Multiple sequence alignment - TraesCS5D01G065400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G065400 chr5D 100.000 3421 0 0 841 4261 60892442 60895862 0.000000e+00 6318
1 TraesCS5D01G065400 chr5D 100.000 592 0 0 1 592 60891602 60892193 0.000000e+00 1094
2 TraesCS5D01G065400 chr5B 89.714 2100 130 30 2114 4178 69862570 69860522 0.000000e+00 2603
3 TraesCS5D01G065400 chr5B 90.115 1305 71 22 841 2115 69863889 69862613 0.000000e+00 1642
4 TraesCS5D01G065400 chr5A 92.849 1734 77 19 2114 3823 50740624 50742334 0.000000e+00 2471
5 TraesCS5D01G065400 chr5A 91.647 1281 89 10 841 2115 50739309 50740577 0.000000e+00 1757
6 TraesCS5D01G065400 chr5A 84.375 352 45 2 91 432 50737371 50737722 1.900000e-88 337
7 TraesCS5D01G065400 chr5A 78.054 442 49 11 3834 4261 50742381 50742788 7.120000e-58 235


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G065400 chr5D 60891602 60895862 4260 False 3706.0 6318 100.00000 1 4261 2 chr5D.!!$F1 4260
1 TraesCS5D01G065400 chr5B 69860522 69863889 3367 True 2122.5 2603 89.91450 841 4178 2 chr5B.!!$R1 3337
2 TraesCS5D01G065400 chr5A 50737371 50742788 5417 False 1200.0 2471 86.73125 91 4261 4 chr5A.!!$F1 4170

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
198 209 0.027586 AGAAACTTGTTGCGCGTGTC 59.972 50.0 8.43 0.00 0.00 3.67 F
234 245 0.107410 TGTTGTCTTGGTGAAGCGGT 60.107 50.0 0.00 0.00 0.00 5.68 F
552 575 0.175073 ATTTAGACGCCGACTCCACC 59.825 55.0 0.00 0.00 0.00 4.61 F
578 741 0.237761 GCATCATGAGCTCCATTCGC 59.762 55.0 12.15 5.00 31.94 4.70 F
588 751 0.240945 CTCCATTCGCCGCTGTTTTT 59.759 50.0 0.00 0.00 0.00 1.94 F
1192 2393 0.397394 TGGATCCGTTCCCGTCCATA 60.397 55.0 7.39 0.00 44.77 2.74 F
1366 2571 0.399075 AATTCCCGGGACTCGTGTTT 59.601 50.0 26.87 5.53 37.11 2.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1573 2782 0.251354 CAGTATGGCTCAGGTGCAGT 59.749 55.000 0.00 0.00 34.04 4.40 R
1930 3150 0.398696 ATGTAAGTGGGCCGTGTTCA 59.601 50.000 0.00 0.00 0.00 3.18 R
2499 3773 0.394352 CCAGGAAACCGGCAGCTTAT 60.394 55.000 0.00 0.00 0.00 1.73 R
2513 3787 2.372504 TCCAAAATACACCGAACCAGGA 59.627 45.455 0.00 0.00 34.73 3.86 R
2610 3885 9.952030 TCACTTCCAACAACATTAATAGATACA 57.048 29.630 0.00 0.00 0.00 2.29 R
3015 4290 1.303309 CCAATCCAGTCTCGGCATTC 58.697 55.000 0.00 0.00 0.00 2.67 R
