Multiple sequence alignment - TraesCS5D01G068400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G068400 chr5D 100.000 3060 0 0 1 3060 64293525 64290466 0.000000e+00 5651.0
1 TraesCS5D01G068400 chr5D 80.000 170 28 6 1371 1537 355796216 355796050 1.490000e-23 121.0
2 TraesCS5D01G068400 chr5D 92.500 40 3 0 1096 1135 356197566 356197605 1.190000e-04 58.4
3 TraesCS5D01G068400 chr5B 88.898 2468 200 38 609 3060 65965702 65963293 0.000000e+00 2972.0
4 TraesCS5D01G068400 chr5A 87.078 2639 221 61 378 2969 54652501 54655066 0.000000e+00 2874.0
5 TraesCS5D01G068400 chr5A 76.761 284 50 15 1262 1537 457086533 457086808 8.840000e-31 145.0
6 TraesCS5D01G068400 chr5A 76.071 280 59 7 1262 1537 457511797 457512072 4.110000e-29 139.0
7 TraesCS5D01G068400 chr5A 78.824 170 30 6 1371 1537 457515107 457515273 3.230000e-20 110.0
8 TraesCS5D01G068400 chr5A 92.500 40 3 0 1096 1135 457894028 457894067 1.190000e-04 58.4
9 TraesCS5D01G068400 chr3B 84.820 942 109 18 1062 1989 127852447 127853368 0.000000e+00 917.0
10 TraesCS5D01G068400 chr3B 80.628 573 96 10 2413 2976 825013979 825013413 2.180000e-116 429.0
11 TraesCS5D01G068400 chr3B 75.843 919 158 37 2165 3035 174453053 174452151 2.840000e-110 409.0
12 TraesCS5D01G068400 chr3D 83.850 935 122 18 1068 1989 81689649 81690567 0.000000e+00 863.0
13 TraesCS5D01G068400 chr3D 80.142 564 104 6 2413 2969 451894406 451893844 6.100000e-112 414.0
14 TraesCS5D01G068400 chr3A 85.019 514 60 8 1481 1989 95942452 95942953 9.790000e-140 507.0
15 TraesCS5D01G068400 chr7D 81.289 636 103 12 2413 3037 575688961 575689591 4.550000e-138 501.0
16 TraesCS5D01G068400 chr7B 81.379 580 95 9 2413 2982 707963426 707964002 7.730000e-126 460.0
17 TraesCS5D01G068400 chr7B 74.474 380 63 24 1101 1454 87028946 87029317 1.910000e-27 134.0
18 TraesCS5D01G068400 chrUn 80.454 573 97 10 2413 2976 158073451 158072885 1.010000e-114 424.0
19 TraesCS5D01G068400 chr2D 75.359 905 178 32 1100 1971 404889184 404890076 7.950000e-106 394.0
20 TraesCS5D01G068400 chr1B 78.331 623 116 11 2410 3018 121736910 121736293 4.790000e-103 385.0
21 TraesCS5D01G068400 chr7A 75.000 380 61 24 1101 1454 127347937 127348308 8.840000e-31 145.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G068400 chr5D 64290466 64293525 3059 True 5651 5651 100.000 1 3060 1 chr5D.!!$R1 3059
1 TraesCS5D01G068400 chr5B 65963293 65965702 2409 True 2972 2972 88.898 609 3060 1 chr5B.!!$R1 2451
2 TraesCS5D01G068400 chr5A 54652501 54655066 2565 False 2874 2874 87.078 378 2969 1 chr5A.!!$F1 2591
3 TraesCS5D01G068400 chr3B 127852447 127853368 921 False 917 917 84.820 1062 1989 1 chr3B.!!$F1 927
4 TraesCS5D01G068400 chr3B 825013413 825013979 566 True 429 429 80.628 2413 2976 1 chr3B.!!$R2 563
5 TraesCS5D01G068400 chr3B 174452151 174453053 902 True 409 409 75.843 2165 3035 1 chr3B.!!$R1 870
6 TraesCS5D01G068400 chr3D 81689649 81690567 918 False 863 863 83.850 1068 1989 1 chr3D.!!$F1 921
7 TraesCS5D01G068400 chr3D 451893844 451894406 562 True 414 414 80.142 2413 2969 1 chr3D.!!$R1 556
8 TraesCS5D01G068400 chr3A 95942452 95942953 501 False 507 507 85.019 1481 1989 1 chr3A.!!$F1 508
9 TraesCS5D01G068400 chr7D 575688961 575689591 630 False 501 501 81.289 2413 3037 1 chr7D.!!$F1 624
10 TraesCS5D01G068400 chr7B 707963426 707964002 576 False 460 460 81.379 2413 2982 1 chr7B.!!$F2 569
11 TraesCS5D01G068400 chrUn 158072885 158073451 566 True 424 424 80.454 2413 2976 1 chrUn.!!$R1 563
12 TraesCS5D01G068400 chr2D 404889184 404890076 892 False 394 394 75.359 1100 1971 1 chr2D.!!$F1 871
13 TraesCS5D01G068400 chr1B 121736293 121736910 617 True 385 385 78.331 2410 3018 1 chr1B.!!$R1 608

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
623 632 0.108992 TTTGTAGGCAGCTCCGTACG 60.109 55.0 8.69 8.69 40.77 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2115 2176 0.312416 GAGAGCACGCGAGGTATGAT 59.688 55.0 15.93 0.0 0.0 2.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.632034 GTGACCTCTACAAATCCCCTAAT 57.368 43.478 0.00 0.00 0.00 1.73
23 24 6.742559 GTGACCTCTACAAATCCCCTAATA 57.257 41.667 0.00 0.00 0.00 0.98
24 25 7.133133 GTGACCTCTACAAATCCCCTAATAA 57.867 40.000 0.00 0.00 0.00 1.40
25 26 7.571025 GTGACCTCTACAAATCCCCTAATAAA 58.429 38.462 0.00 0.00 0.00 1.40
26 27 8.050930 GTGACCTCTACAAATCCCCTAATAAAA 58.949 37.037 0.00 0.00 0.00 1.52
27 28 8.050930 TGACCTCTACAAATCCCCTAATAAAAC 58.949 37.037 0.00 0.00 0.00 2.43
28 29 8.171337 ACCTCTACAAATCCCCTAATAAAACT 57.829 34.615 0.00 0.00 0.00 2.66
29 30 8.621073 ACCTCTACAAATCCCCTAATAAAACTT 58.379 33.333 0.00 0.00 0.00 2.66
30 31 9.121658 CCTCTACAAATCCCCTAATAAAACTTC 57.878 37.037 0.00 0.00 0.00 3.01
31 32 9.907229 CTCTACAAATCCCCTAATAAAACTTCT 57.093 33.333 0.00 0.00 0.00 2.85
34 35 8.502105 ACAAATCCCCTAATAAAACTTCTACG 57.498 34.615 0.00 0.00 0.00 3.51
35 36 7.066645 ACAAATCCCCTAATAAAACTTCTACGC 59.933 37.037 0.00 0.00 0.00 4.42
36 37 5.680594 TCCCCTAATAAAACTTCTACGCA 57.319 39.130 0.00 0.00 0.00 5.24
37 38 5.667466 TCCCCTAATAAAACTTCTACGCAG 58.333 41.667 0.00 0.00 0.00 5.18
38 39 4.814771 CCCCTAATAAAACTTCTACGCAGG 59.185 45.833 0.00 0.00 0.00 4.85
39 40 4.272748 CCCTAATAAAACTTCTACGCAGGC 59.727 45.833 0.00 0.00 0.00 4.85
40 41 4.025979 CCTAATAAAACTTCTACGCAGGCG 60.026 45.833 12.71 12.71 46.03 5.52
41 42 2.728690 TAAAACTTCTACGCAGGCGA 57.271 45.000 21.62 3.24 42.83 5.54
42 43 1.145803 AAAACTTCTACGCAGGCGAC 58.854 50.000 21.62 0.00 42.83 5.19
43 44 0.669625 AAACTTCTACGCAGGCGACC 60.670 55.000 21.62 0.00 42.83 4.79
44 45 2.579787 CTTCTACGCAGGCGACCG 60.580 66.667 21.62 7.86 42.83 4.79
45 46 3.338126 CTTCTACGCAGGCGACCGT 62.338 63.158 21.62 0.00 42.83 4.83
