.584835 TTGTGAGGCCTTAGCACAAT 57.415 45.000 26.46 0.00 44.73 2.71
214 215 1.419762 TCTTGTGAGGCCTTAGCACAA 59.580 47.619 27.61 27.61 46.64 3.33
215 216 1.055849 TCTTGTGAGGCCTTAGCACA 58.944 50.000 19.09 19.09 42.56 4.57
216 217 1.443802 GTCTTGTGAGGCCTTAGCAC 58.556 55.000 6.77 11.81 42.56 4.40
217 218 0.324943 GGTCTTGTGAGGCCTTAGCA 59.675 55.000 6.77 3.39 44.62 3.49
218 219 3.160872 GGTCTTGTGAGGCCTTAGC 57.839 57.895 6.77 0.21 44.62 3.09
224 225 0.819259 TGCACTTGGTCTTGTGAGGC 60.819 55.000 0.00 0.00 36.38 4.70
225 226 0.947244 GTGCACTTGGTCTTGTGAGG 59.053 55.000 10.32 0.00 36.38 3.86
226 227 0.947244 GGTGCACTTGGTCTTGTGAG 59.053 55.000 17.98 0.00 36.38 3.51
227 228 0.254462 TGGTGCACTTGGTCTTGTGA 59.746 50.000 17.98 0.00 36.38 3.58
228 229 0.664761 CTGGTGCACTTGGTCTTGTG 59.335 55.000 17.98 0.00 37.26 3.33
229 230 0.546122 TCTGGTGCACTTGGTCTTGT 59.454 50.000 17.98 0.00 0.00 3.16
230 231 1.233019 CTCTGGTGCACTTGGTCTTG 58.767 55.000 17.98 0.00 0.00 3.02
231 232 0.839946 ACTCTGGTGCACTTGGTCTT 59.160 50.000 17.98 0.00 0.00 3.01
232 233 1.717032 TACTCTGGTGCACTTGGTCT 58.283 50.000 17.98 0.00 0.00 3.85
233 234 2.543777 TTACTCTGGTGCACTTGGTC 57.456 50.000 17.98 0.00 0.00 4.02
234 235 4.202419 TGTTATTACTCTGGTGCACTTGGT 60.202 41.667 17.98 12.65 0.00 3.67
235 236 4.323417 TGTTATTACTCTGGTGCACTTGG 58.677 43.478 17.98 7.32 0.00 3.61
236 237 5.940192 TTGTTATTACTCTGGTGCACTTG 57.060 39.130 17.98 9.93 0.00 3.16
237 238 6.149474 GTGATTGTTATTACTCTGGTGCACTT 59.851 38.462 17.98 0.00 0.00 3.16
238 239 5.643777 GTGATTGTTATTACTCTGGTGCACT 59.356 40.000 17.98 0.00 0.00 4.40
239 240 5.163754 GGTGATTGTTATTACTCTGGTGCAC 60.164 44.000 8.80 8.80 0.00 4.57
240 241 4.941263 GGTGATTGTTATTACTCTGGTGCA 59.059 41.667 0.00 0.00 0.00 4.57
241 242 4.034048 CGGTGATTGTTATTACTCTGGTGC 59.966 45.833 0.00 0.00 0.00 5.01
242 243 5.416083 TCGGTGATTGTTATTACTCTGGTG 58.584 41.667 0.00 0.00 0.00 4.17
243 244 5.670792 TCGGTGATTGTTATTACTCTGGT 57.329 39.130 0.00 0.00 0.00 4.00
244 245 6.280643 TCATCGGTGATTGTTATTACTCTGG 58.719 40.000 0.00 0.00 0.00 3.86
245 246 7.706607 TCTTCATCGGTGATTGTTATTACTCTG 59.293 37.037 0.00 0.00 33.56 3.35
246 247 7.707035 GTCTTCATCGGTGATTGTTATTACTCT 59.293 37.037 0.00 0.00 33.56 3.24
247 248 7.491372 TGTCTTCATCGGTGATTGTTATTACTC 59.509 37.037 0.00 0.00 33.56 2.59
248 249 7.327975 TGTCTTCATCGGTGATTGTTATTACT 58.672 34.615 0.00 0.00 33.56 2.24
249 250 7.277981 ACTGTCTTCATCGGTGATTGTTATTAC 59.722 37.037 0.00 0.00 33.56 1.89
250 251 7.327975 ACTGTCTTCATCGGTGATTGTTATTA 58.672 34.615 0.00 0.00 33.56 0.98
251 252 6.173339 ACTGTCTTCATCGGTGATTGTTATT 58.827 36.000 0.00 0.00 33.56 1.40
252 253 5.734720 ACTGTCTTCATCGGTGATTGTTAT 58.265 37.500 0.00 0.00 33.56 1.89
253 254 5.147330 ACTGTCTTCATCGGTGATTGTTA 57.853 39.130 0.00 0.00 33.56 2.41
254 255 3.997021 GACTGTCTTCATCGGTGATTGTT 59.003 43.478 0.00 0.00 33.56 2.83
