Multiple sequence alignment - TraesCS5D01G067700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G067700 chr5D 100.000 3946 0 0 1 3946 63151275 63155220 0.000000e+00 7287.0
1 TraesCS5D01G067700 chr5D 90.020 992 69 17 931 1904 63267613 63268592 0.000000e+00 1256.0
2 TraesCS5D01G067700 chr5D 88.923 659 73 0 2299 2957 63268737 63269395 0.000000e+00 813.0
3 TraesCS5D01G067700 chr5D 71.941 474 102 16 298 746 472461985 472462452 4.170000e-20 110.0
4 TraesCS5D01G067700 chr5D 91.525 59 3 1 3226 3284 63269672 63269728 3.270000e-11 80.5
5 TraesCS5D01G067700 chr5D 97.297 37 1 0 3873 3909 156486171 156486135 3.290000e-06 63.9
6 TraesCS5D01G067700 chr5B 94.688 1299 67 2 638 1934 67493582 67492284 0.000000e+00 2015.0
7 TraesCS5D01G067700 chr5B 93.899 1262 66 9 1950 3210 67492121 67490870 0.000000e+00 1893.0
8 TraesCS5D01G067700 chr5B 91.066 929 65 11 986 1904 67333834 67332914 0.000000e+00 1240.0
9 TraesCS5D01G067700 chr5B 89.920 625 63 0 2313 2937 67332753 67332129 0.000000e+00 806.0
10 TraesCS5D01G067700 chr5B 87.375 602 65 5 1 597 67512166 67511571 0.000000e+00 680.0
11 TraesCS5D01G067700 chr5B 90.682 440 28 13 3300 3733 477557615 477558047 1.230000e-159 573.0
12 TraesCS5D01G067700 chr5B 94.631 149 7 1 3713 3860 67480933 67480785 3.070000e-56 230.0
13 TraesCS5D01G067700 chr5B 97.531 81 2 0 3226 3306 67481006 67480926 5.320000e-29 139.0
14 TraesCS5D01G067700 chr5A 94.359 1170 65 1 2051 3220 52448157 52449325 0.000000e+00 1794.0
15 TraesCS5D01G067700 chr5A 93.399 1212 44 12 797 1981 52446652 52447854 0.000000e+00 1762.0
16 TraesCS5D01G067700 chr5A 89.300 1000 71 24 931 1909 52711184 52712168 0.000000e+00 1221.0
17 TraesCS5D01G067700 chr5A 89.193 657 71 0 2301 2957 52712228 52712884 0.000000e+00 821.0
18 TraesCS5D01G067700 chr5A 90.845 426 33 5 3300 3720 428152445 428152021 2.060000e-157 566.0
19 TraesCS5D01G067700 chr5A 81.146 541 96 4 1 537 521763716 521764254 2.820000e-116 429.0
20 TraesCS5D01G067700 chr5A 93.310 284 19 0 2937 3220 52449834 52450117 1.700000e-113 420.0
21 TraesCS5D01G067700 chr5A 91.930 285 22 1 2937 3220 52481949 52482233 7.950000e-107 398.0
22 TraesCS5D01G067700 chr5A 89.787 235 23 1 3713 3946 52482353 52482587 2.300000e-77 300.0
23 TraesCS5D01G067700 chr5A 91.346 208 17 1 3713 3920 52449446 52449652 2.320000e-72 283.0
24 TraesCS5D01G067700 chr5A 89.904 208 21 0 3713 3920 52481560 52481767 6.500000e-68 268.0
25 TraesCS5D01G067700 chr5A 91.525 59 5 0 3226 3284 52713151 52713209 9.090000e-12 82.4
26 TraesCS5D01G067700 chr3B 84.759 748 99 9 1 741 813009810 813010549 0.000000e+00 736.0
27 TraesCS5D01G067700 chr3B 81.260 635 100 10 89 719 829328146 829327527 2.740000e-136 496.0
28 TraesCS5D01G067700 chr1B 82.490 731 114 9 19 741 679683389 679682665 2.590000e-176 628.0
29 TraesCS5D01G067700 chr1A 83.430 688 97 12 69 746 586497564 586496884 1.200000e-174 623.0
30 TraesCS5D01G067700 chr2D 93.382 408 23 4 3308 3711 640367721 640367314 5.640000e-168 601.0
31 TraesCS5D01G067700 chrUn 81.855 744 105 23 1 734 44576543 44577266 2.030000e-167 599.0
32 TraesCS5D01G067700 chrUn 96.970 33 1 0 2073 2105 71421126 71421158 5.510000e-04 56.5
33 TraesCS5D01G067700 chrUn 96.970 33 1 0 2073 2105 71478692 71478724 5.510000e-04 56.5
34 TraesCS5D01G067700 chrUn 96.970 33 1 0 2073 2105 330979506 330979474 5.510000e-04 56.5
35 TraesCS5D01G067700 chr4A 91.847 417 28 5 3309 3722 139717652 139718065 9.510000e-161 577.0
36 TraesCS5D01G067700 chr4A 81.854 507 71 15 209 702 619944580 619944082 1.320000e-109 407.0
37 TraesCS5D01G067700 chr6D 92.176 409 26 5 3307 3711 5731929 5732335 1.230000e-159 573.0
38 TraesCS5D01G067700 chr6D 78.956 632 109 15 1092 1702 44496319 44496947 3.670000e-110 409.0
39 TraesCS5D01G067700 chr6D 72.264 667 151 27 91 741 353102006 353102654 4.050000e-40 176.0
40 TraesCS5D01G067700 chr6D 100.000 31 0 0 2075 2105 124941335 124941365 1.530000e-04 58.4
41 TraesCS5D01G067700 chr7D 90.909 429 32 7 3296 3718 589511213 589510786 1.590000e-158 569.0
42 TraesCS5D01G067700 chr7D 90.888 428 32 6 3300 3721 133690105 133690531 5.720000e-158 568.0
43 TraesCS5D01G067700 chr7D 91.892 407 28 5 3309 3711 610486824 610487229 7.400000e-157 564.0
44 TraesCS5D01G067700 chr7D 100.000 34 0 0 3870 3903 536119556 536119523 3.290000e-06 63.9
45 TraesCS5D01G067700 chr7B 92.079 404 29 2 3311 3711 652613008 652613411 2.060000e-157 566.0
46 TraesCS5D01G067700 chr7B 75.406 431 91 15 300 728 577670493 577670076 1.120000e-45 195.0
47 TraesCS5D01G067700 chr6B 83.028 601 96 4 1 596 35769783 35770382 1.250000e-149 540.0
48 TraesCS5D01G067700 chr6B 79.173 629 115 13 1088 1702 113588243 113588869 4.710000e-114 422.0
49 TraesCS5D01G067700 chr6B 76.419 458 82 19 313 751 563125046 563124596 1.430000e-54 224.0
50 TraesCS5D01G067700 chr6B 81.633 98 17 1 638 735 563289661 563289757 3.270000e-11 80.5
51 TraesCS5D01G067700 chr6B 100.000 31 0 0 2075 2105 222680138 222680168 1.530000e-04 58.4
52 TraesCS5D01G067700 chr6A 76.627 830 153 31 1092 1893 59320535 59321351 1.700000e-113 420.0
53 TraesCS5D01G067700 chr6A 80.319 188 30 7 349 533 558581669 558581852 6.880000e-28 135.0
54 TraesCS5D01G067700 chr3D 77.984 486 84 15 273 741 8196410 8196889 2.320000e-72 283.0
55 TraesCS5D01G067700 chr3D 76.744 516 105 9 1128 1630 319866886 319867399 1.400000e-69 274.0
56 TraesCS5D01G067700 chr2B 95.833 48 2 0 689 736 798557787 798557834 1.180000e-10 78.7
57 TraesCS5D01G067700 chr2A 74.675 154 37 2 2073 2225 746745725 746745573 2.540000e-07 67.6
58 TraesCS5D01G067700 chr4B 90.196 51 2 3 2074 2123 69320012 69319964 3.290000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G067700 chr5D 63151275 63155220 3945 False 7287.000000 7287 100.000000 1 3946 1 chr5D.!!$F1 3945
1 TraesCS5D01G067700 chr5D 63267613 63269728 2115 False 716.500000 1256 90.156000 931 3284 3 chr5D.!!$F3 2353
2 TraesCS5D01G067700 chr5B 67490870 67493582 2712 True 1954.000000 2015 94.293500 638 3210 2 chr5B.!!$R4 2572
3 TraesCS5D01G067700 chr5B 67332129 67333834 1705 True 1023.000000 1240 90.493000 986 2937 2 chr5B.!!$R2 1951
4 TraesCS5D01G067700 chr5B 67511571 67512166 595 True 680.000000 680 87.375000 1 597 1 chr5B.!!$R1 596
5 TraesCS5D01G067700 chr5A 52446652 52450117 3465 False 1064.750000 1794 93.103500 797 3920 4 chr5A.!!$F2 3123