46 47 2.814183 CTTCTACGCAGGCGACCGTT 62.814 60.000 21.62 0.00 42.83 4.44
47 48 2.807631 TTCTACGCAGGCGACCGTTC 62.808 60.000 21.62 0.00 42.83 3.95
48 49 3.620300 CTACGCAGGCGACCGTTCA 62.620 63.158 21.62 0.00 42.83 3.18
49 50 2.884087 CTACGCAGGCGACCGTTCAT 62.884 60.000 21.62 0.00 42.83 2.57
50 51 2.495366 TACGCAGGCGACCGTTCATT 62.495 55.000 21.62 0.00 42.83 2.57
51 52 2.677003 CGCAGGCGACCGTTCATTT 61.677 57.895 8.15 0.00 42.83 2.32
52 53 1.579429 GCAGGCGACCGTTCATTTT 59.421 52.632 0.00 0.00 0.00 1.82
53 54 0.729140 GCAGGCGACCGTTCATTTTG 60.729 55.000 0.00 0.00 0.00 2.44
54 55 0.591170 CAGGCGACCGTTCATTTTGT 59.409 50.000 0.00 0.00 0.00 2.83
55 56 1.001815 CAGGCGACCGTTCATTTTGTT 60.002 47.619 0.00 0.00 0.00 2.83
56 57 1.679153 AGGCGACCGTTCATTTTGTTT 59.321 42.857 0.00 0.00 0.00 2.83
57 58 2.879646 AGGCGACCGTTCATTTTGTTTA 59.120 40.909 0.00 0.00 0.00 2.01
58 59 3.504520 AGGCGACCGTTCATTTTGTTTAT 59.495 39.130 0.00 0.00 0.00 1.40
59 60 4.022676 AGGCGACCGTTCATTTTGTTTATT 60.023 37.500 0.00 0.00 0.00 1.40
60 61 5.181622 AGGCGACCGTTCATTTTGTTTATTA 59.818 36.000 0.00 0.00 0.00 0.98
61 62 6.031471 GGCGACCGTTCATTTTGTTTATTAT 58.969 36.000 0.00 0.00 0.00 1.28
62 63 6.528774 GGCGACCGTTCATTTTGTTTATTATT 59.471 34.615 0.00 0.00 0.00 1.40
63 64 7.062488 GGCGACCGTTCATTTTGTTTATTATTT 59.938 33.333 0.00 0.00 0.00 1.40
64 65 9.063739 GCGACCGTTCATTTTGTTTATTATTTA 57.936 29.630 0.00 0.00 0.00 1.40
87 88 9.732130 TTTATGGATCTGTTTTAATTTTTGGGG 57.268 29.630 0.00 0.00 0.00 4.96
88 89 7.566658 ATGGATCTGTTTTAATTTTTGGGGA 57.433 32.000 0.00 0.00 0.00 4.81
89 90 6.764379 TGGATCTGTTTTAATTTTTGGGGAC 58.236 36.000 0.00 0.00 0.00 4.46
90 91 6.327626 TGGATCTGTTTTAATTTTTGGGGACA 59.672 34.615 0.00 0.00 39.83 4.02
91 92 7.017056 TGGATCTGTTTTAATTTTTGGGGACAT 59.983 33.333 0.00 0.00 42.32 3.06
92 93 8.536175 GGATCTGTTTTAATTTTTGGGGACATA 58.464 33.333 0.00 0.00 42.32 2.29
147 148 9.874205 AATTCCATAATATGTTTTGAACACTGG 57.126 29.630 0.00 0.33 45.50 4.00
148 149 8.642935 TTCCATAATATGTTTTGAACACTGGA 57.357 30.769 0.00 2.38 45.50 3.86
149 150 8.821686 TCCATAATATGTTTTGAACACTGGAT 57.178 30.769 0.00 0.00 45.50 3.41
150 151 9.253832 TCCATAATATGTTTTGAACACTGGATT 57.746 29.630 0.00 0.00 45.50 3.01
204 205 9.605955 TTTCATGTACATCTATTTGAAAACGTG 57.394 29.630 14.58 0.00 32.05 4.49
205 206 8.541133 TCATGTACATCTATTTGAAAACGTGA 57.459 30.769 5.07 0.00 32.87 4.35
206 207 9.161629 TCATGTACATCTATTTGAAAACGTGAT 57.838 29.630 5.07 0.00 31.62 3.06
207 208 9.773328 CATGTACATCTATTTGAAAACGTGATT 57.227 29.630 5.07 0.00 30.13 2.57
291 292 6.702716 TTTTTAATGGGGGCGTTTCTATAG 57.297 37.500 0.00 0.00 0.00 1.31
292 293 5.633655 TTTAATGGGGGCGTTTCTATAGA 57.366 39.130 0.00 0.00 0.00 1.98
293 294 5.836024 TTAATGGGGGCGTTTCTATAGAT 57.164 39.130 2.58 0.00 0.00 1.98
294 295 3.703001 ATGGGGGCGTTTCTATAGATG 57.297 47.619 2.58 0.00 0.00 2.90
295 296 1.697432 TGGGGGCGTTTCTATAGATGG 59.303 52.381 2.58 0.00 0.00 3.51
296 297 1.003233 GGGGGCGTTTCTATAGATGGG 59.997 57.143 2.58 0.00 0.00 4.00
297 298 1.003233 GGGGCGTTTCTATAGATGGGG 59.997 57.143 2.58 0.00 0.00 4.96
298 299 1.975680 GGGCGTTTCTATAGATGGGGA 59.024 52.381 2.58 0.00 0.00 4.81
299 300 2.289506 GGGCGTTTCTATAGATGGGGAC 60.290 54.545 2.58 0.00 0.00 4.46
319 320 9.495572 TGGGGACACATTTTATATTTTTGAAAC 57.504 29.630 0.00 0.00 33.40 2.78
320 321 9.719355 GGGGACACATTTTATATTTTTGAAACT 57.281 29.630 0.00 0.00 0.00 2.66
334 335 7.846644 TTTTTGAAACTTCCGAAGTACTACA 57.153 32.000 14.19 9.18 41.91 2.74
335 336 8.441312 TTTTTGAAACTTCCGAAGTACTACAT 57.559 30.769 14.19 0.00 41.91 2.29
336 337 9.545105 TTTTTGAAACTTCCGAAGTACTACATA 57.455 29.630 14.19 5.46 41.91 2.29
337 338 9.545105 TTTTGAAACTTCCGAAGTACTACATAA 57.455 29.630 14.19 10.02 41.91 1.90
338 339 8.524870 TTGAAACTTCCGAAGTACTACATAAC 57.475 34.615 14.19 0.00 41.91 1.89
339 340 6.803320 TGAAACTTCCGAAGTACTACATAACG 59.197 38.462 14.19 0.00 41.91 3.18
340 341 5.886960 ACTTCCGAAGTACTACATAACGT 57.113 39.130 12.24 0.00 40.69 3.99
341 342 5.634896 ACTTCCGAAGTACTACATAACGTG 58.365 41.667 12.24 0.00 40.69 4.49
342 343 5.412594 ACTTCCGAAGTACTACATAACGTGA 59.587 40.000 12.24 0.00 40.69 4.35
343 344 5.878332 TCCGAAGTACTACATAACGTGAA 57.122 39.130 0.00 0.00 0.00 3.18
344 345 5.631026 TCCGAAGTACTACATAACGTGAAC 58.369 41.667 0.00 0.00 0.00 3.18
345 346 5.181056 TCCGAAGTACTACATAACGTGAACA 59.819 40.000 0.00 0.00 0.00 3.18
346 347 6.032094 CCGAAGTACTACATAACGTGAACAT 58.968 40.000 0.00 0.00 0.00 2.71
347 348 6.529125 CCGAAGTACTACATAACGTGAACATT 59.471 38.462 0.00 0.00 0.00 2.71
348 349 7.062605 CCGAAGTACTACATAACGTGAACATTT 59.937 37.037 0.00 0.00 0.00 2.32
349 350 8.430063 CGAAGTACTACATAACGTGAACATTTT 58.570 33.333 0.00 0.00 0.00 1.82
350 351 9.525007 GAAGTACTACATAACGTGAACATTTTG 57.475 33.333 0.00 0.00 0.00 2.44
351 352 8.597662 AGTACTACATAACGTGAACATTTTGT 57.402 30.769 0.00 0.00 0.00 2.83
352 353 9.048446 AGTACTACATAACGTGAACATTTTGTT 57.952 29.630 0.00 0.00 44.37 2.83
353 354 9.098746 GTACTACATAACGTGAACATTTTGTTG 57.901 33.333 0.00 0.00 41.28 3.33
354 355 7.921787 ACTACATAACGTGAACATTTTGTTGA 58.078 30.769 0.00 0.00 41.28 3.18
355 356 8.067784 ACTACATAACGTGAACATTTTGTTGAG 58.932 33.333 0.00 0.00 41.28 3.02
356 357 7.022055 ACATAACGTGAACATTTTGTTGAGA 57.978 32.000 0.00 0.00 41.28 3.27
357 358 7.476667 ACATAACGTGAACATTTTGTTGAGAA 58.523 30.769 0.00 0.00 41.28 2.87
358 359 7.971168 ACATAACGTGAACATTTTGTTGAGAAA 59.029 29.630 0.00 0.00 41.28 2.52
359 360 6.626199 AACGTGAACATTTTGTTGAGAAAC 57.374 33.333 0.00 0.00 41.28 2.78
360 361 5.949735 ACGTGAACATTTTGTTGAGAAACT 58.050 33.333 0.00 0.00 41.28 2.66
361 362 6.386654 ACGTGAACATTTTGTTGAGAAACTT 58.613 32.000 0.00 0.00 41.28 2.66