255 256 3.589988 GACTGTCTTCATCGGTGATTGT 58.410 45.455 0.00 0.00 33.56 2.71
256 257 2.600420 CGACTGTCTTCATCGGTGATTG 59.400 50.000 0.00 0.00 33.56 2.67
257 258 2.231478 ACGACTGTCTTCATCGGTGATT 59.769 45.455 0.00 0.00 40.16 2.57
258 259 1.819288 ACGACTGTCTTCATCGGTGAT 59.181 47.619 0.00 0.00 40.16 3.06
259 260 1.244816 ACGACTGTCTTCATCGGTGA 58.755 50.000 6.21 0.00 40.16 4.02
260 261 2.418976 TCTACGACTGTCTTCATCGGTG 59.581 50.000 6.21 0.00 40.16 4.94
261 262 2.708051 TCTACGACTGTCTTCATCGGT 58.292 47.619 6.21 0.00 40.16 4.69
262 263 3.972950 ATCTACGACTGTCTTCATCGG 57.027 47.619 6.21 0.00 40.16 4.18
263 264 6.288426 TCTAATCTACGACTGTCTTCATCG 57.712 41.667 6.21 0.00 41.60 3.84
264 265 7.012515 TCCTTCTAATCTACGACTGTCTTCATC 59.987 40.741 6.21 0.00 0.00 2.92
265 266 6.829298 TCCTTCTAATCTACGACTGTCTTCAT 59.171 38.462 6.21 0.00 0.00 2.57
266 267 6.178324 TCCTTCTAATCTACGACTGTCTTCA 58.822 40.000 6.21 0.00 0.00 3.02
267 268 6.680874 TCCTTCTAATCTACGACTGTCTTC 57.319 41.667 6.21 0.00 0.00 2.87
268 269 6.829298 TGATCCTTCTAATCTACGACTGTCTT 59.171 38.462 6.21 0.00 0.00 3.01
269 270 6.358178 TGATCCTTCTAATCTACGACTGTCT 58.642 40.000 6.21 0.00 0.00 3.41
270 271 6.621316 TGATCCTTCTAATCTACGACTGTC 57.379 41.667 0.00 0.00 0.00 3.51
271 272 7.406031 TTTGATCCTTCTAATCTACGACTGT 57.594 36.000 0.00 0.00 0.00 3.55
272 273 8.879342 AATTTGATCCTTCTAATCTACGACTG 57.121 34.615 0.00 0.00 0.00 3.51
273 274 9.319143 CAAATTTGATCCTTCTAATCTACGACT 57.681 33.333 13.08 0.00 0.00 4.18
274 275 8.064814 GCAAATTTGATCCTTCTAATCTACGAC 58.935 37.037 22.31 0.00 0.00 4.34
275 276 7.768582 TGCAAATTTGATCCTTCTAATCTACGA 59.231 33.333 22.31 0.00 0.00 3.43
276 277 7.919690 TGCAAATTTGATCCTTCTAATCTACG 58.080 34.615 22.31 0.00 0.00 3.51
279 280 8.587608 TGTTTGCAAATTTGATCCTTCTAATCT 58.412 29.630 22.31 0.00 0.00 2.40
280 281 8.650714 GTGTTTGCAAATTTGATCCTTCTAATC 58.349 33.333 22.31 0.05 0.00 1.75
281 282 8.370182 AGTGTTTGCAAATTTGATCCTTCTAAT 58.630 29.630 22.31 0.00 0.00 1.73
282 283 7.725251 AGTGTTTGCAAATTTGATCCTTCTAA 58.275 30.769 22.31 3.56 0.00 2.10
283 284 7.014134 TGAGTGTTTGCAAATTTGATCCTTCTA 59.986 33.333 22.31 0.00 0.00 2.10
284 285 6.165700 AGTGTTTGCAAATTTGATCCTTCT 57.834 33.333 22.31 9.38 0.00 2.85
285 286 5.984926 TGAGTGTTTGCAAATTTGATCCTTC 59.015 36.000 22.31 9.71 0.00 3.46
286 287 5.916318 TGAGTGTTTGCAAATTTGATCCTT 58.084 33.333 22.31 0.50 0.00 3.36
287 288 5.302568 TCTGAGTGTTTGCAAATTTGATCCT 59.697 36.000 22.31 7.51 0.00 3.24
288 289 5.403466 GTCTGAGTGTTTGCAAATTTGATCC 59.597 40.000 22.31 4.90 0.00 3.36
289 290 5.978919 TGTCTGAGTGTTTGCAAATTTGATC 59.021 36.000 22.31 9.93 0.00 2.92
290 291 5.904941 TGTCTGAGTGTTTGCAAATTTGAT 58.095 33.333 22.31 0.09 0.00 2.57
291 292 5.321959 TGTCTGAGTGTTTGCAAATTTGA 57.678 34.783 22.31 4.41 0.00 2.69
