Multiple sequence alignment - TraesCS5D01G066400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G066400 chr5D 100.000 2554 0 0 1 2554 61815086 61812533 0.000000e+00 4717.0
1 TraesCS5D01G066400 chr5D 91.329 888 69 8 1 883 74135465 74136349 0.000000e+00 1206.0
2 TraesCS5D01G066400 chr5D 83.186 565 67 12 997 1555 61792665 61792123 2.280000e-135 492.0
3 TraesCS5D01G066400 chr5D 81.756 581 67 20 1000 1563 61838352 61837794 1.390000e-122 449.0
4 TraesCS5D01G066400 chr5D 83.550 462 55 15 1000 1447 62131776 62131322 1.830000e-111 412.0
5 TraesCS5D01G066400 chr5D 83.058 242 31 8 1744 1979 478205127 478204890 7.160000e-51 211.0
6 TraesCS5D01G066400 chr3D 94.925 867 43 1 1 866 520290372 520291238 0.000000e+00 1356.0
7 TraesCS5D01G066400 chr3D 91.867 873 57 8 4 869 567244459 567243594 0.000000e+00 1206.0
8 TraesCS5D01G066400 chr5A 93.864 880 49 5 1 877 685532358 685533235 0.000000e+00 1321.0
9 TraesCS5D01G066400 chr5A 88.261 690 43 15 900 1556 51792634 51791950 0.000000e+00 791.0
10 TraesCS5D01G066400 chr5A 81.770 565 87 9 997 1555 51748451 51747897 2.320000e-125 459.0
11 TraesCS5D01G066400 chr5A 95.455 66 3 0 926 991 51748572 51748507 3.480000e-19 106.0
12 TraesCS5D01G066400 chr6D 93.685 871 47 7 4 869 350238922 350238055 0.000000e+00 1297.0
13 TraesCS5D01G066400 chr6D 74.194 341 62 19 1714 2040 91493443 91493115 4.460000e-23 119.0
14 TraesCS5D01G066400 chr6D 93.333 60 2 1 1565 1622 80150288 80150347 1.260000e-13 87.9
15 TraesCS5D01G066400 chr7A 91.438 876 63 9 1 869 48070187 48071057 0.000000e+00 1192.0
16 TraesCS5D01G066400 chr7D 91.230 878 67 9 4 876 51797163 51796291 0.000000e+00 1186.0
17 TraesCS5D01G066400 chr7D 77.994 309 36 19 1722 2023 540233010 540233293 5.650000e-37 165.0
18 TraesCS5D01G066400 chr7D 93.220 59 3 1 1565 1622 628134496 628134554 4.530000e-13 86.1
19 TraesCS5D01G066400 chr6A 91.455 866 66 7 6 866 149386352 149387214 0.000000e+00 1182.0
20 TraesCS5D01G066400 chr6A 76.534 277 45 14 1710 1979 552935568 552935305 1.590000e-27 134.0
21 TraesCS5D01G066400 chr6A 94.915 59 2 1 1565 1622 23493151 23493093 9.730000e-15 91.6
22 TraesCS5D01G066400 chr2D 91.514 872 55 10 1 860 90306982 90307846 0.000000e+00 1182.0
23 TraesCS5D01G066400 chrUn 89.714 700 40 13 887 1556 65980022 65979325 0.000000e+00 865.0
24 TraesCS5D01G066400 chrUn 81.722 569 73 10 997 1555 65969062 65968515 1.800000e-121 446.0
25 TraesCS5D01G066400 chrUn 81.195 569 72 21 997 1545 337950295 337950848 2.350000e-115 425.0
26 TraesCS5D01G066400 chrUn 81.955 532 69 18 1029 1548 337959402 337958886 2.350000e-115 425.0
27 TraesCS5D01G066400 chrUn 81.195 569 72 21 997 1545 427501094 427501647 2.350000e-115 425.0
28 TraesCS5D01G066400 chrUn 79.553 313 45 11 2233 2544 65976335 65976041 3.330000e-49 206.0
29 TraesCS5D01G066400 chrUn 90.526 95 7 2 900 994 65969198 65969106 9.590000e-25 124.0
30 TraesCS5D01G066400 chr4D 82.075 318 41 11 1744 2053 415883190 415882881 9.070000e-65 257.0
31 TraesCS5D01G066400 chr4D 91.667 60 3 1 1565 1622 417414958 417415017 5.860000e-12 82.4
32 TraesCS5D01G066400 chr3A 81.728 301 33 11 1670 1962 575608905 575609191 5.500000e-57 231.0
33 TraesCS5D01G066400 chr6B 82.963 270 30 8 1774 2038 210613126 210612868 1.980000e-56 230.0
34 TraesCS5D01G066400 chr6B 94.118 34 2 0 2326 2359 707157273 707157240 5.000000e-03 52.8
35 TraesCS5D01G066400 chr7B 79.193 322 47 12 1668 1983 594901592 594901899 3.330000e-49 206.0
36 TraesCS5D01G066400 chr7B 74.916 299 59 12 1673 1966 64723672 64723959 3.450000e-24 122.0
37 TraesCS5D01G066400 chr1A 82.390 159 25 3 1673 1829 430238071 430237914 4.430000e-28 135.0
38 TraesCS5D01G066400 chr1D 74.157 356 67 22 1714 2054 467613853 467613508 9.590000e-25 124.0
39 TraesCS5D01G066400 chr4A 93.651 63 2 2 1562 1622 600463631 600463569 2.710000e-15 93.5
40 TraesCS5D01G066400 chr2B 95.000 60 1 1 1565 1622 646130297 646130238 2.710000e-15 93.5
41 TraesCS5D01G066400 chr2A 96.429 56 2 0 1565 1620 565263761 565263706 2.710000e-15 93.5
42 TraesCS5D01G066400 chr3B 93.333 60 2 1 1565 1622 23954462 23954403 1.260000e-13 87.9
43 TraesCS5D01G066400 chr3B 90.476 63 5 1 1559 1620 729947544 729947482 5.860000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G066400 chr5D 61812533 61815086 2553 True 4717.0 4717 100.0000 1 2554 1 chr5D.!!$R2 2553
1 TraesCS5D01G066400 chr5D 74135465 74136349 884 False 1206.0 1206 91.3290 1 883 1 chr5D.!!$F1 882
2 TraesCS5D01G066400 chr5D 61792123 61792665 542 True 492.0 492 83.1860 997 1555 1 chr5D.!!$R1 558
3 TraesCS5D01G066400 chr5D 61837794 61838352 558 True 449.0 449 81.7560 1000 1563 1 chr5D.!!$R3 563
4 TraesCS5D01G066400 chr3D 520290372 520291238 866 False 1356.0 1356 94.9250 1 866 1 chr3D.!!$F1 865
5 TraesCS5D01G066400 chr3D 567243594 567244459 865 True 1206.0 1206 91.8670 4 869 1 chr3D.!!$R1 865
6 TraesCS5D01G066400 chr5A 685532358 685533235 877 False 1321.0 1321 93.8640 1 877 1 chr5A.!!$F1 876
7 TraesCS5D01G066400 chr5A 51791950 51792634 684 True 791.0 791 88.2610 900 1556 1 chr5A.!!$R1 656
8 TraesCS5D01G066400 chr5A 51747897 51748572 675 True 282.5 459 88.6125 926 1555 2 chr5A.!!$R2 629
9 TraesCS5D01G066400 chr6D 350238055 350238922 867 True 1297.0 1297 93.6850 4 869 1 chr6D.!!$R2 865
10 TraesCS5D01G066400 chr7A 48070187 48071057 870 False 1192.0 1192 91.4380 1 869 1 chr7A.!!$F1 868
11 TraesCS5D01G066400 chr7D 51796291 51797163 872 True 1186.0 1186 91.2300 4 876 1 chr7D.!!$R1 872
12 TraesCS5D01G066400 chr6A 149386352 149387214 862 False 1182.0 1182 91.4550 6 866 1 chr6A.!!$F1 860
13 TraesCS5D01G066400 chr2D 90306982 90307846 864 False 1182.0 1182 91.5140 1 860 1 chr2D.!!$F1 859
14 TraesCS5D01G066400 chrUn 65976041 65980022 3981 True 535.5 865 84.6335 887 2544 2 chrUn.!!$R3 1657
15 TraesCS5D01G066400 chrUn 337950295 337950848 553 False 425.0 425 81.1950 997 1545 1 chrUn.!!$F1 548
16 TraesCS5D01G066400 chrUn 337958886 337959402 516 True 425.0 425 81.9550 1029 1548 1 chrUn.!!$R1 519
17 TraesCS5D01G066400 chrUn 427501094 427501647 553 False 425.0 425 81.1950 997 1545 1 chrUn.!!$F2 548
18 TraesCS5D01G066400 chrUn 65968515 65969198 683 True 285.0 446 86.1240 900 1555 2 chrUn.!!$R2 655

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
132 134 1.003812 ACCAGCCCGCAGTATTTTACA 59.996 47.619 0.0 0.0 0.0 2.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1655 1774 0.032416 TCGAGCTAGTTAGGCCCCTT 60.032 55.0 0.0 0.0 0.0 3.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 32 3.210012 ATGCTTGAAGCCACGGGGT 62.210 57.895 15.43 0.00 41.51 4.95