3280 4570 1.535462 GGTTCTTGGGAATGACACGTG 59.465 52.381 15.48 15.48 33.71 4.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.347958 GCGACTTTGGTCATGTTTTCA 57.652 42.857 0.00 0.00 42.21 2.69
21 22 3.701241 GCGACTTTGGTCATGTTTTCAA 58.299 40.909 0.00 0.00 42.21 2.69
22 23 4.109050 GCGACTTTGGTCATGTTTTCAAA 58.891 39.130 0.00 0.00 42.21 2.69
23 24 4.744631 GCGACTTTGGTCATGTTTTCAAAT 59.255 37.500 0.00 0.00 42.21 2.32
24 25 5.332506 GCGACTTTGGTCATGTTTTCAAATG 60.333 40.000 0.00 0.00 42.21 2.32
25 26 5.175491 CGACTTTGGTCATGTTTTCAAATGG 59.825 40.000 0.00 0.00 42.21 3.16
26 27 4.815846 ACTTTGGTCATGTTTTCAAATGGC 59.184 37.500 0.00 0.00 0.00 4.40
27 28 4.412796 TTGGTCATGTTTTCAAATGGCA 57.587 36.364 0.00 0.00 29.77 4.92
28 29 3.726607 TGGTCATGTTTTCAAATGGCAC 58.273 40.909 0.00 0.00 29.77 5.01
49 50 3.083997 GGACACCGCCTCCTGGAT 61.084 66.667 0.00 0.00 34.57 3.41
50 51 2.187946 GACACCGCCTCCTGGATG 59.812 66.667 0.00 0.00 34.57 3.51
51 52 2.607750 ACACCGCCTCCTGGATGT 60.608 61.111 0.00 0.00 34.57 3.06
52 53 1.305802 ACACCGCCTCCTGGATGTA 60.306 57.895 0.00 0.00 34.57 2.29
53 54 1.144057 CACCGCCTCCTGGATGTAC 59.856 63.158 0.00 0.00 34.57 2.90
54 55 1.001760 ACCGCCTCCTGGATGTACT 59.998 57.895 0.00 0.00 34.57 2.73
55 56 0.617820 ACCGCCTCCTGGATGTACTT 60.618 55.000 0.00 0.00 34.57 2.24
56 57 0.179073 CCGCCTCCTGGATGTACTTG 60.179 60.000 0.00 0.00 34.57 3.16
57 58 0.179073 CGCCTCCTGGATGTACTTGG 60.179 60.000 0.00 0.00 34.57 3.61
58 59 1.204146 GCCTCCTGGATGTACTTGGA 58.796 55.000 0.00 0.00 34.57 3.53
59 60 1.771255 GCCTCCTGGATGTACTTGGAT 59.229 52.381 0.00 0.00 34.57 3.41
60 61 2.486191 GCCTCCTGGATGTACTTGGATG 60.486 54.545 0.00 0.00 34.57 3.51
61 62 2.486191 CCTCCTGGATGTACTTGGATGC 60.486 54.545 0.00 0.00 34.57 3.91
62 63 2.171237 CTCCTGGATGTACTTGGATGCA 59.829 50.000 0.00 0.00 0.00 3.96
63 64 2.092968 TCCTGGATGTACTTGGATGCAC 60.093 50.000 0.00 0.00 0.00 4.57
64 65 2.092753 CCTGGATGTACTTGGATGCACT 60.093 50.000 0.00 0.00 0.00 4.40
65 66 3.134623 CCTGGATGTACTTGGATGCACTA 59.865 47.826 0.00 0.00 0.00 2.74
66 67 4.122776 CTGGATGTACTTGGATGCACTAC 58.877 47.826 0.00 0.00 0.00 2.73
67 68 3.123804 GGATGTACTTGGATGCACTACG 58.876 50.000 0.00 0.00 0.00 3.51
68 69 3.430374 GGATGTACTTGGATGCACTACGT 60.430 47.826 0.00 0.00 0.00 3.57
69 70 2.954316 TGTACTTGGATGCACTACGTG 58.046 47.619 0.00 0.00 36.51 4.49
70 71 2.559231 TGTACTTGGATGCACTACGTGA 59.441 45.455 0.00 0.00 35.23 4.35