292 293 6.406093 TTTGTCTGAGTGTTTGCAAATTTG 57.594 33.333 16.21 14.03 0.00 2.32
293 294 8.891671 ATATTTGTCTGAGTGTTTGCAAATTT 57.108 26.923 16.21 3.94 37.59 1.82
294 295 8.767085 CAATATTTGTCTGAGTGTTTGCAAATT 58.233 29.630 16.21 4.32 37.59 1.82
295 296 8.143193 TCAATATTTGTCTGAGTGTTTGCAAAT 58.857 29.630 16.21 0.00 39.13 2.32
296 297 7.487484 TCAATATTTGTCTGAGTGTTTGCAAA 58.513 30.769 8.05 8.05 0.00 3.68
297 298 7.036996 TCAATATTTGTCTGAGTGTTTGCAA 57.963 32.000 0.00 0.00 0.00 4.08
298 299 6.631971 TCAATATTTGTCTGAGTGTTTGCA 57.368 33.333 0.00 0.00 0.00 4.08
299 300 7.274250 GGATTCAATATTTGTCTGAGTGTTTGC 59.726 37.037 0.00 0.00 0.00 3.68
300 301 8.298854 TGGATTCAATATTTGTCTGAGTGTTTG 58.701 33.333 0.00 0.00 0.00 2.93
301 302 8.408043 TGGATTCAATATTTGTCTGAGTGTTT 57.592 30.769 0.00 0.00 0.00 2.83
302 303 8.408043 TTGGATTCAATATTTGTCTGAGTGTT 57.592 30.769 0.00 0.00 0.00 3.32
303 304 8.299570 GTTTGGATTCAATATTTGTCTGAGTGT 58.700 33.333 0.00 0.00 32.28 3.55
304 305 8.298854 TGTTTGGATTCAATATTTGTCTGAGTG 58.701 33.333 0.00 0.00 32.28 3.51
305 306 8.408043 TGTTTGGATTCAATATTTGTCTGAGT 57.592 30.769 0.00 0.00 32.28 3.41
306 307 7.972277 CCTGTTTGGATTCAATATTTGTCTGAG 59.028 37.037 0.00 0.00 38.35 3.35
307 308 7.451255 ACCTGTTTGGATTCAATATTTGTCTGA 59.549 33.333 0.00 0.00 39.71 3.27
308 309 7.605449 ACCTGTTTGGATTCAATATTTGTCTG 58.395 34.615 0.00 0.00 39.71 3.51
309 310 7.781324 ACCTGTTTGGATTCAATATTTGTCT 57.219 32.000 0.00 0.00 39.71 3.41
310 311 8.519526 TGTACCTGTTTGGATTCAATATTTGTC 58.480 33.333 0.00 0.00 39.71 3.18
311 312 8.303876 GTGTACCTGTTTGGATTCAATATTTGT 58.696 33.333 0.00 0.00 39.71 2.83
312 313 7.759433 GGTGTACCTGTTTGGATTCAATATTTG 59.241 37.037 0.00 0.00 39.71 2.32
313 314 7.362574 CGGTGTACCTGTTTGGATTCAATATTT 60.363 37.037 0.00 0.00 39.71 1.40
314 315 6.094881 CGGTGTACCTGTTTGGATTCAATATT 59.905 38.462 0.00 0.00 39.71 1.28
315 316 5.588648 CGGTGTACCTGTTTGGATTCAATAT 59.411 40.000 0.00 0.00 39.71 1.28
316 317 4.938832 CGGTGTACCTGTTTGGATTCAATA 59.061 41.667 0.00 0.00 39.71 1.90
317 318 3.756434 CGGTGTACCTGTTTGGATTCAAT 59.244 43.478 0.00 0.00 39.71 2.57
318 319 3.142951 CGGTGTACCTGTTTGGATTCAA 58.857 45.455 0.00 0.00 39.71 2.69
319 320 2.369203 TCGGTGTACCTGTTTGGATTCA 59.631 45.455 0.00 0.00 39.71 2.57
320 321 3.048337 TCGGTGTACCTGTTTGGATTC 57.952 47.619 0.00 0.00 39.71 2.52
321 322 3.071892 TCTTCGGTGTACCTGTTTGGATT 59.928 43.478 0.00 0.00 39.71 3.01
322 323 2.635915 TCTTCGGTGTACCTGTTTGGAT 59.364 45.455 0.00 0.00 39.71 3.41
323 324 2.040939 TCTTCGGTGTACCTGTTTGGA 58.959 47.619 0.00 0.00 39.71 3.53
324 325 2.140717 GTCTTCGGTGTACCTGTTTGG 58.859 52.381 0.00 0.00 42.93 3.28
325 326 2.140717 GGTCTTCGGTGTACCTGTTTG 58.859 52.381 0.00 0.00 0.00 2.93
326 327 1.764134 TGGTCTTCGGTGTACCTGTTT 59.236 47.619 0.00 0.00 34.23 2.83
327 328 1.416243 TGGTCTTCGGTGTACCTGTT 58.584 50.000 0.00 0.00 34.23 3.16