6 TraesCS5D01G067700 chr5A 52711184 52713209 2025 False 708.133333 1221 90.006000 931 3284 3 chr5A.!!$F4 2353
7 TraesCS5D01G067700 chr5A 521763716 521764254 538 False 429.000000 429 81.146000 1 537 1 chr5A.!!$F1 536
8 TraesCS5D01G067700 chr5A 52481560 52482587 1027 False 322.000000 398 90.540333 2937 3946 3 chr5A.!!$F3 1009
9 TraesCS5D01G067700 chr3B 813009810 813010549 739 False 736.000000 736 84.759000 1 741 1 chr3B.!!$F1 740
10 TraesCS5D01G067700 chr3B 829327527 829328146 619 True 496.000000 496 81.260000 89 719 1 chr3B.!!$R1 630
11 TraesCS5D01G067700 chr1B 679682665 679683389 724 True 628.000000 628 82.490000 19 741 1 chr1B.!!$R1 722
12 TraesCS5D01G067700 chr1A 586496884 586497564 680 True 623.000000 623 83.430000 69 746 1 chr1A.!!$R1 677
13 TraesCS5D01G067700 chrUn 44576543 44577266 723 False 599.000000 599 81.855000 1 734 1 chrUn.!!$F1 733
14 TraesCS5D01G067700 chr6D 44496319 44496947 628 False 409.000000 409 78.956000 1092 1702 1 chr6D.!!$F2 610
15 TraesCS5D01G067700 chr6B 35769783 35770382 599 False 540.000000 540 83.028000 1 596 1 chr6B.!!$F1 595
16 TraesCS5D01G067700 chr6B 113588243 113588869 626 False 422.000000 422 79.173000 1088 1702 1 chr6B.!!$F2 614
17 TraesCS5D01G067700 chr6A 59320535 59321351 816 False 420.000000 420 76.627000 1092 1893 1 chr6A.!!$F1 801
18 TraesCS5D01G067700 chr3D 319866886 319867399 513 False 274.000000 274 76.744000 1128 1630 1 chr3D.!!$F2 502

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
883 919 0.030504 CCAATTCACGTGCAGCAACA 59.969 50.000 11.67 0.0 0.00 3.33 F
1082 1161 1.227263 GTCGCTACGCATCACCCAT 60.227 57.895 0.00 0.0 0.00 4.00 F
2495 3069 0.326522 TGAGGCTGGGCTATCTCCAA 60.327 55.000 0.00 0.0 33.36 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2462 3036 0.741221 GCCTCACCTTGACGATGTCC 60.741 60.000 0.00 0.0 0.0 4.02 R
2839 3413 1.349026 CCATATCTTCGGGCCTCATGT 59.651 52.381 0.84 0.0 0.0 3.21 R
3312 4716 0.035056 CTCGGTCTCCAAAATGCCCT 60.035 55.000 0.00 0.0 0.0 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
172 176 7.252612 TGGGACATGTCTACTTCAAGATTTA 57.747 36.000 24.50 0.00 0.00 1.40
189 193 8.981659 TCAAGATTTACATGGTATTGAGAGAGA 58.018 33.333 0.00 0.00 0.00 3.10
402 413 3.355378 CAATGTCTGGCCTTCATTGGTA 58.645 45.455 25.63 0.00 42.34 3.25
406 417 1.985159 TCTGGCCTTCATTGGTAGTGT 59.015 47.619 3.32 0.00 0.00 3.55
407 418 2.086869 CTGGCCTTCATTGGTAGTGTG 58.913 52.381 3.32 0.00 0.00 3.82
472 484 3.269592 TCTCCAGGGTGAGAACCTAAA 57.730 47.619 0.00 0.00 38.41 1.85
519 531 4.375272 CTTGTGCTCTGTTCTCTTCTTGA 58.625 43.478 0.00 0.00 0.00 3.02
538 550 0.693049 AAGGCATCGTCTTTGGAGGT 59.307 50.000 0.00 0.00 0.00 3.85
547 559 2.287608 CGTCTTTGGAGGTCCTTTTTGC 60.288 50.000 0.00 0.00 36.82 3.68
660 695 0.890542 TGGCTGTGTGCATCCTCAAC 60.891 55.000 0.00 0.00 45.15 3.18
668 703 2.094700 TGTGCATCCTCAACGTCTAGTC 60.095 50.000 0.00 0.00 0.00 2.59
678 713 5.375417 TCAACGTCTAGTCGGACATTTTA 57.625 39.130 13.78 0.00 36.12 1.52
681 716 7.537715 TCAACGTCTAGTCGGACATTTTATTA 58.462 34.615 13.78 0.00 36.12 0.98
702 737 4.423625 AATGTAGAGGCTGGGTGTAATC 57.576 45.455 0.00 0.00 0.00 1.75
805 841 1.068610 GCGCTCTGCACCATTTGTTTA 60.069 47.619 0.00 0.00 45.45 2.01
883 919 0.030504 CCAATTCACGTGCAGCAACA 59.969 50.000 11.67 0.00 0.00 3.33
889 948 2.191802 TCACGTGCAGCAACATTTTTG 58.808 42.857 11.67 0.00 0.00 2.44
1026 1105 3.288308 CTTCACGGCGCTGGTCTCT 62.288 63.158 22.44 0.00 0.00 3.10
1065 1144 2.743718 CTCAAGCTGGTCACCGGT 59.256 61.111 0.00 0.00 31.34 5.28
1082 1161 1.227263 GTCGCTACGCATCACCCAT 60.227 57.895 0.00 0.00 0.00 4.00
1152 1231 2.433446 CTGCACCACCTCCTGCTT 59.567 61.111 0.00 0.00 34.29 3.91
1227 1306 4.598894 CCGCTCATGCTCCTCCGG 62.599 72.222 0.00 0.00 36.97 5.14
1437 1516 4.479993 CTCTTCAGCCAGCCCCGG 62.480 72.222 0.00 0.00 0.00 5.73
1761 1858 2.466982 CCGCATCGTGCAGAGCATT 61.467 57.895 9.95 0.00 45.36 3.56
1962 2228 6.349115 CGGTTCTGTACTAGTACATCAGTTGT 60.349 42.308 30.78 0.00 44.15 3.32
2006 2272 5.546621 TTAATACAGATGGGTGCCTCTAC 57.453 43.478 0.00 0.00 0.00 2.59
2019 2285 5.485708 GGGTGCCTCTACTATCTCCATTATT 59.514 44.000 0.00 0.00 0.00 1.40
2020 2286 6.351456 GGGTGCCTCTACTATCTCCATTATTC 60.351 46.154 0.00 0.00 0.00 1.75
2021 2287 6.351456 GGTGCCTCTACTATCTCCATTATTCC 60.351 46.154 0.00 0.00 0.00 3.01
2022 2288 6.211584 GTGCCTCTACTATCTCCATTATTCCA 59.788 42.308 0.00 0.00 0.00 3.53
2193 2744 8.246180 AGCACAATTTTCAATATAGTTGGTCAG 58.754 33.333 0.00 0.00 0.00 3.51
2202 2753 2.724977 TAGTTGGTCAGTCTCAAGCG 57.275 50.000 0.00 0.00 0.00 4.68
2251 2802 5.243060 ACTTTAATTCTTTTGGAACGGAGGG 59.757 40.000 0.00 0.00 36.70 4.30
2262 2813 3.333082 TGGAACGGAGGGGGTAATTTTTA 59.667 43.478 0.00 0.00 0.00 1.52
2322 2896 1.725641 TGATAAGCAACTGCAGGACG 58.274 50.000 19.93 6.80 45.16 4.79
2346 2920 1.471829 TTCTGCTGGGAGCGAGACAA 61.472 55.000 0.00 0.00 46.26 3.18
2459 3033 3.263425 AGGGAAAAGATAAGCTCACCGAA 59.737 43.478 0.00 0.00 0.00 4.30
2462 3036 4.568760 GGAAAAGATAAGCTCACCGAAGAG 59.431 45.833 0.00 0.36 38.68 2.85
2495 3069 0.326522 TGAGGCTGGGCTATCTCCAA 60.327 55.000 0.00 0.00 33.36 3.53
2717 3291 2.125106 GACTTCAAGGGCGCCGAT 60.125 61.111 22.54 8.99 0.00 4.18
3183 4587 3.118445 TGCCAAATGTCCACGATCTCATA 60.118 43.478 0.00 0.00 0.00 2.15
3215 4619 5.849357 TGCTGTCAAATGAAAAATGATGC 57.151 34.783 0.00 0.00 0.00 3.91
3220 4624 5.011840 TGTCAAATGAAAAATGATGCAGGGA 59.988 36.000 0.00 0.00 0.00 4.20
3221 4625 6.110707 GTCAAATGAAAAATGATGCAGGGAT 58.889 36.000 0.00 0.00 0.00 3.85
3222 4626 6.036735 GTCAAATGAAAAATGATGCAGGGATG 59.963 38.462 0.00 0.00 0.00 3.51
3223 4627 5.687166 AATGAAAAATGATGCAGGGATGT 57.313 34.783 0.00 0.00 0.00 3.06
3224 4628 4.459390 TGAAAAATGATGCAGGGATGTG 57.541 40.909 0.00 0.00 0.00 3.21
3225 4629 3.833650 TGAAAAATGATGCAGGGATGTGT 59.166 39.130 0.00 0.00 0.00 3.72
3226 4630 4.082081 TGAAAAATGATGCAGGGATGTGTC 60.082 41.667 0.00 0.00 0.00 3.67
3227 4631 2.812836 AATGATGCAGGGATGTGTCA 57.187 45.000 0.00 0.00 0.00 3.58
3228 4632 2.048444 ATGATGCAGGGATGTGTCAC 57.952 50.000 0.00 0.00 0.00 3.67
3229 4633 0.035152 TGATGCAGGGATGTGTCACC 60.035 55.000 0.00 0.00 0.00 4.02
3230 4634 0.035152 GATGCAGGGATGTGTCACCA 60.035 55.000 0.00 0.00 0.00 4.17
3231 4635 0.034767 ATGCAGGGATGTGTCACCAG 60.035 55.000 0.00 0.00 0.00 4.00
3232 4636 2.042831 GCAGGGATGTGTCACCAGC 61.043 63.158 0.00 0.00 0.00 4.85