71 72 2.080286 ACTTGGATGCACTACGTGAC 57.920 50.000 0.00 0.00 35.23 3.67
72 73 1.618837 ACTTGGATGCACTACGTGACT 59.381 47.619 0.00 0.00 35.23 3.41
73 74 1.995484 CTTGGATGCACTACGTGACTG 59.005 52.381 0.00 0.00 35.23 3.51
74 75 0.246360 TGGATGCACTACGTGACTGG 59.754 55.000 0.00 0.00 35.23 4.00
75 76 0.530744 GGATGCACTACGTGACTGGA 59.469 55.000 0.00 0.00 35.23 3.86
76 77 1.630148 GATGCACTACGTGACTGGAC 58.370 55.000 0.00 0.00 35.23 4.02
77 78 0.246635 ATGCACTACGTGACTGGACC 59.753 55.000 0.00 0.00 35.23 4.46
78 79 1.110518 TGCACTACGTGACTGGACCA 61.111 55.000 0.00 0.00 35.23 4.02
79 80 0.388649 GCACTACGTGACTGGACCAG 60.389 60.000 20.45 20.45 35.23 4.00
80 81 1.244816 CACTACGTGACTGGACCAGA 58.755 55.000 28.56 3.29 35.23 3.86
81 82 1.611977 CACTACGTGACTGGACCAGAA 59.388 52.381 28.56 12.72 35.23 3.02
82 83 1.887198 ACTACGTGACTGGACCAGAAG 59.113 52.381 28.56 16.51 35.18 2.85
83 84 1.887198 CTACGTGACTGGACCAGAAGT 59.113 52.381 28.56 20.69 35.18 3.01
84 85 0.389391 ACGTGACTGGACCAGAAGTG 59.611 55.000 28.56 16.04 35.18 3.16
103 104 0.957395 GGAGTGCCACATGTGACTGG 60.957 60.000 27.46 11.59 0.00 4.00
113 114 1.086067 ATGTGACTGGCGAAGATGCG 61.086 55.000 0.00 0.00 35.06 4.73
116 117 0.528466 TGACTGGCGAAGATGCGATC 60.528 55.000 0.00 0.00 35.06 3.69
122 123 2.639926 CGAAGATGCGATCGCGGTC 61.640 63.158 32.64 29.90 45.51 4.79
126 127 2.278857 ATGCGATCGCGGTCAGAC 60.279 61.111 32.64 8.65 45.51 3.51
127 128 2.936829 GATGCGATCGCGGTCAGACA 62.937 60.000 32.64 14.38 45.51 3.41
128 129 2.278857 GCGATCGCGGTCAGACAT 60.279 61.111 26.12 0.00 38.16 3.06
159 160 2.496942 CACCCCATGCATCTTGACC 58.503 57.895 0.00 0.00 0.00 4.02
175 177 3.593442 TGACCACCAAATCCAAGAAGT 57.407 42.857 0.00 0.00 0.00 3.01
177 179 4.285863 TGACCACCAAATCCAAGAAGTTT 58.714 39.130 0.00 0.00 0.00 2.66
181 183 4.584325 CCACCAAATCCAAGAAGTTTGAGA 59.416 41.667 0.00 0.00 35.43 3.27
198 209 0.027586 AGAAACTTGTTGCGCGTGTC 59.972 50.000 8.43 0.00 0.00 3.67
211 222 1.865865 GCGTGTCAGAGAGGAACAAA 58.134 50.000 0.00 0.00 0.00 2.83
234 245 0.107410 TGTTGTCTTGGTGAAGCGGT 60.107 50.000 0.00 0.00 0.00 5.68
256 267 2.540515 GACCACGACGATGATCATGTT 58.459 47.619 14.30 0.00 0.00 2.71
261 272 2.604914 ACGACGATGATCATGTTGAAGC 59.395 45.455 14.30 0.00 0.00 3.86
262 273 2.033407 CGACGATGATCATGTTGAAGCC 60.033 50.000 14.30 0.00 0.00 4.35