328 329 1.069668 GTTGGTCTTCGGTGTACCTGT 59.930 52.381 0.00 0.00 34.23 4.00
329 330 1.069513 TGTTGGTCTTCGGTGTACCTG 59.930 52.381 0.00 0.00 34.23 4.00
330 331 1.069668 GTGTTGGTCTTCGGTGTACCT 59.930 52.381 0.00 0.00 34.23 3.08
331 332 1.069668 AGTGTTGGTCTTCGGTGTACC 59.930 52.381 0.00 0.00 0.00 3.34
332 333 2.132762 CAGTGTTGGTCTTCGGTGTAC 58.867 52.381 0.00 0.00 0.00 2.90
333 334 2.033372 TCAGTGTTGGTCTTCGGTGTA 58.967 47.619 0.00 0.00 0.00 2.90
334 335 0.828022 TCAGTGTTGGTCTTCGGTGT 59.172 50.000 0.00 0.00 0.00 4.16
335 336 1.202533 AGTCAGTGTTGGTCTTCGGTG 60.203 52.381 0.00 0.00 0.00 4.94
336 337 1.120530 AGTCAGTGTTGGTCTTCGGT 58.879 50.000 0.00 0.00 0.00 4.69
337 338 1.502231 CAGTCAGTGTTGGTCTTCGG 58.498 55.000 0.00 0.00 0.00 4.30
338 339 1.068588 TCCAGTCAGTGTTGGTCTTCG 59.931 52.381 13.60 0.00 35.89 3.79
339 340 2.910688 TCCAGTCAGTGTTGGTCTTC 57.089 50.000 13.60 0.00 35.89 2.87
340 341 2.289072 CGATCCAGTCAGTGTTGGTCTT 60.289 50.000 13.60 3.87 35.89 3.01
341 342 1.273606 CGATCCAGTCAGTGTTGGTCT 59.726 52.381 13.60 5.59 35.89 3.85
342 343 1.714794 CGATCCAGTCAGTGTTGGTC 58.285 55.000 13.60 10.41 35.89 4.02
343 344 0.320771 GCGATCCAGTCAGTGTTGGT 60.321 55.000 13.60 4.61 35.89 3.67
344 345 0.320683 TGCGATCCAGTCAGTGTTGG 60.321 55.000 9.34 9.34 35.74 3.77
345 346 0.792640 GTGCGATCCAGTCAGTGTTG 59.207 55.000 0.00 0.00 0.00 3.33
346 347 0.667487 CGTGCGATCCAGTCAGTGTT 60.667 55.000 0.00 0.00 0.00 3.32
347 348 1.080501 CGTGCGATCCAGTCAGTGT 60.081 57.895 0.00 0.00 0.00 3.55
348 349 0.799917 CTCGTGCGATCCAGTCAGTG 60.800 60.000 0.00 0.00 0.00 3.66
349 350 0.960861 TCTCGTGCGATCCAGTCAGT 60.961 55.000 0.00 0.00 0.00 3.41
350 351 0.383590 ATCTCGTGCGATCCAGTCAG 59.616 55.000 0.00 0.00 0.00 3.51
351 352 0.382158 GATCTCGTGCGATCCAGTCA 59.618 55.000 0.00 0.00 34.98 3.41
352 353 0.665835 AGATCTCGTGCGATCCAGTC 59.334 55.000 0.00 0.00 40.50 3.51
353 354 0.383590 CAGATCTCGTGCGATCCAGT 59.616 55.000 0.00 0.00 40.50 4.00
354 355 0.665298 TCAGATCTCGTGCGATCCAG 59.335 55.000 0.00 3.63 40.50 3.86
355 356 0.665298 CTCAGATCTCGTGCGATCCA 59.335 55.000 0.00 0.00 40.50 3.41
356 357 0.039617 CCTCAGATCTCGTGCGATCC 60.040 60.000 0.00 0.00 40.50 3.36
357 358 0.039617 CCCTCAGATCTCGTGCGATC 60.040 60.000 0.00 0.00 40.04 3.69
358 359 0.466372 TCCCTCAGATCTCGTGCGAT 60.466 55.000 0.00 0.00 0.00 4.58
359 360 1.077716 TCCCTCAGATCTCGTGCGA 60.078 57.895 0.00 0.00 0.00 5.10
360 361 1.098129 TCTCCCTCAGATCTCGTGCG 61.098 60.000 0.00 0.00 0.00 5.34
361 362 0.383949 GTCTCCCTCAGATCTCGTGC 59.616 60.000 0.00 0.00 32.08 5.34
362 363 1.403679 GTGTCTCCCTCAGATCTCGTG 59.596 57.143 0.00 0.00 32.08 4.35
363 364 1.283613 AGTGTCTCCCTCAGATCTCGT 59.716 52.381 0.00 0.00 32.08 4.18
364 365 1.946768 GAGTGTCTCCCTCAGATCTCG 59.053 57.143 0.00 0.00 32.08 4.04
365 366 2.306847 GGAGTGTCTCCCTCAGATCTC 58.693 57.143 4.60 0.00 44.36 2.75