132 134 1.003812 ACCAGCCCGCAGTATTTTACA 59.996 47.619 0.00 0.00 0.00 2.41
230 232 5.688176 GGATCAAACTATAAGTCTCGAGCAC 59.312 44.000 7.81 7.22 0.00 4.40
271 273 3.635433 CGGATCCGCTAACGAAAGA 57.365 52.632 23.37 0.00 43.93 2.52
280 285 3.311106 CGCTAACGAAAGACTTACCACA 58.689 45.455 0.00 0.00 43.93 4.17
418 423 8.311109 TGTATGATTCTATCGGCAATTAAGCTA 58.689 33.333 0.00 0.00 34.17 3.32
527 532 4.079730 GGGGGAGAATGTTAGGTTGATCTT 60.080 45.833 0.00 0.00 0.00 2.40
534 539 2.037902 TGTTAGGTTGATCTTCACCGCA 59.962 45.455 0.00 0.00 0.00 5.69
700 712 1.061967 ACCCCACCGATATTCCCTACA 60.062 52.381 0.00 0.00 0.00 2.74
786 802 2.660064 GGCCACCGTCCTCATGACT 61.660 63.158 0.00 0.00 42.13 3.41
883 901 9.806203 GAGGAACTATCATCAATATCATCTCAG 57.194 37.037 0.00 0.00 41.55 3.35
884 902 8.760735 AGGAACTATCATCAATATCATCTCAGG 58.239 37.037 0.00 0.00 36.02 3.86
885 903 8.756927 GGAACTATCATCAATATCATCTCAGGA 58.243 37.037 0.00 0.00 0.00 3.86
1004 1073 0.609131 GCAAGTCCAGCTAAGCCCAA 60.609 55.000 0.00 0.00 0.00 4.12
1026 1098 7.373493 CCAAAGAAATTAAGAAGTCAGCACAT 58.627 34.615 0.00 0.00 0.00 3.21
1075 1163 2.536803 CGCCTATAAATACACGCACGTT 59.463 45.455 0.00 0.00 0.00 3.99
1149 1249 4.642429 AGCCAACCTGTTTACTACTCAAG 58.358 43.478 0.00 0.00 0.00 3.02
1258 1358 4.481112 GCACCGCGATGGGCAAAG 62.481 66.667 8.23 0.00 44.64 2.77
1302 1402 0.321996 AGAAGGAGAGTTTCACGGGC 59.678 55.000 0.00 0.00 0.00 6.13
1343 1443 2.690778 GCAACTCATGGACCACCGC 61.691 63.158 0.00 0.00 39.42 5.68
1368 1468 1.213619 TGCATCCATGGGGGTCTTCA 61.214 55.000 13.02 0.00 38.11 3.02
1374 1474 4.974438 TGGGGGTCTTCACCGGCT 62.974 66.667 0.00 0.00 44.91 5.52
1412 1512 1.817099 GGCACCGATGAAGCTGGAG 60.817 63.158 0.00 0.00 0.00 3.86
1537 1656 5.186996 AGGAAATAAAGCTTGTGTGTGTG 57.813 39.130 0.00 0.00 0.00 3.82
1556 1675 9.061435 TGTGTGTGTCATGATTGATTTACTAAA 57.939 29.630 0.00 0.00 33.56 1.85
1613 1732 9.754382 ATTCATCTTCAATTATGGCAATACAAC 57.246 29.630 0.00 0.00 0.00 3.32
1616 1735 7.384439 TCTTCAATTATGGCAATACAACGAA 57.616 32.000 0.00 0.00 0.00 3.85
1617 1736 7.247728 TCTTCAATTATGGCAATACAACGAAC 58.752 34.615 0.00 0.00 0.00 3.95
1618 1737 6.502136 TCAATTATGGCAATACAACGAACA 57.498 33.333 0.00 0.00 0.00 3.18
1619 1738 6.318628 TCAATTATGGCAATACAACGAACAC 58.681 36.000 0.00 0.00 0.00 3.32
1621 1740 1.968704 TGGCAATACAACGAACACCA 58.031 45.000 0.00 0.00 0.00 4.17
1622 1741 2.298610 TGGCAATACAACGAACACCAA 58.701 42.857 0.00 0.00 0.00 3.67
1623 1742 2.033550 TGGCAATACAACGAACACCAAC 59.966 45.455 0.00 0.00 0.00 3.77
1624 1743 2.303537 GCAATACAACGAACACCAACG 58.696 47.619 0.00 0.00 0.00 4.10
1625 1744 2.303537 CAATACAACGAACACCAACGC 58.696 47.619 0.00 0.00 0.00 4.84
1627 1746 0.805322 TACAACGAACACCAACGCGT 60.805 50.000 5.58 5.58 38.81 6.01
1628 1747 1.649941 CAACGAACACCAACGCGTG 60.650 57.895 14.98 3.05 37.03 5.34
1630 1749 2.027628 AACGAACACCAACGCGTGTC 62.028 55.000 14.98 2.83 46.19 3.67
1632 1751 0.935831 CGAACACCAACGCGTGTCTA 60.936 55.000 14.98 0.00 46.19 2.59
1633 1752 0.782384 GAACACCAACGCGTGTCTAG 59.218 55.000 14.98 4.84 46.19 2.43
1634 1753 0.103572 AACACCAACGCGTGTCTAGT 59.896 50.000 14.98 5.57 46.19 2.57
1635 1754 0.953727 ACACCAACGCGTGTCTAGTA 59.046 50.000 14.98 0.00 43.50 1.82
1637 1756 1.068748 CACCAACGCGTGTCTAGTAGT 60.069 52.381 14.98 0.00 0.00 2.73
1639 1758 3.012518 ACCAACGCGTGTCTAGTAGTAT 58.987 45.455 14.98 0.00 0.00 2.12
1641 1760 3.181503 CCAACGCGTGTCTAGTAGTATGT 60.182 47.826 14.98 0.00 0.00 2.29
1643 1762 3.264947 ACGCGTGTCTAGTAGTATGTGA 58.735 45.455 12.93 0.00 0.00 3.58
1644 1763 3.686241 ACGCGTGTCTAGTAGTATGTGAA 59.314 43.478 12.93 0.00 0.00 3.18
1648 1767 6.439599 GCGTGTCTAGTAGTATGTGAATCAT 58.560 40.000 0.00 0.00 40.25 2.45
1650 1769 7.746916 GCGTGTCTAGTAGTATGTGAATCATAG 59.253 40.741 0.00 0.00 39.36 2.23
1651 1770 8.231161 CGTGTCTAGTAGTATGTGAATCATAGG 58.769 40.741 0.00 0.00 39.36 2.57
1652 1771 8.024285 GTGTCTAGTAGTATGTGAATCATAGGC 58.976 40.741 0.00 0.00 39.36 3.93
1653 1772 7.176865 TGTCTAGTAGTATGTGAATCATAGGCC 59.823 40.741 0.00 0.00 39.36 5.19
1654 1773 7.394923 GTCTAGTAGTATGTGAATCATAGGCCT 59.605 40.741 11.78 11.78 39.36 5.19
1655 1774 8.612145 TCTAGTAGTATGTGAATCATAGGCCTA 58.388 37.037 16.60 16.60 39.36 3.93
1656 1775 9.244292 CTAGTAGTATGTGAATCATAGGCCTAA 57.756 37.037 18.42 0.51 39.36 2.69
1657 1776 8.128322 AGTAGTATGTGAATCATAGGCCTAAG 57.872 38.462 18.42 13.33 39.36 2.18
1658 1777 6.365970 AGTATGTGAATCATAGGCCTAAGG 57.634 41.667 18.42 12.49 39.36 2.69
1659 1778 4.647564 ATGTGAATCATAGGCCTAAGGG 57.352 45.455 18.42 9.80 34.67 3.95
1660 1779 2.711009 TGTGAATCATAGGCCTAAGGGG 59.289 50.000 18.42 7.16 38.36 4.79
1661 1780 7.045948 TATGTGAATCATAGGCCTAAGGGGC 62.046 48.000 18.42 7.43 46.98 5.80
1672 1791 1.972075 CCTAAGGGGCCTAACTAGCTC 59.028 57.143 0.84 0.00 0.00 4.09
1673 1792 1.614413 CTAAGGGGCCTAACTAGCTCG 59.386 57.143 0.84 0.00 0.00 5.03
1674 1793 0.032416 AAGGGGCCTAACTAGCTCGA 60.032 55.000 0.84 0.00 0.00 4.04
1675 1794 0.468400 AGGGGCCTAACTAGCTCGAG 60.468 60.000 8.45 8.45 0.00 4.04
1676 1795 1.364536 GGGCCTAACTAGCTCGAGC 59.635 63.158 30.01 30.01 42.49 5.03
1690 1809 1.350193 TCGAGCTCAAACGAGAATGC 58.650 50.000 15.40 0.00 34.49 3.56
1691 1810 1.070821 CGAGCTCAAACGAGAATGCA 58.929 50.000 15.40 0.00 31.68 3.96
1692 1811 1.662629 CGAGCTCAAACGAGAATGCAT 59.337 47.619 15.40 0.00 31.68 3.96
1693 1812 2.536329 CGAGCTCAAACGAGAATGCATG 60.536 50.000 15.40 0.00 31.68 4.06
1694 1813 2.674852 GAGCTCAAACGAGAATGCATGA 59.325 45.455 9.40 0.00 31.68 3.07
1695 1814 3.076621 AGCTCAAACGAGAATGCATGAA 58.923 40.909 0.00 0.00 31.68 2.57
1696 1815 3.693085 AGCTCAAACGAGAATGCATGAAT 59.307 39.130 0.00 0.00 31.68 2.57
1697 1816 4.877823 AGCTCAAACGAGAATGCATGAATA 59.122 37.500 0.00 0.00 31.68 1.75
1699 1818 5.220739 GCTCAAACGAGAATGCATGAATAGT 60.221 40.000 0.00 0.00 31.68 2.12
1700 1819 6.018751 GCTCAAACGAGAATGCATGAATAGTA 60.019 38.462 0.00 0.00 31.68 1.82
1701 1820 7.465916 GCTCAAACGAGAATGCATGAATAGTAA 60.466 37.037 0.00 0.00 31.68 2.24
1703 1822 8.726068 TCAAACGAGAATGCATGAATAGTAAAA 58.274 29.630 0.00 0.00 0.00 1.52
1704 1823 9.507280 CAAACGAGAATGCATGAATAGTAAAAT 57.493 29.630 0.00 0.00 0.00 1.82
1768 3124 7.706281 TTTTTGTGCGATACATTGACAAAAT 57.294 28.000 0.00 0.00 42.79 1.82
1770 3126 6.926280 TTGTGCGATACATTGACAAAATTC 57.074 33.333 0.00 0.00 39.48 2.17
1771 3127 5.398169 TGTGCGATACATTGACAAAATTCC 58.602 37.500 0.00 0.00 33.42 3.01
1772 3128 4.495472 GTGCGATACATTGACAAAATTCCG 59.505 41.667 0.00 0.00 0.00 4.30
