Multiple sequence alignment - TraesCS5D01G067600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G067600 chr5D 100.000 6945 0 0 1 6945 63104874 63111818 0.000000e+00 12826.0
1 TraesCS5D01G067600 chr5D 92.647 816 48 8 9 817 189169338 189170148 0.000000e+00 1164.0
2 TraesCS5D01G067600 chr5D 82.287 446 56 15 3422 3853 302106413 302106849 1.420000e-96 364.0
3 TraesCS5D01G067600 chr5D 77.305 564 87 23 3317 3868 114006405 114006939 1.890000e-75 294.0
4 TraesCS5D01G067600 chr5D 78.025 405 60 14 3218 3618 467771321 467770942 1.950000e-55 228.0
5 TraesCS5D01G067600 chr5D 95.918 49 1 1 2788 2835 63107619 63107667 2.080000e-10 78.7
6 TraesCS5D01G067600 chr5D 95.918 49 1 1 2746 2794 63107661 63107708 2.080000e-10 78.7
7 TraesCS5D01G067600 chr5A 91.323 1913 113 28 2788 4691 52440235 52442103 0.000000e+00 2564.0
8 TraesCS5D01G067600 chr5A 91.618 1527 88 19 845 2358 52438415 52439914 0.000000e+00 2074.0
9 TraesCS5D01G067600 chr5A 91.952 1429 67 16 4853 6236 52442103 52443528 0.000000e+00 1958.0
10 TraesCS5D01G067600 chr5A 87.763 523 32 21 6356 6871 52443840 52444337 3.610000e-162 582.0
11 TraesCS5D01G067600 chr5A 88.674 362 19 8 2439 2794 52439936 52440281 8.330000e-114 422.0
12 TraesCS5D01G067600 chr5A 93.976 166 9 1 2300 2465 300075063 300074899 4.160000e-62 250.0
13 TraesCS5D01G067600 chr5A 78.010 191 29 9 3316 3501 552079987 552080169 2.650000e-19 108.0
14 TraesCS5D01G067600 chr5A 90.476 63 4 2 6853 6914 52444358 52444419 1.610000e-11 82.4
15 TraesCS5D01G067600 chr5B 87.450 1737 124 41 4521 6215 67538343 67536659 0.000000e+00 1914.0
16 TraesCS5D01G067600 chr5B 94.867 1169 37 8 870 2033 67541364 67540214 0.000000e+00 1805.0
17 TraesCS5D01G067600 chr5B 88.750 560 30 14 6364 6914 67536319 67535784 0.000000e+00 654.0
18 TraesCS5D01G067600 chr5B 81.582 809 105 22 2025 2797 67539886 67539086 4.570000e-176 628.0
19 TraesCS5D01G067600 chr5B 86.301 438 46 11 4043 4468 67538778 67538343 1.360000e-126 464.0
20 TraesCS5D01G067600 chr5B 93.976 166 9 1 2300 2465 679660981 679660817 4.160000e-62 250.0
21 TraesCS5D01G067600 chr5B 83.913 230 25 7 3511 3728 345140044 345140273 7.060000e-50 209.0
22 TraesCS5D01G067600 chr5B 82.063 223 39 1 3648 3870 470265788 470265567 9.200000e-44 189.0
23 TraesCS5D01G067600 chr5B 84.848 132 12 6 3905 4035 181480397 181480521 7.310000e-25 126.0
24 TraesCS5D01G067600 chr7D 91.474 821 56 9 7 817 92138596 92137780 0.000000e+00 1116.0
25 TraesCS5D01G067600 chr7D 93.976 166 9 1 2300 2465 203554262 203554426 4.160000e-62 250.0
26 TraesCS5D01G067600 chr7D 93.976 166 9 1 2300 2465 626696406 626696570 4.160000e-62 250.0
27 TraesCS5D01G067600 chr7D 83.505 97 10 5 3925 4020 536005733 536005824 1.240000e-12 86.1
28 TraesCS5D01G067600 chr7D 90.909 55 3 2 3905 3959 535976889 535976941 9.660000e-09 73.1
29 TraesCS5D01G067600 chr2A 91.288 815 60 8 10 817 76511919 76512729 0.000000e+00 1101.0
30 TraesCS5D01G067600 chr1A 92.035 791 46 10 35 817 554907538 554908319 0.000000e+00 1096.0
31 TraesCS5D01G067600 chr1A 90.049 814 63 11 9 817 504415665 504414865 0.000000e+00 1038.0
32 TraesCS5D01G067600 chr7A 90.120 830 54 13 4 817 595049123 595048306 0.000000e+00 1053.0
33 TraesCS5D01G067600 chr7A 89.841 817 60 16 9 817 149851101 149851902 0.000000e+00 1027.0
34 TraesCS5D01G067600 chr7A 87.037 108 9 4 3927 4030 264926252 264926358 4.400000e-22 117.0
35 TraesCS5D01G067600 chr4A 90.307 815 63 8 6 817 32097721 32096920 0.000000e+00 1053.0
36 TraesCS5D01G067600 chr4A 80.120 166 32 1 3335 3499 717000936 717001101 9.460000e-24 122.0
37 TraesCS5D01G067600 chr3A 89.621 819 75 6 4 817 111087783 111088596 0.000000e+00 1033.0
38 TraesCS5D01G067600 chr1D 80.880 523 75 12 3317 3824 484466741 484466229 8.450000e-104 388.0
39 TraesCS5D01G067600 chr1D 77.113 568 103 20 3315 3873 484427315 484426766 3.150000e-78 303.0
40 TraesCS5D01G067600 chr1B 79.732 523 71 14 3316 3824 674798186 674797685 5.160000e-91 346.0
41 TraesCS5D01G067600 chr1B 83.172 309 41 8 3563 3870 112694692 112694394 8.880000e-69 272.0
42 TraesCS5D01G067600 chr1B 93.976 166 9 1 2300 2465 53333549 53333385 4.160000e-62 250.0
43 TraesCS5D01G067600 chr1B 94.545 55 2 1 3981 4035 9656569 9656516 4.460000e-12 84.2
44 TraesCS5D01G067600 chr1B 83.951 81 10 3 3896 3974 31856012 31856091 2.690000e-09 75.0
45 TraesCS5D01G067600 chr6B 83.642 324 41 6 3551 3873 226149096 226148784 1.890000e-75 294.0
46 TraesCS5D01G067600 chr4B 77.800 509 86 11 3354 3861 70408810 70409292 8.810000e-74 289.0
47 TraesCS5D01G067600 chrUn 93.976 166 9 1 2300 2465 189394623 189394459 4.160000e-62 250.0
48 TraesCS5D01G067600 chrUn 93.976 166 9 1 2300 2465 389303248 389303412 4.160000e-62 250.0
49 TraesCS5D01G067600 chr6A 93.976 166 9 1 2300 2465 608882733 608882897 4.160000e-62 250.0
50 TraesCS5D01G067600 chr6A 81.308 107 10 7 3915 4017 444867466 444867566 2.080000e-10 78.7
51 TraesCS5D01G067600 chr4D 93.976 166 9 1 2300 2465 123414966 123414802 4.160000e-62 250.0
52 TraesCS5D01G067600 chr3B 83.069 189 27 5 3315 3500 549021826 549022012 4.310000e-37 167.0
53 TraesCS5D01G067600 chr3B 84.375 96 12 3 3925 4018 4594540 4594634 2.670000e-14 91.6
54 TraesCS5D01G067600 chr3B 100.000 32 0 0 4003 4034 808801551 808801520 7.520000e-05 60.2
55 TraesCS5D01G067600 chr3D 82.682 179 27 4 3314 3489 421661713 421661890 9.330000e-34 156.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G067600 chr5D 63104874 63111818 6944 False 12826.0 12826 100.000 1 6945 1 chr5D.!!$F1 6944
1 TraesCS5D01G067600 chr5D 189169338 189170148 810 False 1164.0 1164 92.647 9 817 1 chr5D.!!$F3 808