366 367 2.452600 GGAGTGTCTCCCTCAGATCT 57.547 55.000 4.60 0.00 44.36 2.75
376 377 1.080434 GCGTGTGGAGGAGTGTCTC 60.080 63.158 0.00 0.00 0.00 3.36
377 378 1.832608 TGCGTGTGGAGGAGTGTCT 60.833 57.895 0.00 0.00 0.00 3.41
378 379 1.664965 GTGCGTGTGGAGGAGTGTC 60.665 63.158 0.00 0.00 0.00 3.67
379 380 1.686325 AAGTGCGTGTGGAGGAGTGT 61.686 55.000 0.00 0.00 0.00 3.55
380 381 0.946221 GAAGTGCGTGTGGAGGAGTG 60.946 60.000 0.00 0.00 0.00 3.51
381 382 1.367840 GAAGTGCGTGTGGAGGAGT 59.632 57.895 0.00 0.00 0.00 3.85
382 383 1.734477 CGAAGTGCGTGTGGAGGAG 60.734 63.158 0.00 0.00 34.64 3.69
383 384 2.197605 TCGAAGTGCGTGTGGAGGA 61.198 57.895 0.00 0.00 41.80 3.71
384 385 2.022129 GTCGAAGTGCGTGTGGAGG 61.022 63.158 0.00 0.00 41.80 4.30
385 386 2.365068 CGTCGAAGTGCGTGTGGAG 61.365 63.158 0.00 0.00 41.80 3.86
386 387 2.354188 CGTCGAAGTGCGTGTGGA 60.354 61.111 0.00 0.00 41.80 4.02
387 388 2.354188 TCGTCGAAGTGCGTGTGG 60.354 61.111 0.00 0.00 41.80 4.17
388 389 1.370051 TCTCGTCGAAGTGCGTGTG 60.370 57.895 0.00 0.00 41.80 3.82
389 390 1.370172 GTCTCGTCGAAGTGCGTGT 60.370 57.895 0.00 0.00 41.80 4.49
390 391 2.418333 CGTCTCGTCGAAGTGCGTG 61.418 63.158 0.00 0.00 41.80 5.34
391 392 2.127345 CGTCTCGTCGAAGTGCGT 60.127 61.111 0.00 0.00 41.80 5.24
392 393 2.138601 GTCGTCTCGTCGAAGTGCG 61.139 63.158 0.00 4.85 41.47 5.34
393 394 2.138601 CGTCGTCTCGTCGAAGTGC 61.139 63.158 0.00 0.00 40.28 4.40
394 395 0.784978 GTCGTCGTCTCGTCGAAGTG 60.785 60.000 11.93 0.00 46.38 3.16
395 396 1.490692 GTCGTCGTCTCGTCGAAGT 59.509 57.895 11.93 0.00 46.38 3.01
396 397 1.574639 CGTCGTCGTCTCGTCGAAG 60.575 63.158 11.93 10.55 46.38 3.79
397 398 2.467223 CGTCGTCGTCTCGTCGAA 59.533 61.111 11.93 0.00 46.38 3.71
398 399 4.126390 GCGTCGTCGTCTCGTCGA 62.126 66.667 16.07 7.28 43.56 4.20
399 400 2.647446 CTAGCGTCGTCGTCTCGTCG 62.647 65.000 3.66 10.63 42.71 5.12
400 401 1.013539 CTAGCGTCGTCGTCTCGTC 60.014 63.158 3.66 0.00 39.49 4.20
401 402 3.079417 CTAGCGTCGTCGTCTCGT 58.921 61.111 3.66 0.00 39.49 4.18
402 403 2.349869 GCTAGCGTCGTCGTCTCG 60.350 66.667 0.00 0.00 39.49 4.04
403 404 2.023041 GGCTAGCGTCGTCGTCTC 59.977 66.667 9.00 0.00 39.49 3.36
404 405 2.745100 TGGCTAGCGTCGTCGTCT 60.745 61.111 9.00 4.32 39.49 4.18
405 406 2.576317 GTGGCTAGCGTCGTCGTC 60.576 66.667 9.00 0.00 39.49 4.20
406 407 2.594119 GATGTGGCTAGCGTCGTCGT 62.594 60.000 9.00 0.00 39.49 4.34
407 408 1.939785 GATGTGGCTAGCGTCGTCG 60.940 63.158 9.00 0.00 40.37 5.12
408 409 0.249073 ATGATGTGGCTAGCGTCGTC 60.249 55.000 9.00 14.42 0.00 4.20
409 410 0.249073 GATGATGTGGCTAGCGTCGT 60.249 55.000 9.00 5.42 0.00 4.34
410 411 0.249031 TGATGATGTGGCTAGCGTCG 60.249 55.000 9.00 0.00 0.00 5.12
411 412 1.863454 CTTGATGATGTGGCTAGCGTC 59.137 52.381 9.00 4.73 0.00 5.19
412 413 1.473965 CCTTGATGATGTGGCTAGCGT 60.474 52.381 9.00 0.00 0.00 5.07
413 414 1.224075 CCTTGATGATGTGGCTAGCG 58.776 55.000 9.00 0.00 0.00 4.26
