Multiple sequence alignment - TraesCS5D01G068600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G068600 chr5D 100.000 2255 0 0 865 3119 65041798 65039544 0.000000e+00 4165.0
1 TraesCS5D01G068600 chr5D 92.498 1173 63 12 1147 2311 65004099 65005254 0.000000e+00 1655.0
2 TraesCS5D01G068600 chr5D 100.000 464 0 0 1 464 65042662 65042199 0.000000e+00 857.0
3 TraesCS5D01G068600 chr5D 87.895 727 45 20 2398 3119 65006529 65007217 0.000000e+00 815.0
4 TraesCS5D01G068600 chr5A 91.814 1417 88 13 866 2264 54821229 54819823 0.000000e+00 1949.0
5 TraesCS5D01G068600 chr5A 88.078 411 36 11 6 409 54818960 54818556 2.810000e-130 475.0
6 TraesCS5D01G068600 chr5A 90.476 357 30 3 1 353 54822664 54822308 4.710000e-128 468.0
7 TraesCS5D01G068600 chr5A 89.362 188 20 0 865 1052 54817584 54817397 1.450000e-58 237.0
8 TraesCS5D01G068600 chr5B 92.547 1288 62 13 866 2148 65538890 65537632 0.000000e+00 1816.0
9 TraesCS5D01G068600 chr5B 94.350 885 47 1 866 1750 65496879 65497760 0.000000e+00 1354.0
10 TraesCS5D01G068600 chr5B 88.092 781 43 17 2343 3119 65497774 65498508 0.000000e+00 881.0
11 TraesCS5D01G068600 chr5B 94.444 414 19 3 2398 2808 65533307 65532895 4.390000e-178 634.0
12 TraesCS5D01G068600 chr5B 89.831 354 33 2 1 351 65495343 65495696 4.740000e-123 451.0
13 TraesCS5D01G068600 chr5B 88.750 80 3 1 2210 2283 65537618 65537539 3.310000e-15 93.5
14 TraesCS5D01G068600 chr6D 87.213 305 31 2 2632 2934 226021594 226021892 1.070000e-89 340.0
15 TraesCS5D01G068600 chr6B 86.275 306 33 3 2632 2934 329713475 329713774 1.080000e-84 324.0
16 TraesCS5D01G068600 chr4A 82.673 202 26 6 986 1187 567707925 567707733 1.490000e-38 171.0
17 TraesCS5D01G068600 chr7A 90.323 62 6 0 1119 1180 315275558 315275619 7.170000e-12 82.4
18 TraesCS5D01G068600 chr1A 90.323 62 6 0 1119 1180 549592919 549592980 7.170000e-12 82.4
19 TraesCS5D01G068600 chr1B 85.507 69 10 0 1119 1187 573761820 573761888 4.310000e-09 73.1
20 TraesCS5D01G068600 chr2D 84.058 69 11 0 1119 1187 645836841 645836909 2.010000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G068600 chr5D 65039544 65042662 3118 True 2511.000000 4165 100.000000 1 3119 2 chr5D.!!$R1 3118
1 TraesCS5D01G068600 chr5D 65004099 65007217 3118 False 1235.000000 1655 90.196500 1147 3119 2 chr5D.!!$F1 1972
2 TraesCS5D01G068600 chr5A 54817397 54822664 5267 True 782.250000 1949 89.932500 1 2264 4 chr5A.!!$R1 2263
3 TraesCS5D01G068600 chr5B 65537539 65538890 1351 True 954.750000 1816 90.648500 866 2283 2 chr5B.!!$R2 1417