2 TraesCS5D01G067600 chr5D 114006405 114006939 534 False 294.0 294 77.305 3317 3868 1 chr5D.!!$F2 551
3 TraesCS5D01G067600 chr5A 52438415 52444419 6004 False 1280.4 2564 90.301 845 6914 6 chr5A.!!$F2 6069
4 TraesCS5D01G067600 chr5B 67535784 67541364 5580 True 1093.0 1914 87.790 870 6914 5 chr5B.!!$R3 6044
5 TraesCS5D01G067600 chr7D 92137780 92138596 816 True 1116.0 1116 91.474 7 817 1 chr7D.!!$R1 810
6 TraesCS5D01G067600 chr2A 76511919 76512729 810 False 1101.0 1101 91.288 10 817 1 chr2A.!!$F1 807
7 TraesCS5D01G067600 chr1A 554907538 554908319 781 False 1096.0 1096 92.035 35 817 1 chr1A.!!$F1 782
8 TraesCS5D01G067600 chr1A 504414865 504415665 800 True 1038.0 1038 90.049 9 817 1 chr1A.!!$R1 808
9 TraesCS5D01G067600 chr7A 595048306 595049123 817 True 1053.0 1053 90.120 4 817 1 chr7A.!!$R1 813
10 TraesCS5D01G067600 chr7A 149851101 149851902 801 False 1027.0 1027 89.841 9 817 1 chr7A.!!$F1 808
11 TraesCS5D01G067600 chr4A 32096920 32097721 801 True 1053.0 1053 90.307 6 817 1 chr4A.!!$R1 811
12 TraesCS5D01G067600 chr3A 111087783 111088596 813 False 1033.0 1033 89.621 4 817 1 chr3A.!!$F1 813
13 TraesCS5D01G067600 chr1D 484466229 484466741 512 True 388.0 388 80.880 3317 3824 1 chr1D.!!$R2 507
14 TraesCS5D01G067600 chr1D 484426766 484427315 549 True 303.0 303 77.113 3315 3873 1 chr1D.!!$R1 558
15 TraesCS5D01G067600 chr1B 674797685 674798186 501 True 346.0 346 79.732 3316 3824 1 chr1B.!!$R4 508

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
828 866 0.594028 CGGCGCGTAGATGCTCTAAA 60.594 55.0 8.43 0.0 29.58 1.85 F
2125 2510 0.035439 TTGGAAGGAATCTGACGGCC 60.035 55.0 0.00 0.0 0.00 6.13 F
2388 2788 0.179234 TCAAACAGTCAGTCGGCCAA 59.821 50.0 2.24 0.0 0.00 4.52 F
3861 4328 0.325933 CCATGACTCTCCAGGTGCAA 59.674 55.0 0.00 0.0 0.00 4.08 F
4020 4487 0.963962 CAAAGGGTGCATGTGAGCTT 59.036 50.0 0.00 0.0 34.99 3.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2366 2766 0.232303 GCCGACTGACTGTTTGAACG 59.768 55.000 0.00 0.00 0.00 3.95 R
3204 3646 0.035534 TGCGTCACTATGCAACCCAT 60.036 50.000 0.00 0.00 44.62 4.00 R
3863 4330 0.182537 CCAGACCTCCACAAACACCA 59.817 55.000 0.00 0.00 0.00 4.17 R
4929 5415 0.952280 CCTGCATGCCAGCTGATAAG 59.048 55.000 17.39 1.79 40.36 1.73 R
5966 6500 2.245546 TCCCAATGGATTTCATCTGCCT 59.754 45.455 0.00 0.00 35.03 4.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
98 107 3.767230 CGTCCGCGTGCTTCTGTG 61.767 66.667 4.92 0.00 0.00 3.66
110 119 1.005037 TTCTGTGCGGCACCTACTG 60.005 57.895 28.57 14.00 32.73 2.74
246 258 1.440850 CACGAACTTCGCCGACGTA 60.441 57.895 11.15 0.00 45.12 3.57
285 297 1.072505 GGAGTTGGCGTCTTTCCCA 59.927 57.895 0.00 0.00 0.00 4.37
300 312 1.118965 TCCCACGGCTTCTCACTGAA 61.119 55.000 0.00 0.00 0.00 3.02
402 414 2.434185 TGCTTCCCGCACGACATC 60.434 61.111 0.00 0.00 45.47 3.06
403 415 2.434185 GCTTCCCGCACGACATCA 60.434 61.111 0.00 0.00 38.92 3.07
404 416 1.815421 GCTTCCCGCACGACATCAT 60.815 57.895 0.00 0.00 38.92 2.45
427 439 2.446341 GAGGAACAGTTCTTCGCCG 58.554 57.895 13.13 0.00 0.00 6.46
620 641 1.883275 CACTGAGACAGAGTCCGAGTT 59.117 52.381 5.76 0.00 35.18 3.01
825 863 4.933064 GCGGCGCGTAGATGCTCT 62.933 66.667 19.09 0.00 0.00 4.09
826 864 2.637589 CGGCGCGTAGATGCTCTA 59.362 61.111 8.43 0.00 0.00 2.43
827 865 1.008881 CGGCGCGTAGATGCTCTAA 60.009 57.895 8.43 0.00 29.58 2.10
828 866 0.594028 CGGCGCGTAGATGCTCTAAA 60.594 55.000 8.43 0.00 29.58 1.85
829 867 1.132588 GGCGCGTAGATGCTCTAAAG 58.867 55.000 8.43 0.00 29.58 1.85
840 878 1.140816 GCTCTAAAGCGGCTATTCGG 58.859 55.000 1.35 0.00 39.10 4.30
841 879 1.140816 CTCTAAAGCGGCTATTCGGC 58.859 55.000 1.35 0.00 40.86 5.54
848 886 2.384899 GCGGCTATTCGGCTTTAAAG 57.615 50.000 11.02 11.02 37.94 1.85
916 954 1.301401 CCCGCCGAGACAAGACAAA 60.301 57.895 0.00 0.00 0.00 2.83
1206 1252 1.374947 CACTTCCCCTTCCTTCGCA 59.625 57.895 0.00 0.00 0.00 5.10
1303 1349 3.394836 GGGACTGCCTCCGCTTCT 61.395 66.667 0.00 0.00 40.56 2.85
1359 1405 4.451150 TGCGGCCGCTACAAGGAG 62.451 66.667 45.79 7.18 42.51 3.69
1378 1424 2.738521 GCTTCGACTTCAGCGCCA 60.739 61.111 2.29 0.00 0.00 5.69
1467 1513 1.352156 GCCACGACATCGAGTTCACC 61.352 60.000 8.54 0.00 43.02 4.02
1469 1515 1.340658 CACGACATCGAGTTCACCAG 58.659 55.000 8.54 0.00 43.02 4.00
1473 1519 1.476891 GACATCGAGTTCACCAGCCTA 59.523 52.381 0.00 0.00 0.00 3.93
1515 1561 2.289547 CCACCAACTGTTCGACGAATTT 59.710 45.455 14.27 5.01 0.00 1.82
1526 1572 2.159476 TCGACGAATTTCCTCTACCACG 60.159 50.000 0.00 0.00 0.00 4.94
1544 1590 4.199310 CCACGTCTAACCCATGATTGATT 58.801 43.478 0.00 0.00 0.00 2.57
1555 1601 5.649395 ACCCATGATTGATTCTGTAACACTG 59.351 40.000 0.00 0.00 0.00 3.66
1556 1602 5.066893 CCCATGATTGATTCTGTAACACTGG 59.933 44.000 0.00 0.00 0.00 4.00
1582 1629 3.248266 GCTGTTTGGATGTTTGCAGATC 58.752 45.455 0.00 0.00 0.00 2.75
2014 2063 8.303876 GCACCATCCTATTTTTAGAAGAAAACA 58.696 33.333 0.00 0.00 31.88 2.83
2023 2072 6.613755 TTTTAGAAGAAAACAACTAGCGCT 57.386 33.333 17.26 17.26 0.00 5.92
2038 2423 2.364632 AGCGCTTAACACATTATGGCA 58.635 42.857 2.64 0.00 0.00 4.92
2062 2447 3.250323 CGCTGCGACGTCATCCTG 61.250 66.667 18.66 8.17 0.00 3.86
2064 2449 2.202797 CTGCGACGTCATCCTGGG 60.203 66.667 17.16 0.00 0.00 4.45
2069 2454 2.607750 ACGTCATCCTGGGCCTGT 60.608 61.111 4.53 0.00 0.00 4.00
2070 2455 2.185310 GACGTCATCCTGGGCCTGTT 62.185 60.000 11.55 0.00 0.00 3.16
2108 2493 2.186384 CTCAGAGCCGAGCCCTTG 59.814 66.667 0.00 0.00 0.00 3.61
2125 2510 0.035439 TTGGAAGGAATCTGACGGCC 60.035 55.000 0.00 0.00 0.00 6.13
2214 2600 3.369366 CCCCAAAAAGGCGCAAAAGATAT 60.369 43.478 10.83 0.00 35.39 1.63
2221 2607 6.995511 AAAGGCGCAAAAGATATACTTGTA 57.004 33.333 10.83 0.00 38.98 2.41
