Multiple sequence alignment - TraesCS5D01G068200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G068200 chr5D 100.000 2366 0 0 1 2366 64259107 64261472 0.000000e+00 4370.0
1 TraesCS5D01G068200 chr5D 89.944 716 70 2 3 717 441335974 441336688 0.000000e+00 922.0
2 TraesCS5D01G068200 chr5D 100.000 101 0 0 2266 2366 164679403 164679503 1.120000e-43 187.0
3 TraesCS5D01G068200 chr5D 100.000 99 0 0 2268 2366 365433325 365433227 1.440000e-42 183.0
4 TraesCS5D01G068200 chr5D 98.077 104 1 1 2264 2366 220724711 220724608 1.870000e-41 180.0
5 TraesCS5D01G068200 chr5D 88.889 99 11 0 1820 1918 459145036 459145134 3.190000e-24 122.0
6 TraesCS5D01G068200 chr5D 88.889 72 8 0 1671 1742 309408174 309408245 3.240000e-14 89.8
7 TraesCS5D01G068200 chr5D 87.179 78 9 1 1671 1747 526435110 526435187 1.160000e-13 87.9
8 TraesCS5D01G068200 chr5D 100.000 42 0 0 1809 1850 64260874 64260915 7.010000e-11 78.7
9 TraesCS5D01G068200 chr5D 100.000 42 0 0 1768 1809 64260915 64260956 7.010000e-11 78.7
10 TraesCS5D01G068200 chr5D 93.617 47 3 0 2176 2222 526444695 526444741 1.170000e-08 71.3
11 TraesCS5D01G068200 chr5A 88.594 903 48 26 767 1639 54674980 54674103 0.000000e+00 1046.0
12 TraesCS5D01G068200 chr5A 94.537 421 21 2 1 419 666118831 666119251 0.000000e+00 649.0
13 TraesCS5D01G068200 chr5A 89.873 79 8 0 1809 1887 54673913 54673835 4.160000e-18 102.0
14 TraesCS5D01G068200 chr5A 92.537 67 5 0 1671 1737 488303565 488303499 1.940000e-16 97.1
15 TraesCS5D01G068200 chr5A 86.076 79 10 1 1674 1751 669576906 669576828 1.510000e-12 84.2
16 TraesCS5D01G068200 chr2A 92.737 716 39 4 1 715 706323338 706322635 0.000000e+00 1022.0
17 TraesCS5D01G068200 chr2A 86.400 500 67 1 215 714 599305509 599305011 1.600000e-151 545.0
18 TraesCS5D01G068200 chr2A 89.855 69 7 0 1674 1742 755621565 755621497 3.240000e-14 89.8
19 TraesCS5D01G068200 chr4A 90.443 722 64 5 1 719 595650557 595649838 0.000000e+00 946.0
20 TraesCS5D01G068200 chr4A 92.208 77 6 0 2175 2251 546016664 546016588 2.490000e-20 110.0
21 TraesCS5D01G068200 chr1D 86.231 719 84 13 1 713 253061389 253062098 0.000000e+00 765.0
22 TraesCS5D01G068200 chr1D 96.330 109 3 1 2259 2366 253242553 253242445 6.720000e-41 178.0
23 TraesCS5D01G068200 chr7D 86.322 658 85 5 60 714 33750035 33750690 0.000000e+00 712.0
24 TraesCS5D01G068200 chr7D 88.889 72 8 0 1671 1742 537897900 537897971 3.240000e-14 89.8
25 TraesCS5D01G068200 chr4D 84.444 720 97 12 2 715 497238271 497237561 0.000000e+00 695.0
26 TraesCS5D01G068200 chr4D 100.000 99 0 0 2268 2366 185865175 185865077 1.440000e-42 183.0
27 TraesCS5D01G068200 chr4D 96.396 111 1 3 2256 2366 73876333 73876440 1.870000e-41 180.0
28 TraesCS5D01G068200 chr4D 92.424 66 3 2 1674 1738 72717440 72717376 2.500000e-15 93.5
29 TraesCS5D01G068200 chr3B 81.895 707 113 12 1 701 825995805 825996502 1.220000e-162 582.0
30 TraesCS5D01G068200 chr3B 90.909 110 10 0 1809 1918 75322400 75322509 5.270000e-32 148.0
31 TraesCS5D01G068200 chr3B 89.720 107 11 0 1809 1915 720269803 720269909 1.140000e-28 137.0
32 TraesCS5D01G068200 chr3B 89.062 64 7 0 2053 2116 411451441 411451378 1.950000e-11 80.5
33 TraesCS5D01G068200 chr6B 80.307 716 123 14 1 711 182764390 182763688 2.080000e-145 525.0
34 TraesCS5D01G068200 chr6B 100.000 37 0 0 2175 2211 481846137 481846173 4.220000e-08 69.4
35 TraesCS5D01G068200 chr5B 83.333 480 41 14 710 1163 65956581 65957047 7.870000e-110 407.0
36 TraesCS5D01G068200 chr5B 91.150 226 12 4 1421 1639 65957076 65957300 1.370000e-77 300.0
37 TraesCS5D01G068200 chr5B 88.182 110 13 0 1809 1918 559723236 559723127 5.310000e-27 132.0
38 TraesCS5D01G068200 chr5B 89.706 68 7 0 1671 1738 639095662 639095729 1.160000e-13 87.9
39 TraesCS5D01G068200 chrUn 96.396 111 2 2 2256 2366 69096307 69096415 5.190000e-42 182.0
40 TraesCS5D01G068200 chr2D 97.222 108 0 2 2260 2366 103163816 103163711 1.870000e-41 180.0
41 TraesCS5D01G068200 chr2D 95.495 111 2 2 2256 2366 128297781 128297674 8.690000e-40 174.0
42 TraesCS5D01G068200 chr2D 90.000 110 11 0 1809 1918 73486889 73486780 2.450000e-30 143.0
43 TraesCS5D01G068200 chr6A 89.720 107 11 0 1812 1918 571018561 571018455 1.140000e-28 137.0
44 TraesCS5D01G068200 chr6A 91.358 81 7 0 2171 2251 435311322 435311242 6.910000e-21 111.0
45 TraesCS5D01G068200 chr3D 83.453 139 17 1 1671 1803 612309834 612309972 8.880000e-25 124.0
46 TraesCS5D01G068200 chr3D 91.892 74 6 0 2178 2251 569284393 569284466 1.160000e-18 104.0
47 TraesCS5D01G068200 chr2B 90.909 77 7 0 2174 2250 468234982 468235058 1.160000e-18 104.0
48 TraesCS5D01G068200 chr7B 93.333 60 4 0 2174 2233 517107091 517107150 3.240000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G068200 chr5D 64259107 64261472 2365 False 1509.133333 4370 100.0000 1 2366 3 chr5D.!!$F7 2365
1 TraesCS5D01G068200 chr5D 441335974 441336688 714 False 922.000000 922 89.9440 3 717 1 chr5D.!!$F3 714
2 TraesCS5D01G068200 chr5A 54673835 54674980 1145 True 574.000000 1046 89.2335 767 1887 2 chr5A.!!$R3 1120
3 TraesCS5D01G068200 chr2A 706322635 706323338 703 True 1022.000000 1022 92.7370 1 715 1 chr2A.!!$R2 714
4 TraesCS5D01G068200 chr4A 595649838 595650557 719 True 946.000000 946 90.4430 1 719 1 chr4A.!!$R2 718
5 TraesCS5D01G068200 chr1D 253061389 253062098 709 False 765.000000 765 86.2310 1 713 1 chr1D.!!$F1 712
6 TraesCS5D01G068200 chr7D 33750035 33750690 655 False 712.000000 712 86.3220 60 714 1 chr7D.!!$F1 654
7 TraesCS5D01G068200 chr4D 497237561 497238271 710 True 695.000000 695 84.4440 2 715 1 chr4D.!!$R3 713
8 TraesCS5D01G068200 chr3B 825995805 825996502 697 False 582.000000 582 81.8950 1 701 1 chr3B.!!$F3 700
9 TraesCS5D01G068200 chr6B 182763688 182764390 702 True 525.000000 525 80.3070 1 711 1 chr6B.!!$R1 710
10 TraesCS5D01G068200 chr5B 65956581 65957300 719 False 353.500000 407 87.2415 710 1639 2 chr5B.!!$F2 929

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
900 923 0.035439 ATCATCAACCACACCCGTCC 60.035 55.0 0.0 0.0 0.0 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2017 2180 0.032117 TCGGATGATCCTCCACCAGT 60.032 55.0 16.25 0.0 34.78 4.0 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
156 159 2.257371 CTCCGGCGTTCAGTTCGA 59.743 61.111 6.01 0.00 0.00 3.71
507 520 0.690762 GGCTGTAGGTGGAGTTTGGA 59.309 55.000 0.00 0.00 0.00 3.53
508 521 1.610886 GGCTGTAGGTGGAGTTTGGAC 60.611 57.143 0.00 0.00 0.00 4.02
521 534 3.161866 AGTTTGGACTTGTGTGGTTGTT 58.838 40.909 0.00 0.00 29.87 2.83
736 751 4.887748 AGAATAGACTCCACACAACACAG 58.112 43.478 0.00 0.00 0.00 3.66
746 761 4.012895 CAACACAGCCACGTCGCC 62.013 66.667 0.09 0.00 0.00 5.54
765 785 2.159057 GCCAAAGGCCCAAATACATCAG 60.159 50.000 0.00 0.00 44.06 2.90
780 800 1.779025 ATCAGATGCATGCGAACGGC 61.779 55.000 14.09 0.00 43.96 5.68
789 809 3.236137 GCGAACGGCGACTCGTAC 61.236 66.667 27.06 14.41 43.07 3.67
792 812 2.127118 AACGGCGACTCGTACGTG 60.127 61.111 16.62 15.64 43.07 4.49
793 813 2.770587 GAACGGCGACTCGTACGTGT 62.771 60.000 21.73 21.73 43.07 4.49
795 815 2.423031 CGGCGACTCGTACGTGTTG 61.423 63.158 26.03 26.03 0.00 3.33
796 816 1.370900 GGCGACTCGTACGTGTTGT 60.371 57.895 28.77 18.04 0.00 3.32
846 866 4.034258 CTGCCACGCTTGCCACAG 62.034 66.667 0.00 0.00 0.00 3.66
854 874 3.716006 CTTGCCACAGGTGTCGCG 61.716 66.667 0.00 0.00 0.00 5.87
868 888 1.447140 TCGCGTCCTATGGTGCAAC 60.447 57.895 5.77 0.00 0.00 4.17
895 918 5.221244 GCCCTATTAAATCATCAACCACACC 60.221 44.000 0.00 0.00 0.00 4.16
900 923 0.035439 ATCATCAACCACACCCGTCC 60.035 55.000 0.00 0.00 0.00 4.79
905 928 4.697756 ACCACACCCGTCCGCATG 62.698 66.667 0.00 0.00 0.00 4.06
920 943 1.796151 CATGCGTCCGAAACAGCAT 59.204 52.632 11.35 11.35 43.78 3.79
951 974 4.240049 GCACAAAGCAAGCTCAGC 57.760 55.556 3.06 3.06 44.79 4.26
952 975 1.361271 GCACAAAGCAAGCTCAGCA 59.639 52.632 12.90 0.00 44.79 4.41
953 976 0.663568 GCACAAAGCAAGCTCAGCAG 60.664 55.000 12.90 0.00 44.79 4.24
954 977 0.666913 CACAAAGCAAGCTCAGCAGT 59.333 50.000 12.90 6.10 0.00 4.40
955 978 0.950116 ACAAAGCAAGCTCAGCAGTC 59.050 50.000 12.90 0.00 0.00 3.51
956 979 0.949397 CAAAGCAAGCTCAGCAGTCA 59.051 50.000 12.90 0.00 0.00 3.41
957 980 1.069159 CAAAGCAAGCTCAGCAGTCAG 60.069 52.381 12.90 0.00 0.00 3.51
958 981 0.605860 AAGCAAGCTCAGCAGTCAGG 60.606 55.000 12.90 0.00 0.00 3.86
959 982 1.004080 GCAAGCTCAGCAGTCAGGA 60.004 57.895 0.00 0.00 0.00 3.86
960 983 0.604780 GCAAGCTCAGCAGTCAGGAA 60.605 55.000 0.00 0.00 0.00 3.36
961 984 1.440708 CAAGCTCAGCAGTCAGGAAG 58.559 55.000 0.00 0.00 0.00 3.46
962 985 0.324285 AAGCTCAGCAGTCAGGAAGG 59.676 55.000 0.00 0.00 0.00 3.46
966 989 1.673665 CAGCAGTCAGGAAGGGCAC 60.674 63.158 0.00 0.00 0.00 5.01
969 992 3.241530 AGTCAGGAAGGGCACGCA 61.242 61.111 0.00 0.00 0.00 5.24
989 1012 1.444119 GCACCTCAGCGAACCAACAA 61.444 55.000 0.00 0.00 0.00 2.83