264 275 1.935873 CGATGATCATGTTGAAGCCGT 59.064 47.619 14.30 0.00 0.00 5.68
279 290 2.613506 CCGTCGGACTTGGGCAAAC 61.614 63.158 4.91 0.00 0.00 2.93
283 294 0.821711 TCGGACTTGGGCAAACCTTG 60.822 55.000 0.00 0.00 41.11 3.61
315 326 2.284625 TGAGGTCGGTCCATGGCT 60.285 61.111 6.96 0.00 39.02 4.75
331 342 2.032528 CTCTTCCGGCACTGGCAA 59.967 61.111 0.00 0.00 43.71 4.52
334 345 3.551496 CTTCCGGCACTGGCAAGGA 62.551 63.158 0.00 0.00 43.55 3.36
367 378 1.444119 GCTGGTTTGGTGTGCTCGAA 61.444 55.000 0.00 0.00 0.00 3.71
370 381 1.021968 GGTTTGGTGTGCTCGAACTT 58.978 50.000 0.00 0.00 0.00 2.66
372 383 2.223377 GGTTTGGTGTGCTCGAACTTAG 59.777 50.000 0.00 0.00 0.00 2.18
383 394 2.483877 CTCGAACTTAGCATGTTGGCAA 59.516 45.455 0.00 0.00 35.83 4.52
395 406 1.142748 TTGGCAAACAAAGCACCGG 59.857 52.632 0.00 0.00 35.79 5.28
396 407 2.661537 GGCAAACAAAGCACCGGC 60.662 61.111 0.00 0.00 41.61 6.13
412 423 1.982913 CCGGCGAACAAAATTGTAAGC 59.017 47.619 9.30 13.89 41.31 3.09
419 430 5.270083 CGAACAAAATTGTAAGCACACAGA 58.730 37.500 0.00 0.00 41.31 3.41
423 434 1.826385 ATTGTAAGCACACAGAGCCC 58.174 50.000 0.00 0.00 33.30 5.19
424 435 0.472044 TTGTAAGCACACAGAGCCCA 59.528 50.000 0.00 0.00 33.30 5.36
432 443 2.842462 ACAGAGCCCACGACACCA 60.842 61.111 0.00 0.00 0.00 4.17
433 444 2.217038 ACAGAGCCCACGACACCAT 61.217 57.895 0.00 0.00 0.00 3.55
434 445 0.902984 ACAGAGCCCACGACACCATA 60.903 55.000 0.00 0.00 0.00 2.74
441 452 1.538204 CCCACGACACCATATCCTTCG 60.538 57.143 0.00 0.00 35.80 3.79
443 454 0.248907 ACGACACCATATCCTTCGCG 60.249 55.000 0.00 0.00 32.91 5.87
444 455 1.548973 CGACACCATATCCTTCGCGC 61.549 60.000 0.00 0.00 0.00 6.86
446 457 1.227527 CACCATATCCTTCGCGCCA 60.228 57.895 0.00 0.00 0.00 5.69
447 458 1.069765 ACCATATCCTTCGCGCCAG 59.930 57.895 0.00 0.00 0.00 4.85
448 459 1.367471 CCATATCCTTCGCGCCAGA 59.633 57.895 0.00 0.00 0.00 3.86
449 460 0.946221 CCATATCCTTCGCGCCAGAC 60.946 60.000 0.00 0.00 0.00 3.51
474 497 3.681835 GGCGGTGAGGACGACTGT 61.682 66.667 0.00 0.00 36.18 3.55
480 503 2.478031 CGGTGAGGACGACTGTTCTATG 60.478 54.545 0.00 0.00 32.58 2.23
481 504 2.531206 GTGAGGACGACTGTTCTATGC 58.469 52.381 0.00 0.00 32.58 3.14
484 507 1.146358 GGACGACTGTTCTATGCGGC 61.146 60.000 0.00 0.00 0.00 6.53
486 509 1.065102 GACGACTGTTCTATGCGGCTA 59.935 52.381 0.00 0.00 0.00 3.93
488 511 2.054363 CGACTGTTCTATGCGGCTATG 58.946 52.381 0.00 0.00 0.00 2.23