362 363 6.526674 ACGTGAACATTTTGTTGAGAAACTTC 59.473 34.615 0.00 0.00 41.28 3.01
363 364 6.020678 CGTGAACATTTTGTTGAGAAACTTCC 60.021 38.462 0.00 0.00 41.28 3.46
364 365 6.020678 GTGAACATTTTGTTGAGAAACTTCCG 60.021 38.462 0.00 0.00 41.28 4.30
365 366 5.828299 ACATTTTGTTGAGAAACTTCCGA 57.172 34.783 0.00 0.00 0.00 4.55
366 367 6.202516 ACATTTTGTTGAGAAACTTCCGAA 57.797 33.333 0.00 0.00 0.00 4.30
367 368 6.265577 ACATTTTGTTGAGAAACTTCCGAAG 58.734 36.000 6.59 6.59 0.00 3.79
368 369 5.890424 TTTTGTTGAGAAACTTCCGAAGT 57.110 34.783 8.03 8.03 45.46 3.01
369 370 6.988622 TTTTGTTGAGAAACTTCCGAAGTA 57.011 33.333 14.19 0.00 41.91 2.24
370 371 5.978934 TTGTTGAGAAACTTCCGAAGTAC 57.021 39.130 14.19 11.23 41.91 2.73
371 372 5.013568 TGTTGAGAAACTTCCGAAGTACA 57.986 39.130 14.19 10.56 41.91 2.90
372 373 5.607477 TGTTGAGAAACTTCCGAAGTACAT 58.393 37.500 14.19 4.27 41.91 2.29
373 374 6.751157 TGTTGAGAAACTTCCGAAGTACATA 58.249 36.000 14.19 3.31 41.91 2.29
374 375 7.211573 TGTTGAGAAACTTCCGAAGTACATAA 58.788 34.615 14.19 8.13 41.91 1.90
375 376 7.170320 TGTTGAGAAACTTCCGAAGTACATAAC 59.830 37.037 14.19 16.73 41.91 1.89
376 377 5.860182 TGAGAAACTTCCGAAGTACATAACG 59.140 40.000 14.19 0.00 41.91 3.18
377 378 6.017400 AGAAACTTCCGAAGTACATAACGA 57.983 37.500 14.19 0.00 41.91 3.85
378 379 6.628185 AGAAACTTCCGAAGTACATAACGAT 58.372 36.000 14.19 0.00 41.91 3.73
379 380 7.765307 AGAAACTTCCGAAGTACATAACGATA 58.235 34.615 14.19 0.00 41.91 2.92
380 381 7.699812 AGAAACTTCCGAAGTACATAACGATAC 59.300 37.037 14.19 0.00 41.91 2.24
381 382 6.441093 ACTTCCGAAGTACATAACGATACA 57.559 37.500 12.24 0.00 40.69 2.29
382 383 6.855836 ACTTCCGAAGTACATAACGATACAA 58.144 36.000 12.24 0.00 40.69 2.41
386 387 5.911280 CCGAAGTACATAACGATACAACGAT 59.089 40.000 0.00 0.00 37.03 3.73
391 392 6.847792 AGTACATAACGATACAACGATACGTG 59.152 38.462 0.00 0.00 39.99 4.49
404 405 3.985925 ACGATACGTGTTGAGAAACTTCC 59.014 43.478 6.54 0.00 39.18 3.46
405 406 3.059044 CGATACGTGTTGAGAAACTTCCG 59.941 47.826 0.00 0.00 0.00 4.30
407 408 2.896168 ACGTGTTGAGAAACTTCCGAA 58.104 42.857 0.00 0.00 0.00 4.30
408 409 2.864343 ACGTGTTGAGAAACTTCCGAAG 59.136 45.455 6.59 6.59 0.00 3.79
435 436 6.630444 TCTGACTCTATAAACGATGGGTAC 57.370 41.667 0.00 0.00 0.00 3.34
451 452 3.136443 TGGGTACATCACATCTTGATCCC 59.864 47.826 0.00 3.56 43.68 3.85
452 453 3.136443 GGGTACATCACATCTTGATCCCA 59.864 47.826 0.00 0.00 43.68 4.37
453 454 4.384056 GGTACATCACATCTTGATCCCAG 58.616 47.826 0.00 0.00 43.68 4.45
454 455 3.572632 ACATCACATCTTGATCCCAGG 57.427 47.619 0.00 0.00 43.68 4.45
455 456 2.174210 ACATCACATCTTGATCCCAGGG 59.826 50.000 0.00 0.00 43.68 4.45
456 457 2.268796 TCACATCTTGATCCCAGGGA 57.731 50.000 11.90 11.90 35.55 4.20
457 458 2.780414 TCACATCTTGATCCCAGGGAT 58.220 47.619 22.40 22.40 46.28 3.85
473 474 4.256180 ATCGATCTTGGGCGGGCC 62.256 66.667 14.65 14.65 0.00 5.80
490 491 2.272146 CGGGTAGCCACTGCCAAT 59.728 61.111 12.31 0.00 38.00 3.16
517 523 3.443045 CAACCATGGAGCCACGCC 61.443 66.667 21.47 0.00 0.00 5.68
519 525 3.628646 AACCATGGAGCCACGCCTC 62.629 63.158 21.47 0.00 0.00 4.70
526 532 4.421479 AGCCACGCCTCGTCTTCG 62.421 66.667 0.00 0.00 38.32 3.79
537 543 1.006102 CGTCTTCGTCTGCAGGGTT 60.006 57.895 15.13 0.00 0.00 4.11
552 558 3.259123 GCAGGGTTTTTGGATGATTCAGT 59.741 43.478 0.00 0.00 0.00 3.41
554 560 5.232463 CAGGGTTTTTGGATGATTCAGTTG 58.768 41.667 0.00 0.00 0.00 3.16
564 570 3.980646 TGATTCAGTTGGTTTTGACCG 57.019 42.857 0.00 0.00 0.00 4.79
567 573 4.273969 TGATTCAGTTGGTTTTGACCGTAC 59.726 41.667 0.00 0.00 0.00 3.67
571 577 0.179936 TTGGTTTTGACCGTACCCGT 59.820 50.000 0.00 0.00 0.00 5.28
576 582 3.367910 GGTTTTGACCGTACCCGTATGTA 60.368 47.826 0.00 0.00 0.00 2.29
600 606 2.202388 CAATCGGTTGCTGCTGCG 60.202 61.111 11.21 0.00 43.34 5.18
601 607 4.107051 AATCGGTTGCTGCTGCGC 62.107 61.111 11.21 0.00 43.34 6.09
622 631 2.088950 TTTTGTAGGCAGCTCCGTAC 57.911 50.000 0.39 0.39 40.77 3.67
623 632 0.108992 TTTGTAGGCAGCTCCGTACG 60.109 55.000 8.69 8.69 40.77 3.67
624 633 1.246056 TTGTAGGCAGCTCCGTACGT 61.246 55.000 15.21 0.00 40.77 3.57
625 634 0.392863 TGTAGGCAGCTCCGTACGTA 60.393 55.000 15.21 0.00 40.77 3.57
694 703 3.511146 GGTGATCAAAGGAAGATGGCAAA 59.489 43.478 0.00 0.00 0.00 3.68
695 704 4.161001 GGTGATCAAAGGAAGATGGCAAAT 59.839 41.667 0.00 0.00 0.00 2.32
696 705 5.337813 GGTGATCAAAGGAAGATGGCAAATT 60.338 40.000 0.00 0.00 0.00 1.82
698 707 5.718130 TGATCAAAGGAAGATGGCAAATTCT 59.282 36.000 12.88 0.00 0.00 2.40
699 708 5.649782 TCAAAGGAAGATGGCAAATTCTC 57.350 39.130 12.88 5.62 0.00 2.87
700 709 5.078949 TCAAAGGAAGATGGCAAATTCTCA 58.921 37.500 12.88 0.00 0.00 3.27
702 711 4.313020 AGGAAGATGGCAAATTCTCAGT 57.687 40.909 12.88 0.00 0.00 3.41
703 712 4.268359 AGGAAGATGGCAAATTCTCAGTC 58.732 43.478 12.88 0.00 0.00 3.51
705 714 4.643784 GGAAGATGGCAAATTCTCAGTCAT 59.356 41.667 12.88 0.00 0.00 3.06
706 715 5.221009 GGAAGATGGCAAATTCTCAGTCATC 60.221 44.000 12.88 0.00 42.95 2.92
707 716 5.113446 AGATGGCAAATTCTCAGTCATCT 57.887 39.130 3.17 3.17 46.56 2.90
709 718 4.025040 TGGCAAATTCTCAGTCATCTGT 57.975 40.909 0.00 0.00 41.91 3.41
710 719 4.005650 TGGCAAATTCTCAGTCATCTGTC 58.994 43.478 0.00 0.00 41.91 3.51
711 720 4.005650 GGCAAATTCTCAGTCATCTGTCA 58.994 43.478 0.00 0.00 41.91 3.58
712 721 4.456911 GGCAAATTCTCAGTCATCTGTCAA 59.543 41.667 0.00 0.00 41.91 3.18
713 722 5.388944 GCAAATTCTCAGTCATCTGTCAAC 58.611 41.667 0.00 0.00 41.91 3.18
714 723 5.180868 GCAAATTCTCAGTCATCTGTCAACT 59.819 40.000 0.00 0.00 41.91 3.16
715 724 6.293845 GCAAATTCTCAGTCATCTGTCAACTT 60.294 38.462 0.00 0.00 41.91 2.66
716 725 7.296660 CAAATTCTCAGTCATCTGTCAACTTC 58.703 38.462 0.00 0.00 41.91 3.01