1773 3129 4.393371 TGCGATACATTGACAAAATTCCGA 59.607 37.500 0.00 0.00 0.00 4.55
1774 3130 4.963953 GCGATACATTGACAAAATTCCGAG 59.036 41.667 0.00 0.00 0.00 4.63
1775 3131 5.447279 GCGATACATTGACAAAATTCCGAGT 60.447 40.000 0.00 0.00 0.00 4.18
1776 3132 5.959527 CGATACATTGACAAAATTCCGAGTG 59.040 40.000 0.00 0.00 0.00 3.51
1777 3133 3.900941 ACATTGACAAAATTCCGAGTGC 58.099 40.909 0.00 0.00 0.00 4.40
1778 3134 3.569701 ACATTGACAAAATTCCGAGTGCT 59.430 39.130 0.00 0.00 0.00 4.40
1780 3136 3.624326 TGACAAAATTCCGAGTGCTTG 57.376 42.857 0.00 0.00 0.00 4.01
1782 3138 1.680735 ACAAAATTCCGAGTGCTTGCA 59.319 42.857 0.00 0.00 0.00 4.08
1783 3139 2.100584 ACAAAATTCCGAGTGCTTGCAA 59.899 40.909 0.00 0.00 0.00 4.08
1784 3140 3.122297 CAAAATTCCGAGTGCTTGCAAA 58.878 40.909 0.00 0.00 0.00 3.68
1785 3141 3.451141 AAATTCCGAGTGCTTGCAAAA 57.549 38.095 0.00 0.00 0.00 2.44
1789 3145 3.011949 TCCGAGTGCTTGCAAAATTTC 57.988 42.857 0.00 0.00 0.00 2.17
1790 3146 2.360483 TCCGAGTGCTTGCAAAATTTCA 59.640 40.909 0.00 0.00 0.00 2.69
1792 3148 3.365820 CCGAGTGCTTGCAAAATTTCATC 59.634 43.478 0.00 0.00 0.00 2.92
1793 3149 3.982701 CGAGTGCTTGCAAAATTTCATCA 59.017 39.130 0.00 0.00 0.00 3.07
1795 3151 5.444087 CGAGTGCTTGCAAAATTTCATCATG 60.444 40.000 0.00 0.00 0.00 3.07
1796 3152 5.543714 AGTGCTTGCAAAATTTCATCATGA 58.456 33.333 0.00 0.00 0.00 3.07
1797 3153 5.992829 AGTGCTTGCAAAATTTCATCATGAA 59.007 32.000 0.00 0.00 34.03 2.57
1810 3166 7.892778 TTTCATCATGAAATCACATTTGTGG 57.107 32.000 8.85 0.00 41.02 4.17
1811 3167 6.837471 TCATCATGAAATCACATTTGTGGA 57.163 33.333 10.60 0.00 45.65 4.02
1812 3168 7.229581 TCATCATGAAATCACATTTGTGGAA 57.770 32.000 10.60 0.00 45.65 3.53
1813 3169 7.317390 TCATCATGAAATCACATTTGTGGAAG 58.683 34.615 10.60 0.00 45.65 3.46
1814 3170 6.653526 TCATGAAATCACATTTGTGGAAGT 57.346 33.333 10.60 0.00 45.65 3.01
1815 3171 6.448852 TCATGAAATCACATTTGTGGAAGTG 58.551 36.000 10.60 0.00 45.65 3.16
1816 3172 5.199024 TGAAATCACATTTGTGGAAGTGG 57.801 39.130 10.60 0.00 45.65 4.00
1817 3173 4.648762 TGAAATCACATTTGTGGAAGTGGT 59.351 37.500 10.60 0.00 45.65 4.16
1818 3174 5.830457 TGAAATCACATTTGTGGAAGTGGTA 59.170 36.000 10.60 0.00 45.65 3.25
1819 3175 5.964958 AATCACATTTGTGGAAGTGGTAG 57.035 39.130 10.60 0.00 45.65 3.18
1820 3176 3.146066 TCACATTTGTGGAAGTGGTAGC 58.854 45.455 10.60 0.00 45.65 3.58
1821 3177 2.884012 CACATTTGTGGAAGTGGTAGCA 59.116 45.455 2.69 0.00 42.10 3.49
1822 3178 3.317711 CACATTTGTGGAAGTGGTAGCAA 59.682 43.478 0.00 0.00 42.10 3.91
1823 3179 3.957497 ACATTTGTGGAAGTGGTAGCAAA 59.043 39.130 0.00 0.00 0.00 3.68
1824 3180 4.404073 ACATTTGTGGAAGTGGTAGCAAAA 59.596 37.500 0.00 0.00 31.10 2.44
1825 3181 5.105146 ACATTTGTGGAAGTGGTAGCAAAAA 60.105 36.000 0.00 0.00 31.10 1.94
1848 3204 6.887626 AAAATGCTCCAAAAATGCAATTCT 57.112 29.167 0.00 0.00 40.24 2.40
1849 3205 6.490566 AAATGCTCCAAAAATGCAATTCTC 57.509 33.333 0.00 0.00 40.24 2.87
1850 3206 4.603989 TGCTCCAAAAATGCAATTCTCA 57.396 36.364 0.00 0.00 33.67 3.27
1851 3207 4.958509 TGCTCCAAAAATGCAATTCTCAA 58.041 34.783 0.00 0.00 33.67 3.02
1852 3208 5.366460 TGCTCCAAAAATGCAATTCTCAAA 58.634 33.333 0.00 0.00 33.67 2.69
1853 3209 5.821470 TGCTCCAAAAATGCAATTCTCAAAA 59.179 32.000 0.00 0.00 33.67 2.44
1854 3210 6.017770 TGCTCCAAAAATGCAATTCTCAAAAG 60.018 34.615 0.00 0.00 33.67 2.27
1855 3211 6.303021 TCCAAAAATGCAATTCTCAAAAGC 57.697 33.333 0.00 0.00 33.67 3.51
1856 3212 5.821470 TCCAAAAATGCAATTCTCAAAAGCA 59.179 32.000 0.00 0.00 33.67 3.91
1857 3213 6.487331 TCCAAAAATGCAATTCTCAAAAGCAT 59.513 30.769 0.00 0.00 46.86 3.79
1886 3242 9.985318 TCAAGTGCTGATTTTGTTTTATTTTTG 57.015 25.926 0.00 0.00 0.00 2.44
1891 3247 6.085328 GCTGATTTTGTTTTATTTTTGCTGCG 59.915 34.615 0.00 0.00 0.00 5.18
1892 3248 7.239166 TGATTTTGTTTTATTTTTGCTGCGA 57.761 28.000 0.00 0.00 0.00 5.10
1894 3250 6.654793 TTTTGTTTTATTTTTGCTGCGACT 57.345 29.167 0.00 0.00 0.00 4.18
1895 3251 6.654793 TTTGTTTTATTTTTGCTGCGACTT 57.345 29.167 0.00 0.00 0.00 3.01
1896 3252 5.881637 TGTTTTATTTTTGCTGCGACTTC 57.118 34.783 0.00 0.00 0.00 3.01
1897 3253 4.742659 TGTTTTATTTTTGCTGCGACTTCC 59.257 37.500 0.00 0.00 0.00 3.46
1898 3254 4.576216 TTTATTTTTGCTGCGACTTCCA 57.424 36.364 0.00 0.00 0.00 3.53
1900 3256 0.028770 TTTTTGCTGCGACTTCCACG 59.971 50.000 0.00 0.00 0.00 4.94
1901 3257 0.812014 TTTTGCTGCGACTTCCACGA 60.812 50.000 0.00 0.00 0.00 4.35
1902 3258 0.812014 TTTGCTGCGACTTCCACGAA 60.812 50.000 0.00 0.00 0.00 3.85
1906 3262 0.716108 CTGCGACTTCCACGAATGTC 59.284 55.000 0.00 0.00 0.00 3.06
1907 3263 0.032815 TGCGACTTCCACGAATGTCA 59.967 50.000 0.00 0.00 0.00 3.58
1909 3265 1.732259 GCGACTTCCACGAATGTCATT 59.268 47.619 0.00 0.00 0.00 2.57
1911 3267 3.725010 GCGACTTCCACGAATGTCATTTC 60.725 47.826 0.00 0.00 0.00 2.17
1912 3268 3.431912 CGACTTCCACGAATGTCATTTCA 59.568 43.478 0.00 0.00 0.00 2.69
1913 3269 4.084066 CGACTTCCACGAATGTCATTTCAA 60.084 41.667 0.00 0.00 0.00 2.69
1915 3271 5.702865 ACTTCCACGAATGTCATTTCAATG 58.297 37.500 0.00 0.00 37.75 2.82
1916 3272 5.241506 ACTTCCACGAATGTCATTTCAATGT 59.758 36.000 0.00 0.00 37.65 2.71
1917 3273 5.045668 TCCACGAATGTCATTTCAATGTG 57.954 39.130 0.00 4.66 37.65 3.21
1918 3274 4.759183 TCCACGAATGTCATTTCAATGTGA 59.241 37.500 0.00 0.00 37.65 3.58
1934 3290 9.835389 TTTCAATGTGAAAAATTCCAGAATCTT 57.165 25.926 0.99 0.00 42.72 2.40
2021 3468 8.865590 TTTTAATTTACTGTTCAACCAAGCTC 57.134 30.769 0.00 0.00 0.00 4.09
2022 3469 7.575414 TTAATTTACTGTTCAACCAAGCTCA 57.425 32.000 0.00 0.00 0.00 4.26
2025 3472 6.463995 TTTACTGTTCAACCAAGCTCATTT 57.536 33.333 0.00 0.00 0.00 2.32
2026 3473 4.311816 ACTGTTCAACCAAGCTCATTTG 57.688 40.909 0.00 0.00 0.00 2.32
2027 3474 3.953612 ACTGTTCAACCAAGCTCATTTGA 59.046 39.130 0.00 0.00 0.00 2.69
2028 3475 4.202050 ACTGTTCAACCAAGCTCATTTGAC 60.202 41.667 3.90 2.06 0.00 3.18
2029 3476 3.068024 TGTTCAACCAAGCTCATTTGACC 59.932 43.478 3.90 0.00 0.00 4.02
2030 3477 3.228188 TCAACCAAGCTCATTTGACCT 57.772 42.857 0.00 0.00 0.00 3.85
2031 3478 3.149196 TCAACCAAGCTCATTTGACCTC 58.851 45.455 0.00 0.00 0.00 3.85
2032 3479 1.813513 ACCAAGCTCATTTGACCTCG 58.186 50.000 0.00 0.00 0.00 4.63
2033 3480 1.089920 CCAAGCTCATTTGACCTCGG 58.910 55.000 0.00 0.00 0.00 4.63
2034 3481 1.089920 CAAGCTCATTTGACCTCGGG 58.910 55.000 0.00 0.00 0.00 5.14
2035 3482 0.984230 AAGCTCATTTGACCTCGGGA 59.016 50.000 0.00 0.00 0.00 5.14
2036 3483 0.539051 AGCTCATTTGACCTCGGGAG 59.461 55.000 0.00 0.00 0.00 4.30
2037 3484 1.092345 GCTCATTTGACCTCGGGAGC 61.092 60.000 0.00 0.00 40.63 4.70
2039 3486 0.911769 TCATTTGACCTCGGGAGCAT 59.088 50.000 0.00 0.00 0.00 3.79