993 1016 1.608590 CCTCAGCGAACCAACAACAAT 59.391 47.619 0.00 0.00 0.00 2.71
997 1020 2.095768 CAGCGAACCAACAACAATCGAT 60.096 45.455 0.00 0.00 35.65 3.59
1368 1427 2.359981 ATGGTAGCACCGTCTAGCTA 57.640 50.000 0.00 0.00 42.58 3.32
1370 1429 3.849619 GTAGCACCGTCTAGCTAGC 57.150 57.895 16.35 6.62 43.39 3.42
1396 1455 2.203056 TCTGTGCGTGCTTGCTGT 60.203 55.556 2.56 0.00 35.36 4.40
1397 1456 2.051614 CTGTGCGTGCTTGCTGTG 60.052 61.111 2.56 0.00 35.36 3.66
1398 1457 2.823593 TGTGCGTGCTTGCTGTGT 60.824 55.556 2.56 0.00 35.36 3.72
1399 1458 1.498043 CTGTGCGTGCTTGCTGTGTA 61.498 55.000 2.56 0.00 35.36 2.90
1400 1459 1.205064 GTGCGTGCTTGCTGTGTAG 59.795 57.895 2.56 0.00 35.36 2.74
1524 1618 6.322491 CGATGTGTACTGTTGTATTCTCTCA 58.678 40.000 0.00 0.00 0.00 3.27
1525 1619 6.470556 CGATGTGTACTGTTGTATTCTCTCAG 59.529 42.308 0.00 0.00 0.00 3.35
1592 1693 4.951715 TGCCTTCTCATAAATCAATGCACT 59.048 37.500 0.00 0.00 0.00 4.40
1597 1698 8.341173 CCTTCTCATAAATCAATGCACTCTAAC 58.659 37.037 0.00 0.00 0.00 2.34
1663 1789 2.418628 ACAAATATGACCCTCAAACGCG 59.581 45.455 3.53 3.53 0.00 6.01
1685 1842 3.822996 CGGTGACCGTGTATCTCATATC 58.177 50.000 17.28 0.00 42.73 1.63
1687 1844 3.572682 GGTGACCGTGTATCTCATATCCA 59.427 47.826 0.00 0.00 0.00 3.41
1690 1847 5.864474 GTGACCGTGTATCTCATATCCAATC 59.136 44.000 0.00 0.00 0.00 2.67
1692 1849 5.087323 ACCGTGTATCTCATATCCAATCCT 58.913 41.667 0.00 0.00 0.00 3.24
1693 1850 5.186021 ACCGTGTATCTCATATCCAATCCTC 59.814 44.000 0.00 0.00 0.00 3.71
1696 1853 7.286546 CCGTGTATCTCATATCCAATCCTCTAT 59.713 40.741 0.00 0.00 0.00 1.98
1720 1877 5.984233 TCCATACTAAATCATGCAACGTC 57.016 39.130 0.00 0.00 0.00 4.34
1721 1878 4.506288 TCCATACTAAATCATGCAACGTCG 59.494 41.667 0.00 0.00 0.00 5.12
1724 1881 6.292865 CCATACTAAATCATGCAACGTCGATT 60.293 38.462 0.00 0.00 0.00 3.34
1731 1888 6.844696 ATCATGCAACGTCGATTAAAGTAT 57.155 33.333 0.00 0.00 0.00 2.12
1735 1892 6.563398 TGCAACGTCGATTAAAGTATGTAG 57.437 37.500 0.00 0.00 0.00 2.74
1738 1895 7.490079 TGCAACGTCGATTAAAGTATGTAGATT 59.510 33.333 0.00 0.00 0.00 2.40
1751 1908 9.502091 AAAGTATGTAGATTAGCAAACAGACAA 57.498 29.630 4.24 0.00 36.72 3.18
1752 1909 8.709386 AGTATGTAGATTAGCAAACAGACAAG 57.291 34.615 4.24 0.00 36.72 3.16
1755 1918 4.756084 AGATTAGCAAACAGACAAGCAC 57.244 40.909 0.00 0.00 0.00 4.40
1763 1926 5.043248 GCAAACAGACAAGCACAATACTTT 58.957 37.500 0.00 0.00 0.00 2.66
1766 1929 6.639632 AACAGACAAGCACAATACTTTCAT 57.360 33.333 0.00 0.00 0.00 2.57
1775 1938 8.857216 CAAGCACAATACTTTCATCAAAAGATC 58.143 33.333 4.64 0.00 46.18 2.75
1777 1940 7.119699 AGCACAATACTTTCATCAAAAGATCGA 59.880 33.333 4.64 0.00 46.18 3.59
1793 1956 6.737254 AAGATCGAATGTTTAAACGACCAT 57.263 33.333 13.45 0.00 37.58 3.55
1798 1961 6.367421 TCGAATGTTTAAACGACCATCAAAG 58.633 36.000 13.45 0.00 0.00 2.77
1799 1962 6.017770 TCGAATGTTTAAACGACCATCAAAGT 60.018 34.615 13.45 0.00 0.00 2.66
1800 1963 6.635239 CGAATGTTTAAACGACCATCAAAGTT 59.365 34.615 13.45 0.00 0.00 2.66
1801 1964 7.149192 CGAATGTTTAAACGACCATCAAAGTTC 60.149 37.037 13.45 3.35 0.00 3.01
1802 1965 6.438259 TGTTTAAACGACCATCAAAGTTCA 57.562 33.333 13.45 0.00 0.00 3.18
1803 1966 6.853720 TGTTTAAACGACCATCAAAGTTCAA 58.146 32.000 13.45 0.00 0.00 2.69
1804 1967 7.313646 TGTTTAAACGACCATCAAAGTTCAAA 58.686 30.769 13.45 0.00 0.00 2.69
1805 1968 7.273815 TGTTTAAACGACCATCAAAGTTCAAAC 59.726 33.333 13.45 0.50 36.05 2.93
1806 1969 3.602390 ACGACCATCAAAGTTCAAACG 57.398 42.857 0.00 0.00 0.00 3.60
1807 1970 3.199677 ACGACCATCAAAGTTCAAACGA 58.800 40.909 0.00 0.00 0.00 3.85
1808 1971 3.001939 ACGACCATCAAAGTTCAAACGAC 59.998 43.478 0.00 0.00 0.00 4.34
1809 1972 3.001838 CGACCATCAAAGTTCAAACGACA 59.998 43.478 0.00 0.00 0.00 4.35
1810 1973 4.495019 CGACCATCAAAGTTCAAACGACAA 60.495 41.667 0.00 0.00 0.00 3.18
1811 1974 5.317733 ACCATCAAAGTTCAAACGACAAA 57.682 34.783 0.00 0.00 0.00 2.83
1812 1975 5.715070 ACCATCAAAGTTCAAACGACAAAA 58.285 33.333 0.00 0.00 0.00 2.44
1813 1976 5.804979 ACCATCAAAGTTCAAACGACAAAAG 59.195 36.000 0.00 0.00 0.00 2.27
1814 1977 6.033341 CCATCAAAGTTCAAACGACAAAAGA 58.967 36.000 0.00 0.00 0.00 2.52
1815 1978 6.697019 CCATCAAAGTTCAAACGACAAAAGAT 59.303 34.615 0.00 0.00 0.00 2.40
1816 1979 7.096477 CCATCAAAGTTCAAACGACAAAAGATC 60.096 37.037 0.00 0.00 0.00 2.75
1817 1980 5.963004 TCAAAGTTCAAACGACAAAAGATCG 59.037 36.000 0.00 0.00 45.17 3.69
1818 1981 5.728351 AAGTTCAAACGACAAAAGATCGA 57.272 34.783 0.78 0.00 42.25 3.59
1819 1982 5.728351 AGTTCAAACGACAAAAGATCGAA 57.272 34.783 0.78 0.00 42.25 3.71
1820 1983 6.300354 AGTTCAAACGACAAAAGATCGAAT 57.700 33.333 0.78 0.00 42.25 3.34
1821 1984 6.136071 AGTTCAAACGACAAAAGATCGAATG 58.864 36.000 0.78 0.43 42.25 2.67
1822 1985 5.666969 TCAAACGACAAAAGATCGAATGT 57.333 34.783 0.78 0.79 42.25 2.71
1823 1986 6.055231 TCAAACGACAAAAGATCGAATGTT 57.945 33.333 0.78 0.00 42.25 2.71
1824 1987 6.491394 TCAAACGACAAAAGATCGAATGTTT 58.509 32.000 0.78 0.00 42.25 2.83
1825 1988 7.631822 TCAAACGACAAAAGATCGAATGTTTA 58.368 30.769 0.78 0.00 42.25 2.01
1826 1989 8.123575 TCAAACGACAAAAGATCGAATGTTTAA 58.876 29.630 0.78 0.00 42.25 1.52
1827 1990 8.738554 CAAACGACAAAAGATCGAATGTTTAAA 58.261 29.630 0.78 0.00 42.25 1.52
1828 1991 7.831750 ACGACAAAAGATCGAATGTTTAAAC 57.168 32.000 11.54 11.54 42.25 2.01
1829 1992 6.572254 ACGACAAAAGATCGAATGTTTAAACG 59.428 34.615 13.45 1.91 42.25 3.60
1830 1993 6.788458 CGACAAAAGATCGAATGTTTAAACGA 59.212 34.615 13.45 7.40 42.25 3.85
1831 1994 7.201041 CGACAAAAGATCGAATGTTTAAACGAC 60.201 37.037 13.45 6.52 42.25 4.34
1832 1995 6.854381 ACAAAAGATCGAATGTTTAAACGACC 59.146 34.615 13.45 0.00 37.58 4.79
1833 1996 6.548441 AAAGATCGAATGTTTAAACGACCA 57.452 33.333 13.45 0.00 37.58 4.02
1834 1997 6.737254 AAGATCGAATGTTTAAACGACCAT 57.263 33.333 13.45 0.00 37.58 3.55
1835 1998 6.345920 AGATCGAATGTTTAAACGACCATC 57.654 37.500 13.45 10.31 37.58 3.51
1836 1999 5.872617 AGATCGAATGTTTAAACGACCATCA 59.127 36.000 13.45 0.00 37.58 3.07
1837 2000 5.926214 TCGAATGTTTAAACGACCATCAA 57.074 34.783 13.45 0.00 0.00 2.57
1838 2001 6.301687 TCGAATGTTTAAACGACCATCAAA 57.698 33.333 13.45 0.00 0.00 2.69
1839 2002 6.367421 TCGAATGTTTAAACGACCATCAAAG 58.633 36.000 13.45 0.00 0.00 2.77
1870 2033 5.277601 ACGGACAATTTGAAACTACATCG 57.722 39.130 2.79 0.00 0.00 3.84
1872 2035 5.107220 ACGGACAATTTGAAACTACATCGAC 60.107 40.000 2.79 0.00 0.00 4.20
1882 2045 6.711579 TGAAACTACATCGACAACTTGAAAC 58.288 36.000 0.00 0.00 0.00 2.78
1887 2050 8.603242 ACTACATCGACAACTTGAAACTAAAT 57.397 30.769 0.00 0.00 0.00 1.40
1888 2051 9.052759 ACTACATCGACAACTTGAAACTAAATT 57.947 29.630 0.00 0.00 0.00 1.82
1889 2052 9.318041 CTACATCGACAACTTGAAACTAAATTG 57.682 33.333 0.00 0.00 0.00 2.32
1890 2053 7.925993 ACATCGACAACTTGAAACTAAATTGA 58.074 30.769 0.00 0.00 0.00 2.57
1891 2054 8.402472 ACATCGACAACTTGAAACTAAATTGAA 58.598 29.630 0.00 0.00 0.00 2.69
1892 2055 8.895845 CATCGACAACTTGAAACTAAATTGAAG 58.104 33.333 0.00 0.00 0.00 3.02
1893 2056 6.910433 TCGACAACTTGAAACTAAATTGAAGC 59.090 34.615 0.00 0.00 0.00 3.86
1894 2057 6.690957 CGACAACTTGAAACTAAATTGAAGCA 59.309 34.615 0.00 0.00 0.00 3.91
1895 2058 7.219917 CGACAACTTGAAACTAAATTGAAGCAA 59.780 33.333 0.00 0.00 0.00 3.91
1896 2059 8.770438 ACAACTTGAAACTAAATTGAAGCAAA 57.230 26.923 0.00 0.00 0.00 3.68
1897 2060 8.872845 ACAACTTGAAACTAAATTGAAGCAAAG 58.127 29.630 0.00 0.00 0.00 2.77
1898 2061 7.468922 ACTTGAAACTAAATTGAAGCAAAGC 57.531 32.000 0.00 0.00 0.00 3.51
1899 2062 6.198966 ACTTGAAACTAAATTGAAGCAAAGCG 59.801 34.615 0.00 0.00 0.00 4.68
1900 2063 4.981674 TGAAACTAAATTGAAGCAAAGCGG 59.018 37.500 0.00 0.00 0.00 5.52
1901 2064 4.846779 AACTAAATTGAAGCAAAGCGGA 57.153 36.364 0.00 0.00 0.00 5.54
1902 2065 5.391312 AACTAAATTGAAGCAAAGCGGAT 57.609 34.783 0.00 0.00 0.00 4.18
1903 2066 4.986622 ACTAAATTGAAGCAAAGCGGATC 58.013 39.130 0.00 0.00 0.00 3.36
1904 2067 4.702131 ACTAAATTGAAGCAAAGCGGATCT 59.298 37.500 0.00 0.00 0.00 2.75
1905 2068 4.525912 AAATTGAAGCAAAGCGGATCTT 57.474 36.364 0.00 0.00 36.34 2.40
1906 2069 3.772060 ATTGAAGCAAAGCGGATCTTC 57.228 42.857 0.00 0.00 36.42 2.87
1907 2070 2.183478 TGAAGCAAAGCGGATCTTCA 57.817 45.000 9.38 9.38 41.57 3.02
1908 2071 1.806542 TGAAGCAAAGCGGATCTTCAC 59.193 47.619 9.38 0.00 39.70 3.18
1909 2072 1.131315 GAAGCAAAGCGGATCTTCACC 59.869 52.381 0.00 0.00 36.04 4.02
1910 2073 0.036732 AGCAAAGCGGATCTTCACCA 59.963 50.000 0.00 0.00 32.88 4.17
1911 2074 0.169009 GCAAAGCGGATCTTCACCAC 59.831 55.000 0.00 0.00 32.88 4.16
1912 2075 1.813513 CAAAGCGGATCTTCACCACT 58.186 50.000 0.00 0.00 32.88 4.00
1913 2076 2.154462 CAAAGCGGATCTTCACCACTT 58.846 47.619 0.00 0.00 32.88 3.16
1914 2077 2.100605 AAGCGGATCTTCACCACTTC 57.899 50.000 0.00 0.00 0.00 3.01
1915 2078 0.250513 AGCGGATCTTCACCACTTCC 59.749 55.000 0.00 0.00 0.00 3.46
1916 2079 3.050703 CGGATCTTCACCACTTCCG 57.949 57.895 0.00 0.00 42.79 4.30