526 549 3.532155 CCGGCTCCTCCTTCTCGG 61.532 72.222 0.00 0.00 0.00 4.63
530 553 1.068921 GCTCCTCCTTCTCGGCATC 59.931 63.158 0.00 0.00 0.00 3.91
532 555 1.001631 TCCTCCTTCTCGGCATCCA 59.998 57.895 0.00 0.00 0.00 3.41
537 560 3.433598 CCTCCTTCTCGGCATCCAATTTA 60.434 47.826 0.00 0.00 0.00 1.40
541 564 2.821546 TCTCGGCATCCAATTTAGACG 58.178 47.619 0.00 0.00 0.00 4.18
543 566 0.307760 CGGCATCCAATTTAGACGCC 59.692 55.000 2.84 2.84 34.68 5.68
545 568 1.295792 GCATCCAATTTAGACGCCGA 58.704 50.000 0.00 0.00 0.00 5.54
546 569 1.003866 GCATCCAATTTAGACGCCGAC 60.004 52.381 0.00 0.00 0.00 4.79
547 570 2.550978 CATCCAATTTAGACGCCGACT 58.449 47.619 0.00 0.00 0.00 4.18
548 571 2.288961 TCCAATTTAGACGCCGACTC 57.711 50.000 0.00 0.00 0.00 3.36
549 572 1.134907 TCCAATTTAGACGCCGACTCC 60.135 52.381 0.00 0.00 0.00 3.85
552 575 0.175073 ATTTAGACGCCGACTCCACC 59.825 55.000 0.00 0.00 0.00 4.61
553 576 0.896940 TTTAGACGCCGACTCCACCT 60.897 55.000 0.00 0.00 0.00 4.00
554 577 0.896940 TTAGACGCCGACTCCACCTT 60.897 55.000 0.00 0.00 0.00 3.50
556 579 3.644399 GACGCCGACTCCACCTTCC 62.644 68.421 0.00 0.00 0.00 3.46
557 580 4.452733 CGCCGACTCCACCTTCCC 62.453 72.222 0.00 0.00 0.00 3.97
559 582 3.771160 CCGACTCCACCTTCCCGG 61.771 72.222 0.00 0.00 39.35 5.73
560 583 4.452733 CGACTCCACCTTCCCGGC 62.453 72.222 0.00 0.00 35.61 6.13
571 734 0.883814 CTTCCCGGCATCATGAGCTC 60.884 60.000 6.82 6.82 0.00 4.09
572 735 2.281345 CCCGGCATCATGAGCTCC 60.281 66.667 12.15 8.33 0.00 4.70
573 736 2.507452 CCGGCATCATGAGCTCCA 59.493 61.111 12.15 0.00 0.00 3.86
576 739 0.873054 CGGCATCATGAGCTCCATTC 59.127 55.000 12.15 0.00 31.94 2.67
578 741 0.237761 GCATCATGAGCTCCATTCGC 59.762 55.000 12.15 5.00 31.94 4.70
579 742 0.873054 CATCATGAGCTCCATTCGCC 59.127 55.000 12.15 0.00 31.94 5.54
581 744 2.590007 ATGAGCTCCATTCGCCGC 60.590 61.111 12.15 0.00 29.34 6.53
582 745 3.099211 ATGAGCTCCATTCGCCGCT 62.099 57.895 12.15 0.00 35.03 5.52
583 746 3.267860 GAGCTCCATTCGCCGCTG 61.268 66.667 0.87 0.00 31.96 5.18
585 748 3.127533 GCTCCATTCGCCGCTGTT 61.128 61.111 0.00 0.00 0.00 3.16
586 749 2.690778 GCTCCATTCGCCGCTGTTT 61.691 57.895 0.00 0.00 0.00 2.83
587 750 1.875963 CTCCATTCGCCGCTGTTTT 59.124 52.632 0.00 0.00 0.00 2.43
588 751 0.240945 CTCCATTCGCCGCTGTTTTT 59.759 50.000 0.00 0.00 0.00 1.94