2041 3488 2.503765 TCATTTGACCTCGGGAGCATAA 59.496 45.455 0.00 0.00 0.00 1.90
2042 3489 2.691409 TTTGACCTCGGGAGCATAAG 57.309 50.000 0.00 0.00 0.00 1.73
2043 3490 0.830648 TTGACCTCGGGAGCATAAGG 59.169 55.000 0.00 0.00 34.94 2.69
2045 3492 0.389757 GACCTCGGGAGCATAAGGAC 59.610 60.000 0.00 0.00 32.99 3.85
2046 3493 0.325296 ACCTCGGGAGCATAAGGACA 60.325 55.000 0.00 0.00 32.99 4.02
2047 3494 0.105039 CCTCGGGAGCATAAGGACAC 59.895 60.000 0.00 0.00 0.00 3.67
2050 3497 1.906574 TCGGGAGCATAAGGACACTTT 59.093 47.619 0.00 0.00 38.14 2.66
2051 3498 2.093658 TCGGGAGCATAAGGACACTTTC 60.094 50.000 0.00 0.00 38.14 2.62
2052 3499 2.280628 GGGAGCATAAGGACACTTTCG 58.719 52.381 0.00 0.00 38.14 3.46
2054 3501 3.190874 GGAGCATAAGGACACTTTCGAG 58.809 50.000 0.00 0.00 38.14 4.04
2055 3502 3.190874 GAGCATAAGGACACTTTCGAGG 58.809 50.000 0.00 0.00 38.14 4.63
2056 3503 1.666189 GCATAAGGACACTTTCGAGGC 59.334 52.381 0.00 0.00 38.14 4.70
2057 3504 2.280628 CATAAGGACACTTTCGAGGCC 58.719 52.381 0.00 0.00 38.14 5.19
2058 3505 1.640917 TAAGGACACTTTCGAGGCCT 58.359 50.000 3.86 3.86 38.14 5.19
2061 3508 1.550976 AGGACACTTTCGAGGCCTAAG 59.449 52.381 4.42 9.02 0.00 2.18
2063 3510 2.417515 GGACACTTTCGAGGCCTAAGAG 60.418 54.545 18.71 13.68 0.00 2.85
2064 3511 1.066787 ACACTTTCGAGGCCTAAGAGC 60.067 52.381 18.71 0.00 0.00 4.09
2065 3512 1.066858 CACTTTCGAGGCCTAAGAGCA 60.067 52.381 18.71 6.23 0.00 4.26
2067 3514 2.237392 ACTTTCGAGGCCTAAGAGCATT 59.763 45.455 18.71 0.00 0.00 3.56
2068 3515 2.604046 TTCGAGGCCTAAGAGCATTC 57.396 50.000 4.42 0.00 0.00 2.67
2070 3517 1.137086 TCGAGGCCTAAGAGCATTCAC 59.863 52.381 4.42 0.00 0.00 3.18
2072 3519 2.677902 CGAGGCCTAAGAGCATTCACAA 60.678 50.000 4.42 0.00 0.00 3.33
2073 3520 2.680339 GAGGCCTAAGAGCATTCACAAC 59.320 50.000 4.42 0.00 0.00 3.32
2074 3521 1.745653 GGCCTAAGAGCATTCACAACC 59.254 52.381 0.00 0.00 0.00 3.77
2075 3522 2.436417 GCCTAAGAGCATTCACAACCA 58.564 47.619 0.00 0.00 0.00 3.67
2076 3523 2.421424 GCCTAAGAGCATTCACAACCAG 59.579 50.000 0.00 0.00 0.00 4.00
2077 3524 3.012518 CCTAAGAGCATTCACAACCAGG 58.987 50.000 0.00 0.00 0.00 4.45
2078 3525 1.251251 AAGAGCATTCACAACCAGGC 58.749 50.000 0.00 0.00 0.00 4.85
2079 3526 0.610232 AGAGCATTCACAACCAGGCC 60.610 55.000 0.00 0.00 0.00 5.19
2082 3529 1.187567 GCATTCACAACCAGGCCCTT 61.188 55.000 0.00 0.00 0.00 3.95
2085 3532 2.757894 TTCACAACCAGGCCCTTTAA 57.242 45.000 0.00 0.00 0.00 1.52
2086 3533 2.757894 TCACAACCAGGCCCTTTAAA 57.242 45.000 0.00 0.00 0.00 1.52
2088 3535 1.000717 CACAACCAGGCCCTTTAAACG 60.001 52.381 0.00 0.00 0.00 3.60
2089 3536 1.324383 CAACCAGGCCCTTTAAACGT 58.676 50.000 0.00 0.00 0.00 3.99
2091 3538 1.612676 ACCAGGCCCTTTAAACGTTC 58.387 50.000 0.00 0.00 0.00 3.95
2092 3539 0.519961 CCAGGCCCTTTAAACGTTCG 59.480 55.000 0.00 0.00 0.00 3.95
2093 3540 0.519961 CAGGCCCTTTAAACGTTCGG 59.480 55.000 0.00 0.00 0.00 4.30
2094 3541 0.607217 AGGCCCTTTAAACGTTCGGG 60.607 55.000 16.29 16.29 37.97 5.14
2096 3543 1.498611 CCCTTTAAACGTTCGGGCG 59.501 57.895 0.00 0.00 37.94 6.13
2097 3544 1.498611 CCTTTAAACGTTCGGGCGG 59.501 57.895 0.00 0.00 35.98 6.13
2101 4624 2.712325 TTAAACGTTCGGGCGGCAGA 62.712 55.000 12.47 10.15 35.98 4.26
2114 4637 3.595691 GGCAGACCCGATCACTATG 57.404 57.895 0.00 0.00 0.00 2.23
2115 4638 0.753262 GGCAGACCCGATCACTATGT 59.247 55.000 0.00 0.00 0.00 2.29
2116 4639 1.961394 GGCAGACCCGATCACTATGTA 59.039 52.381 0.00 0.00 0.00 2.29
2117 4640 2.563179 GGCAGACCCGATCACTATGTAT 59.437 50.000 0.00 0.00 0.00 2.29
2120 4643 4.262036 GCAGACCCGATCACTATGTATTCA 60.262 45.833 0.00 0.00 0.00 2.57
2121 4644 5.223382 CAGACCCGATCACTATGTATTCAC 58.777 45.833 0.00 0.00 0.00 3.18
2123 4646 5.010112 AGACCCGATCACTATGTATTCACAG 59.990 44.000 0.00 0.00 38.30 3.66
2128 4651 7.254455 CCCGATCACTATGTATTCACAGTTTTC 60.254 40.741 0.00 0.00 38.30 2.29
2139 4662 3.138304 TCACAGTTTTCTCATCCAACCG 58.862 45.455 0.00 0.00 0.00 4.44
2140 4663 2.226437 CACAGTTTTCTCATCCAACCGG 59.774 50.000 0.00 0.00 0.00 5.28
2142 4665 2.484264 CAGTTTTCTCATCCAACCGGAC 59.516 50.000 9.46 0.00 46.79 4.79
2143 4666 2.372172 AGTTTTCTCATCCAACCGGACT 59.628 45.455 9.46 0.00 46.79 3.85
2144 4667 3.146847 GTTTTCTCATCCAACCGGACTT 58.853 45.455 9.46 0.00 46.79 3.01
2151 4674 2.249844 TCCAACCGGACTTCTCAAAC 57.750 50.000 9.46 0.00 35.91 2.93
2158 4681 1.375326 GACTTCTCAAACCGGCCCT 59.625 57.895 0.00 0.00 0.00 5.19
2159 4682 0.611714 GACTTCTCAAACCGGCCCTA 59.388 55.000 0.00 0.00 0.00 3.53
2161 4684 2.433239 GACTTCTCAAACCGGCCCTATA 59.567 50.000 0.00 0.00 0.00 1.31
2162 4685 2.169978 ACTTCTCAAACCGGCCCTATAC 59.830 50.000 0.00 0.00 0.00 1.47
2163 4686 0.748450 TCTCAAACCGGCCCTATACG 59.252 55.000 0.00 0.00 0.00 3.06
2164 4687 0.462789 CTCAAACCGGCCCTATACGT 59.537 55.000 0.00 0.00 0.00 3.57
2165 4688 0.903942 TCAAACCGGCCCTATACGTT 59.096 50.000 0.00 0.00 0.00 3.99
2166 4689 1.134729 TCAAACCGGCCCTATACGTTC 60.135 52.381 0.00 0.00 0.00 3.95
2168 4691 0.462789 AACCGGCCCTATACGTTCAG 59.537 55.000 0.00 0.00 0.00 3.02
2169 4692 1.366366 CCGGCCCTATACGTTCAGG 59.634 63.158 0.00 0.00 0.00 3.86
2171 4694 1.745320 CGGCCCTATACGTTCAGGCT 61.745 60.000 15.36 0.00 43.36 4.58
2172 4695 0.249911 GGCCCTATACGTTCAGGCTG 60.250 60.000 8.58 8.58 43.36 4.85
2173 4696 0.464452 GCCCTATACGTTCAGGCTGT 59.536 55.000 15.27 0.00 40.57 4.40
2174 4697 1.134491 GCCCTATACGTTCAGGCTGTT 60.134 52.381 15.27 0.28 40.57 3.16
2175 4698 2.822764 CCCTATACGTTCAGGCTGTTC 58.177 52.381 15.27 7.90 0.00 3.18
2176 4699 2.460918 CCTATACGTTCAGGCTGTTCG 58.539 52.381 23.45 23.45 0.00 3.95
2194 4717 2.841988 GCACCCCCAAAGCCAACA 60.842 61.111 0.00 0.00 0.00 3.33
2207 4730 3.279646 CCAACACATATGTGGGGCA 57.720 52.632 33.32 0.00 45.39 5.36
2209 4732 2.895702 CCAACACATATGTGGGGCAGC 61.896 57.143 33.32 0.00 45.39 5.25
2217 4740 4.902645 GTGGGGCAGCTATGGGGC 62.903 72.222 0.00 0.00 0.00 5.80
2239 4762 4.176851 GGACTCGTCCGCTCGTCC 62.177 72.222 0.00 0.00 40.36 4.79
2240 4763 3.429141 GACTCGTCCGCTCGTCCA 61.429 66.667 0.00 0.00 0.00 4.02
2244 4767 4.907034 CGTCCGCTCGTCCATCGG 62.907 72.222 0.00 0.00 44.16 4.18
2250 4773 4.873129 CTCGTCCATCGGCCCACG 62.873 72.222 0.00 0.00 46.11 4.94
2262 4785 0.039527 GGCCCACGTCAAAACACATC 60.040 55.000 0.00 0.00 0.00 3.06
2266 4789 1.332375 CCACGTCAAAACACATCGGTT 59.668 47.619 0.00 0.00 0.00 4.44
2269 4792 2.803956 ACGTCAAAACACATCGGTTAGG 59.196 45.455 0.00 0.00 0.00 2.69
2272 4795 1.135803 CAAAACACATCGGTTAGGCGG 60.136 52.381 0.00 0.00 0.00 6.13
2273 4796 0.322322 AAACACATCGGTTAGGCGGA 59.678 50.000 0.00 0.00 0.00 5.54