718 727 4.876125 TCTCAGTCATCTGTCAACTTCAC 58.124 43.478 0.00 0.00 41.91 3.18
719 728 4.342092 TCTCAGTCATCTGTCAACTTCACA 59.658 41.667 0.00 0.00 41.91 3.58
722 731 5.525012 TCAGTCATCTGTCAACTTCACAAAG 59.475 40.000 0.00 0.00 41.91 2.77
723 732 5.525012 CAGTCATCTGTCAACTTCACAAAGA 59.475 40.000 0.00 0.00 36.97 2.52
724 733 5.757320 AGTCATCTGTCAACTTCACAAAGAG 59.243 40.000 0.00 0.00 36.30 2.85
725 734 5.525378 GTCATCTGTCAACTTCACAAAGAGT 59.475 40.000 0.00 0.00 36.30 3.24
788 805 3.822996 TCGTCGATTCAGAACTTCAGAC 58.177 45.455 0.00 0.00 0.00 3.51
813 830 6.035866 CGTAAGTAACAACTAACAACACACCA 59.964 38.462 0.00 0.00 0.00 4.17
815 832 6.431198 AGTAACAACTAACAACACACCAAG 57.569 37.500 0.00 0.00 0.00 3.61
816 833 5.941647 AGTAACAACTAACAACACACCAAGT 59.058 36.000 0.00 0.00 0.00 3.16
841 858 2.690497 TCAAATCCAAAAGTTGTGCCGA 59.310 40.909 0.00 0.00 0.00 5.54
856 873 1.300233 CCGACCATCTAGAAGCGGC 60.300 63.158 11.31 0.00 31.80 6.53
873 890 3.874873 CGAACTCGCATTCAGCCA 58.125 55.556 0.38 0.00 41.38 4.75
956 974 0.944311 AGTTGCTAGTCGGCACAACG 60.944 55.000 12.79 0.00 42.27 4.10
974 992 1.874562 CGACCACGTACAAGTAGTCG 58.125 55.000 7.27 7.27 45.89 4.18
982 1000 1.069022 GTACAAGTAGTCGTCACCGCA 60.069 52.381 0.00 0.00 0.00 5.69
986 1005 4.771356 TAGTCGTCACCGCAGCGC 62.771 66.667 10.07 0.00 0.00 5.92
990 1009 4.476410 CGTCACCGCAGCGCTCTA 62.476 66.667 7.13 0.00 0.00 2.43
991 1010 2.105128 GTCACCGCAGCGCTCTAT 59.895 61.111 7.13 0.00 0.00 1.98
1016 1035 4.729918 GACCCCAGCCACAGCCAG 62.730 72.222 0.00 0.00 41.25 4.85
1018 1037 3.736224 CCCCAGCCACAGCCAGAT 61.736 66.667 0.00 0.00 41.25 2.90
1019 1038 2.124403 CCCAGCCACAGCCAGATC 60.124 66.667 0.00 0.00 41.25 2.75
1020 1039 2.124403 CCAGCCACAGCCAGATCC 60.124 66.667 0.00 0.00 41.25 3.36
1021 1040 2.513204 CAGCCACAGCCAGATCCG 60.513 66.667 0.00 0.00 41.25 4.18
1060 1081 1.965930 GTGAGCATGGCGTCCAACA 60.966 57.895 2.68 0.19 36.95 3.33
1264 1297 2.111043 CCACGGCCACAGACAAGT 59.889 61.111 2.24 0.00 0.00 3.16
1557 1591 1.003355 CTGCCACCACCTCGTCATT 60.003 57.895 0.00 0.00 0.00 2.57
1959 2015 3.384789 CCAAGGAGATGTTCGACAGGATA 59.615 47.826 0.00 0.00 0.00 2.59
2037 2098 2.249309 CAGCTTTGTGTGTCGCGG 59.751 61.111 6.13 0.00 0.00 6.46
2071 2132 7.936847 ACCTACTGAAATAAATGGATTGCGATA 59.063 33.333 0.00 0.00 0.00 2.92
2072 2133 8.783093 CCTACTGAAATAAATGGATTGCGATAA 58.217 33.333 0.00 0.00 0.00 1.75
2114 2175 4.331968 TGGATAATTTTGCGGAGTGTCTT 58.668 39.130 0.00 0.00 0.00 3.01
2115 2176 5.492895 TGGATAATTTTGCGGAGTGTCTTA 58.507 37.500 0.00 0.00 0.00 2.10
2116 2177 6.119536 TGGATAATTTTGCGGAGTGTCTTAT 58.880 36.000 0.00 0.00 0.00 1.73
2117 2178 6.260050 TGGATAATTTTGCGGAGTGTCTTATC 59.740 38.462 0.00 0.00 0.00 1.75
2118 2179 6.260050 GGATAATTTTGCGGAGTGTCTTATCA 59.740 38.462 0.00 0.00 0.00 2.15
2119 2180 7.041098 GGATAATTTTGCGGAGTGTCTTATCAT 60.041 37.037 0.00 0.00 0.00 2.45
2120 2181 8.902540 ATAATTTTGCGGAGTGTCTTATCATA 57.097 30.769 0.00 0.00 0.00 2.15
2121 2182 6.604735 ATTTTGCGGAGTGTCTTATCATAC 57.395 37.500 0.00 0.00 0.00 2.39
2122 2183 3.728076 TGCGGAGTGTCTTATCATACC 57.272 47.619 0.00 0.00 0.00 2.73
2153 2214 5.284861 TCTCGCCTATTATGCTTTGGTTA 57.715 39.130 0.00 0.00 0.00 2.85
2155 2216 6.116806 TCTCGCCTATTATGCTTTGGTTAAA 58.883 36.000 0.00 0.00 0.00 1.52
2157 2218 7.284489 TCTCGCCTATTATGCTTTGGTTAAATT 59.716 33.333 0.00 0.00 0.00 1.82
2158 2219 7.777095 TCGCCTATTATGCTTTGGTTAAATTT 58.223 30.769 0.00 0.00 0.00 1.82
2159 2220 8.254508 TCGCCTATTATGCTTTGGTTAAATTTT 58.745 29.630 0.00 0.00 0.00 1.82
2160 2221 8.878769 CGCCTATTATGCTTTGGTTAAATTTTT 58.121 29.630 0.00 0.00 0.00 1.94
2204 2268 7.888209 CGTTTCTCATTTATATCATAAGCGTCG 59.112 37.037 0.00 0.00 0.00 5.12
2221 2290 3.484229 GCGTCGTAGTACAAGTCACGTAT 60.484 47.826 0.38 0.00 35.91 3.06
2227 2296 6.018751 TCGTAGTACAAGTCACGTATACATCC 60.019 42.308 3.32 0.00 35.91 3.51
2306 2383 6.294675 CCAGCCAATTACAATCAAGACTGAAA 60.295 38.462 0.00 0.00 34.49 2.69
2329 2406 4.307032 AACATCTAGGCTTGACACCAAT 57.693 40.909 0.00 0.00 0.00 3.16
2330 2407 3.614092 ACATCTAGGCTTGACACCAATG 58.386 45.455 0.00 0.00 0.00 2.82
2348 2439 3.215568 CTGGCGCCACCACAACAA 61.216 61.111 29.03 0.00 46.36 2.83
2359 2450 4.006319 CCACCACAACAACCAACAAAAAT 58.994 39.130 0.00 0.00 0.00 1.82
2370 2461 6.869388 ACAACCAACAAAAATAAAAGTGACGT 59.131 30.769 0.00 0.00 0.00 4.34
2398 2489 4.467062 CAGCTGAGCTCGACGCGA 62.467 66.667 15.93 2.20 45.59 5.87
2447 2553 5.335661 GCTCACCAAAGACGAAACCATTATT 60.336 40.000 0.00 0.00 0.00 1.40
2474 2581 0.252197 GAATTAGACCGGGGCACACT 59.748 55.000 6.32 0.00 0.00 3.55
2513 2621 3.329889 AGATCTGGCACCCCGCAA 61.330 61.111 0.00 0.00 45.17 4.85
2515 2623 3.628646 GATCTGGCACCCCGCAAGT 62.629 63.158 0.00 0.00 42.95 3.16
2516 2624 3.210012 ATCTGGCACCCCGCAAGTT 62.210 57.895 0.00 0.00 42.95 2.66
2517 2625 1.847798 ATCTGGCACCCCGCAAGTTA 61.848 55.000 0.00 0.00 42.95 2.24
2518 2626 2.033448 TGGCACCCCGCAAGTTAG 59.967 61.111 0.00 0.00 45.17 2.34
2520 2628 1.602605 GGCACCCCGCAAGTTAGTT 60.603 57.895 0.00 0.00 45.17 2.24
2523 2631 0.250553 CACCCCGCAAGTTAGTTGGA 60.251 55.000 1.75 0.00 36.56 3.53
2550 2661 3.808728 AGGAAACCATACATGTCATCCG 58.191 45.455 0.00 0.00 0.00 4.18
2632 2746 1.264749 TGCACCCGCTTCTGGACTAT 61.265 55.000 0.00 0.00 39.64 2.12
2674 2788 1.132640 GGAGCAAACGATGTCGCAC 59.867 57.895 1.77 0.00 44.43 5.34
2747 2864 4.336889 TCCTTACTTGAACAGACTGGTG 57.663 45.455 7.51 0.00 0.00 4.17
2762 2879 2.091333 ACTGGTGTTCAAACCCATCCTT 60.091 45.455 4.30 0.00 39.70 3.36
2816 2934 9.972106 AAAGGATCTGAAGAATCTTTATTCAGT 57.028 29.630 18.70 10.16 46.43 3.41
2832 2950 0.813610 CAGTGTTGTTCTCGCCACCA 60.814 55.000 0.00 0.00 0.00 4.17