3233 4637 1.681666 CAGGGATGTGTCACCAGCT 59.318 57.895 0.00 0.00 0.00 4.24
3234 4638 0.904649 CAGGGATGTGTCACCAGCTA 59.095 55.000 0.00 0.00 0.00 3.32
3235 4639 1.134580 CAGGGATGTGTCACCAGCTAG 60.135 57.143 0.00 0.00 0.00 3.42
3236 4640 1.195115 GGGATGTGTCACCAGCTAGA 58.805 55.000 0.00 0.00 0.00 2.43
3237 4641 1.555075 GGGATGTGTCACCAGCTAGAA 59.445 52.381 0.00 0.00 0.00 2.10
3238 4642 2.027192 GGGATGTGTCACCAGCTAGAAA 60.027 50.000 0.00 0.00 0.00 2.52
3239 4643 3.265791 GGATGTGTCACCAGCTAGAAAG 58.734 50.000 0.00 0.00 0.00 2.62
3250 4654 1.826385 GCTAGAAAGCTTCTTGGCCA 58.174 50.000 0.00 0.00 45.85 5.36
3251 4655 1.470494 GCTAGAAAGCTTCTTGGCCAC 59.530 52.381 3.88 0.00 45.85 5.01
3252 4656 2.783135 CTAGAAAGCTTCTTGGCCACA 58.217 47.619 3.88 0.00 41.14 4.17
3253 4657 1.322442 AGAAAGCTTCTTGGCCACAC 58.678 50.000 3.88 0.00 36.36 3.82
3254 4658 1.032014 GAAAGCTTCTTGGCCACACA 58.968 50.000 3.88 0.00 0.00 3.72
3255 4659 1.408702 GAAAGCTTCTTGGCCACACAA 59.591 47.619 3.88 0.00 0.00 3.33
3257 4661 0.106519 AGCTTCTTGGCCACACAAGT 60.107 50.000 3.88 0.00 46.11 3.16
3258 4662 0.746659 GCTTCTTGGCCACACAAGTT 59.253 50.000 3.88 0.00 46.11 2.66
3259 4663 1.136891 GCTTCTTGGCCACACAAGTTT 59.863 47.619 3.88 0.00 46.11 2.66
3260 4664 2.418609 GCTTCTTGGCCACACAAGTTTT 60.419 45.455 3.88 0.00 46.11 2.43
3261 4665 3.860641 CTTCTTGGCCACACAAGTTTTT 58.139 40.909 3.88 0.00 46.11 1.94
3262 4666 4.679372 GCTTCTTGGCCACACAAGTTTTTA 60.679 41.667 3.88 0.00 46.11 1.52
3263 4667 5.600696 CTTCTTGGCCACACAAGTTTTTAT 58.399 37.500 3.88 0.00 46.11 1.40
3264 4668 5.195001 TCTTGGCCACACAAGTTTTTATC 57.805 39.130 3.88 0.00 46.11 1.75
3265 4669 4.892934 TCTTGGCCACACAAGTTTTTATCT 59.107 37.500 3.88 0.00 46.11 1.98
3266 4670 4.846779 TGGCCACACAAGTTTTTATCTC 57.153 40.909 0.00 0.00 0.00 2.75
3267 4671 3.252215 TGGCCACACAAGTTTTTATCTCG 59.748 43.478 0.00 0.00 0.00 4.04
3268 4672 3.252458 GGCCACACAAGTTTTTATCTCGT 59.748 43.478 0.00 0.00 0.00 4.18
3269 4673 4.261447 GGCCACACAAGTTTTTATCTCGTT 60.261 41.667 0.00 0.00 0.00 3.85
3270 4674 4.675114 GCCACACAAGTTTTTATCTCGTTG 59.325 41.667 0.00 0.00 0.00 4.10
3271 4675 5.732247 GCCACACAAGTTTTTATCTCGTTGT 60.732 40.000 0.00 0.00 0.00 3.32
3272 4676 6.262601 CCACACAAGTTTTTATCTCGTTGTT 58.737 36.000 0.00 0.00 0.00 2.83
3273 4677 6.196353 CCACACAAGTTTTTATCTCGTTGTTG 59.804 38.462 0.00 0.00 0.00 3.33
3274 4678 6.964370 CACACAAGTTTTTATCTCGTTGTTGA 59.036 34.615 0.00 0.00 0.00 3.18
3275 4679 7.643764 CACACAAGTTTTTATCTCGTTGTTGAT 59.356 33.333 0.00 0.00 0.00 2.57
3276 4680 7.643764 ACACAAGTTTTTATCTCGTTGTTGATG 59.356 33.333 0.00 0.00 0.00 3.07
3277 4681 7.855409 CACAAGTTTTTATCTCGTTGTTGATGA 59.145 33.333 0.00 0.00 0.00 2.92
3278 4682 8.567948 ACAAGTTTTTATCTCGTTGTTGATGAT 58.432 29.630 0.00 0.00 0.00 2.45
3279 4683 9.398170 CAAGTTTTTATCTCGTTGTTGATGATT 57.602 29.630 0.00 0.00 0.00 2.57
3280 4684 9.965824 AAGTTTTTATCTCGTTGTTGATGATTT 57.034 25.926 0.00 0.00 0.00 2.17
3288 4692 8.227731 TCTCGTTGTTGATGATTTATATAGCG 57.772 34.615 0.00 0.00 0.00 4.26
3305 4709 9.933723 TTATATAGCGTAGATATGCGGTATCTA 57.066 33.333 22.41 15.61 46.05 1.98
3314 4718 5.992829 AGATATGCGGTATCTATCGAGTAGG 59.007 44.000 9.08 0.00 46.05 3.18
3315 4719 2.708051 TGCGGTATCTATCGAGTAGGG 58.292 52.381 0.00 0.00 29.66 3.53
3316 4720 1.401199 GCGGTATCTATCGAGTAGGGC 59.599 57.143 0.00 0.00 29.66 5.19
3317 4721 2.708051 CGGTATCTATCGAGTAGGGCA 58.292 52.381 0.00 0.00 29.66 5.36
3318 4722 3.280295 CGGTATCTATCGAGTAGGGCAT 58.720 50.000 0.00 0.00 29.66 4.40
3319 4723 3.695060 CGGTATCTATCGAGTAGGGCATT 59.305 47.826 0.00 0.00 29.66 3.56
3320 4724 4.158025 CGGTATCTATCGAGTAGGGCATTT 59.842 45.833 0.00 0.00 29.66 2.32
3321 4725 5.336531 CGGTATCTATCGAGTAGGGCATTTT 60.337 44.000 0.00 0.00 29.66 1.82
3322 4726 5.869888 GGTATCTATCGAGTAGGGCATTTTG 59.130 44.000 0.00 0.00 0.00 2.44
3323 4727 4.336889 TCTATCGAGTAGGGCATTTTGG 57.663 45.455 0.00 0.00 0.00 3.28
3324 4728 3.964688 TCTATCGAGTAGGGCATTTTGGA 59.035 43.478 0.00 0.00 0.00 3.53
3325 4729 2.691409 TCGAGTAGGGCATTTTGGAG 57.309 50.000 0.00 0.00 0.00 3.86
3326 4730 2.184533 TCGAGTAGGGCATTTTGGAGA 58.815 47.619 0.00 0.00 0.00 3.71
3327 4731 2.093658 TCGAGTAGGGCATTTTGGAGAC 60.094 50.000 0.00 0.00 0.00 3.36
3328 4732 2.644676 GAGTAGGGCATTTTGGAGACC 58.355 52.381 0.00 0.00 0.00 3.85
3329 4733 1.065418 AGTAGGGCATTTTGGAGACCG 60.065 52.381 0.00 0.00 0.00 4.79
3330 4734 1.065709 GTAGGGCATTTTGGAGACCGA 60.066 52.381 0.00 0.00 0.00 4.69
3331 4735 0.035056 AGGGCATTTTGGAGACCGAG 60.035 55.000 0.00 0.00 0.00 4.63
3332 4736 1.657751 GGGCATTTTGGAGACCGAGC 61.658 60.000 0.00 0.00 0.00 5.03
3333 4737 0.678048 GGCATTTTGGAGACCGAGCT 60.678 55.000 0.00 0.00 0.00 4.09
3334 4738 0.729690 GCATTTTGGAGACCGAGCTC 59.270 55.000 2.73 2.73 0.00 4.09
3342 4746 1.646189 GAGACCGAGCTCCATGAAAC 58.354 55.000 8.47 0.00 0.00 2.78
3343 4747 0.250513 AGACCGAGCTCCATGAAACC 59.749 55.000 8.47 0.00 0.00 3.27
3344 4748 0.744771 GACCGAGCTCCATGAAACCC 60.745 60.000 8.47 0.00 0.00 4.11
3345 4749 1.201429 ACCGAGCTCCATGAAACCCT 61.201 55.000 8.47 0.00 0.00 4.34
3346 4750 0.035056 CCGAGCTCCATGAAACCCTT 60.035 55.000 8.47 0.00 0.00 3.95
3347 4751 1.614317 CCGAGCTCCATGAAACCCTTT 60.614 52.381 8.47 0.00 0.00 3.11
3348 4752 2.355716 CCGAGCTCCATGAAACCCTTTA 60.356 50.000 8.47 0.00 0.00 1.85
3349 4753 3.545703 CGAGCTCCATGAAACCCTTTAT 58.454 45.455 8.47 0.00 0.00 1.40
3350 4754 3.947834 CGAGCTCCATGAAACCCTTTATT 59.052 43.478 8.47 0.00 0.00 1.40
3351 4755 4.399303 CGAGCTCCATGAAACCCTTTATTT 59.601 41.667 8.47 0.00 0.00 1.40
3352 4756 5.105756 CGAGCTCCATGAAACCCTTTATTTT 60.106 40.000 8.47 0.00 0.00 1.82
3353 4757 6.094881 CGAGCTCCATGAAACCCTTTATTTTA 59.905 38.462 8.47 0.00 0.00 1.52
3354 4758 7.362574 CGAGCTCCATGAAACCCTTTATTTTAA 60.363 37.037 8.47 0.00 0.00 1.52
3355 4759 8.201242 AGCTCCATGAAACCCTTTATTTTAAA 57.799 30.769 0.00 0.00 0.00 1.52
3356 4760 8.655901 AGCTCCATGAAACCCTTTATTTTAAAA 58.344 29.630 2.51 2.51 0.00 1.52
3357 4761 9.278978 GCTCCATGAAACCCTTTATTTTAAAAA 57.721 29.630 4.44 0.00 0.00 1.94
3426 4830 7.452880 ACACATGTATGCAAAGATGTAAAGT 57.547 32.000 0.00 1.15 32.06 2.66
3427 4831 7.307694 ACACATGTATGCAAAGATGTAAAGTG 58.692 34.615 0.00 0.00 32.06 3.16
3428 4832 7.040478 ACACATGTATGCAAAGATGTAAAGTGT 60.040 33.333 0.00 0.00 32.06 3.55