2275 4798 1.216977 CACATCGGTTAGGCGGACA 59.783 57.895 0.00 0.00 0.00 4.02
2276 4799 0.179084 CACATCGGTTAGGCGGACAT 60.179 55.000 0.00 0.00 0.00 3.06
2288 4811 0.248949 GCGGACATCTCCTACGGTTC 60.249 60.000 0.00 0.00 33.79 3.62
2309 4832 3.069586 TCGGTGAGGATACATTCATGACC 59.930 47.826 0.00 0.00 38.81 4.02
2310 4833 3.744660 GGTGAGGATACATTCATGACCC 58.255 50.000 0.00 0.00 36.54 4.46
2311 4834 3.393800 GTGAGGATACATTCATGACCCG 58.606 50.000 0.00 0.00 41.41 5.28
2312 4835 2.224281 TGAGGATACATTCATGACCCGC 60.224 50.000 0.00 0.00 41.41 6.13
2313 4836 2.037772 GAGGATACATTCATGACCCGCT 59.962 50.000 0.00 0.00 41.41 5.52
2314 4837 2.037772 AGGATACATTCATGACCCGCTC 59.962 50.000 0.00 0.00 41.41 5.03
2315 4838 2.037772 GGATACATTCATGACCCGCTCT 59.962 50.000 0.00 0.00 0.00 4.09
2316 4839 3.258372 GGATACATTCATGACCCGCTCTA 59.742 47.826 0.00 0.00 0.00 2.43
2360 4884 4.811969 TCTGGCTATTTAAGTCGGACAA 57.188 40.909 11.27 0.00 40.39 3.18
2362 4886 3.255725 TGGCTATTTAAGTCGGACAACG 58.744 45.455 11.27 0.00 46.11 4.10
2363 4887 2.606272 GGCTATTTAAGTCGGACAACGG 59.394 50.000 11.27 0.00 44.45 4.44
2369 4893 2.359478 GTCGGACAACGGGGCATT 60.359 61.111 2.62 0.00 44.45 3.56
2393 4917 2.473365 CCCCATCCCCATTCCCCTC 61.473 68.421 0.00 0.00 0.00 4.30
2394 4918 2.473365 CCCATCCCCATTCCCCTCC 61.473 68.421 0.00 0.00 0.00 4.30
2399 4923 1.772156 CCCCATTCCCCTCCTCTCC 60.772 68.421 0.00 0.00 0.00 3.71
2409 4933 1.454847 CTCCTCTCCCTCCCGTCTG 60.455 68.421 0.00 0.00 0.00 3.51
2412 4936 2.680352 TCTCCCTCCCGTCTGCAC 60.680 66.667 0.00 0.00 0.00 4.57
2417 4941 2.125912 CTCCCGTCTGCACCTTCG 60.126 66.667 0.00 0.00 0.00 3.79
2418 4942 4.373116 TCCCGTCTGCACCTTCGC 62.373 66.667 0.00 0.00 0.00 4.70
2421 4945 3.782244 CGTCTGCACCTTCGCTGC 61.782 66.667 0.00 0.00 35.03 5.25
2424 4948 3.123620 CTGCACCTTCGCTGCTCC 61.124 66.667 0.00 0.00 35.53 4.70
2426 4950 4.400961 GCACCTTCGCTGCTCCCT 62.401 66.667 0.00 0.00 0.00 4.20
2428 4952 3.394836 ACCTTCGCTGCTCCCTCC 61.395 66.667 0.00 0.00 0.00 4.30
2429 4953 3.080121 CCTTCGCTGCTCCCTCCT 61.080 66.667 0.00 0.00 0.00 3.69
2430 4954 2.498726 CTTCGCTGCTCCCTCCTC 59.501 66.667 0.00 0.00 0.00 3.71
2431 4955 2.038007 TTCGCTGCTCCCTCCTCT 59.962 61.111 0.00 0.00 0.00 3.69
2432 4956 2.015227 CTTCGCTGCTCCCTCCTCTC 62.015 65.000 0.00 0.00 0.00 3.20
2433 4957 2.441901 CGCTGCTCCCTCCTCTCT 60.442 66.667 0.00 0.00 0.00 3.10
2434 4958 2.489275 CGCTGCTCCCTCCTCTCTC 61.489 68.421 0.00 0.00 0.00 3.20
2435 4959 1.076044 GCTGCTCCCTCCTCTCTCT 60.076 63.158 0.00 0.00 0.00 3.10
2436 4960 1.109323 GCTGCTCCCTCCTCTCTCTC 61.109 65.000 0.00 0.00 0.00 3.20
2437 4961 0.258484 CTGCTCCCTCCTCTCTCTCA 59.742 60.000 0.00 0.00 0.00 3.27
2438 4962 0.033601 TGCTCCCTCCTCTCTCTCAC 60.034 60.000 0.00 0.00 0.00 3.51
2439 4963 0.755327 GCTCCCTCCTCTCTCTCACC 60.755 65.000 0.00 0.00 0.00 4.02
2440 4964 0.106217 CTCCCTCCTCTCTCTCACCC 60.106 65.000 0.00 0.00 0.00 4.61
2441 4965 1.454847 CCCTCCTCTCTCTCACCCG 60.455 68.421 0.00 0.00 0.00 5.28
2442 4966 1.454847 CCTCCTCTCTCTCACCCGG 60.455 68.421 0.00 0.00 0.00 5.73
2443 4967 1.304952 CTCCTCTCTCTCACCCGGT 59.695 63.158 0.00 0.00 0.00 5.28
2462 4986 2.356227 GGTCCTCTTCCACTTCCAATCC 60.356 54.545 0.00 0.00 0.00 3.01
2463 4987 2.305927 GTCCTCTTCCACTTCCAATCCA 59.694 50.000 0.00 0.00 0.00 3.41
2465 4989 3.009473 TCCTCTTCCACTTCCAATCCAAG 59.991 47.826 0.00 0.00 0.00 3.61
2468 4992 2.978156 TCCACTTCCAATCCAAGCTT 57.022 45.000 0.00 0.00 0.00 3.74
2470 4994 1.067354 CCACTTCCAATCCAAGCTTGC 60.067 52.381 21.43 0.00 0.00 4.01
2479 5003 2.328099 CCAAGCTTGCCGTCAGTCC 61.328 63.158 21.43 0.00 0.00 3.85
2482 5006 2.771763 AAGCTTGCCGTCAGTCCTCG 62.772 60.000 0.00 0.00 0.00 4.63
2508 5032 4.720902 CTGCCGCCATGGTCCACA 62.721 66.667 14.67 6.18 41.21 4.17
2537 5061 0.798159 CGCATTACAAGCTGCTGACA 59.202 50.000 1.35 0.00 36.23 3.58
2540 5064 1.129251 CATTACAAGCTGCTGACACCG 59.871 52.381 1.35 0.00 0.00 4.94
2544 5068 0.957395 CAAGCTGCTGACACCGGAAT 60.957 55.000 9.46 0.00 0.00 3.01
2545 5069 0.957395 AAGCTGCTGACACCGGAATG 60.957 55.000 9.46 0.00 0.00 2.67
2546 5070 1.375908 GCTGCTGACACCGGAATGA 60.376 57.895 9.46 0.00 0.00 2.57
2547 5071 1.639298 GCTGCTGACACCGGAATGAC 61.639 60.000 9.46 0.00 0.00 3.06
2548 5072 1.354337 CTGCTGACACCGGAATGACG 61.354 60.000 9.46 0.00 0.00 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 4.276678 GTGGCTTCAAGCATGCTATGAATA 59.723 41.667 29.07 20.90 44.75 1.75
132 134 3.247006 ACTCGACTTGTTGTTGTGAGT 57.753 42.857 0.00 0.00 33.87 3.41
230 232 5.911280 CGCAAGCATATCTTTTGTCCTTATG 59.089 40.000 0.00 0.00 31.27 1.90
379 384 9.914131 GATAGAATCATACAGCTACAACATACA 57.086 33.333 0.00 0.00 0.00 2.29
418 423 5.363101 ACATAGAGCATGTTTCATCGTCAT 58.637 37.500 0.00 0.00 46.01 3.06
622 633 5.152934 GACCCCCACCTCTGTTAATATAGA 58.847 45.833 0.00 0.00 0.00 1.98
700 712 0.467659 ACCGCGCTAACCCTAGATCT 60.468 55.000 5.56 0.00 0.00 2.75
883 901 6.813649 GCCTGTCCTTGAATTTTTAAGAATCC 59.186 38.462 0.00 0.00 0.00 3.01
884 902 7.378181 TGCCTGTCCTTGAATTTTTAAGAATC 58.622 34.615 0.00 0.00 0.00 2.52
885 903 7.301868 TGCCTGTCCTTGAATTTTTAAGAAT 57.698 32.000 0.00 0.00 0.00 2.40
895 913 1.822990 CTGCATTGCCTGTCCTTGAAT 59.177 47.619 6.12 0.00 0.00 2.57
898 916 1.201647 CTTCTGCATTGCCTGTCCTTG 59.798 52.381 6.12 0.00 0.00 3.61
994 1016 6.925211 ACTTCTTAATTTCTTTGGGCTTAGC 58.075 36.000 0.00 0.00 0.00 3.09
1004 1073 8.854614 ACTATGTGCTGACTTCTTAATTTCTT 57.145 30.769 0.00 0.00 0.00 2.52
1026 1098 4.474287 ACGGTATTATTGGGGTGGAAACTA 59.526 41.667 0.00 0.00 0.00 2.24
1075 1163 0.036388 TTGGGCGTTTTGGTTTGCAA 60.036 45.000 0.00 0.00 0.00 4.08
1149 1249 2.648059 CTGAACCCCATGGAAGACATC 58.352 52.381 15.22 3.27 37.84 3.06
1258 1358 1.115467 TCTTCTTCTCCGGCCATCTC 58.885 55.000 2.24 0.00 0.00 2.75
1302 1402 2.495669 AGCTTCCTTCTTCTCCTCTTCG 59.504 50.000 0.00 0.00 0.00 3.79
1343 1443 2.203252 CCCATGGATGCACCCTCG 60.203 66.667 15.22 0.00 38.00 4.63
1412 1512 2.623416 GCAAAATACTACTCCATGGCCC 59.377 50.000 6.96 0.00 0.00 5.80
1484 1585 7.721399 GGGACAAGAATACAGGATAACATGATT 59.279 37.037 0.00 0.00 0.00 2.57
1490 1591 4.141779 ACGGGGACAAGAATACAGGATAAC 60.142 45.833 0.00 0.00 0.00 1.89
1492 1593 3.649843 ACGGGGACAAGAATACAGGATA 58.350 45.455 0.00 0.00 0.00 2.59
1493 1594 2.478292 ACGGGGACAAGAATACAGGAT 58.522 47.619 0.00 0.00 0.00 3.24
1496 1608 3.449737 TCCTTACGGGGACAAGAATACAG 59.550 47.826 0.00 0.00 35.33 2.74
1587 1706 9.754382 GTTGTATTGCCATAATTGAAGATGAAT 57.246 29.630 0.00 0.00 0.00 2.57
1588 1707 7.914871 CGTTGTATTGCCATAATTGAAGATGAA 59.085 33.333 0.00 0.00 0.00 2.57