2891 3011 5.104485 AGACTACGAGGGCCTAAAAATGATT 60.104 40.000 5.73 0.00 0.00 2.57
2895 3015 3.947834 CGAGGGCCTAAAAATGATTCACT 59.052 43.478 5.73 0.00 0.00 3.41
2915 3035 3.253061 TGTGGATCCGGCAACCCA 61.253 61.111 7.39 0.00 0.00 4.51
2928 3052 0.253044 CAACCCACCTCACCATCGAT 59.747 55.000 0.00 0.00 0.00 3.59
2942 3066 2.957060 TCGATGACCGAGGTTGTCT 58.043 52.632 0.00 0.00 43.23 3.41
3031 3164 7.119116 GCTTTTCTTTCTTTGGGTTGAAGAAAA 59.881 33.333 16.63 16.63 46.54 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 8.272889 AGTTTTATTAGGGGATTTGTAGAGGTC 58.727 37.037 0.00 0.00 0.00 3.85
3 4 8.171337 AGTTTTATTAGGGGATTTGTAGAGGT 57.829 34.615 0.00 0.00 0.00 3.85
4 5 9.121658 GAAGTTTTATTAGGGGATTTGTAGAGG 57.878 37.037 0.00 0.00 0.00 3.69
5 6 9.907229 AGAAGTTTTATTAGGGGATTTGTAGAG 57.093 33.333 0.00 0.00 0.00 2.43
8 9 9.603921 CGTAGAAGTTTTATTAGGGGATTTGTA 57.396 33.333 0.00 0.00 0.00 2.41
9 10 7.066645 GCGTAGAAGTTTTATTAGGGGATTTGT 59.933 37.037 0.00 0.00 0.00 2.83
10 11 7.066525 TGCGTAGAAGTTTTATTAGGGGATTTG 59.933 37.037 0.00 0.00 0.00 2.32
11 12 7.114095 TGCGTAGAAGTTTTATTAGGGGATTT 58.886 34.615 0.00 0.00 0.00 2.17
12 13 6.655930 TGCGTAGAAGTTTTATTAGGGGATT 58.344 36.000 0.00 0.00 0.00 3.01
13 14 6.243216 TGCGTAGAAGTTTTATTAGGGGAT 57.757 37.500 0.00 0.00 0.00 3.85
14 15 5.395990 CCTGCGTAGAAGTTTTATTAGGGGA 60.396 44.000 0.53 0.00 0.00 4.81
15 16 4.814771 CCTGCGTAGAAGTTTTATTAGGGG 59.185 45.833 0.53 0.00 0.00 4.79
16 17 4.272748 GCCTGCGTAGAAGTTTTATTAGGG 59.727 45.833 0.53 0.00 0.00 3.53
17 18 4.025979 CGCCTGCGTAGAAGTTTTATTAGG 60.026 45.833 0.53 0.00 34.35 2.69
18 19 4.802039 TCGCCTGCGTAGAAGTTTTATTAG 59.198 41.667 11.68 0.00 40.74 1.73
19 20 4.563976 GTCGCCTGCGTAGAAGTTTTATTA 59.436 41.667 11.68 0.00 40.74 0.98
20 21 3.370061 GTCGCCTGCGTAGAAGTTTTATT 59.630 43.478 11.68 0.00 40.74 1.40
21 22 2.928116 GTCGCCTGCGTAGAAGTTTTAT 59.072 45.455 11.68 0.00 40.74 1.40
22 23 2.331194 GTCGCCTGCGTAGAAGTTTTA 58.669 47.619 11.68 0.00 40.74 1.52
23 24 1.145803 GTCGCCTGCGTAGAAGTTTT 58.854 50.000 11.68 0.00 40.74 2.43
24 25 0.669625 GGTCGCCTGCGTAGAAGTTT 60.670 55.000 11.68 0.00 40.74 2.66
25 26 1.080025 GGTCGCCTGCGTAGAAGTT 60.080 57.895 11.68 0.00 40.74 2.66
26 27 2.572284 GGTCGCCTGCGTAGAAGT 59.428 61.111 11.68 0.00 40.74 3.01
27 28 2.579787 CGGTCGCCTGCGTAGAAG 60.580 66.667 11.68 0.00 40.74 2.85
28 29 2.807631 GAACGGTCGCCTGCGTAGAA 62.808 60.000 11.68 0.00 40.74 2.10
29 30 3.332493 GAACGGTCGCCTGCGTAGA 62.332 63.158 11.68 0.00 40.74 2.59
30 31 2.879462 GAACGGTCGCCTGCGTAG 60.879 66.667 11.68 6.75 40.74 3.51
31 32 2.495366 AATGAACGGTCGCCTGCGTA 62.495 55.000 11.68 0.00 40.74 4.42
32 33 3.876589 AATGAACGGTCGCCTGCGT 62.877 57.895 11.68 0.00 40.74 5.24
33 34 2.182614 AAAATGAACGGTCGCCTGCG 62.183 55.000 4.92 4.92 41.35 5.18
34 35 0.729140 CAAAATGAACGGTCGCCTGC 60.729 55.000 0.00 0.00 0.00 4.85
35 36 0.591170 ACAAAATGAACGGTCGCCTG 59.409 50.000 0.00 0.00 0.00 4.85
36 37 1.314730 AACAAAATGAACGGTCGCCT 58.685 45.000 0.00 0.00 0.00 5.52
37 38 2.128367 AAACAAAATGAACGGTCGCC 57.872 45.000 0.00 0.00 0.00 5.54
38 39 7.500807 AATAATAAACAAAATGAACGGTCGC 57.499 32.000 0.00 0.00 0.00 5.19
61 62 9.732130 CCCCAAAAATTAAAACAGATCCATAAA 57.268 29.630 0.00 0.00 0.00 1.40
62 63 9.105844 TCCCCAAAAATTAAAACAGATCCATAA 57.894 29.630 0.00 0.00 0.00 1.90
63 64 8.536175 GTCCCCAAAAATTAAAACAGATCCATA 58.464 33.333 0.00 0.00 0.00 2.74
64 65 7.017056 TGTCCCCAAAAATTAAAACAGATCCAT 59.983 33.333 0.00 0.00 0.00 3.41
65 66 6.327626 TGTCCCCAAAAATTAAAACAGATCCA 59.672 34.615 0.00 0.00 0.00 3.41
66 67 6.764379 TGTCCCCAAAAATTAAAACAGATCC 58.236 36.000 0.00 0.00 0.00 3.36
121 122 9.874205 CCAGTGTTCAAAACATATTATGGAATT 57.126 29.630 8.48 0.00 44.35 2.17
122 123 9.253832 TCCAGTGTTCAAAACATATTATGGAAT 57.746 29.630 8.48 0.00 44.35 3.01
123 124 8.642935 TCCAGTGTTCAAAACATATTATGGAA 57.357 30.769 8.48 0.00 44.35 3.53
124 125 8.821686 ATCCAGTGTTCAAAACATATTATGGA 57.178 30.769 8.48 12.06 44.35 3.41
178 179 9.605955 CACGTTTTCAAATAGATGTACATGAAA 57.394 29.630 14.43 13.82 35.63 2.69
179 180 8.994170 TCACGTTTTCAAATAGATGTACATGAA 58.006 29.630 14.43 8.15 0.00 2.57
180 181 8.541133 TCACGTTTTCAAATAGATGTACATGA 57.459 30.769 14.43 1.28 0.00 3.07
181 182 9.773328 AATCACGTTTTCAAATAGATGTACATG 57.227 29.630 14.43 0.00 0.00 3.21
268 269 6.424883 TCTATAGAAACGCCCCCATTAAAAA 58.575 36.000 0.00 0.00 0.00 1.94
269 270 6.003859 TCTATAGAAACGCCCCCATTAAAA 57.996 37.500 0.00 0.00 0.00 1.52
270 271 5.633655 TCTATAGAAACGCCCCCATTAAA 57.366 39.130 0.00 0.00 0.00 1.52
271 272 5.514136 CCATCTATAGAAACGCCCCCATTAA 60.514 44.000 6.52 0.00 0.00 1.40
272 273 4.019681 CCATCTATAGAAACGCCCCCATTA 60.020 45.833 6.52 0.00 0.00 1.90
273 274 3.244911 CCATCTATAGAAACGCCCCCATT 60.245 47.826 6.52 0.00 0.00 3.16
274 275 2.305927 CCATCTATAGAAACGCCCCCAT 59.694 50.000 6.52 0.00 0.00 4.00
275 276 1.697432 CCATCTATAGAAACGCCCCCA 59.303 52.381 6.52 0.00 0.00 4.96
276 277 1.003233 CCCATCTATAGAAACGCCCCC 59.997 57.143 6.52 0.00 0.00 5.40
277 278 1.003233 CCCCATCTATAGAAACGCCCC 59.997 57.143 6.52 0.00 0.00 5.80
278 279 1.975680 TCCCCATCTATAGAAACGCCC 59.024 52.381 6.52 0.00 0.00 6.13
279 280 2.367567 TGTCCCCATCTATAGAAACGCC 59.632 50.000 6.52 0.00 0.00 5.68
280 281 3.181469 TGTGTCCCCATCTATAGAAACGC 60.181 47.826 6.52 7.62 0.00 4.84
281 282 4.665833 TGTGTCCCCATCTATAGAAACG 57.334 45.455 6.52 0.00 0.00 3.60
282 283 7.881775 AAAATGTGTCCCCATCTATAGAAAC 57.118 36.000 6.52 1.75 0.00 2.78
290 291 9.265862 TCAAAAATATAAAATGTGTCCCCATCT 57.734 29.630 0.00 0.00 0.00 2.90
291 292 9.883142 TTCAAAAATATAAAATGTGTCCCCATC 57.117 29.630 0.00 0.00 0.00 3.51
293 294 9.495572 GTTTCAAAAATATAAAATGTGTCCCCA 57.504 29.630 0.00 0.00 0.00 4.96