1917 2080 0.460284 CGGATCTTCACCACTTCCGG 60.460 60.000 0.00 0.00 44.24 5.14
1918 2081 0.902531 GGATCTTCACCACTTCCGGA 59.097 55.000 0.00 0.00 0.00 5.14
1919 2082 1.278127 GGATCTTCACCACTTCCGGAA 59.722 52.381 17.73 17.73 0.00 4.30
1920 2083 2.290071 GGATCTTCACCACTTCCGGAAA 60.290 50.000 19.39 0.00 0.00 3.13
1921 2084 3.610911 GATCTTCACCACTTCCGGAAAT 58.389 45.455 19.39 4.98 0.00 2.17
1922 2085 3.502123 TCTTCACCACTTCCGGAAATT 57.498 42.857 19.39 5.15 0.00 1.82
1923 2086 3.827722 TCTTCACCACTTCCGGAAATTT 58.172 40.909 19.39 2.33 0.00 1.82
1924 2087 3.818773 TCTTCACCACTTCCGGAAATTTC 59.181 43.478 19.39 9.83 0.00 2.17
1925 2088 3.216187 TCACCACTTCCGGAAATTTCA 57.784 42.857 19.39 0.00 0.00 2.69
1926 2089 2.882137 TCACCACTTCCGGAAATTTCAC 59.118 45.455 19.39 8.30 0.00 3.18
1927 2090 2.030274 CACCACTTCCGGAAATTTCACC 60.030 50.000 19.39 3.24 0.00 4.02
1928 2091 2.235016 CCACTTCCGGAAATTTCACCA 58.765 47.619 19.39 0.00 0.00 4.17
1929 2092 2.030274 CCACTTCCGGAAATTTCACCAC 60.030 50.000 19.39 1.61 0.00 4.16
1930 2093 2.884639 CACTTCCGGAAATTTCACCACT 59.115 45.455 19.39 0.00 0.00 4.00
1931 2094 3.317993 CACTTCCGGAAATTTCACCACTT 59.682 43.478 19.39 0.00 0.00 3.16
1932 2095 3.568430 ACTTCCGGAAATTTCACCACTTC 59.432 43.478 19.39 0.00 0.00 3.01
1933 2096 2.510613 TCCGGAAATTTCACCACTTCC 58.489 47.619 19.49 0.00 35.06 3.46
1936 2099 2.510613 GGAAATTTCACCACTTCCGGA 58.489 47.619 19.49 0.00 0.00 5.14
1937 2100 2.888414 GGAAATTTCACCACTTCCGGAA 59.112 45.455 17.73 17.73 0.00 4.30
1938 2101 3.319689 GGAAATTTCACCACTTCCGGAAA 59.680 43.478 19.39 0.15 34.17 3.13
1939 2102 4.021456 GGAAATTTCACCACTTCCGGAAAT 60.021 41.667 19.39 4.98 40.59 2.17
1940 2103 5.510690 GGAAATTTCACCACTTCCGGAAATT 60.511 40.000 19.39 9.38 46.30 1.82
1941 2104 6.294843 GGAAATTTCACCACTTCCGGAAATTA 60.295 38.462 19.39 0.00 44.64 1.40
1942 2105 6.658188 AATTTCACCACTTCCGGAAATTAA 57.342 33.333 19.39 6.22 43.99 1.40
1943 2106 6.658188 ATTTCACCACTTCCGGAAATTAAA 57.342 33.333 19.39 12.55 36.79 1.52
1944 2107 6.658188 TTTCACCACTTCCGGAAATTAAAT 57.342 33.333 19.39 0.00 0.00 1.40
1945 2108 6.658188 TTCACCACTTCCGGAAATTAAATT 57.342 33.333 19.39 0.00 0.00 1.82
1946 2109 6.019779 TCACCACTTCCGGAAATTAAATTG 57.980 37.500 19.39 6.30 0.00 2.32
1947 2110 5.770663 TCACCACTTCCGGAAATTAAATTGA 59.229 36.000 19.39 11.13 0.00 2.57
1948 2111 6.265649 TCACCACTTCCGGAAATTAAATTGAA 59.734 34.615 19.39 0.00 0.00 2.69
1949 2112 6.586082 CACCACTTCCGGAAATTAAATTGAAG 59.414 38.462 19.39 3.98 35.16 3.02
1950 2113 5.576774 CCACTTCCGGAAATTAAATTGAAGC 59.423 40.000 19.39 0.00 32.92 3.86
1951 2114 6.155827 CACTTCCGGAAATTAAATTGAAGCA 58.844 36.000 19.39 0.00 32.92 3.91
1952 2115 6.644592 CACTTCCGGAAATTAAATTGAAGCAA 59.355 34.615 19.39 0.00 32.92 3.91
1953 2116 7.170658 CACTTCCGGAAATTAAATTGAAGCAAA 59.829 33.333 19.39 0.00 32.92 3.68
1954 2117 7.384932 ACTTCCGGAAATTAAATTGAAGCAAAG 59.615 33.333 19.39 1.80 32.92 2.77
1955 2118 5.637387 TCCGGAAATTAAATTGAAGCAAAGC 59.363 36.000 0.00 0.00 0.00 3.51
1956 2119 5.444481 CCGGAAATTAAATTGAAGCAAAGCG 60.444 40.000 0.00 0.00 0.00 4.68
1957 2120 5.444481 CGGAAATTAAATTGAAGCAAAGCGG 60.444 40.000 0.00 0.00 0.00 5.52
1958 2121 5.637387 GGAAATTAAATTGAAGCAAAGCGGA 59.363 36.000 0.00 0.00 0.00 5.54
1959 2122 6.401047 GGAAATTAAATTGAAGCAAAGCGGAC 60.401 38.462 0.00 0.00 0.00 4.79
1960 2123 4.846779 TTAAATTGAAGCAAAGCGGACT 57.153 36.364 0.00 0.00 0.00 3.85
1961 2124 3.733443 AAATTGAAGCAAAGCGGACTT 57.267 38.095 0.00 0.00 37.90 3.01
1963 2126 2.774439 TTGAAGCAAAGCGGACTTTC 57.226 45.000 0.00 0.00 44.41 2.62
1964 2127 1.674359 TGAAGCAAAGCGGACTTTCA 58.326 45.000 0.00 0.00 44.41 2.69
1965 2128 1.333619 TGAAGCAAAGCGGACTTTCAC 59.666 47.619 0.00 0.00 44.41 3.18
1966 2129 0.668535 AAGCAAAGCGGACTTTCACC 59.331 50.000 0.00 0.00 44.41 4.02
1967 2130 0.465460 AGCAAAGCGGACTTTCACCA 60.465 50.000 0.00 0.00 44.41 4.17
1968 2131 0.317854 GCAAAGCGGACTTTCACCAC 60.318 55.000 0.00 0.00 44.41 4.16
1969 2132 1.308998 CAAAGCGGACTTTCACCACT 58.691 50.000 0.00 0.00 44.41 4.00
1970 2133 1.676006 CAAAGCGGACTTTCACCACTT 59.324 47.619 0.00 0.00 44.41 3.16
1971 2134 1.594331 AAGCGGACTTTCACCACTTC 58.406 50.000 0.00 0.00 29.41 3.01
1972 2135 0.759346 AGCGGACTTTCACCACTTCT 59.241 50.000 0.00 0.00 0.00 2.85
1973 2136 0.868406 GCGGACTTTCACCACTTCTG 59.132 55.000 0.00 0.00 0.00 3.02
1974 2137 1.512926 CGGACTTTCACCACTTCTGG 58.487 55.000 0.00 0.00 44.26 3.86
1975 2138 1.878102 CGGACTTTCACCACTTCTGGG 60.878 57.143 0.00 0.00 42.74 4.45
1976 2139 1.239347 GACTTTCACCACTTCTGGGC 58.761 55.000 0.00 0.00 42.74 5.36
1977 2140 0.178990 ACTTTCACCACTTCTGGGCC 60.179 55.000 0.00 0.00 42.74 5.80
1978 2141 1.228124 TTTCACCACTTCTGGGCCG 60.228 57.895 0.00 0.00 42.74 6.13
1979 2142 2.690653 TTTCACCACTTCTGGGCCGG 62.691 60.000 5.83 5.83 42.74 6.13
1982 2145 4.431131 CCACTTCTGGGCCGGCAT 62.431 66.667 30.85 0.34 33.23 4.40
1983 2146 2.825836 CACTTCTGGGCCGGCATC 60.826 66.667 30.85 20.21 0.00 3.91
1984 2147 3.011517 ACTTCTGGGCCGGCATCT 61.012 61.111 30.85 0.00 0.00 2.90
1985 2148 2.273449 CTTCTGGGCCGGCATCTT 59.727 61.111 30.85 0.00 0.00 2.40
1986 2149 1.821332 CTTCTGGGCCGGCATCTTC 60.821 63.158 30.85 10.33 0.00 2.87
1987 2150 3.344137 TTCTGGGCCGGCATCTTCC 62.344 63.158 30.85 20.36 0.00 3.46
2006 2169 4.735132 GTCGCCGGTGTAGCTGCA 62.735 66.667 16.01 0.00 0.00 4.41
2007 2170 4.435436 TCGCCGGTGTAGCTGCAG 62.435 66.667 16.01 10.11 0.00 4.41
2025 2188 3.680786 CTGTCGGCGACTGGTGGA 61.681 66.667 36.17 17.30 33.15 4.02
2026 2189 3.633094 CTGTCGGCGACTGGTGGAG 62.633 68.421 36.17 22.27 33.15 3.86
2027 2190 4.436998 GTCGGCGACTGGTGGAGG 62.437 72.222 31.15 0.00 0.00 4.30
2028 2191 4.671590 TCGGCGACTGGTGGAGGA 62.672 66.667 4.99 0.00 0.00 3.71
2029 2192 3.461773 CGGCGACTGGTGGAGGAT 61.462 66.667 0.00 0.00 0.00 3.24
2030 2193 2.501610 GGCGACTGGTGGAGGATC 59.498 66.667 0.00 0.00 0.00 3.36
2031 2194 2.359169 GGCGACTGGTGGAGGATCA 61.359 63.158 0.00 0.00 36.25 2.92
2032 2195 1.690219 GGCGACTGGTGGAGGATCAT 61.690 60.000 0.00 0.00 36.25 2.45
2033 2196 0.249657 GCGACTGGTGGAGGATCATC 60.250 60.000 0.00 0.00 36.25 2.92
2034 2197 0.390860 CGACTGGTGGAGGATCATCC 59.609 60.000 19.59 19.59 40.03 3.51
2035 2198 0.390860 GACTGGTGGAGGATCATCCG 59.609 60.000 20.81 9.44 42.75 4.18
2036 2199 0.032117 ACTGGTGGAGGATCATCCGA 60.032 55.000 20.81 8.04 42.75 4.55
2037 2200 0.390860 CTGGTGGAGGATCATCCGAC 59.609 60.000 20.81 18.06 42.75 4.79
2038 2201 0.032117 TGGTGGAGGATCATCCGACT 60.032 55.000 20.81 0.00 42.75 4.18
2039 2202 0.676736 GGTGGAGGATCATCCGACTC 59.323 60.000 20.81 11.06 42.75 3.36
2040 2203 0.312416 GTGGAGGATCATCCGACTCG 59.688 60.000 20.81 0.00 42.75 4.18
2041 2204 0.106669 TGGAGGATCATCCGACTCGT 60.107 55.000 20.81 0.00 42.75 4.18
2042 2205 0.594110 GGAGGATCATCCGACTCGTC 59.406 60.000 11.24 0.00 42.75 4.20
2043 2206 0.236187 GAGGATCATCCGACTCGTCG 59.764 60.000 12.19 12.19 42.75 5.12
2044 2207 2.140398 GAGGATCATCCGACTCGTCGA 61.140 57.143 19.91 7.41 45.62 4.20
2045 2208 3.632829 GAGGATCATCCGACTCGTCGAA 61.633 54.545 19.91 0.12 45.62 3.71
2046 2209 5.665010 GAGGATCATCCGACTCGTCGAAC 62.665 56.522 19.91 0.06 45.62 3.95
2052 2215 2.202453 GACTCGTCGAACGGCTCC 60.202 66.667 0.00 0.00 42.81 4.70
2053 2216 2.672307 ACTCGTCGAACGGCTCCT 60.672 61.111 0.00 0.00 42.81 3.69
2054 2217 2.202492 CTCGTCGAACGGCTCCTG 60.202 66.667 0.00 0.00 42.81 3.86
2055 2218 2.979197 CTCGTCGAACGGCTCCTGT 61.979 63.158 0.00 0.00 42.81 4.00
2056 2219 1.642037 CTCGTCGAACGGCTCCTGTA 61.642 60.000 0.00 0.00 42.81 2.74
2057 2220 1.226323 CGTCGAACGGCTCCTGTAG 60.226 63.158 0.00 0.00 38.08 2.74
2076 2239 3.257561 CGTCGGCGGCTGATGAAG 61.258 66.667 23.54 8.37 0.00 3.02
2077 2240 2.892425 GTCGGCGGCTGATGAAGG 60.892 66.667 15.60 0.00 0.00 3.46
2078 2241 3.074369 TCGGCGGCTGATGAAGGA 61.074 61.111 7.57 0.00 0.00 3.36
2079 2242 2.109799 CGGCGGCTGATGAAGGAT 59.890 61.111 7.61 0.00 0.00 3.24
2080 2243 1.958205 CGGCGGCTGATGAAGGATC 60.958 63.158 7.61 0.00 0.00 3.36
2081 2244 1.146930 GGCGGCTGATGAAGGATCA 59.853 57.895 0.00 0.00 38.87 2.92
2092 2255 3.371102 TGAAGGATCATCCGAATCGTC 57.629 47.619 0.82 0.00 42.75 4.20
2093 2256 3.612717 ATGAAGGATCATCCGAATCGTCG 60.613 47.826 0.82 0.00 42.75 5.12
2102 2265 2.945315 CGAATCGTCGGACAAGGAG 58.055 57.895 9.10 0.00 43.81 3.69
2103 2266 1.140407 CGAATCGTCGGACAAGGAGC 61.140 60.000 9.10 0.00 43.81 4.70
2104 2267 0.806492 GAATCGTCGGACAAGGAGCC 60.806 60.000 9.10 0.00 0.00 4.70
2111 2274 4.373116 GACAAGGAGCCGTCGCCA 62.373 66.667 0.00 0.00 34.28 5.69
2112 2275 3.665675 GACAAGGAGCCGTCGCCAT 62.666 63.158 0.00 0.00 34.28 4.40
2113 2276 2.892425 CAAGGAGCCGTCGCCATC 60.892 66.667 0.00 0.00 34.28 3.51
2114 2277 4.514577 AAGGAGCCGTCGCCATCG 62.515 66.667 0.00 0.00 34.28 3.84
2116 2279 4.814294 GGAGCCGTCGCCATCGTT 62.814 66.667 0.00 0.00 36.96 3.85