1589 1708 7.281999 TCGTTGTATTGCCATAATTGAAGATGA 59.718 33.333 0.00 0.00 0.00 2.92
1590 1709 7.416817 TCGTTGTATTGCCATAATTGAAGATG 58.583 34.615 0.00 0.00 0.00 2.90
1591 1710 7.566760 TCGTTGTATTGCCATAATTGAAGAT 57.433 32.000 0.00 0.00 0.00 2.40
1592 1711 6.993786 TCGTTGTATTGCCATAATTGAAGA 57.006 33.333 0.00 0.00 0.00 2.87
1593 1712 7.008266 GTGTTCGTTGTATTGCCATAATTGAAG 59.992 37.037 0.00 0.00 0.00 3.02
1594 1713 6.804295 GTGTTCGTTGTATTGCCATAATTGAA 59.196 34.615 0.00 0.00 0.00 2.69
1595 1714 6.318628 GTGTTCGTTGTATTGCCATAATTGA 58.681 36.000 0.00 0.00 0.00 2.57
1597 1716 5.184096 TGGTGTTCGTTGTATTGCCATAATT 59.816 36.000 0.00 0.00 0.00 1.40
1598 1717 4.702612 TGGTGTTCGTTGTATTGCCATAAT 59.297 37.500 0.00 0.00 0.00 1.28
1601 1720 2.509569 TGGTGTTCGTTGTATTGCCAT 58.490 42.857 0.00 0.00 0.00 4.40
1602 1721 1.968704 TGGTGTTCGTTGTATTGCCA 58.031 45.000 0.00 0.00 0.00 4.92
1605 1724 2.303537 GCGTTGGTGTTCGTTGTATTG 58.696 47.619 0.00 0.00 0.00 1.90
1606 1725 1.070443 CGCGTTGGTGTTCGTTGTATT 60.070 47.619 0.00 0.00 0.00 1.89
1607 1726 0.509499 CGCGTTGGTGTTCGTTGTAT 59.491 50.000 0.00 0.00 0.00 2.29
1608 1727 0.805322 ACGCGTTGGTGTTCGTTGTA 60.805 50.000 5.58 0.00 31.47 2.41
1609 1728 2.101835 ACGCGTTGGTGTTCGTTGT 61.102 52.632 5.58 0.00 31.47 3.32
1610 1729 1.649941 CACGCGTTGGTGTTCGTTG 60.650 57.895 10.22 0.00 33.82 4.10
1611 1730 2.704616 CACGCGTTGGTGTTCGTT 59.295 55.556 10.22 0.00 33.82 3.85
1617 1736 1.068748 ACTACTAGACACGCGTTGGTG 60.069 52.381 10.22 0.00 43.54 4.17
1618 1737 1.242076 ACTACTAGACACGCGTTGGT 58.758 50.000 10.22 5.15 0.00 3.67
1619 1738 3.181503 ACATACTACTAGACACGCGTTGG 60.182 47.826 10.22 0.71 0.00 3.77
1621 1740 3.686241 TCACATACTACTAGACACGCGTT 59.314 43.478 10.22 0.17 0.00 4.84
1622 1741 3.264947 TCACATACTACTAGACACGCGT 58.735 45.455 5.58 5.58 0.00 6.01
1623 1742 3.938778 TCACATACTACTAGACACGCG 57.061 47.619 3.53 3.53 0.00 6.01
1624 1743 5.817988 TGATTCACATACTACTAGACACGC 58.182 41.667 0.00 0.00 0.00 5.34
1625 1744 8.231161 CCTATGATTCACATACTACTAGACACG 58.769 40.741 0.00 0.00 40.07 4.49
1627 1746 7.176865 GGCCTATGATTCACATACTACTAGACA 59.823 40.741 0.00 0.00 40.07 3.41
1628 1747 7.394923 AGGCCTATGATTCACATACTACTAGAC 59.605 40.741 1.29 0.00 40.07 2.59
1629 1748 7.471041 AGGCCTATGATTCACATACTACTAGA 58.529 38.462 1.29 0.00 40.07 2.43
1630 1749 7.710676 AGGCCTATGATTCACATACTACTAG 57.289 40.000 1.29 0.00 40.07 2.57
1632 1751 7.179338 CCTTAGGCCTATGATTCACATACTACT 59.821 40.741 23.82 0.00 40.07 2.57
1633 1752 7.324178 CCTTAGGCCTATGATTCACATACTAC 58.676 42.308 23.82 0.00 40.07 2.73
1634 1753 6.440647 CCCTTAGGCCTATGATTCACATACTA 59.559 42.308 23.82 0.00 40.07 1.82
1635 1754 5.249393 CCCTTAGGCCTATGATTCACATACT 59.751 44.000 23.82 0.00 40.07 2.12
1637 1756 4.536090 CCCCTTAGGCCTATGATTCACATA 59.464 45.833 23.82 0.52 40.07 2.29
1639 1758 2.711009 CCCCTTAGGCCTATGATTCACA 59.289 50.000 23.82 1.97 0.00 3.58
1652 1771 1.972075 GAGCTAGTTAGGCCCCTTAGG 59.028 57.143 0.00 0.00 39.47 2.69
1653 1772 1.614413 CGAGCTAGTTAGGCCCCTTAG 59.386 57.143 0.00 0.00 0.00 2.18
1654 1773 1.216175 TCGAGCTAGTTAGGCCCCTTA 59.784 52.381 0.00 0.00 0.00 2.69
1655 1774 0.032416 TCGAGCTAGTTAGGCCCCTT 60.032 55.000 0.00 0.00 0.00 3.95
1656 1775 0.468400 CTCGAGCTAGTTAGGCCCCT 60.468 60.000 0.00 0.00 0.00 4.79
1657 1776 2.042800 CTCGAGCTAGTTAGGCCCC 58.957 63.158 0.00 0.00 0.00 5.80
1658 1777 1.364536 GCTCGAGCTAGTTAGGCCC 59.635 63.158 29.88 0.00 38.21 5.80
1672 1791 1.070821 TGCATTCTCGTTTGAGCTCG 58.929 50.000 9.64 0.00 42.26 5.03
1673 1792 2.674852 TCATGCATTCTCGTTTGAGCTC 59.325 45.455 6.82 6.82 42.26 4.09
1674 1793 2.703416 TCATGCATTCTCGTTTGAGCT 58.297 42.857 0.00 0.00 42.26 4.09
1675 1794 3.476295 TTCATGCATTCTCGTTTGAGC 57.524 42.857 0.00 0.00 42.26 4.26
1676 1795 6.355397 ACTATTCATGCATTCTCGTTTGAG 57.645 37.500 0.00 0.00 43.99 3.02
1677 1796 7.841915 TTACTATTCATGCATTCTCGTTTGA 57.158 32.000 0.00 0.00 0.00 2.69
1678 1797 8.894409 TTTTACTATTCATGCATTCTCGTTTG 57.106 30.769 0.00 0.00 0.00 2.93
1751 3107 4.904116 TCGGAATTTTGTCAATGTATCGC 58.096 39.130 0.00 0.00 0.00 4.58
1752 3108 5.959527 CACTCGGAATTTTGTCAATGTATCG 59.040 40.000 0.00 0.00 0.00 2.92
1753 3109 5.739161 GCACTCGGAATTTTGTCAATGTATC 59.261 40.000 0.00 0.00 0.00 2.24
1754 3110 5.415701 AGCACTCGGAATTTTGTCAATGTAT 59.584 36.000 0.00 0.00 0.00 2.29
1756 3112 3.569701 AGCACTCGGAATTTTGTCAATGT 59.430 39.130 0.00 0.00 0.00 2.71
1757 3113 4.164822 AGCACTCGGAATTTTGTCAATG 57.835 40.909 0.00 0.00 0.00 2.82
1758 3114 4.549458 CAAGCACTCGGAATTTTGTCAAT 58.451 39.130 0.00 0.00 0.00 2.57
1759 3115 3.795150 GCAAGCACTCGGAATTTTGTCAA 60.795 43.478 0.00 0.00 0.00 3.18
1761 3117 2.287547 TGCAAGCACTCGGAATTTTGTC 60.288 45.455 0.00 0.00 0.00 3.18
1762 3118 1.680735 TGCAAGCACTCGGAATTTTGT 59.319 42.857 0.00 0.00 0.00 2.83
1764 3120 3.451141 TTTGCAAGCACTCGGAATTTT 57.549 38.095 0.00 0.00 0.00 1.82
1765 3121 3.451141 TTTTGCAAGCACTCGGAATTT 57.549 38.095 0.00 0.00 0.00 1.82
1766 3122 3.665745 ATTTTGCAAGCACTCGGAATT 57.334 38.095 0.00 0.00 0.00 2.17
1767 3123 3.665745 AATTTTGCAAGCACTCGGAAT 57.334 38.095 0.00 0.00 0.00 3.01
1768 3124 3.181482 TGAAATTTTGCAAGCACTCGGAA 60.181 39.130 0.00 0.00 0.00 4.30
1770 3126 2.741612 TGAAATTTTGCAAGCACTCGG 58.258 42.857 0.00 0.00 0.00 4.63
1771 3127 3.982701 TGATGAAATTTTGCAAGCACTCG 59.017 39.130 0.00 0.00 0.00 4.18
1772 3128 5.636121 TCATGATGAAATTTTGCAAGCACTC 59.364 36.000 0.00 0.00 0.00 3.51
1773 3129 5.543714 TCATGATGAAATTTTGCAAGCACT 58.456 33.333 0.00 0.00 0.00 4.40
1774 3130 5.849357 TCATGATGAAATTTTGCAAGCAC 57.151 34.783 0.00 0.00 0.00 4.40
1775 3131 6.862711 TTTCATGATGAAATTTTGCAAGCA 57.137 29.167 16.04 0.00 41.02 3.91
1800 3156 2.884012 TGCTACCACTTCCACAAATGTG 59.116 45.455 6.57 6.57 45.23 3.21
1801 3157 3.222173 TGCTACCACTTCCACAAATGT 57.778 42.857 0.00 0.00 0.00 2.71
1802 3158 4.582701 TTTGCTACCACTTCCACAAATG 57.417 40.909 0.00 0.00 0.00 2.32
1803 3159 5.606348 TTTTTGCTACCACTTCCACAAAT 57.394 34.783 0.00 0.00 0.00 2.32
1824 3180 7.013464 TGAGAATTGCATTTTTGGAGCATTTTT 59.987 29.630 0.00 0.00 38.19 1.94
1825 3181 6.487331 TGAGAATTGCATTTTTGGAGCATTTT 59.513 30.769 0.00 0.00 38.19 1.82
1826 3182 5.998981 TGAGAATTGCATTTTTGGAGCATTT 59.001 32.000 0.00 0.00 38.19 2.32
1827 3183 5.553123 TGAGAATTGCATTTTTGGAGCATT 58.447 33.333 0.00 0.00 38.19 3.56
1828 3184 5.155278 TGAGAATTGCATTTTTGGAGCAT 57.845 34.783 0.00 0.00 38.19 3.79
1829 3185 4.603989 TGAGAATTGCATTTTTGGAGCA 57.396 36.364 0.00 0.00 36.32 4.26
1830 3186 5.927954 TTTGAGAATTGCATTTTTGGAGC 57.072 34.783 0.00 0.00 0.00 4.70