861 2053 4.866224 CGTGCACCACCACCACCA 62.866 66.667 12.15 0.00 32.10 4.17
862 2054 3.216292 GTGCACCACCACCACCAC 61.216 66.667 5.22 0.00 0.00 4.16
863 2055 4.514585 TGCACCACCACCACCACC 62.515 66.667 0.00 0.00 0.00 4.61
987 2187 3.151022 CTCCTCCCCGTGCTCCTC 61.151 72.222 0.00 0.00 0.00 3.71
1081 2282 2.183679 CTGCTACTTTCTCCTCCCAGT 58.816 52.381 0.00 0.00 0.00 4.00
1168 2369 1.448540 CGCGGATTTGCTCTCTGGT 60.449 57.895 0.00 0.00 0.00 4.00
1192 2393 0.397394 TGGATCCGTTCCCGTCCATA 60.397 55.000 7.39 0.00 44.77 2.74
1224 2425 0.827368 GAATCTGGTCTTCTCCGGCT 59.173 55.000 0.00 0.00 34.12 5.52
1275 2479 0.865769 CAAGTGCGTGTGTTAGGGTC 59.134 55.000 0.00 0.00 0.00 4.46
1295 2499 0.894835 TGGACTACTGCTGCGAATGA 59.105 50.000 0.00 0.00 0.00 2.57
1366 2571 0.399075 AATTCCCGGGACTCGTGTTT 59.601 50.000 26.87 5.53 37.11 2.83
1377 2582 1.393597 CTCGTGTTTAGGTCGTCGCG 61.394 60.000 0.00 0.00 35.57 5.87
1396 2601 2.223112 GCGTTCATGCTTCATGGTAGTG 60.223 50.000 6.92 0.00 41.66 2.74
1403 2608 6.941857 TCATGCTTCATGGTAGTGTAAGTTA 58.058 36.000 6.92 0.00 41.66 2.24
1407 2612 6.014925 TGCTTCATGGTAGTGTAAGTTACTGA 60.015 38.462 14.00 4.94 0.00 3.41
1408 2613 6.872020 GCTTCATGGTAGTGTAAGTTACTGAA 59.128 38.462 14.00 11.54 0.00 3.02
1409 2614 7.063544 GCTTCATGGTAGTGTAAGTTACTGAAG 59.936 40.741 22.39 22.39 36.34 3.02
1410 2615 7.770366 TCATGGTAGTGTAAGTTACTGAAGA 57.230 36.000 14.00 0.06 0.00 2.87
1498 2704 0.813184 CCTGGCACATTAGGCAACAG 59.187 55.000 0.00 0.00 43.93 3.16
1518 2724 2.069273 GATAATGTTCCGATGGCGAGG 58.931 52.381 0.00 0.00 40.82 4.63
1519 2725 0.531974 TAATGTTCCGATGGCGAGGC 60.532 55.000 0.00 0.00 40.82 4.70
1542 2751 2.228343 ACTACGAGGAAGTGGTCTTTCG 59.772 50.000 0.00 0.00 38.83 3.46
1555 2764 1.988467 GTCTTTCGTAGGTTGCGGTAC 59.012 52.381 0.00 0.00 0.00 3.34
1624 2835 0.456824 CACTAGCATGACGACGCTGT 60.457 55.000 0.00 0.00 39.30 4.40
1637 2848 0.808125 ACGCTGTGTTGCTTGTTTGA 59.192 45.000 0.00 0.00 0.00 2.69
1683 2894 5.661312 AGTCCATAGCTGTTGGTAATCTGTA 59.339 40.000 15.00 0.00 35.64 2.74
1765 2976 2.824071 GAATTTGCTGCTGGTGCCGG 62.824 60.000 0.00 0.00 38.71 6.13
1805 3016 2.430465 ACATGGACTAGCTTTGTGCAG 58.570 47.619 16.06 11.60 45.94 4.41
1822 3041 1.689273 GCAGAGTGGTGGTAGATAGGG 59.311 57.143 0.00 0.00 0.00 3.53
1928 3148 7.836685 ACTAGCATGTATACTATGATACTGGCT 59.163 37.037 15.29 13.23 41.25 4.75