4 TraesCS5D01G068600 chr5B 65495343 65498508 3165 False 895.333333 1354 90.757667 1 3119 3 chr5B.!!$F1 3118

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
266 270 0.589229 GGACGCGACGACTATGTCTG 60.589 60.0 15.93 0.0 36.71 3.51 F
368 398 0.905357 AAGAGTCGATCCCTGGTTGG 59.095 55.0 0.00 0.0 0.00 3.77 F
1584 2746 0.690762 ACTACAATGCCCACGAAGGT 59.309 50.0 0.00 0.0 34.66 3.50 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1345 2499 0.389391 AACCGCCGGTATGATCTCTG 59.611 55.0 10.3 0.0 33.12 3.35 R
1893 3055 0.390472 CACGCTTGAAGGAGGAGGAC 60.390 60.0 0.0 0.0 0.00 3.85 R
3085 6656 1.220529 GCAGCCCTTGAAAGCAAAAC 58.779 50.0 0.0 0.0 32.73 2.43 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.912149 TGGTATTCAGGGAGCTGATTTAT 57.088 39.130 0.00 0.00 32.91 1.40
45 47 2.610859 ACCGGGGCAAGATCCACT 60.611 61.111 6.32 0.00 0.00 4.00
61 63 1.964223 CCACTAGCGATATGACCAGGT 59.036 52.381 0.00 0.00 0.00 4.00
157 161 3.742433 AACCGTTTTTGATGCATTGGA 57.258 38.095 0.00 0.00 0.00 3.53
165 169 2.855660 TGATGCATTGGAATGAAGCG 57.144 45.000 0.00 0.00 38.70 4.68
193 197 3.392947 TCCAAATTATAGTGGGCCATCGA 59.607 43.478 10.70 0.00 35.46 3.59
214 218 4.821805 CGATATTACATTTTGAGGCCCACT 59.178 41.667 0.00 0.00 0.00 4.00
239 243 3.107402 ACTGAGAGGCATAGTTCAGGA 57.893 47.619 10.50 0.00 40.97 3.86
254 258 2.029964 GGAAGGTTGTGGACGCGA 59.970 61.111 15.93 0.00 0.00 5.87
266 270 0.589229 GGACGCGACGACTATGTCTG 60.589 60.000 15.93 0.00 36.71 3.51
276 280 4.973739 GACGACTATGTCTGGCATTAAGCA 60.974 45.833 0.00 0.00 39.41 3.91
283 287 7.872962 TATGTCTGGCATTAAGCAAGTCGCT 62.873 44.000 0.00 0.00 45.11 4.93
318 322 2.028839 TGAAGGTTCGAAGGTATTGCGA 60.029 45.455 0.00 0.00 0.00 5.10
331 335 3.716145 TATTGCGACGGCCCATTCACA 62.716 52.381 0.00 0.00 38.85 3.58
368 398 0.905357 AAGAGTCGATCCCTGGTTGG 59.095 55.000 0.00 0.00 0.00 3.77
380 410 2.624029 CCCTGGTTGGCAGGATTGTTAT 60.624 50.000 0.00 0.00 42.27 1.89
412 1566 1.679139 CCACTGCTTTGAGGTTGTGA 58.321 50.000 0.00 0.00 0.00 3.58
416 1570 1.000938 CTGCTTTGAGGTTGTGAAGCC 60.001 52.381 4.69 0.00 42.81 4.35
442 1596 1.446618 GCAGCATTTCCAAAGCCGG 60.447 57.895 0.00 0.00 0.00 6.13
443 1597 1.446618 CAGCATTTCCAAAGCCGGC 60.447 57.895 21.89 21.89 0.00 6.13
444 1598 2.125552 GCATTTCCAAAGCCGGCC 60.126 61.111 26.15 5.07 0.00 6.13
445 1599 2.578664 CATTTCCAAAGCCGGCCC 59.421 61.111 26.15 0.00 0.00 5.80
446 1600 2.119391 ATTTCCAAAGCCGGCCCA 59.881 55.556 26.15 0.00 0.00 5.36
447 1601 1.306056 ATTTCCAAAGCCGGCCCAT 60.306 52.632 26.15 7.06 0.00 4.00