294 295 9.719355 AGTTTCAAAAATATAAAATGTGTCCCC 57.281 29.630 0.00 0.00 0.00 4.81
308 309 9.545105 TGTAGTACTTCGGAAGTTTCAAAAATA 57.455 29.630 26.71 9.89 42.81 1.40
309 310 8.441312 TGTAGTACTTCGGAAGTTTCAAAAAT 57.559 30.769 26.71 10.82 42.81 1.82
310 311 7.846644 TGTAGTACTTCGGAAGTTTCAAAAA 57.153 32.000 26.71 5.97 42.81 1.94
311 312 9.545105 TTATGTAGTACTTCGGAAGTTTCAAAA 57.455 29.630 26.71 6.69 42.81 2.44
312 313 8.981647 GTTATGTAGTACTTCGGAAGTTTCAAA 58.018 33.333 26.71 12.01 42.81 2.69
313 314 7.326789 CGTTATGTAGTACTTCGGAAGTTTCAA 59.673 37.037 26.71 7.79 42.81 2.69
314 315 6.803320 CGTTATGTAGTACTTCGGAAGTTTCA 59.197 38.462 26.71 19.19 42.81 2.69
315 316 6.803807 ACGTTATGTAGTACTTCGGAAGTTTC 59.196 38.462 26.71 19.28 42.81 2.78
316 317 6.583806 CACGTTATGTAGTACTTCGGAAGTTT 59.416 38.462 26.71 17.77 42.81 2.66
317 318 6.072508 TCACGTTATGTAGTACTTCGGAAGTT 60.073 38.462 26.71 13.62 42.81 2.66
318 319 5.412594 TCACGTTATGTAGTACTTCGGAAGT 59.587 40.000 25.15 25.15 45.40 3.01
319 320 5.872635 TCACGTTATGTAGTACTTCGGAAG 58.127 41.667 15.96 15.96 0.00 3.46
320 321 5.878332 TCACGTTATGTAGTACTTCGGAA 57.122 39.130 0.00 0.00 0.00 4.30
321 322 5.181056 TGTTCACGTTATGTAGTACTTCGGA 59.819 40.000 0.00 0.00 0.00 4.55
322 323 5.393124 TGTTCACGTTATGTAGTACTTCGG 58.607 41.667 0.00 0.00 0.00 4.30
323 324 7.502177 AATGTTCACGTTATGTAGTACTTCG 57.498 36.000 0.00 4.12 0.00 3.79
324 325 9.525007 CAAAATGTTCACGTTATGTAGTACTTC 57.475 33.333 0.00 0.00 0.00 3.01
325 326 9.048446 ACAAAATGTTCACGTTATGTAGTACTT 57.952 29.630 0.00 0.00 0.00 2.24
326 327 8.597662 ACAAAATGTTCACGTTATGTAGTACT 57.402 30.769 0.00 0.00 0.00 2.73
327 328 9.098746 CAACAAAATGTTCACGTTATGTAGTAC 57.901 33.333 0.00 0.00 38.77 2.73
328 329 9.043079 TCAACAAAATGTTCACGTTATGTAGTA 57.957 29.630 0.00 0.00 38.77 1.82
329 330 7.921787 TCAACAAAATGTTCACGTTATGTAGT 58.078 30.769 0.00 0.00 38.77 2.73
330 331 8.279800 TCTCAACAAAATGTTCACGTTATGTAG 58.720 33.333 0.00 0.00 38.77 2.74
331 332 8.144155 TCTCAACAAAATGTTCACGTTATGTA 57.856 30.769 0.00 0.00 38.77 2.29
332 333 7.022055 TCTCAACAAAATGTTCACGTTATGT 57.978 32.000 0.00 0.00 38.77 2.29
333 334 7.906611 TTCTCAACAAAATGTTCACGTTATG 57.093 32.000 0.00 0.00 38.77 1.90
334 335 8.188139 AGTTTCTCAACAAAATGTTCACGTTAT 58.812 29.630 0.00 0.00 38.77 1.89
335 336 7.531716 AGTTTCTCAACAAAATGTTCACGTTA 58.468 30.769 0.00 0.00 38.77 3.18
336 337 6.386654 AGTTTCTCAACAAAATGTTCACGTT 58.613 32.000 0.00 0.00 38.77 3.99
337 338 5.949735 AGTTTCTCAACAAAATGTTCACGT 58.050 33.333 0.00 0.00 38.77 4.49
338 339 6.020678 GGAAGTTTCTCAACAAAATGTTCACG 60.021 38.462 0.00 0.00 38.77 4.35
339 340 6.020678 CGGAAGTTTCTCAACAAAATGTTCAC 60.021 38.462 0.00 0.00 38.77 3.18
340 341 6.033341 CGGAAGTTTCTCAACAAAATGTTCA 58.967 36.000 0.00 0.00 38.77 3.18
341 342 6.262601 TCGGAAGTTTCTCAACAAAATGTTC 58.737 36.000 0.00 0.00 38.77 3.18
342 343 6.202516 TCGGAAGTTTCTCAACAAAATGTT 57.797 33.333 0.00 0.00 42.08 2.71
343 344 5.828299 TCGGAAGTTTCTCAACAAAATGT 57.172 34.783 0.00 0.00 35.05 2.71
344 345 6.265577 ACTTCGGAAGTTTCTCAACAAAATG 58.734 36.000 17.38 0.00 39.04 2.32
345 346 6.451064 ACTTCGGAAGTTTCTCAACAAAAT 57.549 33.333 17.38 0.00 39.04 1.82
346 347 5.890424 ACTTCGGAAGTTTCTCAACAAAA 57.110 34.783 17.38 0.00 39.04 2.44
347 348 5.875910 TGTACTTCGGAAGTTTCTCAACAAA 59.124 36.000 26.71 3.81 42.81 2.83
348 349 5.421277 TGTACTTCGGAAGTTTCTCAACAA 58.579 37.500 26.71 4.53 42.81 2.83
349 350 5.013568 TGTACTTCGGAAGTTTCTCAACA 57.986 39.130 26.71 19.96 42.81 3.33
350 351 7.508134 GTTATGTACTTCGGAAGTTTCTCAAC 58.492 38.462 26.71 17.84 42.81 3.18
351 352 6.364165 CGTTATGTACTTCGGAAGTTTCTCAA 59.636 38.462 26.71 12.81 42.81 3.02
352 353 5.860182 CGTTATGTACTTCGGAAGTTTCTCA 59.140 40.000 26.71 19.48 42.81 3.27
353 354 6.088824 TCGTTATGTACTTCGGAAGTTTCTC 58.911 40.000 26.71 15.39 42.81 2.87
354 355 6.017400 TCGTTATGTACTTCGGAAGTTTCT 57.983 37.500 26.71 14.28 42.81 2.52
355 356 6.882458 ATCGTTATGTACTTCGGAAGTTTC 57.118 37.500 26.71 19.56 42.81 2.78
356 357 7.315142 TGTATCGTTATGTACTTCGGAAGTTT 58.685 34.615 26.71 15.04 42.81 2.66
357 358 6.855836 TGTATCGTTATGTACTTCGGAAGTT 58.144 36.000 26.71 12.93 42.81 2.66
358 359 6.441093 TGTATCGTTATGTACTTCGGAAGT 57.559 37.500 25.15 25.15 45.40 3.01
359 360 6.075728 CGTTGTATCGTTATGTACTTCGGAAG 60.076 42.308 15.96 15.96 0.00 3.46
360 361 5.738693 CGTTGTATCGTTATGTACTTCGGAA 59.261 40.000 0.00 0.00 0.00 4.30
361 362 5.064579 TCGTTGTATCGTTATGTACTTCGGA 59.935 40.000 0.00 0.00 0.00 4.55
362 363 5.265477 TCGTTGTATCGTTATGTACTTCGG 58.735 41.667 0.00 0.00 0.00 4.30
363 364 6.964677 ATCGTTGTATCGTTATGTACTTCG 57.035 37.500 0.00 0.00 0.00 3.79
364 365 7.584123 ACGTATCGTTGTATCGTTATGTACTTC 59.416 37.037 0.00 0.00 36.35 3.01
365 366 7.374228 CACGTATCGTTGTATCGTTATGTACTT 59.626 37.037 0.00 0.00 38.32 2.24
366 367 6.847792 CACGTATCGTTGTATCGTTATGTACT 59.152 38.462 0.00 0.00 38.32 2.73
367 368 6.628856 ACACGTATCGTTGTATCGTTATGTAC 59.371 38.462 0.00 0.00 38.32 2.90
368 369 6.714492 ACACGTATCGTTGTATCGTTATGTA 58.286 36.000 0.00 0.00 38.32 2.29
369 370 5.572211 ACACGTATCGTTGTATCGTTATGT 58.428 37.500 0.00 0.00 38.32 2.29
370 371 6.195060 TCAACACGTATCGTTGTATCGTTATG 59.805 38.462 14.63 0.00 43.40 1.90
371 372 6.257423 TCAACACGTATCGTTGTATCGTTAT 58.743 36.000 14.63 0.00 43.40 1.89
372 373 5.626211 TCAACACGTATCGTTGTATCGTTA 58.374 37.500 14.63 0.00 43.40 3.18
373 374 4.475028 TCAACACGTATCGTTGTATCGTT 58.525 39.130 14.63 0.00 43.40 3.85
374 375 4.082274 TCAACACGTATCGTTGTATCGT 57.918 40.909 14.63 0.00 43.40 3.73
375 376 4.336932 TCTCAACACGTATCGTTGTATCG 58.663 43.478 14.63 5.30 43.40 2.92