2117 2280 3.554692 GAGCCGTCGCCATCGTTG 61.555 66.667 0.00 0.00 36.96 4.10
2120 2283 2.433491 CCGTCGCCATCGTTGGAA 60.433 61.111 16.83 0.38 46.92 3.53
2121 2284 2.452813 CCGTCGCCATCGTTGGAAG 61.453 63.158 16.83 9.09 46.92 3.46
2122 2285 1.445410 CGTCGCCATCGTTGGAAGA 60.445 57.895 16.83 11.21 46.92 2.87
2123 2286 1.413767 CGTCGCCATCGTTGGAAGAG 61.414 60.000 16.83 4.36 46.92 2.85
2124 2287 1.084370 GTCGCCATCGTTGGAAGAGG 61.084 60.000 16.83 0.00 46.92 3.69
2125 2288 1.218047 CGCCATCGTTGGAAGAGGA 59.782 57.895 16.83 0.00 46.92 3.71
2126 2289 0.807667 CGCCATCGTTGGAAGAGGAG 60.808 60.000 16.83 0.00 46.92 3.69
2127 2290 0.462759 GCCATCGTTGGAAGAGGAGG 60.463 60.000 16.83 0.00 46.92 4.30
2128 2291 1.195115 CCATCGTTGGAAGAGGAGGA 58.805 55.000 6.68 0.00 46.92 3.71
2129 2292 1.137872 CCATCGTTGGAAGAGGAGGAG 59.862 57.143 6.68 0.00 46.92 3.69
2130 2293 2.103373 CATCGTTGGAAGAGGAGGAGA 58.897 52.381 0.00 0.00 0.00 3.71
2131 2294 1.546961 TCGTTGGAAGAGGAGGAGAC 58.453 55.000 0.00 0.00 0.00 3.36
2132 2295 0.171455 CGTTGGAAGAGGAGGAGACG 59.829 60.000 0.00 0.00 0.00 4.18
2133 2296 1.546961 GTTGGAAGAGGAGGAGACGA 58.453 55.000 0.00 0.00 0.00 4.20
2134 2297 2.104170 GTTGGAAGAGGAGGAGACGAT 58.896 52.381 0.00 0.00 0.00 3.73
2135 2298 1.769026 TGGAAGAGGAGGAGACGATG 58.231 55.000 0.00 0.00 0.00 3.84
2136 2299 1.285078 TGGAAGAGGAGGAGACGATGA 59.715 52.381 0.00 0.00 0.00 2.92
2137 2300 2.091610 TGGAAGAGGAGGAGACGATGAT 60.092 50.000 0.00 0.00 0.00 2.45
2138 2301 2.295909 GGAAGAGGAGGAGACGATGATG 59.704 54.545 0.00 0.00 0.00 3.07
2139 2302 3.218453 GAAGAGGAGGAGACGATGATGA 58.782 50.000 0.00 0.00 0.00 2.92
2140 2303 2.862541 AGAGGAGGAGACGATGATGAG 58.137 52.381 0.00 0.00 0.00 2.90
2141 2304 1.885887 GAGGAGGAGACGATGATGAGG 59.114 57.143 0.00 0.00 0.00 3.86
2142 2305 0.316841 GGAGGAGACGATGATGAGGC 59.683 60.000 0.00 0.00 0.00 4.70
2143 2306 0.316841 GAGGAGACGATGATGAGGCC 59.683 60.000 0.00 0.00 0.00 5.19
2144 2307 0.105760 AGGAGACGATGATGAGGCCT 60.106 55.000 3.86 3.86 0.00 5.19
2145 2308 0.755686 GGAGACGATGATGAGGCCTT 59.244 55.000 6.77 0.00 0.00 4.35
2146 2309 1.139853 GGAGACGATGATGAGGCCTTT 59.860 52.381 6.77 0.00 0.00 3.11
2147 2310 2.208431 GAGACGATGATGAGGCCTTTG 58.792 52.381 6.77 0.00 0.00 2.77
2148 2311 1.833630 AGACGATGATGAGGCCTTTGA 59.166 47.619 6.77 0.00 0.00 2.69
2149 2312 2.158986 AGACGATGATGAGGCCTTTGAG 60.159 50.000 6.77 0.00 0.00 3.02
2150 2313 1.833630 ACGATGATGAGGCCTTTGAGA 59.166 47.619 6.77 0.00 0.00 3.27
2151 2314 2.208431 CGATGATGAGGCCTTTGAGAC 58.792 52.381 6.77 0.00 0.00 3.36
2152 2315 2.208431 GATGATGAGGCCTTTGAGACG 58.792 52.381 6.77 0.00 0.00 4.18
2153 2316 0.391661 TGATGAGGCCTTTGAGACGC 60.392 55.000 6.77 0.00 0.00 5.19
2154 2317 0.107945 GATGAGGCCTTTGAGACGCT 60.108 55.000 6.77 0.00 0.00 5.07
2155 2318 0.392193 ATGAGGCCTTTGAGACGCTG 60.392 55.000 6.77 0.00 0.00 5.18
2156 2319 1.743252 GAGGCCTTTGAGACGCTGG 60.743 63.158 6.77 0.00 0.00 4.85
2157 2320 2.172483 GAGGCCTTTGAGACGCTGGA 62.172 60.000 6.77 0.00 0.00 3.86
2158 2321 1.078143 GGCCTTTGAGACGCTGGAT 60.078 57.895 0.00 0.00 0.00 3.41
2159 2322 1.372087 GGCCTTTGAGACGCTGGATG 61.372 60.000 0.00 0.00 0.00 3.51
2160 2323 1.372087 GCCTTTGAGACGCTGGATGG 61.372 60.000 0.00 0.00 0.00 3.51
2161 2324 1.372087 CCTTTGAGACGCTGGATGGC 61.372 60.000 0.00 0.00 0.00 4.40
2162 2325 1.372087 CTTTGAGACGCTGGATGGCC 61.372 60.000 0.00 0.00 0.00 5.36
2163 2326 2.819984 TTTGAGACGCTGGATGGCCC 62.820 60.000 0.00 0.00 0.00 5.80
2164 2327 4.899239 GAGACGCTGGATGGCCCG 62.899 72.222 0.00 0.00 37.93 6.13
2166 2329 4.241555 GACGCTGGATGGCCCGAT 62.242 66.667 0.00 0.00 37.93 4.18
2167 2330 4.241555 ACGCTGGATGGCCCGATC 62.242 66.667 0.00 0.00 37.93 3.69
2168 2331 4.996434 CGCTGGATGGCCCGATCC 62.996 72.222 14.06 14.06 42.23 3.36
2169 2332 3.564218 GCTGGATGGCCCGATCCT 61.564 66.667 19.99 0.00 42.36 3.24
2170 2333 2.429058 CTGGATGGCCCGATCCTG 59.571 66.667 19.99 16.32 42.36 3.86
2171 2334 3.839353 CTGGATGGCCCGATCCTGC 62.839 68.421 19.99 0.00 42.36 4.85
2172 2335 4.996434 GGATGGCCCGATCCTGCG 62.996 72.222 13.73 0.00 39.20 5.18
2196 2359 4.863925 GCGGCGGACAGAGCTCTC 62.864 72.222 14.96 3.49 34.52 3.20
2197 2360 4.200283 CGGCGGACAGAGCTCTCC 62.200 72.222 14.96 12.75 34.52 3.71
2200 2363 4.200283 CGGACAGAGCTCTCCGCC 62.200 72.222 25.85 19.57 40.39 6.13
2201 2364 4.200283 GGACAGAGCTCTCCGCCG 62.200 72.222 14.96 4.70 40.39 6.46
2202 2365 4.863925 GACAGAGCTCTCCGCCGC 62.864 72.222 14.96 0.00 40.39 6.53
2215 2378 4.083862 GCCGCGTCCCTCTTCCTT 62.084 66.667 4.92 0.00 0.00 3.36
2216 2379 2.125512 CCGCGTCCCTCTTCCTTG 60.126 66.667 4.92 0.00 0.00 3.61
2217 2380 2.646175 CCGCGTCCCTCTTCCTTGA 61.646 63.158 4.92 0.00 0.00 3.02
2218 2381 1.446272 CGCGTCCCTCTTCCTTGAC 60.446 63.158 0.00 0.00 0.00 3.18
2219 2382 1.079057 GCGTCCCTCTTCCTTGACC 60.079 63.158 0.00 0.00 0.00 4.02
2220 2383 1.215647 CGTCCCTCTTCCTTGACCG 59.784 63.158 0.00 0.00 0.00 4.79
2221 2384 1.079057 GTCCCTCTTCCTTGACCGC 60.079 63.158 0.00 0.00 0.00 5.68
2222 2385 1.229209 TCCCTCTTCCTTGACCGCT 60.229 57.895 0.00 0.00 0.00 5.52
2223 2386 1.078848 CCCTCTTCCTTGACCGCTG 60.079 63.158 0.00 0.00 0.00 5.18
2224 2387 1.743252 CCTCTTCCTTGACCGCTGC 60.743 63.158 0.00 0.00 0.00 5.25
2225 2388 1.743252 CTCTTCCTTGACCGCTGCC 60.743 63.158 0.00 0.00 0.00 4.85
2226 2389 2.177594 CTCTTCCTTGACCGCTGCCT 62.178 60.000 0.00 0.00 0.00 4.75
2227 2390 1.743252 CTTCCTTGACCGCTGCCTC 60.743 63.158 0.00 0.00 0.00 4.70
2228 2391 3.254024 TTCCTTGACCGCTGCCTCC 62.254 63.158 0.00 0.00 0.00 4.30
2229 2392 4.785453 CCTTGACCGCTGCCTCCC 62.785 72.222 0.00 0.00 0.00 4.30
2270 2433 4.954970 CGGGGCGGGCATAAGCAT 62.955 66.667 3.27 0.00 44.61 3.79
2271 2434 3.297620 GGGGCGGGCATAAGCATG 61.298 66.667 3.27 0.00 44.61 4.06
2272 2435 2.519302 GGGCGGGCATAAGCATGT 60.519 61.111 3.27 0.00 44.61 3.21
2273 2436 2.127232 GGGCGGGCATAAGCATGTT 61.127 57.895 3.27 0.00 44.61 2.71
2274 2437 1.066257 GGCGGGCATAAGCATGTTG 59.934 57.895 0.00 0.00 44.61 3.33
2275 2438 1.066257 GCGGGCATAAGCATGTTGG 59.934 57.895 0.00 0.00 44.61 3.77
2276 2439 1.735360 CGGGCATAAGCATGTTGGG 59.265 57.895 0.00 0.00 44.61 4.12
2277 2440 1.737355 CGGGCATAAGCATGTTGGGG 61.737 60.000 0.00 0.00 44.61 4.96
2278 2441 0.396974 GGGCATAAGCATGTTGGGGA 60.397 55.000 0.00 0.00 44.61 4.81
2279 2442 1.484038 GGCATAAGCATGTTGGGGAA 58.516 50.000 0.00 0.00 44.61 3.97
2280 2443 1.136891 GGCATAAGCATGTTGGGGAAC 59.863 52.381 0.00 0.00 44.61 3.62
2281 2444 1.202290 GCATAAGCATGTTGGGGAACG 60.202 52.381 0.00 0.00 41.58 3.95
2282 2445 2.091541 CATAAGCATGTTGGGGAACGT 58.908 47.619 0.00 0.00 0.00 3.99
2283 2446 3.275143 CATAAGCATGTTGGGGAACGTA 58.725 45.455 0.00 0.00 0.00 3.57
2284 2447 1.821216 AAGCATGTTGGGGAACGTAG 58.179 50.000 0.00 0.00 0.00 3.51
2285 2448 0.676782 AGCATGTTGGGGAACGTAGC 60.677 55.000 0.00 0.00 0.00 3.58
2286 2449 0.958382 GCATGTTGGGGAACGTAGCA 60.958 55.000 0.00 0.00 0.00 3.49
2287 2450 1.086696 CATGTTGGGGAACGTAGCAG 58.913 55.000 0.00 0.00 0.00 4.24
2288 2451 0.981183 ATGTTGGGGAACGTAGCAGA 59.019 50.000 0.00 0.00 0.00 4.26
2289 2452 0.759959 TGTTGGGGAACGTAGCAGAA 59.240 50.000 0.00 0.00 0.00 3.02
2290 2453 1.141254 TGTTGGGGAACGTAGCAGAAA 59.859 47.619 0.00 0.00 0.00 2.52
2291 2454 2.224670 TGTTGGGGAACGTAGCAGAAAT 60.225 45.455 0.00 0.00 0.00 2.17
2292 2455 2.817844 GTTGGGGAACGTAGCAGAAATT 59.182 45.455 0.00 0.00 0.00 1.82
2293 2456 2.706890 TGGGGAACGTAGCAGAAATTC 58.293 47.619 0.00 0.00 0.00 2.17
2294 2457 2.039216 TGGGGAACGTAGCAGAAATTCA 59.961 45.455 0.00 0.00 0.00 2.57
2295 2458 3.078837 GGGGAACGTAGCAGAAATTCAA 58.921 45.455 0.00 0.00 0.00 2.69
2296 2459 3.504520 GGGGAACGTAGCAGAAATTCAAA 59.495 43.478 0.00 0.00 0.00 2.69
2297 2460 4.022676 GGGGAACGTAGCAGAAATTCAAAA 60.023 41.667 0.00 0.00 0.00 2.44
2298 2461 5.336451 GGGGAACGTAGCAGAAATTCAAAAT 60.336 40.000 0.00 0.00 0.00 1.82
2299 2462 6.156519 GGGAACGTAGCAGAAATTCAAAATT 58.843 36.000 0.00 0.00 0.00 1.82
2300 2463 6.645003 GGGAACGTAGCAGAAATTCAAAATTT 59.355 34.615 0.00 0.00 0.00 1.82
2301 2464 7.170828 GGGAACGTAGCAGAAATTCAAAATTTT 59.829 33.333 0.00 0.00 0.00 1.82
2302 2465 8.214472 GGAACGTAGCAGAAATTCAAAATTTTC 58.786 33.333 0.00 0.00 33.08 2.29
2303 2466 8.871686 AACGTAGCAGAAATTCAAAATTTTCT 57.128 26.923 0.00 0.00 41.61 2.52
2304 2467 9.959749 AACGTAGCAGAAATTCAAAATTTTCTA 57.040 25.926 0.00 0.00 39.53 2.10
2305 2468 9.394477 ACGTAGCAGAAATTCAAAATTTTCTAC 57.606 29.630 0.00 5.68 39.53 2.59
2306 2469 8.567221 CGTAGCAGAAATTCAAAATTTTCTACG 58.433 33.333 19.51 19.51 39.53 3.51
2307 2470 7.338440 AGCAGAAATTCAAAATTTTCTACGC 57.662 32.000 0.00 0.00 39.53 4.42
2308 2471 6.922957 AGCAGAAATTCAAAATTTTCTACGCA 59.077 30.769 0.00 0.00 39.53 5.24
2309 2472 7.599998 AGCAGAAATTCAAAATTTTCTACGCAT 59.400 29.630 0.00 0.00 39.53 4.73
2310 2473 7.894753 GCAGAAATTCAAAATTTTCTACGCATC 59.105 33.333 0.00 0.00 39.53 3.91