1831 3187 6.017770 TGCTTTTGAGAATTGCATTTTTGGAG 60.018 34.615 0.00 0.00 0.00 3.86
1832 3188 5.821470 TGCTTTTGAGAATTGCATTTTTGGA 59.179 32.000 0.00 0.00 0.00 3.53
1833 3189 6.062434 TGCTTTTGAGAATTGCATTTTTGG 57.938 33.333 0.00 0.00 0.00 3.28
1839 3195 7.227910 ACTTGAAAATGCTTTTGAGAATTGCAT 59.772 29.630 0.00 0.00 44.86 3.96
1840 3196 6.539464 ACTTGAAAATGCTTTTGAGAATTGCA 59.461 30.769 0.00 0.00 38.05 4.08
1841 3197 6.849305 CACTTGAAAATGCTTTTGAGAATTGC 59.151 34.615 0.00 0.00 31.94 3.56
1842 3198 6.849305 GCACTTGAAAATGCTTTTGAGAATTG 59.151 34.615 0.00 0.00 38.84 2.32
1843 3199 6.951643 GCACTTGAAAATGCTTTTGAGAATT 58.048 32.000 0.00 0.00 38.84 2.17
1844 3200 6.535274 GCACTTGAAAATGCTTTTGAGAAT 57.465 33.333 0.00 0.00 38.84 2.40
1845 3201 5.971895 GCACTTGAAAATGCTTTTGAGAA 57.028 34.783 0.00 0.00 38.84 2.87
1854 3210 5.662211 ACAAAATCAGCACTTGAAAATGC 57.338 34.783 0.00 0.00 39.77 3.56
1860 3216 9.985318 CAAAAATAAAACAAAATCAGCACTTGA 57.015 25.926 0.00 0.00 40.85 3.02
1861 3217 8.735837 GCAAAAATAAAACAAAATCAGCACTTG 58.264 29.630 0.00 0.00 0.00 3.16
1862 3218 8.676401 AGCAAAAATAAAACAAAATCAGCACTT 58.324 25.926 0.00 0.00 0.00 3.16
1863 3219 8.124199 CAGCAAAAATAAAACAAAATCAGCACT 58.876 29.630 0.00 0.00 0.00 4.40
1866 3222 6.085328 CGCAGCAAAAATAAAACAAAATCAGC 59.915 34.615 0.00 0.00 0.00 4.26
1867 3223 7.318674 GTCGCAGCAAAAATAAAACAAAATCAG 59.681 33.333 0.00 0.00 0.00 2.90
1869 3225 7.344441 AGTCGCAGCAAAAATAAAACAAAATC 58.656 30.769 0.00 0.00 0.00 2.17
1873 3229 5.233263 GGAAGTCGCAGCAAAAATAAAACAA 59.767 36.000 0.00 0.00 0.00 2.83
1875 3231 4.742659 TGGAAGTCGCAGCAAAAATAAAAC 59.257 37.500 0.00 0.00 0.00 2.43
1883 3239 0.812014 TTCGTGGAAGTCGCAGCAAA 60.812 50.000 0.00 0.00 0.00 3.68
1886 3242 1.291877 ACATTCGTGGAAGTCGCAGC 61.292 55.000 0.00 0.00 0.00 5.25
1891 3247 5.356882 TTGAAATGACATTCGTGGAAGTC 57.643 39.130 0.05 0.00 31.80 3.01
1892 3248 5.241506 ACATTGAAATGACATTCGTGGAAGT 59.758 36.000 9.94 0.00 39.67 3.01
1894 3250 5.240403 TCACATTGAAATGACATTCGTGGAA 59.760 36.000 9.94 0.00 39.67 3.53
1895 3251 4.759183 TCACATTGAAATGACATTCGTGGA 59.241 37.500 9.94 0.00 39.67 4.02
1896 3252 5.045668 TCACATTGAAATGACATTCGTGG 57.954 39.130 9.94 0.00 39.67 4.94
1897 3253 6.989796 TTTCACATTGAAATGACATTCGTG 57.010 33.333 9.94 5.05 41.02 4.35
1898 3254 8.592105 ATTTTTCACATTGAAATGACATTCGT 57.408 26.923 9.94 0.00 44.75 3.85
1900 3256 9.815936 GGAATTTTTCACATTGAAATGACATTC 57.184 29.630 9.94 7.90 44.75 2.67
1901 3257 9.339850 TGGAATTTTTCACATTGAAATGACATT 57.660 25.926 9.94 0.00 44.75 2.71
1902 3258 8.905660 TGGAATTTTTCACATTGAAATGACAT 57.094 26.923 9.94 0.00 44.75 3.06
1998 3445 7.575414 TGAGCTTGGTTGAACAGTAAATTAA 57.425 32.000 0.00 0.00 0.00 1.40
2003 3450 5.592282 TCAAATGAGCTTGGTTGAACAGTAA 59.408 36.000 0.00 0.00 0.00 2.24
2006 3453 4.293415 GTCAAATGAGCTTGGTTGAACAG 58.707 43.478 8.07 0.00 32.12 3.16
2008 3455 3.642705 GGTCAAATGAGCTTGGTTGAAC 58.357 45.455 5.40 7.29 39.31 3.18
2018 3465 1.092345 GCTCCCGAGGTCAAATGAGC 61.092 60.000 4.48 4.48 42.47 4.26
2019 3466 0.250234 TGCTCCCGAGGTCAAATGAG 59.750 55.000 0.00 0.00 0.00 2.90
2021 3468 2.620251 TATGCTCCCGAGGTCAAATG 57.380 50.000 0.00 0.00 0.00 2.32
2022 3469 2.158755 CCTTATGCTCCCGAGGTCAAAT 60.159 50.000 0.00 0.00 0.00 2.32
2025 3472 0.032515 TCCTTATGCTCCCGAGGTCA 60.033 55.000 0.00 0.00 0.00 4.02
2026 3473 0.389757 GTCCTTATGCTCCCGAGGTC 59.610 60.000 0.00 0.00 0.00 3.85
2027 3474 0.325296 TGTCCTTATGCTCCCGAGGT 60.325 55.000 0.00 0.00 0.00 3.85
2028 3475 0.105039 GTGTCCTTATGCTCCCGAGG 59.895 60.000 0.00 0.00 0.00 4.63
2029 3476 1.115467 AGTGTCCTTATGCTCCCGAG 58.885 55.000 0.00 0.00 0.00 4.63
2030 3477 1.568504 AAGTGTCCTTATGCTCCCGA 58.431 50.000 0.00 0.00 0.00 5.14
2031 3478 2.280628 GAAAGTGTCCTTATGCTCCCG 58.719 52.381 0.00 0.00 0.00 5.14
2032 3479 2.093658 TCGAAAGTGTCCTTATGCTCCC 60.094 50.000 0.00 0.00 0.00 4.30
2033 3480 3.190874 CTCGAAAGTGTCCTTATGCTCC 58.809 50.000 0.00 0.00 0.00 4.70
2034 3481 3.190874 CCTCGAAAGTGTCCTTATGCTC 58.809 50.000 0.00 0.00 0.00 4.26
2035 3482 2.678190 GCCTCGAAAGTGTCCTTATGCT 60.678 50.000 0.00 0.00 0.00 3.79
2036 3483 1.666189 GCCTCGAAAGTGTCCTTATGC 59.334 52.381 0.00 0.00 0.00 3.14
2037 3484 2.093447 AGGCCTCGAAAGTGTCCTTATG 60.093 50.000 0.00 0.00 0.00 1.90
2039 3486 1.640917 AGGCCTCGAAAGTGTCCTTA 58.359 50.000 0.00 0.00 0.00 2.69
2041 3488 1.550976 CTTAGGCCTCGAAAGTGTCCT 59.449 52.381 9.68 0.00 0.00 3.85
2042 3489 1.549170 TCTTAGGCCTCGAAAGTGTCC 59.451 52.381 9.68 0.00 0.00 4.02
2043 3490 2.882324 CTCTTAGGCCTCGAAAGTGTC 58.118 52.381 9.68 0.00 0.00 3.67
2045 3492 1.066858 TGCTCTTAGGCCTCGAAAGTG 60.067 52.381 9.68 10.09 0.00 3.16
2046 3493 1.267121 TGCTCTTAGGCCTCGAAAGT 58.733 50.000 9.68 0.00 0.00 2.66
2047 3494 2.611225 ATGCTCTTAGGCCTCGAAAG 57.389 50.000 9.68 8.21 0.00 2.62
2050 3497 1.137086 GTGAATGCTCTTAGGCCTCGA 59.863 52.381 9.68 6.50 0.00 4.04
2051 3498 1.134699 TGTGAATGCTCTTAGGCCTCG 60.135 52.381 9.68 0.97 0.00 4.63
2052 3499 2.680339 GTTGTGAATGCTCTTAGGCCTC 59.320 50.000 9.68 0.00 0.00 4.70
2054 3501 1.745653 GGTTGTGAATGCTCTTAGGCC 59.254 52.381 0.00 0.00 0.00 5.19
2055 3502 2.421424 CTGGTTGTGAATGCTCTTAGGC 59.579 50.000 0.00 0.00 0.00 3.93
2056 3503 3.012518 CCTGGTTGTGAATGCTCTTAGG 58.987 50.000 0.00 0.00 0.00 2.69
2057 3504 2.421424 GCCTGGTTGTGAATGCTCTTAG 59.579 50.000 0.00 0.00 0.00 2.18
2058 3505 2.436417 GCCTGGTTGTGAATGCTCTTA 58.564 47.619 0.00 0.00 0.00 2.10
2061 3508 1.598701 GGGCCTGGTTGTGAATGCTC 61.599 60.000 0.84 0.00 0.00 4.26
2063 3510 1.187567 AAGGGCCTGGTTGTGAATGC 61.188 55.000 6.92 0.00 0.00 3.56
2064 3511 1.341080 AAAGGGCCTGGTTGTGAATG 58.659 50.000 6.92 0.00 0.00 2.67
2065 3512 2.990740 TAAAGGGCCTGGTTGTGAAT 57.009 45.000 6.92 0.00 0.00 2.57
2067 3514 2.312390 GTTTAAAGGGCCTGGTTGTGA 58.688 47.619 6.92 0.00 0.00 3.58
2068 3515 1.000717 CGTTTAAAGGGCCTGGTTGTG 60.001 52.381 6.92 0.00 0.00 3.33
2070 3517 1.324383 ACGTTTAAAGGGCCTGGTTG 58.676 50.000 6.92 0.00 0.00 3.77
2072 3519 1.612676 GAACGTTTAAAGGGCCTGGT 58.387 50.000 6.92 0.00 0.00 4.00
2073 3520 0.519961 CGAACGTTTAAAGGGCCTGG 59.480 55.000 6.92 0.00 0.00 4.45
2074 3521 0.519961 CCGAACGTTTAAAGGGCCTG 59.480 55.000 6.92 0.00 0.00 4.85
2075 3522 0.607217 CCCGAACGTTTAAAGGGCCT 60.607 55.000 15.64 0.00 35.09 5.19
2076 3523 1.878070 CCCGAACGTTTAAAGGGCC 59.122 57.895 15.64 0.00 35.09 5.80
2078 3525 1.498611 CGCCCGAACGTTTAAAGGG 59.501 57.895 20.63 20.63 44.72 3.95
2079 3526 1.498611 CCGCCCGAACGTTTAAAGG 59.501 57.895 0.46 6.36 0.00 3.11