2265 2651 3.118112 CACAGATAATGGAGCTTGAGGGT 60.118 47.826 0.00 0.00 0.00 4.34
2326 2726 0.320421 CCGGCAAGAAACTTCTCGGA 60.320 55.000 10.90 0.00 41.85 4.55
2347 2747 4.020128 GGACACCCTACTCTGACTTGATTT 60.020 45.833 0.00 0.00 0.00 2.17
2355 2755 7.199766 CCTACTCTGACTTGATTTGCTACTAG 58.800 42.308 0.00 0.00 0.00 2.57
2365 2765 8.468399 ACTTGATTTGCTACTAGTAACTAGGAC 58.532 37.037 3.76 0.00 38.30 3.85
2366 2766 7.344095 TGATTTGCTACTAGTAACTAGGACC 57.656 40.000 3.76 0.00 38.30 4.46
2380 2780 2.240493 AGGACCGTTCAAACAGTCAG 57.760 50.000 10.50 0.00 37.92 3.51
2382 2782 1.865340 GGACCGTTCAAACAGTCAGTC 59.135 52.381 10.50 1.72 37.92 3.51
2383 2783 1.521423 GACCGTTCAAACAGTCAGTCG 59.479 52.381 4.72 0.00 36.56 4.18
2386 2786 0.586802 GTTCAAACAGTCAGTCGGCC 59.413 55.000 0.00 0.00 0.00 6.13
2388 2788 0.179234 TCAAACAGTCAGTCGGCCAA 59.821 50.000 2.24 0.00 0.00 4.52
2389 2789 1.202758 TCAAACAGTCAGTCGGCCAAT 60.203 47.619 2.24 0.00 0.00 3.16
2390 2790 1.069022 CAAACAGTCAGTCGGCCAATG 60.069 52.381 2.24 0.00 0.00 2.82
2391 2791 1.237285 AACAGTCAGTCGGCCAATGC 61.237 55.000 2.24 0.00 0.00 3.56
2408 2808 4.935808 CCAATGCGTACTTCTTTCCTAGTT 59.064 41.667 0.00 0.00 0.00 2.24
2421 2821 2.820178 TCCTAGTTGAGTGGATCTGCA 58.180 47.619 0.00 0.00 0.00 4.41
2466 2869 0.683973 AGCTCTGACCTGAGTTGTGG 59.316 55.000 5.93 0.00 36.51 4.17
2490 2893 2.027434 TAGGCCGGTAGCAGGGGTAT 62.027 60.000 1.90 0.00 46.50 2.73
2497 2914 2.249139 GGTAGCAGGGGTATCGAAGAT 58.751 52.381 0.00 0.00 45.12 2.40
2640 3068 3.457012 GGTACCTAACAGGATTAAGCCCA 59.543 47.826 6.03 0.00 37.67 5.36
2648 3076 2.165030 CAGGATTAAGCCCAGCACTTTG 59.835 50.000 6.03 0.00 0.00 2.77
2690 3118 5.182001 TGAAAGCTGAATAAAACTCCTGCTC 59.818 40.000 0.00 0.00 0.00 4.26
2701 3129 3.983533 ACTCCTGCTCCTACTATTCCT 57.016 47.619 0.00 0.00 0.00 3.36
2737 3165 1.185315 CAATGCTGGTTTGTAGGGGG 58.815 55.000 0.00 0.00 0.00 5.40
2745 3173 1.422402 GGTTTGTAGGGGGTGTTGAGA 59.578 52.381 0.00 0.00 0.00 3.27
2746 3174 2.041216 GGTTTGTAGGGGGTGTTGAGAT 59.959 50.000 0.00 0.00 0.00 2.75
2747 3175 3.081804 GTTTGTAGGGGGTGTTGAGATG 58.918 50.000 0.00 0.00 0.00 2.90
2748 3176 1.285280 TGTAGGGGGTGTTGAGATGG 58.715 55.000 0.00 0.00 0.00 3.51
2749 3177 1.203376 TGTAGGGGGTGTTGAGATGGA 60.203 52.381 0.00 0.00 0.00 3.41
2750 3178 1.913419 GTAGGGGGTGTTGAGATGGAA 59.087 52.381 0.00 0.00 0.00 3.53
2751 3179 1.455822 AGGGGGTGTTGAGATGGAAA 58.544 50.000 0.00 0.00 0.00 3.13
2752 3180 1.355720 AGGGGGTGTTGAGATGGAAAG 59.644 52.381 0.00 0.00 0.00 2.62
2753 3181 1.075536 GGGGGTGTTGAGATGGAAAGT 59.924 52.381 0.00 0.00 0.00 2.66
2754 3182 2.162681 GGGGTGTTGAGATGGAAAGTG 58.837 52.381 0.00 0.00 0.00 3.16
2755 3183 2.224769 GGGGTGTTGAGATGGAAAGTGA 60.225 50.000 0.00 0.00 0.00 3.41
2756 3184 3.077359 GGGTGTTGAGATGGAAAGTGAG 58.923 50.000 0.00 0.00 0.00 3.51
2757 3185 3.077359 GGTGTTGAGATGGAAAGTGAGG 58.923 50.000 0.00 0.00 0.00 3.86
2758 3186 3.077359 GTGTTGAGATGGAAAGTGAGGG 58.923 50.000 0.00 0.00 0.00 4.30
2759 3187 2.040278 TGTTGAGATGGAAAGTGAGGGG 59.960 50.000 0.00 0.00 0.00 4.79
2760 3188 0.620556 TGAGATGGAAAGTGAGGGGC 59.379 55.000 0.00 0.00 0.00 5.80
2761 3189 0.620556 GAGATGGAAAGTGAGGGGCA 59.379 55.000 0.00 0.00 0.00 5.36
2762 3190 0.622665 AGATGGAAAGTGAGGGGCAG 59.377 55.000 0.00 0.00 0.00 4.85
2763 3191 0.329596 GATGGAAAGTGAGGGGCAGT 59.670 55.000 0.00 0.00 0.00 4.40
2764 3192 0.779997 ATGGAAAGTGAGGGGCAGTT 59.220 50.000 0.00 0.00 41.88 3.16
2765 3193 1.440618 TGGAAAGTGAGGGGCAGTTA 58.559 50.000 0.00 0.00 39.20 2.24
2766 3194 1.777878 TGGAAAGTGAGGGGCAGTTAA 59.222 47.619 0.00 0.00 39.20 2.01
2767 3195 2.224769 TGGAAAGTGAGGGGCAGTTAAG 60.225 50.000 0.00 0.00 39.20 1.85
2768 3196 2.039879 GGAAAGTGAGGGGCAGTTAAGA 59.960 50.000 0.00 0.00 39.20 2.10
2769 3197 3.497942 GGAAAGTGAGGGGCAGTTAAGAA 60.498 47.826 0.00 0.00 39.20 2.52
2770 3198 3.876309 AAGTGAGGGGCAGTTAAGAAA 57.124 42.857 0.00 0.00 38.37 2.52
2771 3199 3.425162 AGTGAGGGGCAGTTAAGAAAG 57.575 47.619 0.00 0.00 0.00 2.62
2772 3200 2.979678 AGTGAGGGGCAGTTAAGAAAGA 59.020 45.455 0.00 0.00 0.00 2.52
2773 3201 3.589288 AGTGAGGGGCAGTTAAGAAAGAT 59.411 43.478 0.00 0.00 0.00 2.40
2774 3202 4.043435 AGTGAGGGGCAGTTAAGAAAGATT 59.957 41.667 0.00 0.00 0.00 2.40
2775 3203 5.250774 AGTGAGGGGCAGTTAAGAAAGATTA 59.749 40.000 0.00 0.00 0.00 1.75
2776 3204 5.586643 GTGAGGGGCAGTTAAGAAAGATTAG 59.413 44.000 0.00 0.00 0.00 1.73
2777 3205 5.250774 TGAGGGGCAGTTAAGAAAGATTAGT 59.749 40.000 0.00 0.00 0.00 2.24
2778 3206 6.442564 TGAGGGGCAGTTAAGAAAGATTAGTA 59.557 38.462 0.00 0.00 0.00 1.82
2779 3207 6.890293 AGGGGCAGTTAAGAAAGATTAGTAG 58.110 40.000 0.00 0.00 0.00 2.57
2780 3208 6.672657 AGGGGCAGTTAAGAAAGATTAGTAGA 59.327 38.462 0.00 0.00 0.00 2.59
2781 3209 7.348537 AGGGGCAGTTAAGAAAGATTAGTAGAT 59.651 37.037 0.00 0.00 0.00 1.98
2782 3210 7.993758 GGGGCAGTTAAGAAAGATTAGTAGATT 59.006 37.037 0.00 0.00 0.00 2.40
2783 3211 9.397280 GGGCAGTTAAGAAAGATTAGTAGATTT 57.603 33.333 0.00 0.00 0.00 2.17
2885 3313 3.509575 TCAGTTATCACAATTTGGGTGCC 59.490 43.478 0.00 0.00 36.22 5.01
2893 3322 2.038820 ACAATTTGGGTGCCCATTTCTG 59.961 45.455 11.20 8.77 46.64 3.02
2946 3375 9.150348 CAAGTATTTTGGTTTTGACAGTTCTTT 57.850 29.630 0.00 0.00 0.00 2.52
3092 3532 6.366332 GGTGTACTTTCTGACACTAGAACATG 59.634 42.308 0.00 0.00 44.39 3.21
3100 3540 7.962964 TCTGACACTAGAACATGTTTTAAGG 57.037 36.000 13.36 8.54 0.00 2.69
3165 3607 7.008021 ACAACATTTTTATGCCAGAATCCTT 57.992 32.000 0.00 0.00 0.00 3.36
3169 3611 7.955918 ACATTTTTATGCCAGAATCCTTATCC 58.044 34.615 0.00 0.00 0.00 2.59
3172 3614 5.560722 TTATGCCAGAATCCTTATCCGAA 57.439 39.130 0.00 0.00 0.00 4.30