414 415 0.950116 GCCTTGATGATGTGGCTAGC 59.050 55.000 6.04 6.04 41.92 3.42
418 419 1.688772 ATCAGCCTTGATGATGTGGC 58.311 50.000 0.00 0.00 42.41 5.01
419 420 7.698506 ATTATTATCAGCCTTGATGATGTGG 57.301 36.000 5.17 0.00 43.76 4.17
420 421 9.976511 AAAATTATTATCAGCCTTGATGATGTG 57.023 29.630 5.17 0.00 43.76 3.21
421 422 9.976511 CAAAATTATTATCAGCCTTGATGATGT 57.023 29.630 5.17 0.00 43.76 3.06
422 423 9.976511 ACAAAATTATTATCAGCCTTGATGATG 57.023 29.630 5.17 0.00 43.76 3.07
506 507 9.750125 CTGAGTATTGTGCATAATAGTCTACAA 57.250 33.333 33.12 21.10 40.87 2.41
507 508 8.914011 ACTGAGTATTGTGCATAATAGTCTACA 58.086 33.333 33.12 21.73 40.87 2.74
508 509 9.751542 AACTGAGTATTGTGCATAATAGTCTAC 57.248 33.333 33.12 19.30 40.87 2.59
539 540 8.400186 GCTACTCCGGCAAAATAAAATTAACTA 58.600 33.333 0.00 0.00 0.00 2.24
540 541 7.094118 TGCTACTCCGGCAAAATAAAATTAACT 60.094 33.333 0.00 0.00 36.71 2.24
541 542 7.030768 TGCTACTCCGGCAAAATAAAATTAAC 58.969 34.615 0.00 0.00 36.71 2.01
542 543 7.159322 TGCTACTCCGGCAAAATAAAATTAA 57.841 32.000 0.00 0.00 36.71 1.40
543 544 6.761099 TGCTACTCCGGCAAAATAAAATTA 57.239 33.333 0.00 0.00 36.71 1.40
544 545 5.652994 TGCTACTCCGGCAAAATAAAATT 57.347 34.783 0.00 0.00 36.71 1.82
545 546 5.652994 TTGCTACTCCGGCAAAATAAAAT 57.347 34.783 0.00 0.00 45.05 1.82
553 554 1.674817 GCTAGTTTGCTACTCCGGCAA 60.675 52.381 0.00 0.00 46.12 4.52
554 555 0.108329 GCTAGTTTGCTACTCCGGCA 60.108 55.000 0.00 0.00 38.33 5.69
555 556 0.108329 TGCTAGTTTGCTACTCCGGC 60.108 55.000 0.00 0.00 38.33 6.13
556 557 2.604046 ATGCTAGTTTGCTACTCCGG 57.396 50.000 0.00 0.00 38.33 5.14
557 558 2.030946 GCAATGCTAGTTTGCTACTCCG 59.969 50.000 19.25 0.00 44.71 4.63
558 559 2.030946 CGCAATGCTAGTTTGCTACTCC 59.969 50.000 22.04 2.60 45.67 3.85
559 560 2.537730 GCGCAATGCTAGTTTGCTACTC 60.538 50.000 22.04 10.57 45.67 2.59
560 561 1.398390 GCGCAATGCTAGTTTGCTACT 59.602 47.619 22.04 0.00 45.67 2.57
561 562 1.531883 GGCGCAATGCTAGTTTGCTAC 60.532 52.381 22.04 16.28 45.67 3.58
581 582 3.304861 CCATGATCCACAATACAATGCCG 60.305 47.826 0.00 0.00 0.00 5.69
777 786 6.128849 CCCTGCTAATGTTTTTGATTTGTTCG 60.129 38.462 0.00 0.00 0.00 3.95
876 886 4.038402 GCAGGCAGAAATAATAATGGCAGT 59.962 41.667 0.00 0.00 40.42 4.40
907 917 2.771943 GAGAGTGAGAGAGGAGAGGAGA 59.228 54.545 0.00 0.00 0.00 3.71
909 919 2.845659 AGAGAGTGAGAGAGGAGAGGA 58.154 52.381 0.00 0.00 0.00 3.71
910 920 3.652057 AAGAGAGTGAGAGAGGAGAGG 57.348 52.381 0.00 0.00 0.00 3.69
911 921 6.595682 AGATAAAGAGAGTGAGAGAGGAGAG 58.404 44.000 0.00 0.00 0.00 3.20
912 922 6.575244 AGATAAAGAGAGTGAGAGAGGAGA 57.425 41.667 0.00 0.00 0.00 3.71
1059 1069 6.349777 CCTCGCTTCTTCTTCTTCTTCTTCTA 60.350 42.308 0.00 0.00 0.00 2.10
1062 1072 4.282195 TCCTCGCTTCTTCTTCTTCTTCTT 59.718 41.667 0.00 0.00 0.00 2.52
1101 1111 2.124736 GGTCCGCTGCCATTGCTA 60.125 61.111 0.00 0.00 38.71 3.49