449 1603 1.540435 TTTCCAAAGCCGGCCCATTC 61.540 55.000 26.15 0.00 0.00 2.67
450 1604 3.825611 CCAAAGCCGGCCCATTCG 61.826 66.667 26.15 5.03 0.00 3.34
453 1607 4.820744 AAGCCGGCCCATTCGCAT 62.821 61.111 26.15 0.00 0.00 4.73
456 1610 3.282157 CCGGCCCATTCGCATGAG 61.282 66.667 0.00 0.00 31.07 2.90
457 1611 2.514592 CGGCCCATTCGCATGAGT 60.515 61.111 0.00 0.00 31.07 3.41
458 1612 2.114670 CGGCCCATTCGCATGAGTT 61.115 57.895 0.00 0.00 31.07 3.01
459 1613 1.656818 CGGCCCATTCGCATGAGTTT 61.657 55.000 0.00 0.00 31.07 2.66
461 1615 1.066929 GGCCCATTCGCATGAGTTTTT 60.067 47.619 0.00 0.00 31.07 1.94
920 2074 3.701604 CTCGTGCCCGTCCACTAGC 62.702 68.421 0.00 0.00 33.60 3.42
931 2085 4.208686 CACTAGCCGCCTCCGACC 62.209 72.222 0.00 0.00 36.29 4.79
1433 2595 3.358076 CTCTCCAGGGCGTCGGTTC 62.358 68.421 0.00 0.00 0.00 3.62
1446 2608 3.284449 GGTTCCCGCGTTGCTGTT 61.284 61.111 4.92 0.00 0.00 3.16
1584 2746 0.690762 ACTACAATGCCCACGAAGGT 59.309 50.000 0.00 0.00 34.66 3.50
1826 2988 1.599047 CGGATGGCAAGTGGACTCT 59.401 57.895 0.00 0.00 0.00 3.24
1885 3047 1.546923 TGAAGCTCACGACGGGATTTA 59.453 47.619 0.00 0.00 0.00 1.40
1886 3048 2.028839 TGAAGCTCACGACGGGATTTAA 60.029 45.455 0.00 0.00 0.00 1.52
1887 3049 2.981859 AGCTCACGACGGGATTTAAT 57.018 45.000 0.00 0.00 0.00 1.40
1893 3055 5.478233 TCACGACGGGATTTAATGAAATG 57.522 39.130 0.00 0.00 35.33 2.32
2025 3187 4.694233 AGGCTGTGGTGCTGCGAG 62.694 66.667 0.00 0.00 42.12 5.03
2124 3286 3.690460 AGATTTCGCCCATTGAGTCTTT 58.310 40.909 0.00 0.00 0.00 2.52
2126 3288 4.524328 AGATTTCGCCCATTGAGTCTTTTT 59.476 37.500 0.00 0.00 0.00 1.94
2205 3375 9.988815 AAATCACAATATATAGTCCTGTCTGTC 57.011 33.333 0.00 0.00 0.00 3.51
2225 3395 5.541845 TGTCAGGTTCATGTTCTAGAGTTG 58.458 41.667 0.00 0.00 0.00 3.16
2233 3407 5.798132 TCATGTTCTAGAGTTGCACAATCT 58.202 37.500 0.00 0.00 0.00 2.40
2307 3487 6.458210 ACTGCATTTTCCCAAGTAATCTTTG 58.542 36.000 0.00 0.00 0.00 2.77
2309 3489 7.060383 TGCATTTTCCCAAGTAATCTTTGAA 57.940 32.000 0.00 0.00 0.00 2.69
2312 3492 8.659491 GCATTTTCCCAAGTAATCTTTGAATTC 58.341 33.333 0.00 0.00 0.00 2.17
2313 3493 9.154847 CATTTTCCCAAGTAATCTTTGAATTCC 57.845 33.333 2.27 0.00 0.00 3.01
2315 3495 6.834168 TCCCAAGTAATCTTTGAATTCCAC 57.166 37.500 2.27 0.00 0.00 4.02
2316 3496 5.714806 TCCCAAGTAATCTTTGAATTCCACC 59.285 40.000 2.27 0.00 0.00 4.61
2317 3497 5.716703 CCCAAGTAATCTTTGAATTCCACCT 59.283 40.000 2.27 0.00 0.00 4.00
2320 3500 8.408601 CCAAGTAATCTTTGAATTCCACCTATG 58.591 37.037 2.27 0.00 0.00 2.23
2322 3502 5.859205 AATCTTTGAATTCCACCTATGGC 57.141 39.130 2.27 0.00 46.80 4.40