1930 3150 6.438741 AGCATGTATACTATGATACTGGCTGT 59.561 38.462 15.29 1.74 39.12 4.40
1938 3158 1.337728 TGATACTGGCTGTGAACACGG 60.338 52.381 7.34 9.14 40.59 4.94
2032 3255 5.387113 AATGTGTTCCCCATCTATGCTTA 57.613 39.130 0.00 0.00 0.00 3.09
2043 3266 6.266103 CCCCATCTATGCTTATTTGTTGTCAT 59.734 38.462 0.00 0.00 0.00 3.06
2071 3294 2.292828 ATAGTTTGTTGGCAGCTGGT 57.707 45.000 17.12 0.00 0.00 4.00
2099 3322 4.016444 TGTTCTGGGAAATTCACTATGCC 58.984 43.478 0.00 0.00 0.00 4.40
2248 3520 9.301153 CCTTTTGGAAATACAGGAATAAAATCG 57.699 33.333 0.00 0.00 44.07 3.34
2293 3567 8.237949 GCTATACAAGCGAGTAATCTTCTGATA 58.762 37.037 0.00 0.00 42.53 2.15
2299 3573 5.759273 AGCGAGTAATCTTCTGATACTACGT 59.241 40.000 0.00 0.00 31.70 3.57
2449 3723 6.292150 GTTATCTACTGGCTCCTAATTGCTT 58.708 40.000 0.00 0.00 0.00 3.91
2452 3726 6.102897 TCTACTGGCTCCTAATTGCTTATC 57.897 41.667 0.00 0.00 0.00 1.75
2465 3739 4.481930 TTGCTTATCGGAACAACTTGTG 57.518 40.909 0.00 0.00 0.00 3.33
2499 3773 7.928908 CTGCAAGCAGAACTAAAATTGTTAA 57.071 32.000 16.75 0.00 46.30 2.01
2511 3785 5.400066 AAAATTGTTAATAAGCTGCCGGT 57.600 34.783 1.90 0.00 0.00 5.28
2513 3787 5.400066 AATTGTTAATAAGCTGCCGGTTT 57.600 34.783 1.90 0.00 32.30 3.27
2522 3796 2.281208 TGCCGGTTTCCTGGTTCG 60.281 61.111 1.90 0.00 0.00 3.95
2542 3816 6.310224 GGTTCGGTGTATTTTGGATGAAATTG 59.690 38.462 0.00 0.00 31.96 2.32
2610 3885 4.519350 CAGATTTGATGATGTGCCTATGCT 59.481 41.667 0.00 0.00 38.71 3.79
2851 4126 7.925483 CCACTGACCATTGTTTTCTTGAAATAA 59.075 33.333 0.00 0.00 33.66 1.40
2862 4137 8.538856 TGTTTTCTTGAAATAAGATTTGTTGCG 58.461 29.630 0.00 0.00 0.00 4.85
2872 4147 4.474226 AGATTTGTTGCGTTTCTGAGTC 57.526 40.909 0.00 0.00 0.00 3.36
2880 4155 1.193426 GCGTTTCTGAGTCTGTGCTTC 59.807 52.381 0.00 0.00 0.00 3.86
2899 4174 8.650490 TGTGCTTCCTTGTTGATCTATATATGA 58.350 33.333 0.00 0.00 0.00 2.15
2925 4200 2.284625 ACTGTCCATGAGGGCCGA 60.285 61.111 0.00 0.00 39.40 5.54
3015 4290 4.516321 TCAAGAATCAACATGACCTGTGTG 59.484 41.667 0.00 0.00 38.39 3.82
3050 4340 2.768253 TTGGTATGGCACTGTCTCTG 57.232 50.000 0.00 0.00 0.00 3.35
3051 4341 1.644509 TGGTATGGCACTGTCTCTGT 58.355 50.000 0.00 0.00 0.00 3.41
3052 4342 1.276138 TGGTATGGCACTGTCTCTGTG 59.724 52.381 0.00 3.12 36.59 3.66
3053 4343 1.550524 GGTATGGCACTGTCTCTGTGA 59.449 52.381 10.12 0.00 35.76 3.58
3054 4344 2.611518 GTATGGCACTGTCTCTGTGAC 58.388 52.381 10.12 8.01 45.54 3.67