2311 2474 8.914654 CAGAAATTCAAAATTTTCTACGCATCA 58.085 29.630 0.00 0.00 39.53 3.07
2312 2475 8.915654 AGAAATTCAAAATTTTCTACGCATCAC 58.084 29.630 0.00 0.00 39.70 3.06
2313 2476 7.581011 AATTCAAAATTTTCTACGCATCACC 57.419 32.000 0.00 0.00 0.00 4.02
2314 2477 5.697473 TCAAAATTTTCTACGCATCACCA 57.303 34.783 0.00 0.00 0.00 4.17
2315 2478 6.078202 TCAAAATTTTCTACGCATCACCAA 57.922 33.333 0.00 0.00 0.00 3.67
2316 2479 6.148948 TCAAAATTTTCTACGCATCACCAAG 58.851 36.000 0.00 0.00 0.00 3.61
2317 2480 5.957842 AAATTTTCTACGCATCACCAAGA 57.042 34.783 0.00 0.00 0.00 3.02
2318 2481 6.515272 AAATTTTCTACGCATCACCAAGAT 57.485 33.333 0.00 0.00 37.48 2.40
2319 2482 5.741388 ATTTTCTACGCATCACCAAGATC 57.259 39.130 0.00 0.00 33.72 2.75
2320 2483 3.885724 TTCTACGCATCACCAAGATCA 57.114 42.857 0.00 0.00 33.72 2.92
2321 2484 3.885724 TCTACGCATCACCAAGATCAA 57.114 42.857 0.00 0.00 33.72 2.57
2322 2485 4.406648 TCTACGCATCACCAAGATCAAT 57.593 40.909 0.00 0.00 33.72 2.57
2323 2486 4.371786 TCTACGCATCACCAAGATCAATC 58.628 43.478 0.00 0.00 33.72 2.67
2324 2487 3.272574 ACGCATCACCAAGATCAATCT 57.727 42.857 0.00 0.00 39.22 2.40
2325 2488 4.406648 ACGCATCACCAAGATCAATCTA 57.593 40.909 0.00 0.00 35.76 1.98
2326 2489 4.965814 ACGCATCACCAAGATCAATCTAT 58.034 39.130 0.00 0.00 35.76 1.98
2327 2490 4.753610 ACGCATCACCAAGATCAATCTATG 59.246 41.667 0.00 0.00 35.76 2.23
2328 2491 4.153655 CGCATCACCAAGATCAATCTATGG 59.846 45.833 14.46 14.46 39.18 2.74
2329 2492 5.311265 GCATCACCAAGATCAATCTATGGA 58.689 41.667 19.34 6.96 37.92 3.41
2330 2493 5.411977 GCATCACCAAGATCAATCTATGGAG 59.588 44.000 19.34 14.57 37.92 3.86
2331 2494 6.531923 CATCACCAAGATCAATCTATGGAGT 58.468 40.000 19.34 8.56 37.92 3.85
2332 2495 6.566079 TCACCAAGATCAATCTATGGAGTT 57.434 37.500 19.34 4.10 37.92 3.01
2333 2496 6.962182 TCACCAAGATCAATCTATGGAGTTT 58.038 36.000 19.34 3.87 37.92 2.66
2334 2497 8.089625 TCACCAAGATCAATCTATGGAGTTTA 57.910 34.615 19.34 3.42 37.92 2.01
2335 2498 7.987458 TCACCAAGATCAATCTATGGAGTTTAC 59.013 37.037 19.34 0.00 37.92 2.01
2336 2499 7.989741 CACCAAGATCAATCTATGGAGTTTACT 59.010 37.037 19.34 0.00 37.92 2.24
2337 2500 9.213777 ACCAAGATCAATCTATGGAGTTTACTA 57.786 33.333 19.34 0.00 37.92 1.82
2338 2501 9.703892 CCAAGATCAATCTATGGAGTTTACTAG 57.296 37.037 12.26 0.00 37.31 2.57
2339 2502 9.202273 CAAGATCAATCTATGGAGTTTACTAGC 57.798 37.037 0.00 0.00 35.76 3.42
2340 2503 8.484214 AGATCAATCTATGGAGTTTACTAGCA 57.516 34.615 0.00 0.00 34.85 3.49
2341 2504 8.928448 AGATCAATCTATGGAGTTTACTAGCAA 58.072 33.333 0.00 0.00 34.85 3.91
2342 2505 8.894768 ATCAATCTATGGAGTTTACTAGCAAC 57.105 34.615 0.00 0.00 0.00 4.17
2343 2506 6.978659 TCAATCTATGGAGTTTACTAGCAACG 59.021 38.462 0.00 0.00 0.00 4.10
2344 2507 6.710597 ATCTATGGAGTTTACTAGCAACGA 57.289 37.500 0.00 0.00 0.00 3.85
2345 2508 6.132791 TCTATGGAGTTTACTAGCAACGAG 57.867 41.667 0.00 0.00 0.00 4.18
2346 2509 5.884232 TCTATGGAGTTTACTAGCAACGAGA 59.116 40.000 0.00 0.00 0.00 4.04
2347 2510 4.436242 TGGAGTTTACTAGCAACGAGAG 57.564 45.455 0.00 0.00 0.00 3.20
2348 2511 3.192844 TGGAGTTTACTAGCAACGAGAGG 59.807 47.826 0.00 0.00 0.00 3.69
2349 2512 3.429135 GGAGTTTACTAGCAACGAGAGGG 60.429 52.174 0.00 0.00 0.00 4.30
2350 2513 3.428532 AGTTTACTAGCAACGAGAGGGA 58.571 45.455 0.00 0.00 0.00 4.20
2351 2514 3.830755 AGTTTACTAGCAACGAGAGGGAA 59.169 43.478 0.00 0.00 0.00 3.97
2352 2515 4.082136 AGTTTACTAGCAACGAGAGGGAAG 60.082 45.833 0.00 0.00 0.00 3.46
2353 2516 1.187087 ACTAGCAACGAGAGGGAAGG 58.813 55.000 0.00 0.00 0.00 3.46
2354 2517 1.272536 ACTAGCAACGAGAGGGAAGGA 60.273 52.381 0.00 0.00 0.00 3.36
2355 2518 1.407258 CTAGCAACGAGAGGGAAGGAG 59.593 57.143 0.00 0.00 0.00 3.69
2356 2519 0.543174 AGCAACGAGAGGGAAGGAGT 60.543 55.000 0.00 0.00 0.00 3.85
2357 2520 0.390472 GCAACGAGAGGGAAGGAGTG 60.390 60.000 0.00 0.00 0.00 3.51
2358 2521 0.390472 CAACGAGAGGGAAGGAGTGC 60.390 60.000 0.00 0.00 0.00 4.40
2359 2522 0.832135 AACGAGAGGGAAGGAGTGCA 60.832 55.000 0.00 0.00 0.00 4.57
2360 2523 0.616111 ACGAGAGGGAAGGAGTGCAT 60.616 55.000 0.00 0.00 0.00 3.96
2361 2524 0.103937 CGAGAGGGAAGGAGTGCATC 59.896 60.000 0.00 0.00 0.00 3.91
2362 2525 1.494960 GAGAGGGAAGGAGTGCATCT 58.505 55.000 0.00 0.00 41.89 2.90
2363 2526 2.672098 GAGAGGGAAGGAGTGCATCTA 58.328 52.381 0.00 0.00 38.99 1.98
2364 2527 2.364002 GAGAGGGAAGGAGTGCATCTAC 59.636 54.545 0.00 0.00 38.99 2.59
2365 2528 2.111384 GAGGGAAGGAGTGCATCTACA 58.889 52.381 0.00 0.00 0.00 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
156 159 0.802222 CGAACACGCACCATCGAGAT 60.802 55.000 0.00 0.00 37.48 2.75
507 520 3.454812 ACTCTCCTAACAACCACACAAGT 59.545 43.478 0.00 0.00 0.00 3.16
508 521 4.073293 ACTCTCCTAACAACCACACAAG 57.927 45.455 0.00 0.00 0.00 3.16
718 733 1.070134 GGCTGTGTTGTGTGGAGTCTA 59.930 52.381 0.00 0.00 0.00 2.59
728 743 3.269347 GCGACGTGGCTGTGTTGT 61.269 61.111 15.90 0.00 0.00 3.32
746 761 4.738541 GCATCTGATGTATTTGGGCCTTTG 60.739 45.833 18.19 0.00 0.00 2.77
765 785 3.563088 TCGCCGTTCGCATGCATC 61.563 61.111 19.57 6.11 37.30 3.91
787 807 2.351641 CGGCCTTACTGTACAACACGTA 60.352 50.000 0.00 0.00 0.00 3.57
788 808 1.603678 CGGCCTTACTGTACAACACGT 60.604 52.381 0.00 0.00 0.00 4.49
789 809 1.065358 CGGCCTTACTGTACAACACG 58.935 55.000 0.00 0.00 0.00 4.49
792 812 1.022982 GGCCGGCCTTACTGTACAAC 61.023 60.000 38.76 6.46 0.00 3.32
793 813 1.297364 GGCCGGCCTTACTGTACAA 59.703 57.895 38.76 0.00 0.00 2.41
795 815 1.449070 GTGGCCGGCCTTACTGTAC 60.449 63.158 43.34 28.38 36.94 2.90
796 816 2.983791 GTGGCCGGCCTTACTGTA 59.016 61.111 43.34 21.57 36.94 2.74
846 866 1.518572 CACCATAGGACGCGACACC 60.519 63.158 15.93 13.45 0.00 4.16
854 874 2.482326 GCAGGTTGCACCATAGGAC 58.518 57.895 7.86 0.00 44.26 3.85
868 888 5.010012 GTGGTTGATGATTTAATAGGGCAGG 59.990 44.000 0.00 0.00 0.00 4.85
900 923 2.096406 CTGTTTCGGACGCATGCG 59.904 61.111 36.79 36.79 46.03 4.73
905 928 1.348594 GCTATGCTGTTTCGGACGC 59.651 57.895 0.00 0.00 0.00 5.19
909 932 1.199789 TGCTTTGCTATGCTGTTTCGG 59.800 47.619 7.48 0.00 0.00 4.30
920 943 1.451337 TTGTGCCGCTTGCTTTGCTA 61.451 50.000 0.00 0.00 42.00 3.49
940 963 1.003597 CCTGACTGCTGAGCTTGCT 60.004 57.895 5.83 0.00 0.00 3.91
941 964 0.604780 TTCCTGACTGCTGAGCTTGC 60.605 55.000 5.83 5.80 0.00 4.01
951 974 2.743928 GCGTGCCCTTCCTGACTG 60.744 66.667 0.00 0.00 0.00 3.51
952 975 3.241530 TGCGTGCCCTTCCTGACT 61.242 61.111 0.00 0.00 0.00 3.41
953 976 2.743928 CTGCGTGCCCTTCCTGAC 60.744 66.667 0.00 0.00 0.00 3.51
954 977 4.704833 GCTGCGTGCCCTTCCTGA 62.705 66.667 0.00 0.00 35.15 3.86
969 992 1.598130 GTTGGTTCGCTGAGGTGCT 60.598 57.895 0.00 0.00 0.00 4.40
980 1003 5.730568 GCCATCTATCGATTGTTGTTGGTTC 60.731 44.000 1.71 0.00 0.00 3.62
982 1005 3.627577 GCCATCTATCGATTGTTGTTGGT 59.372 43.478 1.71 0.00 0.00 3.67
989 1012 3.007398 GGAGGAAGCCATCTATCGATTGT 59.993 47.826 1.71 0.00 0.00 2.71
993 1016 1.248486 CGGAGGAAGCCATCTATCGA 58.752 55.000 0.00 0.00 0.00 3.59
1150 1209 1.210204 TCCTCTGGCAAAGGCTCCAT 61.210 55.000 0.68 0.00 40.87 3.41
1151 1210 1.847506 TCCTCTGGCAAAGGCTCCA 60.848 57.895 0.68 0.00 40.87 3.86
1340 1399 3.071837 TGCTACCATCGGGCGACA 61.072 61.111 0.00 0.00 37.90 4.35
1341 1400 2.585247 GTGCTACCATCGGGCGAC 60.585 66.667 0.00 0.00 37.90 5.19
1418 1477 2.430956 CGTATGCAAAAGCTACGCAAG 58.569 47.619 8.49 1.30 39.48 4.01
1419 1478 1.129624 CCGTATGCAAAAGCTACGCAA 59.870 47.619 10.56 0.00 39.48 4.85
1420 1479 0.724549 CCGTATGCAAAAGCTACGCA 59.275 50.000 10.56 7.04 37.50 5.24
1421 1480 0.725117 ACCGTATGCAAAAGCTACGC 59.275 50.000 10.56 0.00 37.50 4.42
1503 1596 5.538813 ACCTGAGAGAATACAACAGTACACA 59.461 40.000 0.00 0.00 0.00 3.72
1524 1618 2.435586 GCTGCATGCTCGTGACCT 60.436 61.111 20.33 0.00 38.95 3.85
1641 1742 3.485216 CGCGTTTGAGGGTCATATTTGTC 60.485 47.826 0.00 0.00 0.00 3.18
1666 1792 4.848562 TGGATATGAGATACACGGTCAC 57.151 45.455 0.00 0.00 0.00 3.67
1692 1849 9.586435 CGTTGCATGATTTAGTATGGATATAGA 57.414 33.333 0.00 0.00 0.00 1.98
1693 1850 9.371136 ACGTTGCATGATTTAGTATGGATATAG 57.629 33.333 0.00 0.00 0.00 1.31
1696 1853 6.364976 CGACGTTGCATGATTTAGTATGGATA 59.635 38.462 0.00 0.00 0.00 2.59
1700 1857 5.635549 TCGACGTTGCATGATTTAGTATG 57.364 39.130 0.00 0.00 0.00 2.39
1704 1861 7.180079 ACTTTAATCGACGTTGCATGATTTAG 58.820 34.615 0.00 4.17 33.42 1.85
1731 1888 5.179368 GTGCTTGTCTGTTTGCTAATCTACA 59.821 40.000 0.00 0.00 0.00 2.74
1735 1892 4.488126 TGTGCTTGTCTGTTTGCTAATC 57.512 40.909 0.00 0.00 0.00 1.75
1738 1895 5.063204 AGTATTGTGCTTGTCTGTTTGCTA 58.937 37.500 0.00 0.00 0.00 3.49
1745 1902 6.245115 TGATGAAAGTATTGTGCTTGTCTG 57.755 37.500 0.00 0.00 0.00 3.51
1746 1903 6.882610 TTGATGAAAGTATTGTGCTTGTCT 57.117 33.333 0.00 0.00 0.00 3.41
1751 1908 7.119699 TCGATCTTTTGATGAAAGTATTGTGCT 59.880 33.333 0.00 0.00 44.17 4.40
1752 1909 7.243487 TCGATCTTTTGATGAAAGTATTGTGC 58.757 34.615 0.00 0.00 44.17 4.57