2323 3503 3.631250 TCTTTGAATTCCACCTATGGCC 58.369 45.455 2.27 0.00 46.80 5.36
2324 3504 2.051334 TTGAATTCCACCTATGGCCG 57.949 50.000 2.27 0.00 46.80 6.13
2325 3505 0.465460 TGAATTCCACCTATGGCCGC 60.465 55.000 2.27 0.00 46.80 6.53
2326 3506 0.465460 GAATTCCACCTATGGCCGCA 60.465 55.000 0.00 0.00 46.80 5.69
2327 3507 0.185901 AATTCCACCTATGGCCGCAT 59.814 50.000 0.00 0.00 46.80 4.73
2328 3508 1.064003 ATTCCACCTATGGCCGCATA 58.936 50.000 0.00 0.00 46.80 3.14
2329 3509 0.107831 TTCCACCTATGGCCGCATAC 59.892 55.000 0.00 0.00 46.80 2.39
2331 3511 0.179032 CCACCTATGGCCGCATACAA 60.179 55.000 0.00 0.00 39.82 2.41
2333 3513 2.229792 CACCTATGGCCGCATACAAAT 58.770 47.619 0.00 0.00 0.00 2.32
2334 3514 2.030893 CACCTATGGCCGCATACAAATG 60.031 50.000 0.00 0.00 36.09 2.32
2458 5747 7.815383 TGGAACATAATTCCATCTTCCACTAT 58.185 34.615 4.24 0.00 43.17 2.12
2570 5859 7.851387 TTTTGACATGTACACTCACAACTTA 57.149 32.000 0.00 0.00 30.84 2.24
2606 5897 4.235079 TCCCCACATTTGACTCCAATAG 57.765 45.455 0.00 0.00 31.46 1.73
2638 5929 6.231211 AGATGTTGACCGTCTTCTTAACAAT 58.769 36.000 5.71 0.00 35.88 2.71
2849 6142 9.321562 CAACGTAATGGTAGGTCTGTATAATTT 57.678 33.333 0.00 0.00 0.00 1.82
2853 6146 6.989155 ATGGTAGGTCTGTATAATTTCCGA 57.011 37.500 0.00 0.00 0.00 4.55
2858 6151 6.619801 AGGTCTGTATAATTTCCGAATTGC 57.380 37.500 0.00 0.00 36.22 3.56
2860 6153 5.298276 GGTCTGTATAATTTCCGAATTGCCA 59.702 40.000 0.00 0.00 36.22 4.92
2953 6246 1.115467 GATGACACCGTCCATCTCCT 58.885 55.000 0.00 0.00 0.00 3.69
2959 6528 1.279271 CACCGTCCATCTCCTTTTCCT 59.721 52.381 0.00 0.00 0.00 3.36
2974 6543 4.780554 CCTTTTCCTCTAGACCTCTCCTTT 59.219 45.833 0.00 0.00 0.00 3.11
3050 6620 7.518161 TCGTTTAACTACAATCTGATGCAAAG 58.482 34.615 0.00 0.00 0.00 2.77
3063 6633 5.470098 TCTGATGCAAAGGAGTTCTGTTAAC 59.530 40.000 0.00 0.00 0.00 2.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 2.744202 CGGTGCCATATAAATCAGCTCC 59.256 50.000 0.00 0.00 34.55 4.70
12 13 2.553028 CCCGGTGCCATATAAATCAGCT 60.553 50.000 0.00 0.00 0.00 4.24
22 23 2.337879 GATCTTGCCCCGGTGCCATA 62.338 60.000 6.41 0.00 0.00 2.74
45 47 5.379187 TGTAAGTACCTGGTCATATCGCTA 58.621 41.667 0.63 0.00 0.00 4.26
141 145 5.624292 GCTTCATTCCAATGCATCAAAAAC 58.376 37.500 0.00 0.00 36.36 2.43
157 161 3.598019 ATTTGGATGTTGCGCTTCATT 57.402 38.095 9.73 0.00 0.00 2.57
165 169 4.501400 GGCCCACTATAATTTGGATGTTGC 60.501 45.833 0.00 0.00 34.46 4.17
193 197 4.895297 CCAGTGGGCCTCAAAATGTAATAT 59.105 41.667 4.53 0.00 0.00 1.28