3429 4833 8.450180 CACATGTATGCAAAGATGTAAAGTGTA 58.550 33.333 0.00 0.00 32.06 2.90
3430 4834 9.177608 ACATGTATGCAAAGATGTAAAGTGTAT 57.822 29.630 0.00 0.00 32.06 2.29
3431 4835 9.442033 CATGTATGCAAAGATGTAAAGTGTATG 57.558 33.333 0.00 0.00 0.00 2.39
3432 4836 8.560355 TGTATGCAAAGATGTAAAGTGTATGT 57.440 30.769 0.00 0.00 0.00 2.29
3433 4837 8.450180 TGTATGCAAAGATGTAAAGTGTATGTG 58.550 33.333 0.00 0.00 0.00 3.21
3434 4838 5.698832 TGCAAAGATGTAAAGTGTATGTGC 58.301 37.500 0.00 0.00 0.00 4.57
3435 4839 4.788100 GCAAAGATGTAAAGTGTATGTGCG 59.212 41.667 0.00 0.00 0.00 5.34
3436 4840 5.390461 GCAAAGATGTAAAGTGTATGTGCGA 60.390 40.000 0.00 0.00 0.00 5.10
3437 4841 6.598525 CAAAGATGTAAAGTGTATGTGCGAA 58.401 36.000 0.00 0.00 0.00 4.70
3438 4842 6.795098 AAGATGTAAAGTGTATGTGCGAAA 57.205 33.333 0.00 0.00 0.00 3.46
3439 4843 6.795098 AGATGTAAAGTGTATGTGCGAAAA 57.205 33.333 0.00 0.00 0.00 2.29
3440 4844 7.197071 AGATGTAAAGTGTATGTGCGAAAAA 57.803 32.000 0.00 0.00 0.00 1.94
3441 4845 7.816640 AGATGTAAAGTGTATGTGCGAAAAAT 58.183 30.769 0.00 0.00 0.00 1.82
3442 4846 8.296713 AGATGTAAAGTGTATGTGCGAAAAATT 58.703 29.630 0.00 0.00 0.00 1.82
3443 4847 8.810652 ATGTAAAGTGTATGTGCGAAAAATTT 57.189 26.923 0.00 0.00 0.00 1.82
3444 4848 8.276060 TGTAAAGTGTATGTGCGAAAAATTTC 57.724 30.769 0.00 0.00 0.00 2.17
3445 4849 7.915923 TGTAAAGTGTATGTGCGAAAAATTTCA 59.084 29.630 6.69 0.00 37.01 2.69
3446 4850 6.991485 AAGTGTATGTGCGAAAAATTTCAG 57.009 33.333 6.69 1.26 37.01 3.02
3447 4851 5.460646 AGTGTATGTGCGAAAAATTTCAGG 58.539 37.500 6.69 0.00 37.01 3.86
3448 4852 5.240623 AGTGTATGTGCGAAAAATTTCAGGA 59.759 36.000 6.69 0.00 37.01 3.86
3449 4853 6.071952 AGTGTATGTGCGAAAAATTTCAGGAT 60.072 34.615 6.69 0.00 37.01 3.24
3450 4854 6.033831 GTGTATGTGCGAAAAATTTCAGGATG 59.966 38.462 6.69 0.00 37.01 3.51
3466 4870 6.455360 TCAGGATGAAATACCTTGAATTGC 57.545 37.500 0.00 0.00 45.97 3.56
3467 4871 5.066375 TCAGGATGAAATACCTTGAATTGCG 59.934 40.000 0.00 0.00 45.97 4.85
3468 4872 5.066375 CAGGATGAAATACCTTGAATTGCGA 59.934 40.000 0.00 0.00 39.69 5.10
3469 4873 5.297776 AGGATGAAATACCTTGAATTGCGAG 59.702 40.000 0.00 0.00 31.95 5.03
3470 4874 4.355543 TGAAATACCTTGAATTGCGAGC 57.644 40.909 0.00 0.00 0.00 5.03
3471 4875 4.009675 TGAAATACCTTGAATTGCGAGCT 58.990 39.130 0.00 0.00 0.00 4.09
3472 4876 4.142622 TGAAATACCTTGAATTGCGAGCTG 60.143 41.667 0.00 0.00 0.00 4.24
3473 4877 1.086696 TACCTTGAATTGCGAGCTGC 58.913 50.000 0.00 0.00 46.70 5.25
3508 4912 9.434420 AAAAACATGAACTTTGAAGATGAACAA 57.566 25.926 0.00 0.00 0.00 2.83
3509 4913 9.603921 AAAACATGAACTTTGAAGATGAACAAT 57.396 25.926 0.00 0.00 0.00 2.71
3511 4915 9.683069 AACATGAACTTTGAAGATGAACAATAC 57.317 29.630 0.00 0.00 0.00 1.89
3512 4916 8.849168 ACATGAACTTTGAAGATGAACAATACA 58.151 29.630 0.00 0.00 0.00 2.29
3513 4917 9.850628 CATGAACTTTGAAGATGAACAATACAT 57.149 29.630 0.00 0.00 0.00 2.29
3517 4921 9.793252 AACTTTGAAGATGAACAATACATATGC 57.207 29.630 1.58 0.00 0.00 3.14
3518 4922 9.182214 ACTTTGAAGATGAACAATACATATGCT 57.818 29.630 1.58 0.00 0.00 3.79
3525 4929 9.956720 AGATGAACAATACATATGCTAAAAAGC 57.043 29.630 1.58 0.00 0.00 3.51
3526 4930 9.185192 GATGAACAATACATATGCTAAAAAGCC 57.815 33.333 1.58 0.00 0.00 4.35
3527 4931 7.488322 TGAACAATACATATGCTAAAAAGCCC 58.512 34.615 1.58 0.00 0.00 5.19
3528 4932 6.405278 ACAATACATATGCTAAAAAGCCCC 57.595 37.500 1.58 0.00 0.00 5.80
3529 4933 5.896678 ACAATACATATGCTAAAAAGCCCCA 59.103 36.000 1.58 0.00 0.00 4.96
3530 4934 6.040842 ACAATACATATGCTAAAAAGCCCCAG 59.959 38.462 1.58 0.00 0.00 4.45
3531 4935 4.249638 ACATATGCTAAAAAGCCCCAGA 57.750 40.909 1.58 0.00 0.00 3.86
3532 4936 4.808042 ACATATGCTAAAAAGCCCCAGAT 58.192 39.130 1.58 0.00 0.00 2.90
3533 4937 5.211201 ACATATGCTAAAAAGCCCCAGATT 58.789 37.500 1.58 0.00 0.00 2.40
3534 4938 5.662657 ACATATGCTAAAAAGCCCCAGATTT 59.337 36.000 1.58 0.00 31.52 2.17
3535 4939 3.959535 TGCTAAAAAGCCCCAGATTTG 57.040 42.857 0.00 0.00 30.45 2.32
3536 4940 3.238597 TGCTAAAAAGCCCCAGATTTGT 58.761 40.909 0.00 0.00 30.45 2.83
3537 4941 3.258123 TGCTAAAAAGCCCCAGATTTGTC 59.742 43.478 0.00 0.00 30.45 3.18
3538 4942 3.511540 GCTAAAAAGCCCCAGATTTGTCT 59.488 43.478 0.00 0.00 30.45 3.41
3539 4943 4.021104 GCTAAAAAGCCCCAGATTTGTCTT 60.021 41.667 0.00 0.00 30.45 3.01
3540 4944 5.511373 GCTAAAAAGCCCCAGATTTGTCTTT 60.511 40.000 0.00 0.00 30.45 2.52
3541 4945 5.372343 AAAAAGCCCCAGATTTGTCTTTT 57.628 34.783 0.00 0.00 35.89 2.27
3542 4946 5.372343 AAAAGCCCCAGATTTGTCTTTTT 57.628 34.783 0.00 0.00 31.97 1.94
3587 4991 4.377839 TTTCGACCTGAAAATTTGCACA 57.622 36.364 0.00 0.00 43.46 4.57
3588 4992 3.347958 TCGACCTGAAAATTTGCACAC 57.652 42.857 0.00 0.00 0.00 3.82
3589 4993 2.685388 TCGACCTGAAAATTTGCACACA 59.315 40.909 0.00 0.00 0.00 3.72
3590 4994 3.317711 TCGACCTGAAAATTTGCACACAT 59.682 39.130 0.00 0.00 0.00 3.21
3591 4995 3.426191 CGACCTGAAAATTTGCACACATG 59.574 43.478 0.00 0.00 0.00 3.21
3592 4996 4.370917 GACCTGAAAATTTGCACACATGT 58.629 39.130 0.00 0.00 0.00 3.21
3593 4997 5.527951 GACCTGAAAATTTGCACACATGTA 58.472 37.500 0.00 0.00 0.00 2.29
3594 4998 5.288804 ACCTGAAAATTTGCACACATGTAC 58.711 37.500 0.00 0.00 0.00 2.90
3595 4999 4.382457 CCTGAAAATTTGCACACATGTACG 59.618 41.667 0.00 0.00 0.00 3.67
3596 5000 4.926244 TGAAAATTTGCACACATGTACGT 58.074 34.783 0.00 0.00 0.00 3.57
3597 5001 5.344066 TGAAAATTTGCACACATGTACGTT 58.656 33.333 0.00 0.00 0.00 3.99
3598 5002 6.495706 TGAAAATTTGCACACATGTACGTTA 58.504 32.000 0.00 0.00 0.00 3.18
3599 5003 7.142021 TGAAAATTTGCACACATGTACGTTAT 58.858 30.769 0.00 0.00 0.00 1.89
3600 5004 6.926280 AAATTTGCACACATGTACGTTATG 57.074 33.333 0.00 1.64 0.00 1.90
3601 5005 5.621197 ATTTGCACACATGTACGTTATGT 57.379 34.783 11.10 11.10 39.23 2.29
3602 5006 6.729391 ATTTGCACACATGTACGTTATGTA 57.271 33.333 15.10 3.04 36.67 2.29
3603 5007 6.729391 TTTGCACACATGTACGTTATGTAT 57.271 33.333 15.10 4.60 36.67 2.29
3604 5008 5.959652 TGCACACATGTACGTTATGTATC 57.040 39.130 15.10 9.42 36.67 2.24
3605 5009 5.656480 TGCACACATGTACGTTATGTATCT 58.344 37.500 15.10 2.41 36.67 1.98
3606 5010 6.797454 TGCACACATGTACGTTATGTATCTA 58.203 36.000 15.10 3.93 36.67 1.98
3607 5011 6.915843 TGCACACATGTACGTTATGTATCTAG 59.084 38.462 15.10 7.65 36.67 2.43
3608 5012 6.362551 GCACACATGTACGTTATGTATCTAGG 59.637 42.308 15.10 7.11 36.67 3.02
3609 5013 7.423199 CACACATGTACGTTATGTATCTAGGT 58.577 38.462 15.10 7.60 36.67 3.08