1755 1918 9.778993 ACATTCGATCTTTTGATGAAAGTATTG 57.221 29.630 0.00 0.00 44.17 1.90
1763 1926 8.499967 TCGTTTAAACATTCGATCTTTTGATGA 58.500 29.630 18.07 0.00 39.67 2.92
1766 1929 7.073265 GGTCGTTTAAACATTCGATCTTTTGA 58.927 34.615 18.07 0.08 34.93 2.69
1775 1938 6.140110 ACTTTGATGGTCGTTTAAACATTCG 58.860 36.000 18.07 4.50 0.00 3.34
1777 1940 7.484975 TGAACTTTGATGGTCGTTTAAACATT 58.515 30.769 18.07 0.00 0.00 2.71
1783 1946 5.293814 TCGTTTGAACTTTGATGGTCGTTTA 59.706 36.000 0.00 0.00 0.00 2.01
1793 1956 5.963004 CGATCTTTTGTCGTTTGAACTTTGA 59.037 36.000 0.00 0.00 34.56 2.69
1798 1961 5.907391 ACATTCGATCTTTTGTCGTTTGAAC 59.093 36.000 0.00 0.00 39.91 3.18
1799 1962 6.055231 ACATTCGATCTTTTGTCGTTTGAA 57.945 33.333 0.00 0.00 39.91 2.69
1800 1963 5.666969 ACATTCGATCTTTTGTCGTTTGA 57.333 34.783 0.00 0.00 39.91 2.69
1801 1964 6.732181 AAACATTCGATCTTTTGTCGTTTG 57.268 33.333 0.00 0.00 39.91 2.93
1802 1965 8.739461 GTTTAAACATTCGATCTTTTGTCGTTT 58.261 29.630 13.51 0.00 39.91 3.60
1803 1966 7.111041 CGTTTAAACATTCGATCTTTTGTCGTT 59.889 33.333 18.07 0.00 39.91 3.85
1804 1967 6.572254 CGTTTAAACATTCGATCTTTTGTCGT 59.428 34.615 18.07 0.00 39.91 4.34
1805 1968 6.788458 TCGTTTAAACATTCGATCTTTTGTCG 59.212 34.615 18.07 0.00 40.30 4.35
1806 1969 7.059147 GGTCGTTTAAACATTCGATCTTTTGTC 59.941 37.037 18.07 0.00 34.93 3.18
1807 1970 6.854381 GGTCGTTTAAACATTCGATCTTTTGT 59.146 34.615 18.07 0.00 34.93 2.83
1808 1971 6.853872 TGGTCGTTTAAACATTCGATCTTTTG 59.146 34.615 18.07 0.00 34.99 2.44
1809 1972 6.961576 TGGTCGTTTAAACATTCGATCTTTT 58.038 32.000 18.07 0.00 34.99 2.27
1810 1973 6.548441 TGGTCGTTTAAACATTCGATCTTT 57.452 33.333 18.07 0.00 34.99 2.52
1811 1974 6.370442 TGATGGTCGTTTAAACATTCGATCTT 59.630 34.615 18.07 7.96 34.99 2.40
1812 1975 5.872617 TGATGGTCGTTTAAACATTCGATCT 59.127 36.000 18.07 1.23 34.99 2.75
1813 1976 6.102006 TGATGGTCGTTTAAACATTCGATC 57.898 37.500 18.07 16.42 34.93 3.69
1814 1977 6.489127 TTGATGGTCGTTTAAACATTCGAT 57.511 33.333 18.07 9.58 34.93 3.59
1815 1978 5.926214 TTGATGGTCGTTTAAACATTCGA 57.074 34.783 18.07 6.83 0.00 3.71
1816 1979 6.140110 ACTTTGATGGTCGTTTAAACATTCG 58.860 36.000 18.07 4.50 0.00 3.34
1817 1980 7.646130 TGAACTTTGATGGTCGTTTAAACATTC 59.354 33.333 18.07 7.36 0.00 2.67
1818 1981 7.484975 TGAACTTTGATGGTCGTTTAAACATT 58.515 30.769 18.07 0.00 0.00 2.71
1819 1982 7.033530 TGAACTTTGATGGTCGTTTAAACAT 57.966 32.000 18.07 4.09 0.00 2.71
1820 1983 6.438259 TGAACTTTGATGGTCGTTTAAACA 57.562 33.333 18.07 3.11 0.00 2.83
1821 1984 7.512426 CGTTTGAACTTTGATGGTCGTTTAAAC 60.512 37.037 8.35 8.35 39.94 2.01
1822 1985 6.469595 CGTTTGAACTTTGATGGTCGTTTAAA 59.530 34.615 0.00 0.00 0.00 1.52
1823 1986 5.966503 CGTTTGAACTTTGATGGTCGTTTAA 59.033 36.000 0.00 0.00 0.00 1.52
1824 1987 5.293814 TCGTTTGAACTTTGATGGTCGTTTA 59.706 36.000 0.00 0.00 0.00 2.01
1825 1988 4.095185 TCGTTTGAACTTTGATGGTCGTTT 59.905 37.500 0.00 0.00 0.00 3.60
1826 1989 3.623960 TCGTTTGAACTTTGATGGTCGTT 59.376 39.130 0.00 0.00 0.00 3.85
1827 1990 3.001939 GTCGTTTGAACTTTGATGGTCGT 59.998 43.478 0.00 0.00 0.00 4.34
1828 1991 3.541711 GTCGTTTGAACTTTGATGGTCG 58.458 45.455 0.00 0.00 0.00 4.79
1829 1992 3.541711 CGTCGTTTGAACTTTGATGGTC 58.458 45.455 0.00 0.00 0.00 4.02
1830 1993 2.289547 CCGTCGTTTGAACTTTGATGGT 59.710 45.455 0.00 0.00 32.31 3.55
1831 1994 2.546368 TCCGTCGTTTGAACTTTGATGG 59.454 45.455 0.00 0.00 37.13 3.51
1832 1995 3.001838 TGTCCGTCGTTTGAACTTTGATG 59.998 43.478 0.00 0.00 0.00 3.07
1833 1996 3.199677 TGTCCGTCGTTTGAACTTTGAT 58.800 40.909 0.00 0.00 0.00 2.57
1834 1997 2.619147 TGTCCGTCGTTTGAACTTTGA 58.381 42.857 0.00 0.00 0.00 2.69
1835 1998 3.392769 TTGTCCGTCGTTTGAACTTTG 57.607 42.857 0.00 0.00 0.00 2.77
1836 1999 4.625972 AATTGTCCGTCGTTTGAACTTT 57.374 36.364 0.00 0.00 0.00 2.66
1837 2000 4.095185 TCAAATTGTCCGTCGTTTGAACTT 59.905 37.500 5.72 0.00 37.56 2.66
1838 2001 3.623960 TCAAATTGTCCGTCGTTTGAACT 59.376 39.130 5.72 0.00 37.56 3.01
1839 2002 3.942739 TCAAATTGTCCGTCGTTTGAAC 58.057 40.909 5.72 0.00 37.56 3.18
1870 2033 7.985634 TGCTTCAATTTAGTTTCAAGTTGTC 57.014 32.000 2.11 0.00 0.00 3.18
1872 2035 7.847564 GCTTTGCTTCAATTTAGTTTCAAGTTG 59.152 33.333 0.00 0.00 0.00 3.16
1882 2045 5.240713 AGATCCGCTTTGCTTCAATTTAG 57.759 39.130 0.00 0.00 0.00 1.85
1887 2050 2.226437 GTGAAGATCCGCTTTGCTTCAA 59.774 45.455 0.00 0.00 45.61 2.69
1888 2051 1.806542 GTGAAGATCCGCTTTGCTTCA 59.193 47.619 0.00 0.00 43.00 3.02
1889 2052 1.131315 GGTGAAGATCCGCTTTGCTTC 59.869 52.381 0.00 0.00 36.83 3.86
1890 2053 1.168714 GGTGAAGATCCGCTTTGCTT 58.831 50.000 0.00 0.00 36.83 3.91
1891 2054 0.036732 TGGTGAAGATCCGCTTTGCT 59.963 50.000 0.00 0.00 36.83 3.91
1892 2055 0.169009 GTGGTGAAGATCCGCTTTGC 59.831 55.000 0.00 0.00 36.83 3.68
1893 2056 1.813513 AGTGGTGAAGATCCGCTTTG 58.186 50.000 0.00 0.00 42.25 2.77
1896 2059 0.250513 GGAAGTGGTGAAGATCCGCT 59.749 55.000 0.00 0.00 46.12 5.52
1897 2060 1.084370 CGGAAGTGGTGAAGATCCGC 61.084 60.000 0.00 0.00 45.41 5.54
1898 2061 3.050703 CGGAAGTGGTGAAGATCCG 57.949 57.895 0.00 0.00 45.88 4.18
1899 2062 0.902531 TCCGGAAGTGGTGAAGATCC 59.097 55.000 0.00 0.00 0.00 3.36
1900 2063 2.762535 TTCCGGAAGTGGTGAAGATC 57.237 50.000 14.35 0.00 0.00 2.75
1901 2064 3.721087 ATTTCCGGAAGTGGTGAAGAT 57.279 42.857 17.97 1.41 0.00 2.40
1902 2065 3.502123 AATTTCCGGAAGTGGTGAAGA 57.498 42.857 17.97 0.00 0.00 2.87
1903 2066 3.568007 TGAAATTTCCGGAAGTGGTGAAG 59.432 43.478 17.97 0.00 0.00 3.02
1904 2067 3.316868 GTGAAATTTCCGGAAGTGGTGAA 59.683 43.478 17.97 0.22 0.00 3.18
1905 2068 2.882137 GTGAAATTTCCGGAAGTGGTGA 59.118 45.455 17.97 1.06 0.00 4.02
1906 2069 2.030274 GGTGAAATTTCCGGAAGTGGTG 60.030 50.000 17.97 0.00 0.00 4.17
1907 2070 2.235891 GGTGAAATTTCCGGAAGTGGT 58.764 47.619 17.97 6.42 0.00 4.16
1908 2071 2.030274 GTGGTGAAATTTCCGGAAGTGG 60.030 50.000 17.97 0.00 0.00 4.00
1909 2072 2.884639 AGTGGTGAAATTTCCGGAAGTG 59.115 45.455 17.97 0.00 0.00 3.16
1910 2073 3.223674 AGTGGTGAAATTTCCGGAAGT 57.776 42.857 17.97 12.31 0.00 3.01
1911 2074 3.057526 GGAAGTGGTGAAATTTCCGGAAG 60.058 47.826 17.97 0.00 30.77 3.46
1912 2075 2.888414 GGAAGTGGTGAAATTTCCGGAA 59.112 45.455 14.35 14.35 30.77 4.30
1913 2076 2.510613 GGAAGTGGTGAAATTTCCGGA 58.489 47.619 15.48 0.00 30.77 5.14
1916 2079 2.510613 TCCGGAAGTGGTGAAATTTCC 58.489 47.619 15.48 6.89 36.56 3.13
1917 2080 4.577834 TTTCCGGAAGTGGTGAAATTTC 57.422 40.909 17.97 11.41 0.00 2.17
1918 2081 5.545063 AATTTCCGGAAGTGGTGAAATTT 57.455 34.783 17.97 0.00 41.95 1.82
1919 2082 6.658188 TTAATTTCCGGAAGTGGTGAAATT 57.342 33.333 17.97 13.49 44.86 1.82
1920 2083 6.658188 TTTAATTTCCGGAAGTGGTGAAAT 57.342 33.333 17.97 2.20 38.66 2.17
1921 2084 6.658188 ATTTAATTTCCGGAAGTGGTGAAA 57.342 33.333 17.97 12.93 0.00 2.69
1922 2085 6.265649 TCAATTTAATTTCCGGAAGTGGTGAA 59.734 34.615 17.97 9.25 0.00 3.18
1923 2086 5.770663 TCAATTTAATTTCCGGAAGTGGTGA 59.229 36.000 17.97 12.33 0.00 4.02
1924 2087 6.019779 TCAATTTAATTTCCGGAAGTGGTG 57.980 37.500 17.97 10.32 0.00 4.17
1925 2088 6.658188 TTCAATTTAATTTCCGGAAGTGGT 57.342 33.333 17.97 2.91 0.00 4.16
1926 2089 5.576774 GCTTCAATTTAATTTCCGGAAGTGG 59.423 40.000 17.97 3.02 34.34 4.00
1927 2090 6.155827 TGCTTCAATTTAATTTCCGGAAGTG 58.844 36.000 17.97 4.74 34.34 3.16
1928 2091 6.339587 TGCTTCAATTTAATTTCCGGAAGT 57.660 33.333 17.97 12.31 34.34 3.01
1929 2092 7.622048 GCTTTGCTTCAATTTAATTTCCGGAAG 60.622 37.037 17.97 3.08 34.81 3.46
1930 2093 6.147000 GCTTTGCTTCAATTTAATTTCCGGAA 59.853 34.615 14.35 14.35 0.00 4.30
1931 2094 5.637387 GCTTTGCTTCAATTTAATTTCCGGA 59.363 36.000 0.00 0.00 0.00 5.14
1932 2095 5.444481 CGCTTTGCTTCAATTTAATTTCCGG 60.444 40.000 0.00 0.00 0.00 5.14
1933 2096 5.444481 CCGCTTTGCTTCAATTTAATTTCCG 60.444 40.000 0.00 0.00 0.00 4.30
1934 2097 5.637387 TCCGCTTTGCTTCAATTTAATTTCC 59.363 36.000 0.00 0.00 0.00 3.13
1935 2098 6.366061 AGTCCGCTTTGCTTCAATTTAATTTC 59.634 34.615 0.00 0.00 0.00 2.17
1936 2099 6.223120 AGTCCGCTTTGCTTCAATTTAATTT 58.777 32.000 0.00 0.00 0.00 1.82
1937 2100 5.783111 AGTCCGCTTTGCTTCAATTTAATT 58.217 33.333 0.00 0.00 0.00 1.40
1938 2101 5.391312 AGTCCGCTTTGCTTCAATTTAAT 57.609 34.783 0.00 0.00 0.00 1.40
1939 2102 4.846779 AGTCCGCTTTGCTTCAATTTAA 57.153 36.364 0.00 0.00 0.00 1.52
1940 2103 4.846779 AAGTCCGCTTTGCTTCAATTTA 57.153 36.364 0.00 0.00 0.00 1.40
1941 2104 3.733443 AAGTCCGCTTTGCTTCAATTT 57.267 38.095 0.00 0.00 0.00 1.82
1942 2105 3.068024 TGAAAGTCCGCTTTGCTTCAATT 59.932 39.130 0.00 0.00 44.25 2.32
1943 2106 2.622942 TGAAAGTCCGCTTTGCTTCAAT 59.377 40.909 0.00 0.00 44.25 2.57
1944 2107 2.020720 TGAAAGTCCGCTTTGCTTCAA 58.979 42.857 0.00 0.00 44.25 2.69
1945 2108 1.333619 GTGAAAGTCCGCTTTGCTTCA 59.666 47.619 0.00 0.00 44.25 3.02
1946 2109 1.335051 GGTGAAAGTCCGCTTTGCTTC 60.335 52.381 0.00 0.00 44.25 3.86
1947 2110 0.668535 GGTGAAAGTCCGCTTTGCTT 59.331 50.000 0.00 0.00 44.25 3.91