3193 3635 0.390340 CTGATGAGTGGTGACCGTGG 60.390 60.000 0.00 0.00 0.00 4.94
3196 3638 0.832135 ATGAGTGGTGACCGTGGAGT 60.832 55.000 0.00 0.00 0.00 3.85
3199 3641 1.549170 GAGTGGTGACCGTGGAGTTAT 59.451 52.381 0.00 0.00 0.00 1.89
3201 3643 1.001633 GTGGTGACCGTGGAGTTATGT 59.998 52.381 0.00 0.00 0.00 2.29
3202 3644 2.231964 GTGGTGACCGTGGAGTTATGTA 59.768 50.000 0.00 0.00 0.00 2.29
3203 3645 2.231964 TGGTGACCGTGGAGTTATGTAC 59.768 50.000 0.00 0.00 0.00 2.90
3204 3646 2.231964 GGTGACCGTGGAGTTATGTACA 59.768 50.000 0.00 0.00 0.00 2.90
3205 3647 3.118884 GGTGACCGTGGAGTTATGTACAT 60.119 47.826 13.93 13.93 0.00 2.29
3267 3709 1.136891 GGTTATTTGCATCTGTGGCCC 59.863 52.381 0.00 0.00 0.00 5.80
3268 3710 1.136891 GTTATTTGCATCTGTGGCCCC 59.863 52.381 0.00 0.00 0.00 5.80
3269 3711 0.630673 TATTTGCATCTGTGGCCCCT 59.369 50.000 0.00 0.00 0.00 4.79
3270 3712 0.974010 ATTTGCATCTGTGGCCCCTG 60.974 55.000 0.00 0.00 0.00 4.45
3271 3713 3.588817 TTGCATCTGTGGCCCCTGG 62.589 63.158 0.00 0.00 0.00 4.45
3305 3747 2.869233 GCTGAGTGAAAACAGGCAAA 57.131 45.000 0.00 0.00 35.05 3.68
3306 3748 3.163630 GCTGAGTGAAAACAGGCAAAA 57.836 42.857 0.00 0.00 35.05 2.44
3307 3749 3.520569 GCTGAGTGAAAACAGGCAAAAA 58.479 40.909 0.00 0.00 35.05 1.94
3308 3750 3.306973 GCTGAGTGAAAACAGGCAAAAAC 59.693 43.478 0.00 0.00 35.05 2.43
3309 3751 4.493547 CTGAGTGAAAACAGGCAAAAACA 58.506 39.130 0.00 0.00 0.00 2.83
3310 3752 4.887748 TGAGTGAAAACAGGCAAAAACAA 58.112 34.783 0.00 0.00 0.00 2.83
3311 3753 5.300752 TGAGTGAAAACAGGCAAAAACAAA 58.699 33.333 0.00 0.00 0.00 2.83
3312 3754 5.760253 TGAGTGAAAACAGGCAAAAACAAAA 59.240 32.000 0.00 0.00 0.00 2.44
3313 3755 6.260936 TGAGTGAAAACAGGCAAAAACAAAAA 59.739 30.769 0.00 0.00 0.00 1.94
3378 3821 1.684248 CCAGCCTGGCTAAGCAGAAAT 60.684 52.381 22.90 0.00 36.40 2.17
3441 3885 5.297547 TGCAAAGTGTTGTTGTTTGGTTAA 58.702 33.333 0.00 0.00 37.06 2.01
3543 3989 4.765813 ATAACAGGCATACCGTAAACCT 57.234 40.909 0.00 0.00 42.76 3.50
3567 4029 5.539048 GAGTCTTACTCACAGGCAGTTAAA 58.461 41.667 2.22 0.00 44.45 1.52
3844 4311 1.589630 CTGTTGATCGTCCGGACCA 59.410 57.895 28.52 17.72 0.00 4.02
3849 4316 0.683179 TGATCGTCCGGACCATGACT 60.683 55.000 28.52 10.10 0.00 3.41
3861 4328 0.325933 CCATGACTCTCCAGGTGCAA 59.674 55.000 0.00 0.00 0.00 4.08
3863 4330 1.002888 CATGACTCTCCAGGTGCAACT 59.997 52.381 0.00 0.00 36.74 3.16
3911 4378 6.843069 AAAGAAAACAAATTGGTTCCATCG 57.157 33.333 0.00 0.00 0.00 3.84
3918 4385 4.511082 ACAAATTGGTTCCATCGCAAAAAG 59.489 37.500 0.00 0.00 0.00 2.27
3930 4397 3.953766 TCGCAAAAAGTTGAAACGCATA 58.046 36.364 0.00 0.00 36.83 3.14
3937 4404 7.616673 CAAAAAGTTGAAACGCATATGAAACA 58.383 30.769 6.97 0.00 36.83 2.83
4020 4487 0.963962 CAAAGGGTGCATGTGAGCTT 59.036 50.000 0.00 0.00 34.99 3.74
4059 4526 6.950979 CGTGTTCGCTAAAAACAAACATTTTT 59.049 30.769 2.20 2.20 42.80 1.94
4064 4531 8.359060 TCGCTAAAAACAAACATTTTTATGCT 57.641 26.923 15.20 0.00 41.09 3.79
4101 4568 3.634397 AGTAATGAGTGGTGACCATGG 57.366 47.619 7.94 11.19 35.28 3.66
4157 4632 3.124297 CGACTTGATTCTTTCTGCCAGTC 59.876 47.826 0.00 0.00 0.00 3.51
4165 4640 6.372659 TGATTCTTTCTGCCAGTCATAGAAAC 59.627 38.462 0.00 0.00 36.00 2.78
4206 4681 5.064198 GCTGTTATAGTTACGTTTGCCATGA 59.936 40.000 0.00 0.00 0.00 3.07
4229 4704 7.448420 TGAATGAAGAGAAGTTCATGAGACTT 58.552 34.615 17.61 17.61 44.72 3.01
4288 4763 3.727726 CCCCTTGTCACCATTTTTGTTC 58.272 45.455 0.00 0.00 0.00 3.18
4331 4807 3.464720 TGAGTGAATCAGGGAGAGAGT 57.535 47.619 0.00 0.00 32.77 3.24
4372 4850 1.618343 GTGGTCAATGGTCCCTTTTGG 59.382 52.381 0.00 0.00 39.97 3.28
4435 4913 3.742369 AGTGCAATTGTAAAGCAACATGC 59.258 39.130 7.40 10.61 45.68 4.06
4509 4987 9.947669 ACACTTACTAGCTACAGTAAATTATCG 57.052 33.333 9.75 1.63 39.79 2.92
4581 5059 7.992754 AGGATGCTTGGTTTATGATAATCTC 57.007 36.000 0.00 0.00 0.00 2.75
4614 5092 2.711009 TGCCCAACTAGCTATTGCCTAT 59.289 45.455 0.00 0.00 40.80 2.57
4628 5107 9.264719 AGCTATTGCCTATTTTTATCATTTTGC 57.735 29.630 0.00 0.00 40.80 3.68
4629 5108 8.216453 GCTATTGCCTATTTTTATCATTTTGCG 58.784 33.333 0.00 0.00 0.00 4.85
4705 5187 7.870509 AAGTTCAGCTCAGCATATTTAATCA 57.129 32.000 0.00 0.00 0.00 2.57
4740 5222 8.911918 TGAGCCTAATTAACAAACAAGAACTA 57.088 30.769 0.00 0.00 0.00 2.24
4778 5264 7.846644 ACATCTCTAAAAGCTCTTGAAGATG 57.153 36.000 17.85 17.85 36.49 2.90
4897 5383 2.388310 TTGTCTGACGTGTCAAACCA 57.612 45.000 4.16 0.00 39.39 3.67
4929 5415 6.202762 TCAATTGCCATGTATAACACGATCTC 59.797 38.462 0.00 0.00 0.00 2.75
4951 5437 2.206182 ATCAGCTGGCATGCAGGACA 62.206 55.000 21.36 6.77 34.99 4.02
5091 5577 2.760092 TCAATTTGCCCCACTCTATTGC 59.240 45.455 0.00 0.00 0.00 3.56
5100 5586 4.263243 GCCCCACTCTATTGCATCTTCTAT 60.263 45.833 0.00 0.00 0.00 1.98
5101 5587 5.486526 CCCCACTCTATTGCATCTTCTATC 58.513 45.833 0.00 0.00 0.00 2.08
5112 5598 7.750229 TTGCATCTTCTATCCAACATATTCC 57.250 36.000 0.00 0.00 0.00 3.01
5243 5729 3.699779 TGTCTCGATCTACTCACATGC 57.300 47.619 0.00 0.00 0.00 4.06
5356 5846 7.865706 ACTACATTGAACAAAACAGTCTTCT 57.134 32.000 0.00 0.00 0.00 2.85
5436 5926 5.172687 TGAGCCATGTTAATTGTGACCTA 57.827 39.130 0.00 0.00 0.00 3.08
5509 6000 1.809567 AACGGGTGTCGGGTAGTGTC 61.810 60.000 0.00 0.00 44.45 3.67
5682 6180 8.715191 TTGCCATTGGATGAATGTAAAAATAC 57.285 30.769 6.95 0.00 40.07 1.89
5793 6299 6.478512 AGACTCTGAAGGAATTACTCATCC 57.521 41.667 0.00 0.00 35.88 3.51
5955 6485 2.029020 AGCAAGCGTAATGTCTGAGTCA 60.029 45.455 0.00 0.00 0.00 3.41
5966 6500 7.488150 CGTAATGTCTGAGTCAACATTAGCTTA 59.512 37.037 25.11 13.57 44.64 3.09
5968 6502 5.724328 TGTCTGAGTCAACATTAGCTTAGG 58.276 41.667 0.00 0.00 0.00 2.69
6162 6731 4.196971 GGGAGCCGACACTAACAATAAAT 58.803 43.478 0.00 0.00 0.00 1.40