3610 5014 8.562052 CACACATGTACGTTATGTATCTAGGTA 58.438 37.037 15.10 0.00 36.67 3.08
3611 5015 9.293404 ACACATGTACGTTATGTATCTAGGTAT 57.707 33.333 15.10 0.00 36.67 2.73
3617 5021 9.713740 GTACGTTATGTATCTAGGTATATGTGC 57.286 37.037 2.67 0.00 35.02 4.57
3618 5022 8.344446 ACGTTATGTATCTAGGTATATGTGCA 57.656 34.615 2.67 0.00 0.00 4.57
3619 5023 8.967918 ACGTTATGTATCTAGGTATATGTGCAT 58.032 33.333 2.67 0.00 0.00 3.96
3620 5024 9.803315 CGTTATGTATCTAGGTATATGTGCATT 57.197 33.333 2.67 0.00 0.00 3.56
3683 5087 9.892130 TTTAAAGTTTTCAAATAAAGGCCTTCA 57.108 25.926 20.79 3.87 0.00 3.02
3685 5089 7.967890 AAGTTTTCAAATAAAGGCCTTCATG 57.032 32.000 20.79 14.99 0.00 3.07
3686 5090 6.466812 AGTTTTCAAATAAAGGCCTTCATGG 58.533 36.000 20.79 6.33 39.35 3.66
3687 5091 6.269769 AGTTTTCAAATAAAGGCCTTCATGGA 59.730 34.615 20.79 8.83 38.35 3.41
3688 5092 5.920193 TTCAAATAAAGGCCTTCATGGAG 57.080 39.130 20.79 7.92 38.35 3.86
3689 5093 3.701040 TCAAATAAAGGCCTTCATGGAGC 59.299 43.478 20.79 0.00 38.35 4.70
3690 5094 3.677156 AATAAAGGCCTTCATGGAGCT 57.323 42.857 20.79 2.41 38.35 4.09
3691 5095 2.717639 TAAAGGCCTTCATGGAGCTC 57.282 50.000 20.79 4.71 38.35 4.09
3692 5096 0.393537 AAAGGCCTTCATGGAGCTCG 60.394 55.000 20.79 0.00 38.35 5.03
3693 5097 2.203126 GGCCTTCATGGAGCTCGG 60.203 66.667 7.83 2.99 38.35 4.63
3694 5098 2.586792 GCCTTCATGGAGCTCGGT 59.413 61.111 7.83 0.00 38.35 4.69
3695 5099 1.522580 GCCTTCATGGAGCTCGGTC 60.523 63.158 7.83 0.00 38.35 4.79
3696 5100 1.965754 GCCTTCATGGAGCTCGGTCT 61.966 60.000 7.83 0.00 38.35 3.85
3697 5101 0.103937 CCTTCATGGAGCTCGGTCTC 59.896 60.000 7.83 0.00 38.35 3.36
3708 5112 3.981308 CGGTCTCCGTTTGGCATT 58.019 55.556 0.00 0.00 42.73 3.56
3709 5113 2.253513 CGGTCTCCGTTTGGCATTT 58.746 52.632 0.00 0.00 42.73 2.32
3710 5114 0.596082 CGGTCTCCGTTTGGCATTTT 59.404 50.000 0.00 0.00 42.73 1.82
3711 5115 1.000717 CGGTCTCCGTTTGGCATTTTT 60.001 47.619 0.00 0.00 42.73 1.94
3712 5116 2.403259 GGTCTCCGTTTGGCATTTTTG 58.597 47.619 0.00 0.00 34.14 2.44
3713 5117 2.403259 GTCTCCGTTTGGCATTTTTGG 58.597 47.619 0.00 0.00 34.14 3.28
3714 5118 2.035632 TCTCCGTTTGGCATTTTTGGT 58.964 42.857 0.00 0.00 34.14 3.67
3715 5119 3.004944 GTCTCCGTTTGGCATTTTTGGTA 59.995 43.478 0.00 0.00 34.14 3.25
3716 5120 3.829601 TCTCCGTTTGGCATTTTTGGTAT 59.170 39.130 0.00 0.00 34.14 2.73
3722 5126 6.094325 CCGTTTGGCATTTTTGGTATCTACTA 59.906 38.462 0.00 0.00 0.00 1.82
3743 5147 9.814899 CTACTATAGCAATAATCATGGAAGGAG 57.185 37.037 0.00 0.00 0.00 3.69
3745 5149 8.884323 ACTATAGCAATAATCATGGAAGGAGAA 58.116 33.333 0.00 0.00 0.00 2.87
3776 5180 7.328982 TGTGAATGTGCATGTATTCAAATGAAC 59.671 33.333 19.14 10.58 42.86 3.18
3784 5188 2.723124 ATTCAAATGAACGTGCCCAC 57.277 45.000 0.00 0.00 36.80 4.61
3788 5192 0.521291 AAATGAACGTGCCCACATCG 59.479 50.000 0.00 0.00 0.00 3.84
3796 5200 1.127951 CGTGCCCACATCGTTTAGTTC 59.872 52.381 0.00 0.00 0.00 3.01
3797 5201 1.467342 GTGCCCACATCGTTTAGTTCC 59.533 52.381 0.00 0.00 0.00 3.62
3817 5221 5.309323 TCCAATTATGCACTTTCCTTTCG 57.691 39.130 0.00 0.00 0.00 3.46
3831 5235 1.537202 CCTTTCGCAGTTCTTTGGAGG 59.463 52.381 0.00 0.00 0.00 4.30
3855 5259 5.544176 GTGGATCATCTTACCTCCCTTGATA 59.456 44.000 0.00 0.00 0.00 2.15
3858 5262 6.441924 GGATCATCTTACCTCCCTTGATATGA 59.558 42.308 0.00 0.00 0.00 2.15
3868 5272 6.183361 ACCTCCCTTGATATGAACATAGACAC 60.183 42.308 1.20 0.00 0.00 3.67
3873 5277 7.821359 CCCTTGATATGAACATAGACACCATAG 59.179 40.741 1.20 0.27 0.00 2.23
3879 5283 5.769367 TGAACATAGACACCATAGATACGC 58.231 41.667 0.00 0.00 0.00 4.42
3883 5287 5.415077 ACATAGACACCATAGATACGCCTAC 59.585 44.000 0.00 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
97 100 1.149627 ACCCACTTAAAGCCGCACA 59.850 52.632 0.00 0.00 0.00 4.57
172 176 3.632333 TCCGTCTCTCTCAATACCATGT 58.368 45.455 0.00 0.00 0.00 3.21
286 297 3.771160 ACTTGTCGGGGCCGCTAG 61.771 66.667 18.79 11.61 39.59 3.42
318 329 0.969894 ACCAAGACTGAAGTCCTCCG 59.030 55.000 6.84 0.00 45.85 4.63
384 395 1.985159 ACTACCAATGAAGGCCAGACA 59.015 47.619 5.01 1.63 0.00 3.41
402 413 2.867624 ACAAGATCATTGCCACACACT 58.132 42.857 0.00 0.00 0.00 3.55
406 417 3.256383 CCTTCAACAAGATCATTGCCACA 59.744 43.478 0.00 0.00 0.00 4.17
407 418 3.841643 CCTTCAACAAGATCATTGCCAC 58.158 45.455 0.00 0.00 0.00 5.01
472 484 2.549064 TCATCGCCCGATCAATGATT 57.451 45.000 0.00 0.00 31.62 2.57
519 531 0.693049 ACCTCCAAAGACGATGCCTT 59.307 50.000 0.00 0.00 0.00 4.35
538 550 2.281900 CCCGGACCGCAAAAAGGA 60.282 61.111 8.86 0.00 0.00 3.36
547 559 3.530910 AAAGACAGCACCCGGACCG 62.531 63.158 6.99 6.99 0.00 4.79
614 649 9.967245 AAAAGCGATAAAAAGAAAACAGAAAAC 57.033 25.926 0.00 0.00 0.00 2.43
616 651 9.965748 CAAAAAGCGATAAAAAGAAAACAGAAA 57.034 25.926 0.00 0.00 0.00 2.52
617 652 8.599774 CCAAAAAGCGATAAAAAGAAAACAGAA 58.400 29.630 0.00 0.00 0.00 3.02
618 653 7.254286 GCCAAAAAGCGATAAAAAGAAAACAGA 60.254 33.333 0.00 0.00 0.00 3.41
619 654 6.845782 GCCAAAAAGCGATAAAAAGAAAACAG 59.154 34.615 0.00 0.00 0.00 3.16
620 655 6.536941 AGCCAAAAAGCGATAAAAAGAAAACA 59.463 30.769 0.00 0.00 38.01 2.83
621 656 6.845782 CAGCCAAAAAGCGATAAAAAGAAAAC 59.154 34.615 0.00 0.00 38.01 2.43
632 667 0.318955 GCACACAGCCAAAAAGCGAT 60.319 50.000 0.00 0.00 38.01 4.58
635 670 1.142474 GATGCACACAGCCAAAAAGC 58.858 50.000 0.00 0.00 44.83 3.51
660 695 8.348983 ACATTAATAAAATGTCCGACTAGACG 57.651 34.615 7.66 7.66 39.77 4.18
668 703 7.307989 CCAGCCTCTACATTAATAAAATGTCCG 60.308 40.741 6.64 1.38 40.87 4.79
678 713 5.968676 TTACACCCAGCCTCTACATTAAT 57.031 39.130 0.00 0.00 0.00 1.40
681 716 3.181465 CGATTACACCCAGCCTCTACATT 60.181 47.826 0.00 0.00 0.00 2.71
741 776 4.740205 CGCTCGCTCACTGAATTTCTATTA 59.260 41.667 0.00 0.00 0.00 0.98
752 788 2.429236 ACGTTCGCTCGCTCACTG 60.429 61.111 0.00 0.00 0.00 3.66
805 841 2.171448 GGCATGGATGGAGTAGAGTTGT 59.829 50.000 0.00 0.00 0.00 3.32
855 891 2.337583 CACGTGAATTGGTCGACAGAT 58.662 47.619 18.91 7.49 0.00 2.90
883 919 6.474630 AGTGAAGAGATCTGAGCTCAAAAAT 58.525 36.000 23.31 11.44 34.85 1.82
889 948 4.275936 GGTAGAGTGAAGAGATCTGAGCTC 59.724 50.000 14.79 14.79 0.00 4.09
1026 1105 2.881111 TGAGGAGGACGAAGAAGAGA 57.119 50.000 0.00 0.00 0.00 3.10
1122 1201 3.709633 TGCAGGCTGCCGATGAGT 61.710 61.111 34.58 0.00 44.23 3.41
1433 1512 3.787001 GGAAGGAGAGCACCCGGG 61.787 72.222 22.25 22.25 0.00 5.73
1437 1516 4.475135 GGGCGGAAGGAGAGCACC 62.475 72.222 0.00 0.00 0.00 5.01