1948 2111 0.465460 TGGTGAAAGTCCGCTTTGCT 60.465 50.000 0.00 0.00 44.25 3.91
1949 2112 0.317854 GTGGTGAAAGTCCGCTTTGC 60.318 55.000 0.00 0.00 44.25 3.68
1950 2113 1.308998 AGTGGTGAAAGTCCGCTTTG 58.691 50.000 0.00 0.00 44.25 2.77
1951 2114 3.800826 AGTGGTGAAAGTCCGCTTT 57.199 47.368 0.00 0.00 46.63 3.51
1952 2115 3.800826 AAGTGGTGAAAGTCCGCTT 57.199 47.368 5.14 5.14 46.68 4.68
1953 2116 0.759346 AGAAGTGGTGAAAGTCCGCT 59.241 50.000 0.00 0.00 46.12 5.52
1954 2117 0.868406 CAGAAGTGGTGAAAGTCCGC 59.132 55.000 0.00 0.00 35.90 5.54
1955 2118 1.512926 CCAGAAGTGGTGAAAGTCCG 58.487 55.000 0.00 0.00 39.30 4.79
1956 2119 1.897560 CCCAGAAGTGGTGAAAGTCC 58.102 55.000 0.00 0.00 43.23 3.85
1957 2120 1.239347 GCCCAGAAGTGGTGAAAGTC 58.761 55.000 0.00 0.00 43.23 3.01
1958 2121 0.178990 GGCCCAGAAGTGGTGAAAGT 60.179 55.000 0.00 0.00 43.23 2.66
1959 2122 1.237285 CGGCCCAGAAGTGGTGAAAG 61.237 60.000 0.00 0.00 43.23 2.62
1960 2123 1.228124 CGGCCCAGAAGTGGTGAAA 60.228 57.895 0.00 0.00 43.23 2.69
1961 2124 2.429930 CGGCCCAGAAGTGGTGAA 59.570 61.111 0.00 0.00 43.23 3.18
1962 2125 3.636231 CCGGCCCAGAAGTGGTGA 61.636 66.667 0.00 0.00 43.23 4.02
1965 2128 4.431131 ATGCCGGCCCAGAAGTGG 62.431 66.667 26.77 0.00 44.56 4.00
1966 2129 2.825836 GATGCCGGCCCAGAAGTG 60.826 66.667 26.77 0.00 0.00 3.16
1967 2130 2.543067 GAAGATGCCGGCCCAGAAGT 62.543 60.000 26.77 1.81 0.00 3.01
1968 2131 1.821332 GAAGATGCCGGCCCAGAAG 60.821 63.158 26.77 0.00 0.00 2.85
1969 2132 2.272146 GAAGATGCCGGCCCAGAA 59.728 61.111 26.77 4.49 0.00 3.02
1970 2133 3.797353 GGAAGATGCCGGCCCAGA 61.797 66.667 26.77 4.98 0.00 3.86
1989 2152 4.735132 TGCAGCTACACCGGCGAC 62.735 66.667 9.30 0.00 34.52 5.19
1990 2153 4.435436 CTGCAGCTACACCGGCGA 62.435 66.667 9.30 0.00 34.52 5.54
2002 2165 4.731612 AGTCGCCGACAGCTGCAG 62.732 66.667 20.65 10.11 40.39 4.41
2005 2168 4.363990 ACCAGTCGCCGACAGCTG 62.364 66.667 20.65 13.48 40.39 4.24
2006 2169 4.363990 CACCAGTCGCCGACAGCT 62.364 66.667 20.65 0.00 40.39 4.24
2008 2171 3.633094 CTCCACCAGTCGCCGACAG 62.633 68.421 20.65 11.67 34.60 3.51
2009 2172 3.680786 CTCCACCAGTCGCCGACA 61.681 66.667 20.65 0.00 34.60 4.35
2010 2173 4.436998 CCTCCACCAGTCGCCGAC 62.437 72.222 9.71 9.71 0.00 4.79
2011 2174 3.957435 ATCCTCCACCAGTCGCCGA 62.957 63.158 0.00 0.00 0.00 5.54
2012 2175 3.432051 GATCCTCCACCAGTCGCCG 62.432 68.421 0.00 0.00 0.00 6.46
2013 2176 1.690219 ATGATCCTCCACCAGTCGCC 61.690 60.000 0.00 0.00 0.00 5.54
2014 2177 0.249657 GATGATCCTCCACCAGTCGC 60.250 60.000 0.00 0.00 0.00 5.19
2015 2178 0.390860 GGATGATCCTCCACCAGTCG 59.609 60.000 11.82 0.00 35.24 4.18
2016 2179 0.390860 CGGATGATCCTCCACCAGTC 59.609 60.000 16.25 0.00 34.78 3.51
2017 2180 0.032117 TCGGATGATCCTCCACCAGT 60.032 55.000 16.25 0.00 34.78 4.00
2018 2181 0.390860 GTCGGATGATCCTCCACCAG 59.609 60.000 16.25 1.31 34.78 4.00
2019 2182 0.032117 AGTCGGATGATCCTCCACCA 60.032 55.000 16.25 0.00 34.78 4.17
2020 2183 0.676736 GAGTCGGATGATCCTCCACC 59.323 60.000 16.25 6.38 34.78 4.61
2021 2184 0.312416 CGAGTCGGATGATCCTCCAC 59.688 60.000 16.25 12.63 34.78 4.02
2022 2185 0.106669 ACGAGTCGGATGATCCTCCA 60.107 55.000 18.30 2.20 34.78 3.86
2023 2186 0.594110 GACGAGTCGGATGATCCTCC 59.406 60.000 18.30 6.95 33.30 4.30
2035 2198 2.202453 GGAGCCGTTCGACGAGTC 60.202 66.667 8.63 0.00 46.05 3.36
2036 2199 2.672307 AGGAGCCGTTCGACGAGT 60.672 61.111 8.63 0.00 46.05 4.18
2037 2200 1.642037 TACAGGAGCCGTTCGACGAG 61.642 60.000 8.63 0.00 46.05 4.18
2038 2201 1.642037 CTACAGGAGCCGTTCGACGA 61.642 60.000 8.63 0.00 46.05 4.20
2039 2202 1.226323 CTACAGGAGCCGTTCGACG 60.226 63.158 0.00 0.00 42.11 5.12
2040 2203 1.516603 GCTACAGGAGCCGTTCGAC 60.517 63.158 0.00 0.00 46.41 4.20
2041 2204 2.882876 GCTACAGGAGCCGTTCGA 59.117 61.111 0.00 0.00 46.41 3.71
2059 2222 3.257561 CTTCATCAGCCGCCGACG 61.258 66.667 0.00 0.00 39.67 5.12
2060 2223 2.650813 ATCCTTCATCAGCCGCCGAC 62.651 60.000 0.00 0.00 0.00 4.79
2061 2224 2.369257 GATCCTTCATCAGCCGCCGA 62.369 60.000 0.00 0.00 0.00 5.54
2062 2225 1.958205 GATCCTTCATCAGCCGCCG 60.958 63.158 0.00 0.00 0.00 6.46
2063 2226 0.250640 ATGATCCTTCATCAGCCGCC 60.251 55.000 0.00 0.00 45.11 6.13
2064 2227 3.319135 ATGATCCTTCATCAGCCGC 57.681 52.632 0.00 0.00 45.11 6.53
2071 2234 3.612717 CGACGATTCGGATGATCCTTCAT 60.613 47.826 10.18 0.00 41.89 2.57
2072 2235 2.287608 CGACGATTCGGATGATCCTTCA 60.288 50.000 10.18 0.00 41.89 3.02
2073 2236 2.320367 CGACGATTCGGATGATCCTTC 58.680 52.381 10.18 3.19 41.89 3.46
2074 2237 2.423926 CGACGATTCGGATGATCCTT 57.576 50.000 10.18 0.00 41.89 3.36
2084 2247 1.140407 GCTCCTTGTCCGACGATTCG 61.140 60.000 4.14 4.14 45.44 3.34
2085 2248 0.806492 GGCTCCTTGTCCGACGATTC 60.806 60.000 0.00 0.00 0.00 2.52
2086 2249 1.218316 GGCTCCTTGTCCGACGATT 59.782 57.895 0.00 0.00 0.00 3.34
2087 2250 2.893398 GGCTCCTTGTCCGACGAT 59.107 61.111 0.00 0.00 0.00 3.73
2094 2257 3.665675 ATGGCGACGGCTCCTTGTC 62.666 63.158 22.70 0.00 39.81 3.18
2095 2258 3.665675 GATGGCGACGGCTCCTTGT 62.666 63.158 22.70 1.68 39.81 3.16
2096 2259 2.892425 GATGGCGACGGCTCCTTG 60.892 66.667 22.70 0.00 39.81 3.61
2097 2260 4.514577 CGATGGCGACGGCTCCTT 62.515 66.667 22.70 0.00 40.82 3.36
2099 2262 4.814294 AACGATGGCGACGGCTCC 62.814 66.667 22.70 12.50 41.64 4.70
2100 2263 3.554692 CAACGATGGCGACGGCTC 61.555 66.667 22.70 15.25 41.64 4.70
2110 2273 2.103373 TCTCCTCCTCTTCCAACGATG 58.897 52.381 0.00 0.00 0.00 3.84
2111 2274 2.104170 GTCTCCTCCTCTTCCAACGAT 58.896 52.381 0.00 0.00 0.00 3.73
2112 2275 1.546961 GTCTCCTCCTCTTCCAACGA 58.453 55.000 0.00 0.00 0.00 3.85
2113 2276 0.171455 CGTCTCCTCCTCTTCCAACG 59.829 60.000 0.00 0.00 0.00 4.10
2114 2277 1.546961 TCGTCTCCTCCTCTTCCAAC 58.453 55.000 0.00 0.00 0.00 3.77
2115 2278 2.103373 CATCGTCTCCTCCTCTTCCAA 58.897 52.381 0.00 0.00 0.00 3.53
2116 2279 1.285078 TCATCGTCTCCTCCTCTTCCA 59.715 52.381 0.00 0.00 0.00 3.53
2117 2280 2.060050 TCATCGTCTCCTCCTCTTCC 57.940 55.000 0.00 0.00 0.00 3.46
2118 2281 3.218453 TCATCATCGTCTCCTCCTCTTC 58.782 50.000 0.00 0.00 0.00 2.87
2119 2282 3.221771 CTCATCATCGTCTCCTCCTCTT 58.778 50.000 0.00 0.00 0.00 2.85
2120 2283 2.488891 CCTCATCATCGTCTCCTCCTCT 60.489 54.545 0.00 0.00 0.00 3.69
2121 2284 1.885887 CCTCATCATCGTCTCCTCCTC 59.114 57.143 0.00 0.00 0.00 3.71
2122 2285 1.993956 CCTCATCATCGTCTCCTCCT 58.006 55.000 0.00 0.00 0.00 3.69
2123 2286 0.316841 GCCTCATCATCGTCTCCTCC 59.683 60.000 0.00 0.00 0.00 4.30
2124 2287 0.316841 GGCCTCATCATCGTCTCCTC 59.683 60.000 0.00 0.00 0.00 3.71
2125 2288 0.105760 AGGCCTCATCATCGTCTCCT 60.106 55.000 0.00 0.00 0.00 3.69
2126 2289 0.755686 AAGGCCTCATCATCGTCTCC 59.244 55.000 5.23 0.00 0.00 3.71
2127 2290 2.159043 TCAAAGGCCTCATCATCGTCTC 60.159 50.000 5.23 0.00 0.00 3.36
2128 2291 1.833630 TCAAAGGCCTCATCATCGTCT 59.166 47.619 5.23 0.00 0.00 4.18
2129 2292 2.159043 TCTCAAAGGCCTCATCATCGTC 60.159 50.000 5.23 0.00 0.00 4.20
2130 2293 1.833630 TCTCAAAGGCCTCATCATCGT 59.166 47.619 5.23 0.00 0.00 3.73
2131 2294 2.208431 GTCTCAAAGGCCTCATCATCG 58.792 52.381 5.23 0.00 0.00 3.84
2132 2295 2.208431 CGTCTCAAAGGCCTCATCATC 58.792 52.381 5.23 0.00 0.00 2.92
2133 2296 1.745141 GCGTCTCAAAGGCCTCATCAT 60.745 52.381 5.23 0.00 32.52 2.45
2134 2297 0.391661 GCGTCTCAAAGGCCTCATCA 60.392 55.000 5.23 0.00 32.52 3.07
2135 2298 0.107945 AGCGTCTCAAAGGCCTCATC 60.108 55.000 5.23 0.00 39.64 2.92
2136 2299 0.392193 CAGCGTCTCAAAGGCCTCAT 60.392 55.000 5.23 0.00 39.64 2.90
2137 2300 1.004560 CAGCGTCTCAAAGGCCTCA 60.005 57.895 5.23 0.00 39.64 3.86
2138 2301 1.743252 CCAGCGTCTCAAAGGCCTC 60.743 63.158 5.23 0.00 39.64 4.70
2139 2302 1.557269 ATCCAGCGTCTCAAAGGCCT 61.557 55.000 0.00 0.00 39.64 5.19
2140 2303 1.078143 ATCCAGCGTCTCAAAGGCC 60.078 57.895 0.00 0.00 39.64 5.19
2141 2304 1.372087 CCATCCAGCGTCTCAAAGGC 61.372 60.000 0.00 0.00 39.09 4.35
2142 2305 1.372087 GCCATCCAGCGTCTCAAAGG 61.372 60.000 0.00 0.00 0.00 3.11
2143 2306 1.372087 GGCCATCCAGCGTCTCAAAG 61.372 60.000 0.00 0.00 0.00 2.77
2144 2307 1.377202 GGCCATCCAGCGTCTCAAA 60.377 57.895 0.00 0.00 0.00 2.69
2145 2308 2.268920 GGCCATCCAGCGTCTCAA 59.731 61.111 0.00 0.00 0.00 3.02
2146 2309 3.785859 GGGCCATCCAGCGTCTCA 61.786 66.667 4.39 0.00 35.00 3.27
2147 2310 4.899239 CGGGCCATCCAGCGTCTC 62.899 72.222 4.39 0.00 34.36 3.36
2149 2312 4.241555 ATCGGGCCATCCAGCGTC 62.242 66.667 4.39 0.00 34.36 5.19
2150 2313 4.241555 GATCGGGCCATCCAGCGT 62.242 66.667 4.39 0.00 34.36 5.07
2151 2314 4.996434 GGATCGGGCCATCCAGCG 62.996 72.222 22.48 3.94 42.02 5.18
2152 2315 3.564218 AGGATCGGGCCATCCAGC 61.564 66.667 26.50 9.07 44.57 4.85
2153 2316 2.429058 CAGGATCGGGCCATCCAG 59.571 66.667 26.50 19.19 44.57 3.86
2154 2317 3.877450 GCAGGATCGGGCCATCCA 61.877 66.667 26.50 1.52 44.57 3.41
2155 2318 4.996434 CGCAGGATCGGGCCATCC 62.996 72.222 20.82 20.82 42.68 3.51
2179 2342 4.863925 GAGAGCTCTGTCCGCCGC 62.864 72.222 23.91 0.00 0.00 6.53