214 218 4.093743 TGAACTATGCCTCTCAGTAACCA 58.906 43.478 0.00 0.00 0.00 3.67
239 243 2.660552 CGTCGCGTCCACAACCTT 60.661 61.111 5.77 0.00 0.00 3.50
254 258 3.118775 TGCTTAATGCCAGACATAGTCGT 60.119 43.478 0.00 0.00 38.34 4.34
276 280 3.743396 CAGCAAGACTTCTTTAGCGACTT 59.257 43.478 0.00 0.00 33.11 3.01
283 287 4.750098 CGAACCTTCAGCAAGACTTCTTTA 59.250 41.667 0.00 0.00 33.11 1.85
331 335 6.151144 CGACTCTTTTTACTTTGAATCCCCAT 59.849 38.462 0.00 0.00 0.00 4.00
340 344 5.122396 CCAGGGATCGACTCTTTTTACTTTG 59.878 44.000 0.00 0.00 0.00 2.77
368 398 1.655350 GCGCGCATAACAATCCTGC 60.655 57.895 29.10 0.00 0.00 4.85
380 410 4.069232 AGTGGCTAGAAGCGCGCA 62.069 61.111 35.10 11.86 43.62 6.09
400 430 4.431416 TTCTAGGCTTCACAACCTCAAA 57.569 40.909 0.00 0.00 37.50 2.69
402 485 4.389374 CTTTTCTAGGCTTCACAACCTCA 58.611 43.478 0.00 0.00 37.50 3.86
412 1566 3.194329 GGAAATGCTGCTTTTCTAGGCTT 59.806 43.478 28.66 3.47 34.29 4.35
416 1570 4.624452 GCTTTGGAAATGCTGCTTTTCTAG 59.376 41.667 28.66 23.98 42.99 2.43
442 1596 2.368655 AAAAACTCATGCGAATGGGC 57.631 45.000 2.05 0.00 0.00 5.36
864 2018 2.284995 AGGAGAGGTCTGGTGGGC 60.285 66.667 0.00 0.00 0.00 5.36
902 2056 2.490217 CTAGTGGACGGGCACGAG 59.510 66.667 19.19 0.00 44.60 4.18
1082 2236 2.169789 CGTGCGCCAGAGGAGATTG 61.170 63.158 4.18 0.00 0.00 2.67
1084 2238 4.521062 GCGTGCGCCAGAGGAGAT 62.521 66.667 4.18 0.00 34.56 2.75
1254 2408 4.175489 CGGCCGTCGACGATGTCT 62.175 66.667 37.65 0.00 43.02 3.41
1345 2499 0.389391 AACCGCCGGTATGATCTCTG 59.611 55.000 10.30 0.00 33.12 3.35
1405 2567 1.340502 GCCCTGGAGAGGAAAGAAAGG 60.341 57.143 0.00 0.00 42.93 3.11
1411 2573 2.646175 CGACGCCCTGGAGAGGAAA 61.646 63.158 0.00 0.00 42.93 3.13
1433 2595 4.980903 GCACAACAGCAACGCGGG 62.981 66.667 12.47 2.74 0.00 6.13
1440 2602 2.253758 GCCGAAGAGCACAACAGCA 61.254 57.895 0.00 0.00 36.85 4.41
1468 2630 3.047877 GTAGCGGCGCCACAAGTT 61.048 61.111 30.40 10.88 0.00 2.66
1878 3040 5.536538 GGAGGAGGACATTTCATTAAATCCC 59.463 44.000 0.00 0.00 32.87 3.85
1885 3047 4.934797 TGAAGGAGGAGGACATTTCATT 57.065 40.909 0.00 0.00 0.00 2.57
1886 3048 4.853007 CTTGAAGGAGGAGGACATTTCAT 58.147 43.478 0.00 0.00 0.00 2.57
1887 3049 3.560025 GCTTGAAGGAGGAGGACATTTCA 60.560 47.826 0.00 0.00 0.00 2.69
1893 3055 0.390472 CACGCTTGAAGGAGGAGGAC 60.390 60.000 0.00 0.00 0.00 3.85
2040 3202 2.190578 CTAAGCCCTCCAAGCCGG 59.809 66.667 0.00 0.00 0.00 6.13
2124 3286 7.087639 CCTTACTTGCATTTAATCGGACAAAA 58.912 34.615 0.00 0.00 0.00 2.44
2126 3288 5.124776 CCCTTACTTGCATTTAATCGGACAA 59.875 40.000 0.00 0.00 0.00 3.18