6216 6843 4.243007 TCGCATATGGCTGGATATATCG 57.757 45.455 4.56 0.00 41.67 2.92
6287 6914 3.833171 CGACAATTTGTTGACGCAAAAC 58.167 40.909 10.76 0.00 41.03 2.43
6289 6916 4.031201 CGACAATTTGTTGACGCAAAACTT 59.969 37.500 10.76 0.00 41.03 2.66
6291 6918 6.234723 ACAATTTGTTGACGCAAAACTTTT 57.765 29.167 0.00 0.00 41.03 2.27
6292 6919 6.303370 ACAATTTGTTGACGCAAAACTTTTC 58.697 32.000 0.00 0.00 41.03 2.29
6294 6921 5.508124 TTTGTTGACGCAAAACTTTTCTG 57.492 34.783 0.00 0.00 35.67 3.02
6302 6969 8.948853 TGACGCAAAACTTTTCTGAATTATAG 57.051 30.769 0.00 0.00 0.00 1.31
6353 7132 7.237982 TCTTCTTTAGATTGGTTCCATTCCAA 58.762 34.615 9.28 0.00 46.82 3.53
6354 7133 6.834168 TCTTTAGATTGGTTCCATTCCAAC 57.166 37.500 9.28 0.00 45.84 3.77
6408 7227 6.293004 AGTGAAGATTCCTCTCTAAACCTG 57.707 41.667 0.00 0.00 0.00 4.00
6418 7237 4.321601 CCTCTCTAAACCTGCGATCCTATG 60.322 50.000 0.00 0.00 0.00 2.23
6419 7238 3.574396 TCTCTAAACCTGCGATCCTATGG 59.426 47.826 0.00 0.00 0.00 2.74
6421 7240 4.476297 TCTAAACCTGCGATCCTATGGTA 58.524 43.478 0.00 0.00 0.00 3.25
6425 7244 3.511477 ACCTGCGATCCTATGGTAGAAT 58.489 45.455 0.00 0.00 0.00 2.40
6431 7299 7.923344 CCTGCGATCCTATGGTAGAATAATAAG 59.077 40.741 0.00 0.00 0.00 1.73
6508 7376 4.086457 TCTACTGTCTGCTGTCAATGGTA 58.914 43.478 0.00 0.00 0.00 3.25
6527 7396 0.698818 AACACAGGGATCCTTCACCC 59.301 55.000 12.58 0.00 45.88 4.61
6674 7546 1.680522 ATGCCGCCAGAGAGAACGAT 61.681 55.000 0.00 0.00 0.00 3.73
6686 7558 1.460504 AGAACGATCTCTACGGCACA 58.539 50.000 0.00 0.00 34.93 4.57
6720 7593 1.421410 GACGGTGCGTGACATGGATC 61.421 60.000 0.00 0.00 41.37 3.36
6751 7627 3.554692 GAGGAATGGTGCGTCGCG 61.555 66.667 13.38 0.00 0.00 5.87
6792 7673 2.361104 GCGCTTCAACCCCATGGA 60.361 61.111 15.22 0.00 34.81 3.41
6846 7729 3.342377 TTGCCGTCTCATAAACATGGA 57.658 42.857 0.00 0.00 0.00 3.41
6847 7730 3.558931 TGCCGTCTCATAAACATGGAT 57.441 42.857 0.00 0.00 0.00 3.41
6848 7731 3.205338 TGCCGTCTCATAAACATGGATG 58.795 45.455 0.00 0.00 0.00 3.51
6849 7732 2.031682 GCCGTCTCATAAACATGGATGC 60.032 50.000 0.00 0.00 0.00 3.91
6871 7754 7.004555 TGCTATACTCTCTTCCTCACAAAAA 57.995 36.000 0.00 0.00 0.00 1.94
6872 7755 7.624549 TGCTATACTCTCTTCCTCACAAAAAT 58.375 34.615 0.00 0.00 0.00 1.82
6873 7756 7.550551 TGCTATACTCTCTTCCTCACAAAAATG 59.449 37.037 0.00 0.00 0.00 2.32
6874 7757 7.550906 GCTATACTCTCTTCCTCACAAAAATGT 59.449 37.037 0.00 0.00 0.00 2.71
6881 7803 6.751157 TCTTCCTCACAAAAATGTAGACGTA 58.249 36.000 0.00 0.00 0.00 3.57
6914 7836 7.497909 CGTTGGGAGTACATTTATATGTCCTTT 59.502 37.037 1.77 0.00 43.81 3.11
6915 7837 9.185680 GTTGGGAGTACATTTATATGTCCTTTT 57.814 33.333 1.77 0.00 43.81 2.27
6916 7838 9.762381 TTGGGAGTACATTTATATGTCCTTTTT 57.238 29.630 1.77 0.00 43.81 1.94
6917 7839 9.403583 TGGGAGTACATTTATATGTCCTTTTTC 57.596 33.333 1.77 0.00 43.81 2.29
6918 7840 9.628500 GGGAGTACATTTATATGTCCTTTTTCT 57.372 33.333 1.77 0.00 43.81 2.52
6923 7845 8.446599 ACATTTATATGTCCTTTTTCTACGGG 57.553 34.615 0.00 0.00 41.07 5.28
6924 7846 8.269317 ACATTTATATGTCCTTTTTCTACGGGA 58.731 33.333 0.00 0.00 41.07 5.14
6925 7847 8.774586 CATTTATATGTCCTTTTTCTACGGGAG 58.225 37.037 0.00 0.00 0.00 4.30
6927 7849 3.672767 TGTCCTTTTTCTACGGGAGTC 57.327 47.619 0.00 0.00 45.66 3.36
6928 7850 3.236896 TGTCCTTTTTCTACGGGAGTCT 58.763 45.455 0.00 0.00 45.66 3.24
6929 7851 3.644738 TGTCCTTTTTCTACGGGAGTCTT 59.355 43.478 0.00 0.00 45.66 3.01
6930 7852 4.102054 TGTCCTTTTTCTACGGGAGTCTTT 59.898 41.667 0.00 0.00 45.66 2.52
6931 7853 5.061853 GTCCTTTTTCTACGGGAGTCTTTT 58.938 41.667 0.00 0.00 45.66 2.27
6932 7854 5.530171 GTCCTTTTTCTACGGGAGTCTTTTT 59.470 40.000 0.00 0.00 45.66 1.94
6933 7855 5.529800 TCCTTTTTCTACGGGAGTCTTTTTG 59.470 40.000 0.00 0.00 45.66 2.44
6934 7856 5.298527 CCTTTTTCTACGGGAGTCTTTTTGT 59.701 40.000 0.00 0.00 45.66 2.83
6935 7857 6.183360 CCTTTTTCTACGGGAGTCTTTTTGTT 60.183 38.462 0.00 0.00 45.66 2.83
6936 7858 6.762702 TTTTCTACGGGAGTCTTTTTGTTT 57.237 33.333 0.00 0.00 45.66 2.83
6937 7859 5.744666 TTCTACGGGAGTCTTTTTGTTTG 57.255 39.130 0.00 0.00 45.66 2.93
6938 7860 4.131596 TCTACGGGAGTCTTTTTGTTTGG 58.868 43.478 0.00 0.00 45.66 3.28
6939 7861 3.007473 ACGGGAGTCTTTTTGTTTGGA 57.993 42.857 0.00 0.00 40.62 3.53
6940 7862 2.949644 ACGGGAGTCTTTTTGTTTGGAG 59.050 45.455 0.00 0.00 40.62 3.86
6941 7863 2.949644 CGGGAGTCTTTTTGTTTGGAGT 59.050 45.455 0.00 0.00 0.00 3.85
6942 7864 4.131596 CGGGAGTCTTTTTGTTTGGAGTA 58.868 43.478 0.00 0.00 0.00 2.59
6943 7865 4.024302 CGGGAGTCTTTTTGTTTGGAGTAC 60.024 45.833 0.00 0.00 0.00 2.73
6944 7866 4.885325 GGGAGTCTTTTTGTTTGGAGTACA 59.115 41.667 0.00 0.00 0.00 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
92 101 1.005037 CAGTAGGTGCCGCACAGAA 60.005 57.895 24.43 6.70 35.86 3.02
110 119 1.519455 CCCGACCGAATCTCTGTGC 60.519 63.158 0.00 0.00 0.00 4.57
112 121 2.893398 GCCCGACCGAATCTCTGT 59.107 61.111 0.00 0.00 0.00 3.41
114 123 3.528370 CCGCCCGACCGAATCTCT 61.528 66.667 0.00 0.00 0.00 3.10
146 158 0.531200 GGTGTCGAAGGTTCCGAGAT 59.469 55.000 0.00 0.00 36.66 2.75
230 242 2.494591 GCTACGTCGGCGAAGTTCG 61.495 63.158 31.34 22.84 43.89 3.95
300 312 0.179062 GGTGCTTGCGATGATCCTCT 60.179 55.000 0.00 0.00 0.00 3.69
328 340 4.105727 CAGCCTGAGACGATGCTG 57.894 61.111 0.00 0.00 44.43 4.41
358 370 3.755628 CAGCGCCATGGCTTGCTT 61.756 61.111 29.80 16.33 42.53 3.91
394 406 2.278026 TCCTCGTTGATGATGTCGTG 57.722 50.000 0.00 0.00 0.00 4.35
401 413 4.307432 GAAGAACTGTTCCTCGTTGATGA 58.693 43.478 16.48 0.00 0.00 2.92
402 414 3.121944 CGAAGAACTGTTCCTCGTTGATG 59.878 47.826 25.60 4.76 38.47 3.07
403 415 3.318017 CGAAGAACTGTTCCTCGTTGAT 58.682 45.455 25.60 1.83 38.47 2.57