1102 1112 4.039092 AGGTCCGCTGCCATTGCT 62.039 61.111 0.00 0.00 38.71 3.91
1103 1113 3.818787 CAGGTCCGCTGCCATTGC 61.819 66.667 0.00 0.00 38.26 3.56
1104 1114 3.136123 CCAGGTCCGCTGCCATTG 61.136 66.667 0.00 0.00 0.00 2.82
1454 1470 0.755686 GTAGCAGAGAGATGGGTGGG 59.244 60.000 0.00 0.00 0.00 4.61
1569 1591 3.574614 CTCGCGTTTTGATGGGATTTTT 58.425 40.909 5.77 0.00 0.00 1.94
1570 1592 2.671070 GCTCGCGTTTTGATGGGATTTT 60.671 45.455 5.77 0.00 0.00 1.82
1634 1661 6.920817 ACAGAGTGATTCATGTCGTTAACTA 58.079 36.000 3.71 0.00 0.00 2.24
1643 1670 5.167121 CGAGAGAAACAGAGTGATTCATGT 58.833 41.667 0.00 0.00 32.41 3.21
1652 1679 1.895798 TCATGGCGAGAGAAACAGAGT 59.104 47.619 0.00 0.00 0.00 3.24
1658 1685 2.625314 AGATCGATCATGGCGAGAGAAA 59.375 45.455 26.47 0.00 41.49 2.52
1683 1710 4.758688 TGAACATGCATGGAGTAGTACAG 58.241 43.478 29.41 1.09 0.00 2.74
1691 1893 1.395954 CGTGACTGAACATGCATGGAG 59.604 52.381 29.41 22.26 0.00 3.86
1706 1908 1.735559 GGCCGTGACTAACCGTGAC 60.736 63.158 0.00 0.00 0.00 3.67
1718 1920 1.592669 GAGATGATCACCGGCCGTG 60.593 63.158 26.12 21.41 44.50 4.94
1719 1921 2.021068 CTGAGATGATCACCGGCCGT 62.021 60.000 26.12 9.63 33.22 5.68
1720 1922 1.300465 CTGAGATGATCACCGGCCG 60.300 63.158 21.04 21.04 33.22 6.13
1721 1923 0.683973 ATCTGAGATGATCACCGGCC 59.316 55.000 0.00 0.00 33.22 6.13
1722 1924 1.668337 CGATCTGAGATGATCACCGGC 60.668 57.143 0.00 0.00 42.01 6.13
1758 1960 5.515982 CACACATCATCTCTCTTCTTTCTCG 59.484 44.000 0.00 0.00 0.00 4.04
1763 1968 6.608405 AGATCTCACACATCATCTCTCTTCTT 59.392 38.462 0.00 0.00 0.00 2.52
1766 1971 6.017192 CGTAGATCTCACACATCATCTCTCTT 60.017 42.308 0.00 0.00 0.00 2.85
1767 1972 5.469760 CGTAGATCTCACACATCATCTCTCT 59.530 44.000 0.00 0.00 0.00 3.10
1768 1973 5.334802 CCGTAGATCTCACACATCATCTCTC 60.335 48.000 0.00 0.00 0.00 3.20
1769 1974 4.518590 CCGTAGATCTCACACATCATCTCT 59.481 45.833 0.00 0.00 0.00 3.10
1779 1984 4.781934 TGAATCTCTCCGTAGATCTCACA 58.218 43.478 0.00 0.00 35.10 3.58
1953 2163 0.598158 AAAGTAAACCGTGCGAGCGA 60.598 50.000 0.00 0.00 0.00 4.93
1955 2165 2.394545 AAAAAGTAAACCGTGCGAGC 57.605 45.000 0.00 0.00 0.00 5.03
2136 2357 2.494073 GGGGCAGATAGATCTAGAACGG 59.506 54.545 8.70 4.74 34.85 4.44
2159 2380 3.373830 AGAGGGAGGAGATCAAGACAAG 58.626 50.000 0.00 0.00 0.00 3.16
2160 2381 3.481559 AGAGGGAGGAGATCAAGACAA 57.518 47.619 0.00 0.00 0.00 3.18
2161 2382 3.102972 CAAGAGGGAGGAGATCAAGACA 58.897 50.000 0.00 0.00 0.00 3.41
2162 2383 3.103742 ACAAGAGGGAGGAGATCAAGAC 58.896 50.000 0.00 0.00 0.00 3.01
2163 2384 3.481559 ACAAGAGGGAGGAGATCAAGA 57.518 47.619 0.00 0.00 0.00 3.02
2164 2385 4.026744 TGTACAAGAGGGAGGAGATCAAG 58.973 47.826 0.00 0.00 0.00 3.02
2165 2386 4.061131 TGTACAAGAGGGAGGAGATCAA 57.939 45.455 0.00 0.00 0.00 2.57
2166 2387 3.757947 TGTACAAGAGGGAGGAGATCA 57.242 47.619 0.00 0.00 0.00 2.92