2135 3302 4.107127 ACACACCCCTTACTTGCATTTA 57.893 40.909 0.00 0.00 0.00 1.40
2205 3375 4.153117 GTGCAACTCTAGAACATGAACCTG 59.847 45.833 0.00 0.00 0.00 4.00
2225 3395 4.708726 AGCATTTCTGGTAAGATTGTGC 57.291 40.909 0.00 0.00 35.93 4.57
2233 3407 6.368779 ACCTAACAGTAGCATTTCTGGTAA 57.631 37.500 0.00 0.00 37.12 2.85
2313 3493 1.674359 TTTGTATGCGGCCATAGGTG 58.326 50.000 2.24 0.00 34.72 4.00
2315 3495 1.068333 GCATTTGTATGCGGCCATAGG 60.068 52.381 2.24 0.00 46.89 2.57
2316 3496 2.336554 GCATTTGTATGCGGCCATAG 57.663 50.000 2.24 0.00 46.89 2.23
2325 3505 6.237279 GCAACTTTACATCACGCATTTGTATG 60.237 38.462 0.00 0.00 34.76 2.39
2326 3506 5.799936 GCAACTTTACATCACGCATTTGTAT 59.200 36.000 0.00 0.00 0.00 2.29
2327 3507 5.150683 GCAACTTTACATCACGCATTTGTA 58.849 37.500 0.00 0.00 0.00 2.41
2328 3508 3.980775 GCAACTTTACATCACGCATTTGT 59.019 39.130 0.00 0.00 0.00 2.83
2329 3509 3.057999 CGCAACTTTACATCACGCATTTG 59.942 43.478 0.00 0.00 0.00 2.32
2331 3511 2.482336 TCGCAACTTTACATCACGCATT 59.518 40.909 0.00 0.00 0.00 3.56
2333 3513 1.193650 GTCGCAACTTTACATCACGCA 59.806 47.619 0.00 0.00 0.00 5.24
2334 3514 1.459592 AGTCGCAACTTTACATCACGC 59.540 47.619 0.00 0.00 28.74 5.34
2335 3515 3.469629 CAAGTCGCAACTTTACATCACG 58.530 45.455 0.00 0.00 43.28 4.35
2336 3516 3.226347 GCAAGTCGCAACTTTACATCAC 58.774 45.455 0.00 0.00 43.28 3.06
2337 3517 3.536158 GCAAGTCGCAACTTTACATCA 57.464 42.857 0.00 0.00 43.28 3.07
2362 3542 2.817258 CCATGGTTGGTGTCAAACGTAT 59.183 45.455 2.57 0.00 43.24 3.06
2417 5706 2.936498 GTTCCAGACCGAACATGTATGG 59.064 50.000 13.31 13.31 44.56 2.74
2458 5747 7.568349 AGCATCCATATTGTACTCTCTTCAAA 58.432 34.615 0.00 0.00 0.00 2.69
2588 5879 5.389859 TTTGCTATTGGAGTCAAATGTGG 57.610 39.130 2.74 0.00 36.36 4.17
2606 5897 5.296813 AGACGGTCAACATCTAAATTTGC 57.703 39.130 11.27 0.00 0.00 3.68
2638 5929 8.735692 TTGTTGATATGCTATCTCACATTCAA 57.264 30.769 5.25 0.00 0.00 2.69
2690 5981 5.920840 TGAGACTTGACGAAAAGACATGTAG 59.079 40.000 0.00 0.00 34.33 2.74
2805 6098 2.145397 TGGGTTAACAAACCACAGCA 57.855 45.000 8.10 0.00 45.21 4.41
2849 6142 4.487714 AGACTTCTATTGGCAATTCGGA 57.512 40.909 19.21 11.41 0.00 4.55
2932 6225 1.482593 GGAGATGGACGGTGTCATCTT 59.517 52.381 18.55 8.06 33.81 2.40
2953 6246 6.765355 AAAAAGGAGAGGTCTAGAGGAAAA 57.235 37.500 0.00 0.00 0.00 2.29
3073 6644 8.469200 CCTTGAAAGCAAAACTATAATGGATGA 58.531 33.333 0.00 0.00 32.73 2.92
3085 6656 1.220529 GCAGCCCTTGAAAGCAAAAC 58.779 50.000 0.00 0.00 32.73 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.