404 416 2.739292 CGAAGAACTGTTCCTCGTTGA 58.261 47.619 25.60 0.00 38.47 3.18
427 439 1.528309 CTCTCTCCGCCCTCCTCTC 60.528 68.421 0.00 0.00 0.00 3.20
439 451 0.106918 TCCCTCCTCTTCGCTCTCTC 60.107 60.000 0.00 0.00 0.00 3.20
470 491 4.327885 GCTTGTCCTCGCGATAGG 57.672 61.111 10.36 9.00 38.06 2.57
620 641 4.469227 AGTTCTCCTACTACTACTCGTCCA 59.531 45.833 0.00 0.00 0.00 4.02
775 813 1.300697 GATACAGCGCCGGGTTAGG 60.301 63.158 2.29 0.00 0.00 2.69
821 859 1.140816 CCGAATAGCCGCTTTAGAGC 58.859 55.000 0.00 0.00 45.65 4.09
822 860 1.140816 GCCGAATAGCCGCTTTAGAG 58.859 55.000 0.00 0.00 0.00 2.43
823 861 0.750850 AGCCGAATAGCCGCTTTAGA 59.249 50.000 0.00 0.00 0.00 2.10
824 862 1.583054 AAGCCGAATAGCCGCTTTAG 58.417 50.000 0.00 0.00 0.00 1.85
825 863 2.032680 AAAGCCGAATAGCCGCTTTA 57.967 45.000 0.00 0.00 35.68 1.85
826 864 2.032680 TAAAGCCGAATAGCCGCTTT 57.967 45.000 10.69 10.69 38.44 3.51
827 865 2.032680 TTAAAGCCGAATAGCCGCTT 57.967 45.000 0.00 0.00 0.00 4.68
828 866 1.940613 CTTTAAAGCCGAATAGCCGCT 59.059 47.619 1.47 0.00 0.00 5.52
829 867 1.937899 TCTTTAAAGCCGAATAGCCGC 59.062 47.619 10.51 0.00 0.00 6.53
830 868 4.609691 TTTCTTTAAAGCCGAATAGCCG 57.390 40.909 10.51 0.00 0.00 5.52
916 954 2.627737 GGTCCAGCTCGTCGTGTCT 61.628 63.158 0.00 0.00 0.00 3.41
1182 1228 2.269241 GAAGGGGAAGTGGCGGAG 59.731 66.667 0.00 0.00 0.00 4.63
1183 1229 3.327404 GGAAGGGGAAGTGGCGGA 61.327 66.667 0.00 0.00 0.00 5.54
1184 1230 2.821679 GAAGGAAGGGGAAGTGGCGG 62.822 65.000 0.00 0.00 0.00 6.13
1185 1231 1.377333 GAAGGAAGGGGAAGTGGCG 60.377 63.158 0.00 0.00 0.00 5.69
1186 1232 1.377333 CGAAGGAAGGGGAAGTGGC 60.377 63.158 0.00 0.00 0.00 5.01
1187 1233 1.377333 GCGAAGGAAGGGGAAGTGG 60.377 63.158 0.00 0.00 0.00 4.00
1188 1234 0.955919 GTGCGAAGGAAGGGGAAGTG 60.956 60.000 0.00 0.00 0.00 3.16
1189 1235 1.375326 GTGCGAAGGAAGGGGAAGT 59.625 57.895 0.00 0.00 0.00 3.01
1190 1236 1.377333 GGTGCGAAGGAAGGGGAAG 60.377 63.158 0.00 0.00 0.00 3.46
1191 1237 2.754375 GGTGCGAAGGAAGGGGAA 59.246 61.111 0.00 0.00 0.00 3.97
1233 1279 4.139420 CTGCGAAGAACAGCGGCG 62.139 66.667 0.51 0.51 35.87 6.46
1359 1405 3.491652 GCGCTGAAGTCGAAGCCC 61.492 66.667 0.00 0.00 35.98 5.19
1500 1546 3.662247 AGAGGAAATTCGTCGAACAGT 57.338 42.857 10.39 0.00 36.48 3.55
1515 1561 1.355381 TGGGTTAGACGTGGTAGAGGA 59.645 52.381 0.00 0.00 0.00 3.71
1526 1572 7.552687 TGTTACAGAATCAATCATGGGTTAGAC 59.447 37.037 0.00 0.00 0.00 2.59
1544 1590 2.371841 ACAGCAATCCCAGTGTTACAGA 59.628 45.455 0.00 0.00 0.00 3.41
1555 1601 3.328505 CAAACATCCAAACAGCAATCCC 58.671 45.455 0.00 0.00 0.00 3.85
1556 1602 2.738314 GCAAACATCCAAACAGCAATCC 59.262 45.455 0.00 0.00 0.00 3.01
1582 1629 1.260206 CAGGAATCGTCTCGTTCACG 58.740 55.000 0.00 0.00 41.45 4.35
1705 1752 5.337652 GCAGTAGGACAGAACCAAATCTACT 60.338 44.000 0.00 0.00 37.14 2.57
1972 2021 6.732862 AGGATGGTGCCAGTATCTTATATCTT 59.267 38.462 0.00 0.00 0.00 2.40
2014 2063 4.035208 GCCATAATGTGTTAAGCGCTAGTT 59.965 41.667 12.05 0.00 0.00 2.24
2051 2436 2.185310 AACAGGCCCAGGATGACGTC 62.185 60.000 9.11 9.11 39.69 4.34
2108 2493 1.153147 GGGCCGTCAGATTCCTTCC 60.153 63.158 0.00 0.00 0.00 3.46
2132 2517 2.150837 GGTGTCTACGAAGCGACGC 61.151 63.158 13.03 13.03 39.78 5.19
2140 2525 1.324435 CGTTCGTATCGGTGTCTACGA 59.676 52.381 1.06 1.06 45.62 3.43
2302 2694 2.458006 GAAGTTTCTTGCCGGTGCCG 62.458 60.000 1.90 3.25 36.33 5.69
2317 2709 1.355043 AGAGTAGGGTGTCCGAGAAGT 59.645 52.381 0.00 0.00 38.33 3.01
2326 2726 4.804261 GCAAATCAAGTCAGAGTAGGGTGT 60.804 45.833 0.00 0.00 0.00 4.16
2347 2747 4.494091 ACGGTCCTAGTTACTAGTAGCA 57.506 45.455 17.72 4.58 32.62 3.49
2355 2755 4.625028 ACTGTTTGAACGGTCCTAGTTAC 58.375 43.478 0.00 0.00 44.94 2.50
2365 2765 0.859232 CCGACTGACTGTTTGAACGG 59.141 55.000 1.25 1.25 41.10 4.44
2366 2766 0.232303 GCCGACTGACTGTTTGAACG 59.768 55.000 0.00 0.00 0.00 3.95
2380 2780 0.739813 AGAAGTACGCATTGGCCGAC 60.740 55.000 0.00 0.00 36.38 4.79
2382 2782 0.802494 AAAGAAGTACGCATTGGCCG 59.198 50.000 0.00 0.00 36.38 6.13
2383 2783 1.132453 GGAAAGAAGTACGCATTGGCC 59.868 52.381 0.00 0.00 36.38 5.36
2386 2786 5.637810 TCAACTAGGAAAGAAGTACGCATTG 59.362 40.000 0.00 0.00 0.00 2.82
2388 2788 5.047235 ACTCAACTAGGAAAGAAGTACGCAT 60.047 40.000 0.00 0.00 0.00 4.73
2389 2789 4.280174 ACTCAACTAGGAAAGAAGTACGCA 59.720 41.667 0.00 0.00 0.00 5.24
2390 2790 4.621886 CACTCAACTAGGAAAGAAGTACGC 59.378 45.833 0.00 0.00 0.00 4.42
2391 2791 5.048224 TCCACTCAACTAGGAAAGAAGTACG 60.048 44.000 0.00 0.00 0.00 3.67
2421 2821 4.846367 TGGTAGAATATTGGGCTCTGCTAT 59.154 41.667 0.00 0.00 0.00 2.97
2429 2829 3.555966 AGCTTGTGGTAGAATATTGGGC 58.444 45.455 0.00 0.00 0.00 5.36
2436 2836 3.055530 CAGGTCAGAGCTTGTGGTAGAAT 60.056 47.826 0.00 0.00 0.00 2.40
2437 2837 2.300152 CAGGTCAGAGCTTGTGGTAGAA 59.700 50.000 0.00 0.00 0.00 2.10
2490 2893 3.612795 TCCCTAATCCCTGATCTTCGA 57.387 47.619 0.00 0.00 0.00 3.71
2497 2914 4.641868 AGTATGGTTTCCCTAATCCCTGA 58.358 43.478 0.00 0.00 0.00 3.86
2553 2970 6.726299 CCTACAGGACCATATAAAGGATCTCA 59.274 42.308 0.00 0.00 37.39 3.27
2554 2971 6.351456 GCCTACAGGACCATATAAAGGATCTC 60.351 46.154 0.00 0.00 37.39 2.75
2654 3082 8.970691 TTATTCAGCTTTCAAAGTCAATTAGC 57.029 30.769 0.00 0.00 0.00 3.09
2701 3129 6.812656 CCAGCATTGCTTTATTTGTTACATGA 59.187 34.615 8.83 0.00 36.40 3.07
2737 3165 3.077359 CCCTCACTTTCCATCTCAACAC 58.923 50.000 0.00 0.00 0.00 3.32
2745 3173 0.779997 AACTGCCCCTCACTTTCCAT 59.220 50.000 0.00 0.00 0.00 3.41
2746 3174 1.440618 TAACTGCCCCTCACTTTCCA 58.559 50.000 0.00 0.00 0.00 3.53
2747 3175 2.039879 TCTTAACTGCCCCTCACTTTCC 59.960 50.000 0.00 0.00 0.00 3.13
2748 3176 3.418684 TCTTAACTGCCCCTCACTTTC 57.581 47.619 0.00 0.00 0.00 2.62