2262 2495 9.956720 GTTACTTTTTACCTACCTTTTTCTTCC 57.043 33.333 0.00 0.00 0.00 3.46
2517 2754 6.816134 AAACTAACATACACACATGCATGA 57.184 33.333 32.75 10.72 33.77 3.07
2883 3131 8.772705 GCCGAGTAGCGTAGAAATATATATACT 58.227 37.037 0.00 2.20 38.67 2.12
2884 3132 8.014517 GGCCGAGTAGCGTAGAAATATATATAC 58.985 40.741 0.00 0.00 38.67 1.47
2885 3133 7.935755 AGGCCGAGTAGCGTAGAAATATATATA 59.064 37.037 0.00 0.00 38.67 0.86
2886 3134 6.771749 AGGCCGAGTAGCGTAGAAATATATAT 59.228 38.462 0.00 0.00 38.67 0.86
2903 3151 2.342648 GTTCCGAACAGGCCGAGT 59.657 61.111 6.38 0.00 40.77 4.18
3495 3936 5.009510 CACAAATCTACAATCACCACAACCA 59.990 40.000 0.00 0.00 0.00 3.67
3496 3937 5.460646 CACAAATCTACAATCACCACAACC 58.539 41.667 0.00 0.00 0.00 3.77
3497 3938 5.460646 CCACAAATCTACAATCACCACAAC 58.539 41.667 0.00 0.00 0.00 3.32
3498 3939 4.022416 GCCACAAATCTACAATCACCACAA 60.022 41.667 0.00 0.00 0.00 3.33
3539 3980 1.664873 GGGAAGTGCCGGATAAAGTC 58.335 55.000 5.05 0.00 37.63 3.01
3547 3988 0.885596 TTAACAACGGGAAGTGCCGG 60.886 55.000 15.96 0.00 42.39 6.13
3607 4051 4.082190 CCAGAACATCAAGAGTAACTCGGA 60.082 45.833 0.00 0.00 35.36 4.55
3699 4143 1.536766 TCAGCTTGCTTTCGTTCATGG 59.463 47.619 0.00 0.00 0.00 3.66
3709 4153 1.064611 AGCAGATCCATCAGCTTGCTT 60.065 47.619 0.80 0.00 45.72 3.91
3900 4344 1.432270 GAGCGTTACATCAGGCCAGC 61.432 60.000 5.01 0.00 0.00 4.85
4009 4454 4.499472 TGAAACTTAAGGGAGAAGGGAGA 58.501 43.478 7.53 0.00 0.00 3.71
4010 4455 4.532521 TCTGAAACTTAAGGGAGAAGGGAG 59.467 45.833 7.53 0.00 0.00 4.30
4011 4456 4.499472 TCTGAAACTTAAGGGAGAAGGGA 58.501 43.478 7.53 0.00 0.00 4.20
4012 4457 4.910458 TCTGAAACTTAAGGGAGAAGGG 57.090 45.455 7.53 0.00 0.00 3.95
4013 4458 6.054860 TGATCTGAAACTTAAGGGAGAAGG 57.945 41.667 7.53 0.00 0.00 3.46
4014 4459 5.584251 GCTGATCTGAAACTTAAGGGAGAAG 59.416 44.000 7.53 0.00 0.00 2.85
4015 4460 5.491982 GCTGATCTGAAACTTAAGGGAGAA 58.508 41.667 7.53 0.00 0.00 2.87
4108 4555 9.105206 CTGAAACAATTCAAAACAAACACAAAG 57.895 29.630 0.00 0.00 44.64 2.77
4114 4561 6.020984 GGTGCTGAAACAATTCAAAACAAAC 58.979 36.000 0.00 0.00 44.64 2.93
4253 4702 9.344772 GATCAGGAGATACAGACTTAGACTTAA 57.655 37.037 0.00 0.00 33.72 1.85
4451 4900 6.014242 TGCCAAGAAGAGACATAAGAAGAGAA 60.014 38.462 0.00 0.00 0.00 2.87
4719 5171 0.792640 GTCGACAATGCACCACAGAG 59.207 55.000 11.55 0.00 0.00 3.35
4783 5235 2.705658 CTCCCAGTTGGCTCCACATATA 59.294 50.000 0.00 0.00 0.00 0.86
4784 5236 1.492176 CTCCCAGTTGGCTCCACATAT 59.508 52.381 0.00 0.00 0.00 1.78
4785 5237 0.911769 CTCCCAGTTGGCTCCACATA 59.088 55.000 0.00 0.00 0.00 2.29
4786 5238 1.687612 CTCCCAGTTGGCTCCACAT 59.312 57.895 0.00 0.00 0.00 3.21
4788 5240 2.352805 CCTCCCAGTTGGCTCCAC 59.647 66.667 0.00 0.00 0.00 4.02
4810 5262 0.326904 TGGGATGCCTCTGTCCATCT 60.327 55.000 4.35 0.00 38.28 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.