2180 2343 4.200283 GGAGAGCTCTGTCCGCCG 62.200 72.222 23.91 0.00 33.14 6.46
2198 2361 4.083862 AAGGAAGAGGGACGCGGC 62.084 66.667 12.47 7.53 0.00 6.53
2199 2362 2.125512 CAAGGAAGAGGGACGCGG 60.126 66.667 12.47 0.00 0.00 6.46
2200 2363 1.446272 GTCAAGGAAGAGGGACGCG 60.446 63.158 3.53 3.53 0.00 6.01
2201 2364 1.079057 GGTCAAGGAAGAGGGACGC 60.079 63.158 0.00 0.00 0.00 5.19
2202 2365 1.215647 CGGTCAAGGAAGAGGGACG 59.784 63.158 0.00 0.00 0.00 4.79
2203 2366 1.079057 GCGGTCAAGGAAGAGGGAC 60.079 63.158 0.00 0.00 0.00 4.46
2204 2367 1.229209 AGCGGTCAAGGAAGAGGGA 60.229 57.895 0.00 0.00 0.00 4.20
2205 2368 1.078848 CAGCGGTCAAGGAAGAGGG 60.079 63.158 0.00 0.00 0.00 4.30
2206 2369 1.743252 GCAGCGGTCAAGGAAGAGG 60.743 63.158 0.00 0.00 0.00 3.69
2207 2370 1.743252 GGCAGCGGTCAAGGAAGAG 60.743 63.158 0.00 0.00 0.00 2.85
2208 2371 2.172483 GAGGCAGCGGTCAAGGAAGA 62.172 60.000 0.00 0.00 0.00 2.87
2209 2372 1.743252 GAGGCAGCGGTCAAGGAAG 60.743 63.158 0.00 0.00 0.00 3.46
2210 2373 2.347490 GAGGCAGCGGTCAAGGAA 59.653 61.111 0.00 0.00 0.00 3.36
2211 2374 3.706373 GGAGGCAGCGGTCAAGGA 61.706 66.667 0.00 0.00 0.00 3.36
2212 2375 4.785453 GGGAGGCAGCGGTCAAGG 62.785 72.222 0.00 0.00 0.00 3.61
2253 2416 4.954970 ATGCTTATGCCCGCCCCG 62.955 66.667 0.00 0.00 38.71 5.73
2254 2417 3.297620 CATGCTTATGCCCGCCCC 61.298 66.667 0.00 0.00 38.71 5.80
2255 2418 2.127232 AACATGCTTATGCCCGCCC 61.127 57.895 0.00 0.00 38.71 6.13
2256 2419 1.066257 CAACATGCTTATGCCCGCC 59.934 57.895 0.00 0.00 38.71 6.13
2257 2420 1.066257 CCAACATGCTTATGCCCGC 59.934 57.895 0.00 0.00 38.71 6.13
2258 2421 1.735360 CCCAACATGCTTATGCCCG 59.265 57.895 0.00 0.00 38.71 6.13
2259 2422 0.396974 TCCCCAACATGCTTATGCCC 60.397 55.000 0.00 0.00 38.71 5.36
2260 2423 1.136891 GTTCCCCAACATGCTTATGCC 59.863 52.381 0.00 0.00 33.59 4.40
2261 2424 1.202290 CGTTCCCCAACATGCTTATGC 60.202 52.381 0.00 0.00 34.47 3.14
2262 2425 2.091541 ACGTTCCCCAACATGCTTATG 58.908 47.619 0.00 0.00 32.14 1.90
2263 2426 2.507407 ACGTTCCCCAACATGCTTAT 57.493 45.000 0.00 0.00 32.14 1.73
2264 2427 2.937873 GCTACGTTCCCCAACATGCTTA 60.938 50.000 0.00 0.00 32.14 3.09
2265 2428 1.821216 CTACGTTCCCCAACATGCTT 58.179 50.000 0.00 0.00 32.14 3.91
2266 2429 0.676782 GCTACGTTCCCCAACATGCT 60.677 55.000 0.00 0.00 32.14 3.79
2267 2430 0.958382 TGCTACGTTCCCCAACATGC 60.958 55.000 0.00 0.00 32.14 4.06
2268 2431 1.086696 CTGCTACGTTCCCCAACATG 58.913 55.000 0.00 0.00 32.14 3.21
2269 2432 0.981183 TCTGCTACGTTCCCCAACAT 59.019 50.000 0.00 0.00 32.14 2.71
2270 2433 0.759959 TTCTGCTACGTTCCCCAACA 59.240 50.000 0.00 0.00 32.14 3.33
2271 2434 1.886886 TTTCTGCTACGTTCCCCAAC 58.113 50.000 0.00 0.00 0.00 3.77
2272 2435 2.871096 ATTTCTGCTACGTTCCCCAA 57.129 45.000 0.00 0.00 0.00 4.12
2273 2436 2.039216 TGAATTTCTGCTACGTTCCCCA 59.961 45.455 0.00 0.00 0.00 4.96
2274 2437 2.706890 TGAATTTCTGCTACGTTCCCC 58.293 47.619 0.00 0.00 0.00 4.81
2275 2438 4.759516 TTTGAATTTCTGCTACGTTCCC 57.240 40.909 0.00 0.00 0.00 3.97
2276 2439 7.637709 AAATTTTGAATTTCTGCTACGTTCC 57.362 32.000 0.00 0.00 0.00 3.62
2277 2440 8.968242 AGAAAATTTTGAATTTCTGCTACGTTC 58.032 29.630 8.47 0.00 42.62 3.95
2278 2441 8.871686 AGAAAATTTTGAATTTCTGCTACGTT 57.128 26.923 8.47 0.00 42.62 3.99
2279 2442 9.394477 GTAGAAAATTTTGAATTTCTGCTACGT 57.606 29.630 8.47 0.00 43.67 3.57
2280 2443 8.567221 CGTAGAAAATTTTGAATTTCTGCTACG 58.433 33.333 22.91 22.91 43.67 3.51
2281 2444 8.365938 GCGTAGAAAATTTTGAATTTCTGCTAC 58.634 33.333 8.47 8.90 43.67 3.58
2282 2445 8.079203 TGCGTAGAAAATTTTGAATTTCTGCTA 58.921 29.630 8.47 0.00 43.67 3.49
2283 2446 6.922957 TGCGTAGAAAATTTTGAATTTCTGCT 59.077 30.769 8.47 0.00 43.67 4.24
2284 2447 7.104326 TGCGTAGAAAATTTTGAATTTCTGC 57.896 32.000 8.47 8.21 43.67 4.26
2285 2448 8.914654 TGATGCGTAGAAAATTTTGAATTTCTG 58.085 29.630 8.47 0.00 43.67 3.02
2286 2449 8.915654 GTGATGCGTAGAAAATTTTGAATTTCT 58.084 29.630 8.47 0.48 45.29 2.52
2287 2450 8.162245 GGTGATGCGTAGAAAATTTTGAATTTC 58.838 33.333 8.47 0.00 36.11 2.17
2288 2451 7.655328 TGGTGATGCGTAGAAAATTTTGAATTT 59.345 29.630 8.47 0.00 0.00 1.82
2289 2452 7.151308 TGGTGATGCGTAGAAAATTTTGAATT 58.849 30.769 8.47 0.00 0.00 2.17
2290 2453 6.686630 TGGTGATGCGTAGAAAATTTTGAAT 58.313 32.000 8.47 0.00 0.00 2.57
2291 2454 6.078202 TGGTGATGCGTAGAAAATTTTGAA 57.922 33.333 8.47 0.00 0.00 2.69
2292 2455 5.697473 TGGTGATGCGTAGAAAATTTTGA 57.303 34.783 8.47 0.00 0.00 2.69
2293 2456 6.148948 TCTTGGTGATGCGTAGAAAATTTTG 58.851 36.000 8.47 0.00 0.00 2.44
2294 2457 6.325919 TCTTGGTGATGCGTAGAAAATTTT 57.674 33.333 2.28 2.28 0.00 1.82
2295 2458 5.957842 TCTTGGTGATGCGTAGAAAATTT 57.042 34.783 0.00 0.00 0.00 1.82
2296 2459 5.647658 TGATCTTGGTGATGCGTAGAAAATT 59.352 36.000 0.00 0.00 35.14 1.82
2297 2460 5.185454 TGATCTTGGTGATGCGTAGAAAAT 58.815 37.500 0.00 0.00 35.14 1.82
2298 2461 4.574892 TGATCTTGGTGATGCGTAGAAAA 58.425 39.130 0.00 0.00 35.14 2.29
2299 2462 4.200838 TGATCTTGGTGATGCGTAGAAA 57.799 40.909 0.00 0.00 35.14 2.52
2300 2463 3.885724 TGATCTTGGTGATGCGTAGAA 57.114 42.857 0.00 0.00 35.14 2.10
2301 2464 3.885724 TTGATCTTGGTGATGCGTAGA 57.114 42.857 0.00 0.00 35.14 2.59
2302 2465 4.375272 AGATTGATCTTGGTGATGCGTAG 58.625 43.478 0.00 0.00 35.14 3.51
2303 2466 4.406648 AGATTGATCTTGGTGATGCGTA 57.593 40.909 0.00 0.00 35.14 4.42
2304 2467 3.272574 AGATTGATCTTGGTGATGCGT 57.727 42.857 0.00 0.00 35.14 5.24
2305 2468 4.153655 CCATAGATTGATCTTGGTGATGCG 59.846 45.833 0.00 0.00 38.32 4.73
2306 2469 5.311265 TCCATAGATTGATCTTGGTGATGC 58.689 41.667 15.48 0.00 38.32 3.91
2307 2470 6.531923 ACTCCATAGATTGATCTTGGTGATG 58.468 40.000 19.38 10.22 38.32 3.07
2308 2471 6.760440 ACTCCATAGATTGATCTTGGTGAT 57.240 37.500 19.38 0.00 38.32 3.06
2309 2472 6.566079 AACTCCATAGATTGATCTTGGTGA 57.434 37.500 19.38 6.63 38.32 4.02
2310 2473 7.989741 AGTAAACTCCATAGATTGATCTTGGTG 59.010 37.037 15.48 15.28 38.32 4.17
2311 2474 8.095452 AGTAAACTCCATAGATTGATCTTGGT 57.905 34.615 15.48 5.78 38.32 3.67
2312 2475 9.703892 CTAGTAAACTCCATAGATTGATCTTGG 57.296 37.037 0.00 7.19 38.32 3.61
2313 2476 9.202273 GCTAGTAAACTCCATAGATTGATCTTG 57.798 37.037 0.00 0.00 38.32 3.02
2314 2477 8.928448 TGCTAGTAAACTCCATAGATTGATCTT 58.072 33.333 0.00 0.00 38.32 2.40
2315 2478 8.484214 TGCTAGTAAACTCCATAGATTGATCT 57.516 34.615 0.00 0.00 40.86 2.75
2316 2479 8.983724 GTTGCTAGTAAACTCCATAGATTGATC 58.016 37.037 0.00 0.00 0.00 2.92
2317 2480 7.653713 CGTTGCTAGTAAACTCCATAGATTGAT 59.346 37.037 0.00 0.00 0.00 2.57
2318 2481 6.978659 CGTTGCTAGTAAACTCCATAGATTGA 59.021 38.462 0.00 0.00 0.00 2.57
2319 2482 6.978659 TCGTTGCTAGTAAACTCCATAGATTG 59.021 38.462 0.00 0.00 0.00 2.67
2320 2483 7.068348 TCTCGTTGCTAGTAAACTCCATAGATT 59.932 37.037 0.00 0.00 0.00 2.40
2321 2484 6.546403 TCTCGTTGCTAGTAAACTCCATAGAT 59.454 38.462 0.00 0.00 0.00 1.98
2322 2485 5.884232 TCTCGTTGCTAGTAAACTCCATAGA 59.116 40.000 0.00 0.00 0.00 1.98
2323 2486 6.132791 TCTCGTTGCTAGTAAACTCCATAG 57.867 41.667 0.00 0.00 0.00 2.23
2324 2487 5.067413 CCTCTCGTTGCTAGTAAACTCCATA 59.933 44.000 0.00 0.00 0.00 2.74
2325 2488 4.142138 CCTCTCGTTGCTAGTAAACTCCAT 60.142 45.833 0.00 0.00 0.00 3.41
2326 2489 3.192844 CCTCTCGTTGCTAGTAAACTCCA 59.807 47.826 0.00 0.00 0.00 3.86
2327 2490 3.429135 CCCTCTCGTTGCTAGTAAACTCC 60.429 52.174 0.00 0.00 0.00 3.85
2328 2491 3.442977 TCCCTCTCGTTGCTAGTAAACTC 59.557 47.826 0.00 0.00 0.00 3.01
2329 2492 3.428532 TCCCTCTCGTTGCTAGTAAACT 58.571 45.455 0.00 0.00 0.00 2.66
2330 2493 3.863142 TCCCTCTCGTTGCTAGTAAAC 57.137 47.619 0.00 0.00 0.00 2.01
2331 2494 3.194968 CCTTCCCTCTCGTTGCTAGTAAA 59.805 47.826 0.00 0.00 0.00 2.01
2332 2495 2.758979 CCTTCCCTCTCGTTGCTAGTAA 59.241 50.000 0.00 0.00 0.00 2.24
2333 2496 2.025605 TCCTTCCCTCTCGTTGCTAGTA 60.026 50.000 0.00 0.00 0.00 1.82
2334 2497 1.187087 CCTTCCCTCTCGTTGCTAGT 58.813 55.000 0.00 0.00 0.00 2.57
2335 2498 1.407258 CTCCTTCCCTCTCGTTGCTAG 59.593 57.143 0.00 0.00 0.00 3.42
2336 2499 1.272536 ACTCCTTCCCTCTCGTTGCTA 60.273 52.381 0.00 0.00 0.00 3.49
2337 2500 0.543174 ACTCCTTCCCTCTCGTTGCT 60.543 55.000 0.00 0.00 0.00 3.91
2338 2501 0.390472 CACTCCTTCCCTCTCGTTGC 60.390 60.000 0.00 0.00 0.00 4.17
2339 2502 0.390472 GCACTCCTTCCCTCTCGTTG 60.390 60.000 0.00 0.00 0.00 4.10
2340 2503 0.832135 TGCACTCCTTCCCTCTCGTT 60.832 55.000 0.00 0.00 0.00 3.85
2341 2504 0.616111 ATGCACTCCTTCCCTCTCGT 60.616 55.000 0.00 0.00 0.00 4.18
2342 2505 0.103937 GATGCACTCCTTCCCTCTCG 59.896 60.000 0.00 0.00 0.00 4.04
2343 2506 1.494960 AGATGCACTCCTTCCCTCTC 58.505 55.000 0.00 0.00 0.00 3.20
2344 2507 2.292521 TGTAGATGCACTCCTTCCCTCT 60.293 50.000 0.00 0.00 0.00 3.69
2345 2508 2.111384 TGTAGATGCACTCCTTCCCTC 58.889 52.381 0.00 0.00 0.00 4.30
2346 2509 2.254152 TGTAGATGCACTCCTTCCCT 57.746 50.000 0.00 0.00 0.00 4.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.