1761 1858 3.303593 CGGCGCGTTCTCTTACTCTTATA 60.304 47.826 8.43 0.00 0.00 0.98
2040 2306 8.573035 TAAACTAGTTTGACATGGGACAAATTC 58.427 33.333 27.40 6.55 39.95 2.17
2041 2307 8.472007 TAAACTAGTTTGACATGGGACAAATT 57.528 30.769 27.40 13.21 39.95 1.82
2147 2698 7.584108 TGTGCTAACATCTAAAACACTGAATG 58.416 34.615 0.00 0.00 0.00 2.67
2193 2744 4.982916 TCTTAAGTCAAAGTCGCTTGAGAC 59.017 41.667 1.63 12.88 36.01 3.36
2202 2753 6.756221 TCTAGGTTGGTCTTAAGTCAAAGTC 58.244 40.000 12.87 8.09 0.00 3.01
2262 2813 8.999431 ACAAATCAGTGTCGTCAAACTAAATAT 58.001 29.630 0.00 0.00 0.00 1.28
2292 2843 6.093357 TGCAGTTGCTTATCATTCGATGTTAA 59.907 34.615 5.62 0.00 42.66 2.01
2346 2920 0.795085 CACTCTAAGGTCGTCGACGT 59.205 55.000 34.40 19.70 40.80 4.34
2459 3033 1.821753 CTCACCTTGACGATGTCCTCT 59.178 52.381 0.00 0.00 0.00 3.69
2462 3036 0.741221 GCCTCACCTTGACGATGTCC 60.741 60.000 0.00 0.00 0.00 4.02
2495 3069 3.396685 AGAGCCTCCTTGATCACTAGT 57.603 47.619 0.00 0.00 0.00 2.57
2839 3413 1.349026 CCATATCTTCGGGCCTCATGT 59.651 52.381 0.84 0.00 0.00 3.21
3140 4544 4.815269 CATCTATCTCGGTTTCTCCATCC 58.185 47.826 0.00 0.00 35.57 3.51
3183 4587 6.403866 TTCATTTGACAGCAACCTAATTGT 57.596 33.333 0.00 0.00 40.77 2.71
3215 4619 0.904649 TAGCTGGTGACACATCCCTG 59.095 55.000 8.08 0.00 35.60 4.45
3220 4624 2.704572 GCTTTCTAGCTGGTGACACAT 58.295 47.619 8.08 0.00 44.27 3.21
3221 4625 2.169832 GCTTTCTAGCTGGTGACACA 57.830 50.000 8.08 0.00 44.27 3.72
3232 4636 2.485814 GTGTGGCCAAGAAGCTTTCTAG 59.514 50.000 7.24 0.00 39.61 2.43
3233 4637 2.158682 TGTGTGGCCAAGAAGCTTTCTA 60.159 45.455 7.24 0.00 39.61 2.10
3234 4638 1.322442 GTGTGGCCAAGAAGCTTTCT 58.678 50.000 7.24 0.00 43.15 2.52
3235 4639 1.032014 TGTGTGGCCAAGAAGCTTTC 58.968 50.000 7.24 0.00 0.00 2.62
3236 4640 1.410153 CTTGTGTGGCCAAGAAGCTTT 59.590 47.619 7.24 0.00 43.65 3.51
3237 4641 1.035139 CTTGTGTGGCCAAGAAGCTT 58.965 50.000 7.24 0.00 43.65 3.74
3238 4642 0.106519 ACTTGTGTGGCCAAGAAGCT 60.107 50.000 7.24 1.27 43.65 3.74
3239 4643 0.746659 AACTTGTGTGGCCAAGAAGC 59.253 50.000 7.24 0.00 43.65 3.86
3240 4644 3.525268 AAAACTTGTGTGGCCAAGAAG 57.475 42.857 7.24 14.47 43.65 2.85
3241 4645 3.971245 AAAAACTTGTGTGGCCAAGAA 57.029 38.095 7.24 1.92 43.65 2.52
3242 4646 4.892934 AGATAAAAACTTGTGTGGCCAAGA 59.107 37.500 7.24 0.00 43.65 3.02
3243 4647 5.200368 AGATAAAAACTTGTGTGGCCAAG 57.800 39.130 7.24 3.11 45.83 3.61
3244 4648 4.261405 CGAGATAAAAACTTGTGTGGCCAA 60.261 41.667 7.24 0.00 0.00 4.52
3245 4649 3.252215 CGAGATAAAAACTTGTGTGGCCA 59.748 43.478 0.00 0.00 0.00 5.36
3246 4650 3.252458 ACGAGATAAAAACTTGTGTGGCC 59.748 43.478 0.00 0.00 31.67 5.36
3247 4651 4.483476 ACGAGATAAAAACTTGTGTGGC 57.517 40.909 0.00 0.00 31.67 5.01
3248 4652 5.816919 ACAACGAGATAAAAACTTGTGTGG 58.183 37.500 0.00 0.00 33.00 4.17
3249 4653 6.964370 TCAACAACGAGATAAAAACTTGTGTG 59.036 34.615 0.00 0.00 33.00 3.82
3250 4654 7.079182 TCAACAACGAGATAAAAACTTGTGT 57.921 32.000 0.00 0.00 33.00 3.72
3251 4655 7.855409 TCATCAACAACGAGATAAAAACTTGTG 59.145 33.333 0.00 0.00 33.00 3.33
3252 4656 7.925993 TCATCAACAACGAGATAAAAACTTGT 58.074 30.769 0.00 0.00 33.95 3.16
3253 4657 8.955061 ATCATCAACAACGAGATAAAAACTTG 57.045 30.769 0.00 0.00 0.00 3.16
3254 4658 9.965824 AAATCATCAACAACGAGATAAAAACTT 57.034 25.926 0.00 0.00 0.00 2.66
3262 4666 8.864024 CGCTATATAAATCATCAACAACGAGAT 58.136 33.333 0.00 0.00 0.00 2.75
3263 4667 7.865889 ACGCTATATAAATCATCAACAACGAGA 59.134 33.333 0.00 0.00 0.00 4.04
3264 4668 8.007821 ACGCTATATAAATCATCAACAACGAG 57.992 34.615 0.00 0.00 0.00 4.18
3265 4669 7.940178 ACGCTATATAAATCATCAACAACGA 57.060 32.000 0.00 0.00 0.00 3.85
3266 4670 9.124807 TCTACGCTATATAAATCATCAACAACG 57.875 33.333 0.00 0.00 0.00 4.10
3272 4676 9.612620 CGCATATCTACGCTATATAAATCATCA 57.387 33.333 0.00 0.00 0.00 3.07
3273 4677 9.066939 CCGCATATCTACGCTATATAAATCATC 57.933 37.037 0.00 0.00 0.00 2.92
3274 4678 8.577296 ACCGCATATCTACGCTATATAAATCAT 58.423 33.333 0.00 0.00 0.00 2.45
3275 4679 7.937649 ACCGCATATCTACGCTATATAAATCA 58.062 34.615 0.00 0.00 0.00 2.57
3278 4682 9.281371 AGATACCGCATATCTACGCTATATAAA 57.719 33.333 5.83 0.00 46.97 1.40
3279 4683 8.843885 AGATACCGCATATCTACGCTATATAA 57.156 34.615 5.83 0.00 46.97 0.98
3303 4707 4.039245 TCTCCAAAATGCCCTACTCGATAG 59.961 45.833 0.00 0.00 0.00 2.08
3304 4708 3.964688 TCTCCAAAATGCCCTACTCGATA 59.035 43.478 0.00 0.00 0.00 2.92
3305 4709 2.771943 TCTCCAAAATGCCCTACTCGAT 59.228 45.455 0.00 0.00 0.00 3.59
3306 4710 2.093658 GTCTCCAAAATGCCCTACTCGA 60.094 50.000 0.00 0.00 0.00 4.04
3307 4711 2.280628 GTCTCCAAAATGCCCTACTCG 58.719 52.381 0.00 0.00 0.00 4.18
3308 4712 2.644676 GGTCTCCAAAATGCCCTACTC 58.355 52.381 0.00 0.00 0.00 2.59
3309 4713 1.065418 CGGTCTCCAAAATGCCCTACT 60.065 52.381 0.00 0.00 0.00 2.57
3310 4714 1.065709 TCGGTCTCCAAAATGCCCTAC 60.066 52.381 0.00 0.00 0.00 3.18
3311 4715 1.209504 CTCGGTCTCCAAAATGCCCTA 59.790 52.381 0.00 0.00 0.00 3.53
3312 4716 0.035056 CTCGGTCTCCAAAATGCCCT 60.035 55.000 0.00 0.00 0.00 5.19
3313 4717 1.657751 GCTCGGTCTCCAAAATGCCC 61.658 60.000 0.00 0.00 0.00 5.36
3314 4718 0.678048 AGCTCGGTCTCCAAAATGCC 60.678 55.000 0.00 0.00 0.00 4.40
3315 4719 0.729690 GAGCTCGGTCTCCAAAATGC 59.270 55.000 0.00 0.00 0.00 3.56
3323 4727 1.646189 GTTTCATGGAGCTCGGTCTC 58.354 55.000 7.83 0.00 0.00 3.36
3324 4728 0.250513 GGTTTCATGGAGCTCGGTCT 59.749 55.000 7.83 0.00 0.00 3.85
3325 4729 0.744771 GGGTTTCATGGAGCTCGGTC 60.745 60.000 7.83 0.00 0.00 4.79
3326 4730 1.201429 AGGGTTTCATGGAGCTCGGT 61.201 55.000 7.83 0.00 0.00 4.69
3327 4731 0.035056 AAGGGTTTCATGGAGCTCGG 60.035 55.000 7.83 0.00 0.00 4.63
3328 4732 1.826385 AAAGGGTTTCATGGAGCTCG 58.174 50.000 7.83 0.00 0.00 5.03
3329 4733 5.921962 AAATAAAGGGTTTCATGGAGCTC 57.078 39.130 4.71 4.71 0.00 4.09
3330 4734 7.790782 TTAAAATAAAGGGTTTCATGGAGCT 57.209 32.000 0.00 0.00 0.00 4.09
3331 4735 8.840833 TTTTAAAATAAAGGGTTTCATGGAGC 57.159 30.769 0.00 0.00 0.00 4.70
3400 4804 9.177608 ACTTTACATCTTTGCATACATGTGTAT 57.822 29.630 9.11 0.00 41.58 2.29
3401 4805 8.450180 CACTTTACATCTTTGCATACATGTGTA 58.550 33.333 9.11 0.00 31.83 2.90
3402 4806 7.040478 ACACTTTACATCTTTGCATACATGTGT 60.040 33.333 9.11 0.00 31.83 3.72
3403 4807 7.307694 ACACTTTACATCTTTGCATACATGTG 58.692 34.615 9.11 0.00 31.83 3.21
3404 4808 7.452880 ACACTTTACATCTTTGCATACATGT 57.547 32.000 2.69 2.69 33.95 3.21