2749 3177 3.876309 TTCTTAACTGCCCCTCACTTT 57.124 42.857 0.00 0.00 0.00 2.66
2750 3178 3.394606 TCTTTCTTAACTGCCCCTCACTT 59.605 43.478 0.00 0.00 0.00 3.16
2751 3179 2.979678 TCTTTCTTAACTGCCCCTCACT 59.020 45.455 0.00 0.00 0.00 3.41
2752 3180 3.418684 TCTTTCTTAACTGCCCCTCAC 57.581 47.619 0.00 0.00 0.00 3.51
2753 3181 4.657814 AATCTTTCTTAACTGCCCCTCA 57.342 40.909 0.00 0.00 0.00 3.86
2754 3182 5.746284 ACTAATCTTTCTTAACTGCCCCTC 58.254 41.667 0.00 0.00 0.00 4.30
2755 3183 5.780958 ACTAATCTTTCTTAACTGCCCCT 57.219 39.130 0.00 0.00 0.00 4.79
2756 3184 6.885922 TCTACTAATCTTTCTTAACTGCCCC 58.114 40.000 0.00 0.00 0.00 5.80
2757 3185 8.966069 AATCTACTAATCTTTCTTAACTGCCC 57.034 34.615 0.00 0.00 0.00 5.36
2774 3202 9.627123 CCCTCATTTTCCATACAAAATCTACTA 57.373 33.333 0.00 0.00 34.37 1.82
2775 3203 7.561356 CCCCTCATTTTCCATACAAAATCTACT 59.439 37.037 0.00 0.00 34.37 2.57
2776 3204 7.684428 GCCCCTCATTTTCCATACAAAATCTAC 60.684 40.741 0.00 0.00 34.37 2.59
2777 3205 6.323739 GCCCCTCATTTTCCATACAAAATCTA 59.676 38.462 0.00 0.00 34.37 1.98
2778 3206 5.129320 GCCCCTCATTTTCCATACAAAATCT 59.871 40.000 0.00 0.00 34.37 2.40
2779 3207 5.104982 TGCCCCTCATTTTCCATACAAAATC 60.105 40.000 0.00 0.00 34.37 2.17
2780 3208 4.782156 TGCCCCTCATTTTCCATACAAAAT 59.218 37.500 0.00 0.00 36.57 1.82
2781 3209 4.163427 TGCCCCTCATTTTCCATACAAAA 58.837 39.130 0.00 0.00 0.00 2.44
2782 3210 3.768757 CTGCCCCTCATTTTCCATACAAA 59.231 43.478 0.00 0.00 0.00 2.83
2783 3211 3.245586 ACTGCCCCTCATTTTCCATACAA 60.246 43.478 0.00 0.00 0.00 2.41
2784 3212 2.311542 ACTGCCCCTCATTTTCCATACA 59.688 45.455 0.00 0.00 0.00 2.29
2785 3213 3.018423 ACTGCCCCTCATTTTCCATAC 57.982 47.619 0.00 0.00 0.00 2.39
2786 3214 3.756082 AACTGCCCCTCATTTTCCATA 57.244 42.857 0.00 0.00 0.00 2.74
2827 3255 7.331687 CCAGAATGTTTTGGTCCAATTTCATAC 59.668 37.037 4.80 0.00 0.00 2.39
3092 3532 9.797556 ACCTATCGCAAATAAAATCCTTAAAAC 57.202 29.630 0.00 0.00 0.00 2.43
3126 3566 8.715191 AAAAATGTTGTTTTCAGTTGCTATCA 57.285 26.923 0.00 0.00 0.00 2.15
3142 3582 9.252962 GATAAGGATTCTGGCATAAAAATGTTG 57.747 33.333 0.00 0.00 0.00 3.33
3145 3585 7.040478 TCGGATAAGGATTCTGGCATAAAAATG 60.040 37.037 0.00 0.00 0.00 2.32
3146 3586 7.004086 TCGGATAAGGATTCTGGCATAAAAAT 58.996 34.615 0.00 0.00 0.00 1.82
3147 3587 6.361433 TCGGATAAGGATTCTGGCATAAAAA 58.639 36.000 0.00 0.00 0.00 1.94
3165 3607 3.767131 TCACCACTCATCAGTTTCGGATA 59.233 43.478 0.00 0.00 0.00 2.59
3169 3611 2.069273 GGTCACCACTCATCAGTTTCG 58.931 52.381 0.00 0.00 0.00 3.46
3172 3614 1.048601 ACGGTCACCACTCATCAGTT 58.951 50.000 0.00 0.00 0.00 3.16
3193 3635 6.017934 CACTATGCAACCCATGTACATAACTC 60.018 42.308 8.32 0.00 35.34 3.01
3196 3638 5.820423 GTCACTATGCAACCCATGTACATAA 59.180 40.000 8.32 0.00 35.34 1.90
3199 3641 3.605634 GTCACTATGCAACCCATGTACA 58.394 45.455 0.00 0.00 35.34 2.90
3201 3643 2.899976 CGTCACTATGCAACCCATGTA 58.100 47.619 0.00 0.00 35.34 2.29
3202 3644 1.737838 CGTCACTATGCAACCCATGT 58.262 50.000 0.00 0.00 35.34 3.21
3203 3645 0.378257 GCGTCACTATGCAACCCATG 59.622 55.000 0.00 0.00 37.58 3.66
3204 3646 0.035534 TGCGTCACTATGCAACCCAT 60.036 50.000 0.00 0.00 44.62 4.00
3205 3647 1.373059 TGCGTCACTATGCAACCCA 59.627 52.632 0.00 0.00 44.62 4.51
3280 3722 0.183492 TGTTTTCACTCAGCCTGGCT 59.817 50.000 17.22 17.22 40.77 4.75
3352 3795 3.579451 TTAGCCAGGCTGGAGGGGT 62.579 63.158 37.07 17.80 40.96 4.95
3378 3821 1.134877 CAACCAAACACCATGTGTGCA 60.135 47.619 12.53 0.00 46.79 4.57
3453 3897 5.502079 TCCAACAAGAAGTTAACAGACCAA 58.498 37.500 8.61 0.00 38.74 3.67
3466 3910 3.644966 AACTCACCACTCCAACAAGAA 57.355 42.857 0.00 0.00 0.00 2.52
3767 4234 3.603532 GTTGCTCACCAGATCAAGATCA 58.396 45.455 12.21 0.00 40.22 2.92
3844 4311 1.002888 CAGTTGCACCTGGAGAGTCAT 59.997 52.381 2.78 0.00 0.00 3.06
3861 4328 1.134098 CAGACCTCCACAAACACCAGT 60.134 52.381 0.00 0.00 0.00 4.00
3863 4330 0.182537 CCAGACCTCCACAAACACCA 59.817 55.000 0.00 0.00 0.00 4.17
3891 4358 4.054671 TGCGATGGAACCAATTTGTTTTC 58.945 39.130 0.00 0.00 0.00 2.29
3894 4361 3.742433 TTGCGATGGAACCAATTTGTT 57.258 38.095 0.00 0.00 0.00 2.83
3896 4363 4.511082 ACTTTTTGCGATGGAACCAATTTG 59.489 37.500 0.00 0.00 0.00 2.32
3898 4365 4.335400 ACTTTTTGCGATGGAACCAATT 57.665 36.364 0.00 0.00 0.00 2.32
3899 4366 4.057432 CAACTTTTTGCGATGGAACCAAT 58.943 39.130 0.00 0.00 0.00 3.16
3900 4367 3.131223 TCAACTTTTTGCGATGGAACCAA 59.869 39.130 0.00 0.00 32.17 3.67
3901 4368 2.690497 TCAACTTTTTGCGATGGAACCA 59.310 40.909 0.00 0.00 32.17 3.67
3902 4369 3.363341 TCAACTTTTTGCGATGGAACC 57.637 42.857 0.00 0.00 32.17 3.62
3903 4370 4.317069 CGTTTCAACTTTTTGCGATGGAAC 60.317 41.667 0.00 0.00 32.17 3.62
3911 4378 5.820926 TCATATGCGTTTCAACTTTTTGC 57.179 34.783 0.00 0.00 32.17 3.68
3918 4385 4.973051 TGTGTGTTTCATATGCGTTTCAAC 59.027 37.500 0.00 0.00 0.00 3.18
3937 4404 3.815856 TGCCAACAAACATTGATGTGT 57.184 38.095 0.00 0.00 41.61 3.72
3986 4453 5.339990 CACCCTTTGCTACAATAAAATCCG 58.660 41.667 0.00 0.00 0.00 4.18
4035 4502 9.909043 ATAAAAATGTTTGTTTTTAGCGAACAC 57.091 25.926 9.52 0.00 43.07 3.32
4084 4551 1.988107 ACTCCATGGTCACCACTCATT 59.012 47.619 12.58 0.00 35.80 2.57
4101 4568 4.202245 TCACCTATGCAACCTGTAACTC 57.798 45.455 0.00 0.00 0.00 3.01
4206 4681 7.222872 ACAAGTCTCATGAACTTCTCTTCATT 58.777 34.615 15.82 0.00 38.57 2.57
4229 4704 2.401583 AACCAGCGATCATGCTTACA 57.598 45.000 0.00 0.00 44.46 2.41
4288 4763 1.078426 GGTGAACCAGGATCCACCG 60.078 63.158 15.82 2.65 44.74 4.94
4319 4795 3.563261 CCTTTCTCTCACTCTCTCCCTGA 60.563 52.174 0.00 0.00 0.00 3.86
4331 4807 4.467795 CACTCTACCATTCCCTTTCTCTCA 59.532 45.833 0.00 0.00 0.00 3.27