376 377 6.307318 AGTTTCTCAACACGTATCGTTGTATC 59.693 38.462 14.63 5.44 43.40 2.24
377 378 6.154445 AGTTTCTCAACACGTATCGTTGTAT 58.846 36.000 14.63 0.00 43.40 2.29
378 379 5.522456 AGTTTCTCAACACGTATCGTTGTA 58.478 37.500 14.63 4.71 43.40 2.41
379 380 4.365723 AGTTTCTCAACACGTATCGTTGT 58.634 39.130 14.63 0.00 43.40 3.32
380 381 4.966850 AGTTTCTCAACACGTATCGTTG 57.033 40.909 10.18 10.18 44.11 4.10
381 382 4.446719 GGAAGTTTCTCAACACGTATCGTT 59.553 41.667 0.00 0.00 38.32 3.85
382 383 3.985925 GGAAGTTTCTCAACACGTATCGT 59.014 43.478 0.00 0.00 42.36 3.73
386 387 3.713858 TCGGAAGTTTCTCAACACGTA 57.286 42.857 0.00 0.00 35.05 3.57
404 405 9.108449 CATCGTTTATAGAGTCAGATAACTTCG 57.892 37.037 0.00 2.55 0.00 3.79
405 406 9.400638 CCATCGTTTATAGAGTCAGATAACTTC 57.599 37.037 0.00 0.00 0.00 3.01
407 408 7.506261 ACCCATCGTTTATAGAGTCAGATAACT 59.494 37.037 0.00 0.00 0.00 2.24
408 409 7.659186 ACCCATCGTTTATAGAGTCAGATAAC 58.341 38.462 0.00 0.00 0.00 1.89
410 411 7.940688 TGTACCCATCGTTTATAGAGTCAGATA 59.059 37.037 0.00 0.00 0.00 1.98
411 412 6.776116 TGTACCCATCGTTTATAGAGTCAGAT 59.224 38.462 0.00 0.00 0.00 2.90
412 413 6.124340 TGTACCCATCGTTTATAGAGTCAGA 58.876 40.000 0.00 0.00 0.00 3.27
413 414 6.387041 TGTACCCATCGTTTATAGAGTCAG 57.613 41.667 0.00 0.00 0.00 3.51
414 415 6.971726 ATGTACCCATCGTTTATAGAGTCA 57.028 37.500 0.00 0.00 0.00 3.41
451 452 1.301244 CGCCCAAGATCGATCCCTG 60.301 63.158 21.66 17.92 0.00 4.45
452 453 2.511452 CCGCCCAAGATCGATCCCT 61.511 63.158 21.66 6.79 0.00 4.20
453 454 2.031163 CCGCCCAAGATCGATCCC 59.969 66.667 21.66 0.00 0.00 3.85
454 455 2.031163 CCCGCCCAAGATCGATCC 59.969 66.667 21.66 5.21 0.00 3.36
455 456 2.666526 GCCCGCCCAAGATCGATC 60.667 66.667 17.91 17.91 0.00 3.69
456 457 4.256180 GGCCCGCCCAAGATCGAT 62.256 66.667 0.00 0.00 0.00 3.59
473 474 1.819632 GATTGGCAGTGGCTACCCG 60.820 63.158 18.53 0.00 40.87 5.28
490 491 2.282816 CATGGTTGGGGTTGGCGA 60.283 61.111 0.00 0.00 0.00 5.54
516 522 1.153939 CCTGCAGACGAAGACGAGG 60.154 63.158 17.39 0.00 42.66 4.63
517 523 1.153939 CCCTGCAGACGAAGACGAG 60.154 63.158 17.39 0.00 42.66 4.18
519 525 0.600255 AAACCCTGCAGACGAAGACG 60.600 55.000 17.39 0.00 45.75 4.18
526 532 2.238521 TCATCCAAAAACCCTGCAGAC 58.761 47.619 17.39 0.00 0.00 3.51
537 543 6.760770 GTCAAAACCAACTGAATCATCCAAAA 59.239 34.615 0.00 0.00 0.00 2.44
552 558 0.179936 ACGGGTACGGTCAAAACCAA 59.820 50.000 0.64 0.00 46.86 3.67
554 560 2.001872 CATACGGGTACGGTCAAAACC 58.998 52.381 0.00 0.00 46.48 3.27
564 570 5.616424 CGATTGCTAGAGTACATACGGGTAC 60.616 48.000 0.00 6.28 43.10 3.34
567 573 3.366070 CCGATTGCTAGAGTACATACGGG 60.366 52.174 0.00 0.00 33.96 5.28
596 602 3.317608 CTGCCTACAAAATGCGCAG 57.682 52.632 18.32 4.18 40.81 5.18
599 605 0.099436 GGAGCTGCCTACAAAATGCG 59.901 55.000 0.00 0.00 0.00 4.73
600 606 0.099436 CGGAGCTGCCTACAAAATGC 59.901 55.000 0.00 0.00 0.00 3.56
601 607 1.453155 ACGGAGCTGCCTACAAAATG 58.547 50.000 0.00 0.00 0.00 2.32
694 703 5.931146 GTGAAGTTGACAGATGACTGAGAAT 59.069 40.000 0.00 0.00 46.03 2.40
695 704 5.163416 TGTGAAGTTGACAGATGACTGAGAA 60.163 40.000 0.00 0.00 46.03 2.87
696 705 4.342092 TGTGAAGTTGACAGATGACTGAGA 59.658 41.667 0.00 0.00 46.03 3.27
698 707 4.670896 TGTGAAGTTGACAGATGACTGA 57.329 40.909 0.00 0.00 46.03 3.41
699 708 5.525012 TCTTTGTGAAGTTGACAGATGACTG 59.475 40.000 0.00 0.00 40.44 3.51
700 709 5.674525 TCTTTGTGAAGTTGACAGATGACT 58.325 37.500 0.00 0.00 34.41 3.41
702 711 5.674525 ACTCTTTGTGAAGTTGACAGATGA 58.325 37.500 0.00 0.00 34.41 2.92
703 712 5.998454 ACTCTTTGTGAAGTTGACAGATG 57.002 39.130 0.00 0.00 34.41 2.90
718 727 9.565213 CCTTCTATTTCTTATTTGCACTCTTTG 57.435 33.333 0.00 0.00 0.00 2.77
719 728 9.520515 TCCTTCTATTTCTTATTTGCACTCTTT 57.479 29.630 0.00 0.00 0.00 2.52
722 731 9.336171 AGATCCTTCTATTTCTTATTTGCACTC 57.664 33.333 0.00 0.00 0.00 3.51
723 732 9.118300 CAGATCCTTCTATTTCTTATTTGCACT 57.882 33.333 0.00 0.00 0.00 4.40
724 733 8.897752 ACAGATCCTTCTATTTCTTATTTGCAC 58.102 33.333 0.00 0.00 0.00 4.57
725 734 9.113838 GACAGATCCTTCTATTTCTTATTTGCA 57.886 33.333 0.00 0.00 0.00 4.08
726 735 9.336171 AGACAGATCCTTCTATTTCTTATTTGC 57.664 33.333 0.00 0.00 0.00 3.68
755 772 2.121116 ATCGACGATTACTTGCCTCG 57.879 50.000 4.05 0.00 38.34 4.63
788 805 6.035866 TGGTGTGTTGTTAGTTGTTACTTACG 59.964 38.462 0.00 0.00 36.86 3.18
799 816 5.736813 TGAACTACTTGGTGTGTTGTTAGT 58.263 37.500 0.00 0.00 34.60 2.24
800 817 6.671614 TTGAACTACTTGGTGTGTTGTTAG 57.328 37.500 0.00 0.00 34.60 2.34
801 818 7.201750 GGATTTGAACTACTTGGTGTGTTGTTA 60.202 37.037 0.00 0.00 34.60 2.41
802 819 5.968528 TTTGAACTACTTGGTGTGTTGTT 57.031 34.783 0.00 0.00 36.44 2.83
803 820 5.067283 GGATTTGAACTACTTGGTGTGTTGT 59.933 40.000 0.00 0.00 0.00 3.32
804 821 5.067153 TGGATTTGAACTACTTGGTGTGTTG 59.933 40.000 0.00 0.00 0.00 3.33
805 822 5.197451 TGGATTTGAACTACTTGGTGTGTT 58.803 37.500 0.00 0.00 0.00 3.32
806 823 4.787551 TGGATTTGAACTACTTGGTGTGT 58.212 39.130 0.00 0.00 0.00 3.72
807 824 5.766150 TTGGATTTGAACTACTTGGTGTG 57.234 39.130 0.00 0.00 0.00 3.82
808 825 6.379988 ACTTTTGGATTTGAACTACTTGGTGT 59.620 34.615 0.00 0.00 0.00 4.16
809 826 6.805713 ACTTTTGGATTTGAACTACTTGGTG 58.194 36.000 0.00 0.00 0.00 4.17
810 827 7.093509 ACAACTTTTGGATTTGAACTACTTGGT 60.094 33.333 0.00 0.00 34.12 3.67
811 828 7.222611 CACAACTTTTGGATTTGAACTACTTGG 59.777 37.037 0.00 0.00 34.12 3.61
813 830 6.756542 GCACAACTTTTGGATTTGAACTACTT 59.243 34.615 0.00 0.00 34.12 2.24
815 832 5.462068 GGCACAACTTTTGGATTTGAACTAC 59.538 40.000 0.00 0.00 34.12 2.73
816 833 5.596845 GGCACAACTTTTGGATTTGAACTA 58.403 37.500 0.00 0.00 34.12 2.24
841 858 0.179108 GTTCGCCGCTTCTAGATGGT 60.179 55.000 7.66 0.00 0.00 3.55
856 873 1.421485 GTGGCTGAATGCGAGTTCG 59.579 57.895 0.00 0.00 44.05 3.95