3405 4809 9.442033 CATACACTTTACATCTTTGCATACATG 57.558 33.333 0.00 0.00 0.00 3.21
3406 4810 9.177608 ACATACACTTTACATCTTTGCATACAT 57.822 29.630 0.00 0.00 0.00 2.29
3407 4811 8.450180 CACATACACTTTACATCTTTGCATACA 58.550 33.333 0.00 0.00 0.00 2.29
3408 4812 7.429340 GCACATACACTTTACATCTTTGCATAC 59.571 37.037 0.00 0.00 0.00 2.39
3409 4813 7.471721 GCACATACACTTTACATCTTTGCATA 58.528 34.615 0.00 0.00 0.00 3.14
3410 4814 6.324819 GCACATACACTTTACATCTTTGCAT 58.675 36.000 0.00 0.00 0.00 3.96
3411 4815 5.616645 CGCACATACACTTTACATCTTTGCA 60.617 40.000 0.00 0.00 0.00 4.08
3412 4816 4.788100 CGCACATACACTTTACATCTTTGC 59.212 41.667 0.00 0.00 0.00 3.68
3413 4817 6.164408 TCGCACATACACTTTACATCTTTG 57.836 37.500 0.00 0.00 0.00 2.77
3414 4818 6.795098 TTCGCACATACACTTTACATCTTT 57.205 33.333 0.00 0.00 0.00 2.52
3415 4819 6.795098 TTTCGCACATACACTTTACATCTT 57.205 33.333 0.00 0.00 0.00 2.40
3416 4820 6.795098 TTTTCGCACATACACTTTACATCT 57.205 33.333 0.00 0.00 0.00 2.90
3417 4821 8.447787 AATTTTTCGCACATACACTTTACATC 57.552 30.769 0.00 0.00 0.00 3.06
3418 4822 8.810652 AAATTTTTCGCACATACACTTTACAT 57.189 26.923 0.00 0.00 0.00 2.29
3419 4823 7.915923 TGAAATTTTTCGCACATACACTTTACA 59.084 29.630 0.00 0.00 40.01 2.41
3420 4824 8.276060 TGAAATTTTTCGCACATACACTTTAC 57.724 30.769 0.00 0.00 40.01 2.01
3421 4825 7.593273 CCTGAAATTTTTCGCACATACACTTTA 59.407 33.333 0.00 0.00 40.01 1.85
3422 4826 6.420604 CCTGAAATTTTTCGCACATACACTTT 59.579 34.615 0.00 0.00 40.01 2.66
3423 4827 5.920273 CCTGAAATTTTTCGCACATACACTT 59.080 36.000 0.00 0.00 40.01 3.16
3424 4828 5.240623 TCCTGAAATTTTTCGCACATACACT 59.759 36.000 0.00 0.00 40.01 3.55
3425 4829 5.457140 TCCTGAAATTTTTCGCACATACAC 58.543 37.500 0.00 0.00 40.01 2.90
3426 4830 5.697473 TCCTGAAATTTTTCGCACATACA 57.303 34.783 0.00 0.00 40.01 2.29
3427 4831 6.321717 TCATCCTGAAATTTTTCGCACATAC 58.678 36.000 0.00 0.00 40.01 2.39
3428 4832 6.507958 TCATCCTGAAATTTTTCGCACATA 57.492 33.333 0.00 0.00 40.01 2.29
3429 4833 5.389859 TCATCCTGAAATTTTTCGCACAT 57.610 34.783 0.00 0.00 40.01 3.21
3430 4834 4.844998 TCATCCTGAAATTTTTCGCACA 57.155 36.364 0.00 0.00 40.01 4.57
3442 4846 6.404623 CGCAATTCAAGGTATTTCATCCTGAA 60.405 38.462 0.00 0.00 34.03 3.02
3443 4847 5.066375 CGCAATTCAAGGTATTTCATCCTGA 59.934 40.000 0.00 0.00 33.97 3.86
3444 4848 5.066375 TCGCAATTCAAGGTATTTCATCCTG 59.934 40.000 0.00 0.00 33.97 3.86
3445 4849 5.192927 TCGCAATTCAAGGTATTTCATCCT 58.807 37.500 0.00 0.00 35.34 3.24
3446 4850 5.499139 TCGCAATTCAAGGTATTTCATCC 57.501 39.130 0.00 0.00 0.00 3.51
3447 4851 4.972440 GCTCGCAATTCAAGGTATTTCATC 59.028 41.667 0.00 0.00 0.00 2.92
3448 4852 4.641989 AGCTCGCAATTCAAGGTATTTCAT 59.358 37.500 0.00 0.00 0.00 2.57
3449 4853 4.009675 AGCTCGCAATTCAAGGTATTTCA 58.990 39.130 0.00 0.00 0.00 2.69
3450 4854 4.346129 CAGCTCGCAATTCAAGGTATTTC 58.654 43.478 0.00 0.00 0.00 2.17
3451 4855 3.428045 GCAGCTCGCAATTCAAGGTATTT 60.428 43.478 3.64 0.00 41.79 1.40
3452 4856 2.098117 GCAGCTCGCAATTCAAGGTATT 59.902 45.455 3.64 0.00 41.79 1.89
3453 4857 1.672881 GCAGCTCGCAATTCAAGGTAT 59.327 47.619 3.64 0.00 41.79 2.73
3454 4858 1.086696 GCAGCTCGCAATTCAAGGTA 58.913 50.000 3.64 0.00 41.79 3.08
3455 4859 1.878775 GCAGCTCGCAATTCAAGGT 59.121 52.632 3.64 0.00 41.79 3.50
3456 4860 4.779819 GCAGCTCGCAATTCAAGG 57.220 55.556 3.64 0.00 41.79 3.61
3482 4886 9.434420 TTGTTCATCTTCAAAGTTCATGTTTTT 57.566 25.926 0.00 0.00 0.00 1.94
3483 4887 9.603921 ATTGTTCATCTTCAAAGTTCATGTTTT 57.396 25.926 0.00 0.00 0.00 2.43
3485 4889 9.683069 GTATTGTTCATCTTCAAAGTTCATGTT 57.317 29.630 0.00 0.00 0.00 2.71
3486 4890 8.849168 TGTATTGTTCATCTTCAAAGTTCATGT 58.151 29.630 0.00 0.00 0.00 3.21
3487 4891 9.850628 ATGTATTGTTCATCTTCAAAGTTCATG 57.149 29.630 0.00 0.00 0.00 3.07
3491 4895 9.793252 GCATATGTATTGTTCATCTTCAAAGTT 57.207 29.630 4.29 0.00 0.00 2.66
3492 4896 9.182214 AGCATATGTATTGTTCATCTTCAAAGT 57.818 29.630 4.29 0.00 0.00 2.66
3499 4903 9.956720 GCTTTTTAGCATATGTATTGTTCATCT 57.043 29.630 4.29 0.00 34.41 2.90
3500 4904 9.185192 GGCTTTTTAGCATATGTATTGTTCATC 57.815 33.333 4.29 0.00 36.33 2.92
3501 4905 8.143835 GGGCTTTTTAGCATATGTATTGTTCAT 58.856 33.333 4.29 0.00 36.33 2.57
3502 4906 7.417342 GGGGCTTTTTAGCATATGTATTGTTCA 60.417 37.037 4.29 0.00 36.33 3.18
3503 4907 6.923508 GGGGCTTTTTAGCATATGTATTGTTC 59.076 38.462 4.29 0.00 36.33 3.18
3504 4908 6.382570 TGGGGCTTTTTAGCATATGTATTGTT 59.617 34.615 4.29 0.00 36.33 2.83
3505 4909 5.896678 TGGGGCTTTTTAGCATATGTATTGT 59.103 36.000 4.29 0.00 36.33 2.71
3506 4910 6.265196 TCTGGGGCTTTTTAGCATATGTATTG 59.735 38.462 4.29 0.00 36.33 1.90
3507 4911 6.372931 TCTGGGGCTTTTTAGCATATGTATT 58.627 36.000 4.29 0.00 36.33 1.89
3508 4912 5.952387 TCTGGGGCTTTTTAGCATATGTAT 58.048 37.500 4.29 0.00 36.33 2.29
3509 4913 5.381184 TCTGGGGCTTTTTAGCATATGTA 57.619 39.130 4.29 0.00 36.33 2.29
3510 4914 4.249638 TCTGGGGCTTTTTAGCATATGT 57.750 40.909 4.29 0.00 36.33 2.29
3511 4915 5.796424 AATCTGGGGCTTTTTAGCATATG 57.204 39.130 0.00 0.00 36.33 1.78
3512 4916 5.662657 ACAAATCTGGGGCTTTTTAGCATAT 59.337 36.000 0.00 0.00 36.33 1.78
3513 4917 5.022787 ACAAATCTGGGGCTTTTTAGCATA 58.977 37.500 0.00 0.00 36.33 3.14
3514 4918 3.840078 ACAAATCTGGGGCTTTTTAGCAT 59.160 39.130 0.00 0.00 36.33 3.79
3515 4919 3.238597 ACAAATCTGGGGCTTTTTAGCA 58.761 40.909 0.00 0.00 36.33 3.49
3516 4920 3.511540 AGACAAATCTGGGGCTTTTTAGC 59.488 43.478 0.00 0.00 32.29 3.09
3517 4921 5.728637 AAGACAAATCTGGGGCTTTTTAG 57.271 39.130 0.00 0.00 34.48 1.85
3518 4922 6.493189 AAAAGACAAATCTGGGGCTTTTTA 57.507 33.333 0.00 0.00 34.48 1.52
3519 4923 5.372343 AAAAGACAAATCTGGGGCTTTTT 57.628 34.783 0.00 0.00 34.48 1.94
3520 4924 5.372343 AAAAAGACAAATCTGGGGCTTTT 57.628 34.783 0.00 0.00 35.69 2.27
3552 4956 9.619316 TTTCAGGTCGAAATACATTAAAATGTG 57.381 29.630 16.68 2.02 42.68 3.21
3558 4962 9.134734 GCAAATTTTCAGGTCGAAATACATTAA 57.865 29.630 0.00 0.00 43.12 1.40
3559 4963 8.300286 TGCAAATTTTCAGGTCGAAATACATTA 58.700 29.630 0.00 0.00 43.12 1.90
3560 4964 7.116233 GTGCAAATTTTCAGGTCGAAATACATT 59.884 33.333 0.00 0.00 43.12 2.71
3561 4965 6.586082 GTGCAAATTTTCAGGTCGAAATACAT 59.414 34.615 0.00 0.00 43.12 2.29
3562 4966 5.918011 GTGCAAATTTTCAGGTCGAAATACA 59.082 36.000 0.00 0.00 43.12 2.29
3563 4967 5.918011 TGTGCAAATTTTCAGGTCGAAATAC 59.082 36.000 0.00 0.00 43.12 1.89
3564 4968 5.918011 GTGTGCAAATTTTCAGGTCGAAATA 59.082 36.000 0.00 0.00 43.12 1.40