2082 3529 2.280660 TGCCGCCCGAACGTTTAA 60.281 55.556 0.46 0.00 0.00 1.52
2094 3541 2.088674 ATAGTGATCGGGTCTGCCGC 62.089 60.000 0.00 0.00 34.97 6.53
2095 3542 0.319040 CATAGTGATCGGGTCTGCCG 60.319 60.000 0.00 0.00 34.97 5.69
2096 3543 0.753262 ACATAGTGATCGGGTCTGCC 59.247 55.000 0.00 0.00 0.00 4.85
2097 3544 3.944055 ATACATAGTGATCGGGTCTGC 57.056 47.619 0.00 0.00 0.00 4.26
2101 4624 4.649674 ACTGTGAATACATAGTGATCGGGT 59.350 41.667 0.00 0.00 44.49 5.28
2103 4626 7.492669 AGAAAACTGTGAATACATAGTGATCGG 59.507 37.037 0.00 0.00 45.21 4.18
2113 4636 6.206634 GGTTGGATGAGAAAACTGTGAATACA 59.793 38.462 0.00 0.00 35.08 2.29
2114 4637 6.612306 GGTTGGATGAGAAAACTGTGAATAC 58.388 40.000 0.00 0.00 0.00 1.89
2115 4638 5.411361 CGGTTGGATGAGAAAACTGTGAATA 59.589 40.000 0.00 0.00 0.00 1.75
2116 4639 4.216257 CGGTTGGATGAGAAAACTGTGAAT 59.784 41.667 0.00 0.00 0.00 2.57
2117 4640 3.563808 CGGTTGGATGAGAAAACTGTGAA 59.436 43.478 0.00 0.00 0.00 3.18
2120 4643 2.105821 TCCGGTTGGATGAGAAAACTGT 59.894 45.455 0.00 0.00 40.17 3.55
2121 4644 2.778299 TCCGGTTGGATGAGAAAACTG 58.222 47.619 0.00 0.00 40.17 3.16
2139 4662 1.674651 GGGCCGGTTTGAGAAGTCC 60.675 63.158 1.90 0.00 0.00 3.85
2140 4663 0.611714 TAGGGCCGGTTTGAGAAGTC 59.388 55.000 1.90 0.00 0.00 3.01
2141 4664 1.286248 ATAGGGCCGGTTTGAGAAGT 58.714 50.000 1.90 0.00 0.00 3.01
2142 4665 2.802057 CGTATAGGGCCGGTTTGAGAAG 60.802 54.545 1.90 0.00 0.00 2.85
2143 4666 1.137479 CGTATAGGGCCGGTTTGAGAA 59.863 52.381 1.90 0.00 0.00 2.87
2144 4667 0.748450 CGTATAGGGCCGGTTTGAGA 59.252 55.000 1.90 0.00 0.00 3.27
2151 4674 1.366366 CCTGAACGTATAGGGCCGG 59.634 63.158 0.00 0.00 0.00 6.13
2158 4681 1.470285 GCCGAACAGCCTGAACGTATA 60.470 52.381 0.00 0.00 0.00 1.47
2159 4682 0.739813 GCCGAACAGCCTGAACGTAT 60.740 55.000 0.00 0.00 0.00 3.06
2161 4684 2.665185 GCCGAACAGCCTGAACGT 60.665 61.111 0.00 0.00 0.00 3.99
2162 4685 2.664851 TGCCGAACAGCCTGAACG 60.665 61.111 0.00 3.48 0.00 3.95
2163 4686 2.617274 GGTGCCGAACAGCCTGAAC 61.617 63.158 0.00 0.00 41.06 3.18
2164 4687 2.281484 GGTGCCGAACAGCCTGAA 60.281 61.111 0.00 0.00 41.06 3.02
2169 4692 4.966787 TTGGGGGTGCCGAACAGC 62.967 66.667 0.00 0.00 46.36 4.40
2171 4694 2.203422 CTTTGGGGGTGCCGAACA 60.203 61.111 0.00 0.00 0.00 3.18
2172 4695 3.680786 GCTTTGGGGGTGCCGAAC 61.681 66.667 0.00 0.00 0.00 3.95
2173 4696 4.986708 GGCTTTGGGGGTGCCGAA 62.987 66.667 0.00 0.00 37.11 4.30
2176 4699 3.625897 GTTGGCTTTGGGGGTGCC 61.626 66.667 0.00 0.00 46.26 5.01
2183 4706 2.094078 CCCACATATGTGTTGGCTTTGG 60.094 50.000 29.25 18.60 44.21 3.28
2191 4714 0.332632 AGCTGCCCCACATATGTGTT 59.667 50.000 29.25 3.88 44.21 3.32
2192 4715 1.212375 TAGCTGCCCCACATATGTGT 58.788 50.000 29.25 14.74 44.21 3.72
2194 4717 1.074405 CCATAGCTGCCCCACATATGT 59.926 52.381 1.41 1.41 0.00 2.29
2222 4745 4.176851 GGACGAGCGGACGAGTCC 62.177 72.222 12.07 12.07 45.07 3.85
2223 4746 2.649843 GATGGACGAGCGGACGAGTC 62.650 65.000 7.83 1.64 37.03 3.36
2224 4747 2.750637 ATGGACGAGCGGACGAGT 60.751 61.111 7.83 0.00 37.03 4.18
2225 4748 2.024871 GATGGACGAGCGGACGAG 59.975 66.667 7.83 0.00 37.03 4.18
2226 4749 3.872728 CGATGGACGAGCGGACGA 61.873 66.667 7.83 0.00 45.77 4.20
2239 4762 1.209127 GTTTTGACGTGGGCCGATG 59.791 57.895 5.27 5.27 40.70 3.84
2240 4763 1.228003 TGTTTTGACGTGGGCCGAT 60.228 52.632 0.00 0.00 40.70 4.18
2244 4767 0.385473 CGATGTGTTTTGACGTGGGC 60.385 55.000 0.00 0.00 0.00 5.36
2248 4771 2.803956 CCTAACCGATGTGTTTTGACGT 59.196 45.455 0.00 0.00 0.00 4.34
2250 4773 2.412325 CGCCTAACCGATGTGTTTTGAC 60.412 50.000 0.00 0.00 0.00 3.18
2262 4785 1.067582 GGAGATGTCCGCCTAACCG 59.932 63.158 0.00 0.00 31.37 4.44
2288 4811 3.393800 GGTCATGAATGTATCCTCACCG 58.606 50.000 0.00 0.00 0.00 4.94
2349 4873 1.546589 ATGCCCCGTTGTCCGACTTA 61.547 55.000 0.00 0.00 39.56 2.24
2353 4877 2.046700 GAATGCCCCGTTGTCCGA 60.047 61.111 0.00 0.00 39.56 4.55
2354 4878 2.246761 TAGGAATGCCCCGTTGTCCG 62.247 60.000 0.00 0.00 34.66 4.79
2369 4893 0.772124 GAATGGGGATGGGGCTAGGA 60.772 60.000 0.00 0.00 0.00 2.94
2379 4903 0.104197 GAGAGGAGGGGAATGGGGAT 60.104 60.000 0.00 0.00 0.00 3.85
2380 4904 1.318380 GAGAGGAGGGGAATGGGGA 59.682 63.158 0.00 0.00 0.00 4.81
2393 4917 3.151022 GCAGACGGGAGGGAGAGG 61.151 72.222 0.00 0.00 0.00 3.69
2394 4918 2.363018 TGCAGACGGGAGGGAGAG 60.363 66.667 0.00 0.00 0.00 3.20
2399 4923 2.266055 GAAGGTGCAGACGGGAGG 59.734 66.667 0.00 0.00 0.00 4.30
2412 4936 3.080121 AGGAGGGAGCAGCGAAGG 61.080 66.667 0.00 0.00 0.00 3.46
2417 4941 1.076044 AGAGAGAGGAGGGAGCAGC 60.076 63.158 0.00 0.00 0.00 5.25
2418 4942 0.258484 TGAGAGAGAGGAGGGAGCAG 59.742 60.000 0.00 0.00 0.00 4.24
2421 4945 0.106217 GGGTGAGAGAGAGGAGGGAG 60.106 65.000 0.00 0.00 0.00 4.30
2424 4948 1.454847 CCGGGTGAGAGAGAGGAGG 60.455 68.421 0.00 0.00 0.00 4.30
2426 4950 1.303615 GACCGGGTGAGAGAGAGGA 59.696 63.158 3.30 0.00 0.00 3.71
2428 4952 0.750182 GAGGACCGGGTGAGAGAGAG 60.750 65.000 3.30 0.00 0.00 3.20
2429 4953 1.208844 AGAGGACCGGGTGAGAGAGA 61.209 60.000 3.30 0.00 0.00 3.10
2430 4954 0.323908 AAGAGGACCGGGTGAGAGAG 60.324 60.000 3.30 0.00 0.00 3.20
2431 4955 0.323542 GAAGAGGACCGGGTGAGAGA 60.324 60.000 3.30 0.00 0.00 3.10
2432 4956 1.324005 GGAAGAGGACCGGGTGAGAG 61.324 65.000 3.30 0.00 0.00 3.20
2433 4957 1.305046 GGAAGAGGACCGGGTGAGA 60.305 63.158 3.30 0.00 0.00 3.27
2434 4958 1.609501 TGGAAGAGGACCGGGTGAG 60.610 63.158 3.30 0.00 0.00 3.51
2435 4959 1.911766 GTGGAAGAGGACCGGGTGA 60.912 63.158 3.30 0.00 0.00 4.02
2436 4960 1.481056 AAGTGGAAGAGGACCGGGTG 61.481 60.000 3.30 0.00 0.00 4.61
2437 4961 1.152096 AAGTGGAAGAGGACCGGGT 60.152 57.895 6.32 0.00 0.00 5.28
2438 4962 1.597461 GAAGTGGAAGAGGACCGGG 59.403 63.158 6.32 0.00 0.00 5.73
2439 4963 1.192146 TGGAAGTGGAAGAGGACCGG 61.192 60.000 0.00 0.00 0.00 5.28
2440 4964 0.685097 TTGGAAGTGGAAGAGGACCG 59.315 55.000 0.00 0.00 0.00 4.79
2441 4965 2.356227 GGATTGGAAGTGGAAGAGGACC 60.356 54.545 0.00 0.00 0.00 4.46
2442 4966 2.305927 TGGATTGGAAGTGGAAGAGGAC 59.694 50.000 0.00 0.00 0.00 3.85
2443 4967 2.631384 TGGATTGGAAGTGGAAGAGGA 58.369 47.619 0.00 0.00 0.00 3.71
2462 4986 1.294659 GAGGACTGACGGCAAGCTTG 61.295 60.000 22.44 22.44 0.00 4.01
2463 4987 1.004440 GAGGACTGACGGCAAGCTT 60.004 57.895 0.00 0.00 0.00 3.74
2465 4989 2.811317 CGAGGACTGACGGCAAGC 60.811 66.667 0.00 0.00 0.00 4.01
2470 4994 2.105128 GATGGCGAGGACTGACGG 59.895 66.667 0.00 0.00 0.00 4.79
2505 5029 1.196808 GTAATGCGTCACCTTGGTGTG 59.803 52.381 18.05 13.21 37.59 3.82
2508 5032 2.151202 CTTGTAATGCGTCACCTTGGT 58.849 47.619 0.00 0.00 0.00 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.