865 882 1.746615 AGCATTCGCGTGGCTGAAT 60.747 52.632 18.02 2.21 45.49 2.57
866 883 2.358615 AGCATTCGCGTGGCTGAA 60.359 55.556 18.02 0.00 45.49 3.02
956 974 2.224079 TGACGACTACTTGTACGTGGTC 59.776 50.000 0.00 7.16 40.65 4.02
958 976 2.578495 GTGACGACTACTTGTACGTGG 58.422 52.381 0.00 0.00 39.04 4.94
974 992 1.946650 GATAGAGCGCTGCGGTGAC 60.947 63.158 32.29 17.80 37.83 3.67
986 1005 2.080693 CTGGGGTCGATCGAGATAGAG 58.919 57.143 20.09 7.34 0.00 2.43
987 1006 1.882780 GCTGGGGTCGATCGAGATAGA 60.883 57.143 20.09 0.77 0.00 1.98
988 1007 0.523966 GCTGGGGTCGATCGAGATAG 59.476 60.000 20.09 14.94 0.00 2.08
989 1008 0.894184 GGCTGGGGTCGATCGAGATA 60.894 60.000 20.09 4.62 0.00 1.98
990 1009 2.203771 GGCTGGGGTCGATCGAGAT 61.204 63.158 20.09 0.00 0.00 2.75
991 1010 2.833582 GGCTGGGGTCGATCGAGA 60.834 66.667 20.09 1.91 0.00 4.04
1015 1034 2.813901 GCTGCTGCTCTCGGATCT 59.186 61.111 8.53 0.00 36.03 2.75
1060 1081 4.955774 GTTGTCGTCGGGTGCGGT 62.956 66.667 0.00 0.00 0.00 5.68
1255 1285 2.289072 CGATGACAGGGAACTTGTCTGT 60.289 50.000 11.85 0.00 43.50 3.41
1264 1297 1.741706 GACGTAGACGATGACAGGGAA 59.258 52.381 9.41 0.00 43.02 3.97
1869 1925 2.202544 GTCTCCAGCAGCTCGACG 60.203 66.667 0.00 0.00 0.00 5.12
1959 2015 3.852316 GCGTTAACGAAGGCGACT 58.148 55.556 31.03 0.00 43.02 4.18
2037 2098 2.552231 ATTTCAGTAGGTGGCGCCCC 62.552 60.000 26.77 24.16 38.26 5.80
2088 2149 3.192422 CACTCCGCAAAATTATCCAACCA 59.808 43.478 0.00 0.00 0.00 3.67
2089 2150 3.192633 ACACTCCGCAAAATTATCCAACC 59.807 43.478 0.00 0.00 0.00 3.77
2090 2151 4.156008 AGACACTCCGCAAAATTATCCAAC 59.844 41.667 0.00 0.00 0.00 3.77
2093 2154 4.965119 AAGACACTCCGCAAAATTATCC 57.035 40.909 0.00 0.00 0.00 2.59
2104 2165 3.609644 GCGAGGTATGATAAGACACTCCG 60.610 52.174 0.00 0.00 0.00 4.63
2114 2175 1.535896 GAGAGCACGCGAGGTATGATA 59.464 52.381 15.93 0.00 0.00 2.15
2115 2176 0.312416 GAGAGCACGCGAGGTATGAT 59.688 55.000 15.93 0.00 0.00 2.45
2116 2177 1.728069 GAGAGCACGCGAGGTATGA 59.272 57.895 15.93 0.00 0.00 2.15
2117 2178 1.655654 CGAGAGCACGCGAGGTATG 60.656 63.158 15.93 0.00 41.48 2.39
2118 2179 2.716244 CGAGAGCACGCGAGGTAT 59.284 61.111 15.93 8.22 41.48 2.73
2157 2218 9.384682 GAAACGTATTATCGTGAAAAGGAAAAA 57.615 29.630 0.00 0.00 43.38 1.94
2158 2219 8.776470 AGAAACGTATTATCGTGAAAAGGAAAA 58.224 29.630 0.00 0.00 43.38 2.29
2159 2220 8.314143 AGAAACGTATTATCGTGAAAAGGAAA 57.686 30.769 0.00 0.00 43.38 3.13
2160 2221 7.599621 TGAGAAACGTATTATCGTGAAAAGGAA 59.400 33.333 0.00 0.00 43.38 3.36
2163 2224 9.755064 AAATGAGAAACGTATTATCGTGAAAAG 57.245 29.630 0.00 0.00 43.38 2.27
2200 2264 2.584166 ACGTGACTTGTACTACGACG 57.416 50.000 0.00 0.00 39.61 5.12
2204 2268 6.909357 GTGGATGTATACGTGACTTGTACTAC 59.091 42.308 1.31 0.00 0.00 2.73
2263 2332 5.074804 GGCTGGTCTTCCTTTACCTAAAAA 58.925 41.667 0.00 0.00 36.67 1.94
2267 2336 2.910544 TGGCTGGTCTTCCTTTACCTA 58.089 47.619 0.00 0.00 36.67 3.08
2268 2337 1.742308 TGGCTGGTCTTCCTTTACCT 58.258 50.000 0.00 0.00 36.67 3.08
2270 2339 5.007682 TGTAATTGGCTGGTCTTCCTTTAC 58.992 41.667 0.00 0.00 34.23 2.01
2274 2343 3.806949 TTGTAATTGGCTGGTCTTCCT 57.193 42.857 0.00 0.00 34.23 3.36
2276 2345 5.415701 TCTTGATTGTAATTGGCTGGTCTTC 59.584 40.000 0.00 0.00 0.00 2.87
2278 2347 4.702131 GTCTTGATTGTAATTGGCTGGTCT 59.298 41.667 0.00 0.00 0.00 3.85
2279 2348 4.702131 AGTCTTGATTGTAATTGGCTGGTC 59.298 41.667 0.00 0.00 0.00 4.02
2282 2351 5.885230 TCAGTCTTGATTGTAATTGGCTG 57.115 39.130 0.00 0.00 0.00 4.85
2284 2353 7.945033 TTTTTCAGTCTTGATTGTAATTGGC 57.055 32.000 0.00 0.00 32.27 4.52
2306 2383 4.098914 TGGTGTCAAGCCTAGATGTTTT 57.901 40.909 0.00 0.00 0.00 2.43
2311 2388 2.240667 AGCATTGGTGTCAAGCCTAGAT 59.759 45.455 0.00 0.00 36.19 1.98
2316 2393 1.588082 CCAGCATTGGTGTCAAGCC 59.412 57.895 14.29 0.00 39.79 4.35
2348 2439 8.407064 TGATACGTCACTTTTATTTTTGTTGGT 58.593 29.630 0.00 0.00 0.00 3.67
2398 2489 5.071519 CACCTTAGAGGATCAGTGATGGATT 59.928 44.000 11.20 0.00 37.67 3.01
2447 2553 2.613474 CCCCGGTCTAATTCGTTCAACA 60.613 50.000 0.00 0.00 0.00 3.33
2474 2581 2.353011 GGAGTTTAATGACGTGTCCGGA 60.353 50.000 0.00 0.00 38.78 5.14
2513 2621 3.562108 TTCCTCCTCCTCCAACTAACT 57.438 47.619 0.00 0.00 0.00 2.24
2515 2623 2.910977 GGTTTCCTCCTCCTCCAACTAA 59.089 50.000 0.00 0.00 0.00 2.24
2516 2624 2.158066 TGGTTTCCTCCTCCTCCAACTA 60.158 50.000 0.00 0.00 0.00 2.24
2517 2625 1.363246 GGTTTCCTCCTCCTCCAACT 58.637 55.000 0.00 0.00 0.00 3.16
2518 2626 1.064825 TGGTTTCCTCCTCCTCCAAC 58.935 55.000 0.00 0.00 0.00 3.77
2520 2628 2.225779 TGTATGGTTTCCTCCTCCTCCA 60.226 50.000 0.00 0.00 0.00 3.86
2523 2631 3.456277 GACATGTATGGTTTCCTCCTCCT 59.544 47.826 0.00 0.00 0.00 3.69
2550 2661 4.045783 CGTTTGTTGGGTTCATGGTTTAC 58.954 43.478 0.00 0.00 0.00 2.01
2617 2731 0.676736 GGAGATAGTCCAGAAGCGGG 59.323 60.000 0.00 0.00 46.10 6.13
2674 2788 4.154347 GTCCTCAGGCTCCGCTGG 62.154 72.222 0.00 0.00 0.00 4.85
2747 2864 5.478407 CAATGGTTAAGGATGGGTTTGAAC 58.522 41.667 0.00 0.00 0.00 3.18
2762 2879 3.491964 CGAGGCGATTAGTCCAATGGTTA 60.492 47.826 0.00 0.00 0.00 2.85
2816 2934 1.525077 GGTGGTGGCGAGAACAACA 60.525 57.895 0.00 0.00 32.15 3.33
2832 2950 4.002906 TGTTCATCGTCTTTGCTTAGGT 57.997 40.909 0.00 0.00 0.00 3.08
2895 3015 2.047655 GTTGCCGGATCCACACGA 60.048 61.111 13.41 0.00 0.00 4.35
2915 3035 0.683179 TCGGTCATCGATGGTGAGGT 60.683 55.000 24.61 0.00 43.74 3.85
2928 3052 1.112916 TCTGCAGACAACCTCGGTCA 61.113 55.000 13.74 0.00 37.74 4.02
2999 3130 4.340950 ACCCAAAGAAAGAAAAGCGATTCA 59.659 37.500 7.18 0.00 0.00 2.57
3004 3135 4.040445 TCAACCCAAAGAAAGAAAAGCG 57.960 40.909 0.00 0.00 0.00 4.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.