3565 4969 4.744631 GTGTGCAAATTTTCAGGTCGAAAT 59.255 37.500 0.00 0.00 43.12 2.17
3566 4970 4.109050 GTGTGCAAATTTTCAGGTCGAAA 58.891 39.130 0.00 0.00 41.95 3.46
3567 4971 3.129462 TGTGTGCAAATTTTCAGGTCGAA 59.871 39.130 0.00 0.00 0.00 3.71
3568 4972 2.685388 TGTGTGCAAATTTTCAGGTCGA 59.315 40.909 0.00 0.00 0.00 4.20
3569 4973 3.077229 TGTGTGCAAATTTTCAGGTCG 57.923 42.857 0.00 0.00 0.00 4.79
3570 4974 4.370917 ACATGTGTGCAAATTTTCAGGTC 58.629 39.130 0.00 0.00 0.00 3.85
3571 4975 4.405116 ACATGTGTGCAAATTTTCAGGT 57.595 36.364 0.00 0.00 0.00 4.00
3572 4976 4.382457 CGTACATGTGTGCAAATTTTCAGG 59.618 41.667 9.11 0.00 0.00 3.86
3573 4977 4.975502 ACGTACATGTGTGCAAATTTTCAG 59.024 37.500 9.11 0.00 0.00 3.02
3574 4978 4.926244 ACGTACATGTGTGCAAATTTTCA 58.074 34.783 9.11 0.00 0.00 2.69
3575 4979 5.881637 AACGTACATGTGTGCAAATTTTC 57.118 34.783 9.11 0.00 0.00 2.29
3576 4980 6.920758 ACATAACGTACATGTGTGCAAATTTT 59.079 30.769 9.11 0.00 35.33 1.82
3577 4981 6.442952 ACATAACGTACATGTGTGCAAATTT 58.557 32.000 9.11 0.00 35.33 1.82
3578 4982 6.007936 ACATAACGTACATGTGTGCAAATT 57.992 33.333 9.11 0.00 35.33 1.82
3579 4983 5.621197 ACATAACGTACATGTGTGCAAAT 57.379 34.783 9.11 0.00 35.33 2.32
3580 4984 6.592220 AGATACATAACGTACATGTGTGCAAA 59.408 34.615 20.35 5.22 37.22 3.68
3581 4985 6.103330 AGATACATAACGTACATGTGTGCAA 58.897 36.000 20.35 5.79 37.22 4.08
3582 4986 5.656480 AGATACATAACGTACATGTGTGCA 58.344 37.500 20.35 6.08 37.22 4.57
3583 4987 6.362551 CCTAGATACATAACGTACATGTGTGC 59.637 42.308 20.35 11.96 37.22 4.57
3584 4988 7.423199 ACCTAGATACATAACGTACATGTGTG 58.577 38.462 20.35 2.88 37.22 3.82
3585 4989 7.578310 ACCTAGATACATAACGTACATGTGT 57.422 36.000 20.35 15.76 37.22 3.72
3591 4995 9.713740 GCACATATACCTAGATACATAACGTAC 57.286 37.037 0.00 0.00 31.27 3.67
3592 4996 9.452287 TGCACATATACCTAGATACATAACGTA 57.548 33.333 0.00 0.00 0.00 3.57
3593 4997 8.344446 TGCACATATACCTAGATACATAACGT 57.656 34.615 0.00 0.00 0.00 3.99
3594 4998 9.803315 AATGCACATATACCTAGATACATAACG 57.197 33.333 0.00 0.00 0.00 3.18
3657 5061 9.892130 TGAAGGCCTTTATTTGAAAACTTTAAA 57.108 25.926 21.54 0.00 0.00 1.52
3659 5063 9.487790 CATGAAGGCCTTTATTTGAAAACTTTA 57.512 29.630 21.54 0.00 0.00 1.85
3660 5064 7.445096 CCATGAAGGCCTTTATTTGAAAACTTT 59.555 33.333 21.54 0.00 0.00 2.66
3661 5065 6.936335 CCATGAAGGCCTTTATTTGAAAACTT 59.064 34.615 21.54 0.00 0.00 2.66
3662 5066 6.269769 TCCATGAAGGCCTTTATTTGAAAACT 59.730 34.615 21.54 0.00 37.29 2.66
3663 5067 6.463360 TCCATGAAGGCCTTTATTTGAAAAC 58.537 36.000 21.54 2.76 37.29 2.43
3664 5068 6.678568 TCCATGAAGGCCTTTATTTGAAAA 57.321 33.333 21.54 0.00 37.29 2.29
3665 5069 5.337491 GCTCCATGAAGGCCTTTATTTGAAA 60.337 40.000 21.54 3.38 37.29 2.69
3666 5070 4.160252 GCTCCATGAAGGCCTTTATTTGAA 59.840 41.667 21.54 5.11 37.29 2.69
3667 5071 3.701040 GCTCCATGAAGGCCTTTATTTGA 59.299 43.478 21.54 17.32 37.29 2.69
3668 5072 3.703052 AGCTCCATGAAGGCCTTTATTTG 59.297 43.478 21.54 14.05 37.29 2.32
3669 5073 3.956848 GAGCTCCATGAAGGCCTTTATTT 59.043 43.478 21.54 0.00 37.29 1.40
3670 5074 3.560105 GAGCTCCATGAAGGCCTTTATT 58.440 45.455 21.54 5.18 37.29 1.40
3671 5075 2.486191 CGAGCTCCATGAAGGCCTTTAT 60.486 50.000 21.54 18.94 37.29 1.40
3672 5076 1.134401 CGAGCTCCATGAAGGCCTTTA 60.134 52.381 21.54 17.17 37.29 1.85
3673 5077 0.393537 CGAGCTCCATGAAGGCCTTT 60.394 55.000 21.54 0.44 37.29 3.11
3674 5078 1.222936 CGAGCTCCATGAAGGCCTT 59.777 57.895 20.65 20.65 37.29 4.35
3675 5079 2.739996 CCGAGCTCCATGAAGGCCT 61.740 63.158 8.47 0.00 37.29 5.19
3676 5080 2.203126 CCGAGCTCCATGAAGGCC 60.203 66.667 8.47 0.00 37.29 5.19
3677 5081 1.522580 GACCGAGCTCCATGAAGGC 60.523 63.158 8.47 0.00 37.29 4.35
3678 5082 0.103937 GAGACCGAGCTCCATGAAGG 59.896 60.000 8.47 4.75 39.47 3.46
3679 5083 3.657956 GAGACCGAGCTCCATGAAG 57.342 57.895 8.47 0.00 0.00 3.02
3692 5096 2.403259 CAAAAATGCCAAACGGAGACC 58.597 47.619 0.00 0.00 0.00 3.85
3693 5097 2.223947 ACCAAAAATGCCAAACGGAGAC 60.224 45.455 0.00 0.00 0.00 3.36
3694 5098 2.035632 ACCAAAAATGCCAAACGGAGA 58.964 42.857 0.00 0.00 0.00 3.71
3695 5099 2.524569 ACCAAAAATGCCAAACGGAG 57.475 45.000 0.00 0.00 0.00 4.63
3696 5100 3.829601 AGATACCAAAAATGCCAAACGGA 59.170 39.130 0.00 0.00 0.00 4.69
3697 5101 4.186856 AGATACCAAAAATGCCAAACGG 57.813 40.909 0.00 0.00 0.00 4.44
3698 5102 5.949735 AGTAGATACCAAAAATGCCAAACG 58.050 37.500 0.00 0.00 0.00 3.60
3700 5104 8.846211 GCTATAGTAGATACCAAAAATGCCAAA 58.154 33.333 0.84 0.00 0.00 3.28
3701 5105 7.996066 TGCTATAGTAGATACCAAAAATGCCAA 59.004 33.333 0.84 0.00 0.00 4.52
3702 5106 7.513856 TGCTATAGTAGATACCAAAAATGCCA 58.486 34.615 0.84 0.00 0.00 4.92
3703 5107 7.979444 TGCTATAGTAGATACCAAAAATGCC 57.021 36.000 0.84 0.00 0.00 4.40
3716 5120 9.547279 TCCTTCCATGATTATTGCTATAGTAGA 57.453 33.333 0.84 0.00 0.00 2.59
3722 5126 9.597681 AATTTCTCCTTCCATGATTATTGCTAT 57.402 29.630 0.00 0.00 0.00 2.97
3731 5135 8.857098 CATTCACATAATTTCTCCTTCCATGAT 58.143 33.333 0.00 0.00 0.00 2.45
3736 5140 6.127647 TGCACATTCACATAATTTCTCCTTCC 60.128 38.462 0.00 0.00 0.00 3.46
3737 5141 6.855836 TGCACATTCACATAATTTCTCCTTC 58.144 36.000 0.00 0.00 0.00 3.46
3741 5145 9.740239 AATACATGCACATTCACATAATTTCTC 57.260 29.630 0.00 0.00 0.00 2.87
3743 5147 9.518906 TGAATACATGCACATTCACATAATTTC 57.481 29.630 13.45 0.00 36.49 2.17
3745 5149 9.872721 TTTGAATACATGCACATTCACATAATT 57.127 25.926 15.94 0.00 40.06 1.40
3776 5180 1.127951 GAACTAAACGATGTGGGCACG 59.872 52.381 0.00 0.00 0.00 5.34
3784 5188 6.785191 AGTGCATAATTGGAACTAAACGATG 58.215 36.000 0.00 0.00 0.00 3.84
3788 5192 7.602753 AGGAAAGTGCATAATTGGAACTAAAC 58.397 34.615 0.00 0.00 0.00 2.01
3796 5200 3.859386 GCGAAAGGAAAGTGCATAATTGG 59.141 43.478 0.00 0.00 0.00 3.16
3797 5201 4.484236 TGCGAAAGGAAAGTGCATAATTG 58.516 39.130 0.00 0.00 0.00 2.32
3817 5221 2.087646 GATCCACCTCCAAAGAACTGC 58.912 52.381 0.00 0.00 0.00 4.40
3831 5235 3.711704 TCAAGGGAGGTAAGATGATCCAC 59.288 47.826 0.00 0.00 33.24 4.02
3855 5259 6.390721 GCGTATCTATGGTGTCTATGTTCAT 58.609 40.000 0.00 0.00 0.00 2.57
3858 5262 4.833380 AGGCGTATCTATGGTGTCTATGTT 59.167 41.667 0.00 0.00 0.00 2.71
3868 5272 9.084164 GTGTAATATTTGTAGGCGTATCTATGG 57.916 37.037 0.00 0.00 0.00 2.74
3873 5277 6.638063 TGTCGTGTAATATTTGTAGGCGTATC 59.362 38.462 0.00 0.00 0.00 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.