4372 4850 4.279659 CAGAAACTGAGGTAAAAACACGC 58.720 43.478 0.00 0.00 32.44 5.34
4435 4913 5.048224 ACTCAACTTGAAGCAATGGAAGATG 60.048 40.000 0.00 0.00 0.00 2.90
4614 5092 6.284459 AGGTTGGTTCGCAAAATGATAAAAA 58.716 32.000 0.00 0.00 0.00 1.94
4628 5107 2.353579 ACGAAAACAAGAGGTTGGTTCG 59.646 45.455 17.50 17.50 43.10 3.95
4629 5108 3.488553 CCACGAAAACAAGAGGTTGGTTC 60.489 47.826 0.00 0.00 43.10 3.62
4694 5176 8.068893 GCTCAGTTTGCCATTGATTAAATATG 57.931 34.615 0.00 0.00 0.00 1.78
4778 5264 9.250624 ACGAGAAGCATAACAGAAGTAATAATC 57.749 33.333 0.00 0.00 0.00 1.75
4787 5273 2.301870 ACCCACGAGAAGCATAACAGAA 59.698 45.455 0.00 0.00 0.00 3.02
4795 5281 2.301870 ACTATTTCACCCACGAGAAGCA 59.698 45.455 0.00 0.00 0.00 3.91
4796 5282 2.973945 ACTATTTCACCCACGAGAAGC 58.026 47.619 0.00 0.00 0.00 3.86
4798 5284 5.244402 TCAACTACTATTTCACCCACGAGAA 59.756 40.000 0.00 0.00 0.00 2.87
4848 5334 9.153479 AGTGAGCCTTCTAGAAGTTAATATGAT 57.847 33.333 26.83 11.54 36.72 2.45
4849 5335 8.540507 AGTGAGCCTTCTAGAAGTTAATATGA 57.459 34.615 26.83 4.07 36.72 2.15
4850 5336 9.255304 GAAGTGAGCCTTCTAGAAGTTAATATG 57.745 37.037 26.83 13.35 45.19 1.78
4897 5383 7.927629 GTGTTATACATGGCAATTGATGGATTT 59.072 33.333 10.34 0.00 0.00 2.17
4929 5415 0.952280 CCTGCATGCCAGCTGATAAG 59.048 55.000 17.39 1.79 40.36 1.73
4951 5437 3.513119 TCTTTCTACAGTGATCTGCTGCT 59.487 43.478 14.77 7.52 44.77 4.24
5243 5729 2.664825 TTTTTCCCTTGGGCATCCG 58.335 52.632 0.00 0.00 35.24 4.18
5356 5846 9.461312 ACAGGCAGAAGATAATACATAAACAAA 57.539 29.630 0.00 0.00 0.00 2.83
5368 5858 5.336690 GCATTGGAAAACAGGCAGAAGATAA 60.337 40.000 0.00 0.00 33.13 1.75
5371 5861 2.297033 GCATTGGAAAACAGGCAGAAGA 59.703 45.455 0.00 0.00 33.13 2.87
5593 6084 7.888021 ACATCATGTTACTATTTGTTTCCTCCA 59.112 33.333 0.00 0.00 0.00 3.86
5682 6180 4.576463 GCTTCCTCCTGTGGTAATACATTG 59.424 45.833 0.00 0.00 0.00 2.82
5753 6259 8.128322 TCAGAGTCTTATCTTTTCAAGCTAGT 57.872 34.615 0.00 0.00 0.00 2.57
5770 6276 6.098124 CAGGATGAGTAATTCCTTCAGAGTCT 59.902 42.308 0.00 0.00 40.44 3.24
5787 6293 3.834489 ATCAGGTAAGCACAGGATGAG 57.166 47.619 0.00 0.00 39.69 2.90
5793 6299 3.438087 CACCTTGAATCAGGTAAGCACAG 59.562 47.826 4.51 0.00 46.27 3.66
5842 6371 4.100035 TCATCTATGCCTGAAGTCGACAAT 59.900 41.667 19.50 5.89 0.00 2.71
5955 6485 6.264067 GGATTTCATCTGCCTAAGCTAATGTT 59.736 38.462 0.00 0.00 40.80 2.71
5966 6500 2.245546 TCCCAATGGATTTCATCTGCCT 59.754 45.455 0.00 0.00 35.03 4.75
6009 6543 9.872721 CTGCAGATGAACATATATGACTCTATT 57.127 33.333 19.63 1.78 0.00 1.73
6237 6864 4.693566 CCATTCGCTTACCTAAGTTGACAA 59.306 41.667 0.00 0.00 35.75 3.18
6240 6867 3.267483 GCCATTCGCTTACCTAAGTTGA 58.733 45.455 0.00 0.00 35.75 3.18
6282 6909 9.090692 CATGGCCTATAATTCAGAAAAGTTTTG 57.909 33.333 5.36 0.00 0.00 2.44
6283 6910 7.765819 GCATGGCCTATAATTCAGAAAAGTTTT 59.234 33.333 3.32 0.00 0.00 2.43
6286 6913 5.893255 TGCATGGCCTATAATTCAGAAAAGT 59.107 36.000 3.32 0.00 0.00 2.66
6287 6914 6.395426 TGCATGGCCTATAATTCAGAAAAG 57.605 37.500 3.32 0.00 0.00 2.27
6289 6916 4.828939 CCTGCATGGCCTATAATTCAGAAA 59.171 41.667 3.32 0.00 0.00 2.52
6291 6918 3.245016 CCCTGCATGGCCTATAATTCAGA 60.245 47.826 3.32 0.00 0.00 3.27
6292 6919 3.087031 CCCTGCATGGCCTATAATTCAG 58.913 50.000 3.32 0.00 0.00 3.02
6294 6921 3.439857 TCCCTGCATGGCCTATAATTC 57.560 47.619 3.32 0.00 0.00 2.17
6302 6969 1.076485 AAGACATCCCTGCATGGCC 60.076 57.895 2.62 0.00 31.19 5.36
6342 7121 7.214467 TCTTCATAAACAGTTGGAATGGAAC 57.786 36.000 0.00 0.00 0.00 3.62
6353 7132 6.702329 AGAGTTCCGAATCTTCATAAACAGT 58.298 36.000 0.00 0.00 0.00 3.55
6354 7133 7.602517 AAGAGTTCCGAATCTTCATAAACAG 57.397 36.000 0.00 0.00 29.80 3.16
6408 7227 9.733219 GTACTTATTATTCTACCATAGGATCGC 57.267 37.037 0.00 0.00 0.00 4.58
6442 7310 3.696051 GCCCTGTCTATTCTTGCATCAAA 59.304 43.478 0.00 0.00 0.00 2.69
6444 7312 2.421952 GGCCCTGTCTATTCTTGCATCA 60.422 50.000 0.00 0.00 0.00 3.07
6478 7346 7.089770 TGACAGCAGACAGTAGAGTTATAAG 57.910 40.000 0.00 0.00 0.00 1.73
6508 7376 0.698818 GGGTGAAGGATCCCTGTGTT 59.301 55.000 8.55 0.00 40.48 3.32
6527 7396 1.512230 CCATGGGGTTGAACATGCG 59.488 57.895 2.85 0.00 42.31 4.73
6633 7504 3.007831 TGCCGATGCCACAGATAATATCA 59.992 43.478 2.84 0.00 36.33 2.15
6674 7546 0.826256 ACCACTGTGTGCCGTAGAGA 60.826 55.000 7.08 0.00 31.34 3.10
6686 7558 2.826702 GTCCCCGTCAACCACTGT 59.173 61.111 0.00 0.00 0.00 3.55
6707 7579 0.597637 CTACCCGATCCATGTCACGC 60.598 60.000 0.00 0.00 0.00 5.34
6720 7593 1.033746 TTCCTCCGTACAGCTACCCG 61.034 60.000 0.00 0.00 0.00 5.28
6751 7627 2.232298 CTCGTGGTCCCTTCTCTGGC 62.232 65.000 0.00 0.00 0.00 4.85
6776 7657 0.457035 CAATCCATGGGGTTGAAGCG 59.543 55.000 19.90 0.00 34.93 4.68
6846 7729 6.798427 TTTGTGAGGAAGAGAGTATAGCAT 57.202 37.500 0.00 0.00 0.00 3.79
6847 7730 6.605471 TTTTGTGAGGAAGAGAGTATAGCA 57.395 37.500 0.00 0.00 0.00 3.49
6848 7731 7.550906 ACATTTTTGTGAGGAAGAGAGTATAGC 59.449 37.037 0.00 0.00 0.00 2.97
6881 7803 4.553330 AATGTACTCCCAACGTCAGAAT 57.447 40.909 0.00 0.00 0.00 2.40
6914 7836 5.066764 CCAAACAAAAAGACTCCCGTAGAAA 59.933 40.000 0.00 0.00 0.00 2.52
6915 7837 4.577283 CCAAACAAAAAGACTCCCGTAGAA 59.423 41.667 0.00 0.00 0.00 2.10
6916 7838 4.131596 CCAAACAAAAAGACTCCCGTAGA 58.868 43.478 0.00 0.00 0.00 2.59
6917 7839 4.131596 TCCAAACAAAAAGACTCCCGTAG 58.868 43.478 0.00 0.00 0.00 3.51
6918 7840 4.131596 CTCCAAACAAAAAGACTCCCGTA 58.868 43.478 0.00 0.00 0.00 4.02
6919 7841 2.949644 CTCCAAACAAAAAGACTCCCGT 59.050 45.455 0.00 0.00 0.00 5.28
6920 7842 2.949644 ACTCCAAACAAAAAGACTCCCG 59.050 45.455 0.00 0.00 0.00 5.14
6921 7843 4.885325 TGTACTCCAAACAAAAAGACTCCC 59.115 41.667 0.00 0.00 0.00 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.