3055 4345 0.322975 ATGGCACTGTCTCTGTGACC 59.677 55.000 7.34 10.07 44.75 4.02
3056 4346 1.004440 GGCACTGTCTCTGTGACCC 60.004 63.158 7.34 0.00 44.75 4.46
3057 4347 1.004440 GCACTGTCTCTGTGACCCC 60.004 63.158 7.34 0.00 44.75 4.95
3058 4348 1.476007 GCACTGTCTCTGTGACCCCT 61.476 60.000 7.34 0.00 44.75 4.79
3059 4349 0.319728 CACTGTCTCTGTGACCCCTG 59.680 60.000 7.34 0.00 44.75 4.45
3060 4350 0.188587 ACTGTCTCTGTGACCCCTGA 59.811 55.000 7.34 0.00 44.75 3.86
3061 4351 1.342074 CTGTCTCTGTGACCCCTGAA 58.658 55.000 7.34 0.00 44.75 3.02
3062 4352 1.001406 CTGTCTCTGTGACCCCTGAAC 59.999 57.143 7.34 0.00 44.75 3.18
3063 4353 0.038159 GTCTCTGTGACCCCTGAACG 60.038 60.000 0.00 0.00 39.69 3.95
3064 4354 0.469331 TCTCTGTGACCCCTGAACGT 60.469 55.000 0.00 0.00 0.00 3.99
3089 4379 6.406370 TGTATATCCACTTGTTCTCCTTGTG 58.594 40.000 0.00 0.00 0.00 3.33
3272 4562 2.751166 TCTACTGAAGGAGCACTTGC 57.249 50.000 0.00 0.00 40.21 4.01
3275 4565 1.302033 CTGAAGGAGCACTTGCCGT 60.302 57.895 0.00 0.00 40.21 5.68
3280 4570 4.077188 GAGCACTTGCCGTGTCGC 62.077 66.667 0.00 0.00 45.57 5.19
3406 4696 3.531538 TGGTTCTTGTGTGTCTTGTCTC 58.468 45.455 0.00 0.00 0.00 3.36
3424 4714 5.068636 TGTCTCGTTATATCTCCTGGGTAC 58.931 45.833 0.00 0.00 0.00 3.34
3541 4831 4.798387 GCTGTTTGGTTGTTTTGTCTGTAG 59.202 41.667 0.00 0.00 0.00 2.74
3553 4843 4.873746 TTGTCTGTAGAACCTTCTCCTG 57.126 45.455 0.00 0.00 38.70 3.86
3554 4844 3.165875 TGTCTGTAGAACCTTCTCCTGG 58.834 50.000 0.00 0.00 38.70 4.45
3563 4859 3.790089 ACCTTCTCCTGGTTAAACCTG 57.210 47.619 0.00 0.00 39.58 4.00
3614 4911 2.987413 TGCCAATGTTTTGCTCTACG 57.013 45.000 0.00 0.00 0.00 3.51
3641 4938 8.531982 TGATGGATGTTAAGACAGTATATAGGC 58.468 37.037 0.00 0.00 39.58 3.93
3654 4952 6.042777 CAGTATATAGGCCGAATGGTATGTG 58.957 44.000 0.00 0.00 37.67 3.21
3742 5055 8.579682 AATTGCACAGTTCTTTAACAAATCTC 57.420 30.769 0.00 0.00 38.12 2.75
3750 5063 9.657121 CAGTTCTTTAACAAATCTCTCTGTTTC 57.343 33.333 0.00 0.00 38.12 2.78
3768 5081 7.930217 TCTGTTTCTGTTTCTCACTTAATTGG 58.070 34.615 0.00 0.00 0.00 3.16
3772 5085 5.869579 TCTGTTTCTCACTTAATTGGAGCT 58.130 37.500 0.00 0.00 0.00 4.09
3773 5086 6.299141 TCTGTTTCTCACTTAATTGGAGCTT 58.701 36.000 0.00 0.00 0.00 3.74
3774 5087 6.772716 TCTGTTTCTCACTTAATTGGAGCTTT 59.227 34.615 0.00 0.00 0.00 3.51
3832 5154 2.354510 CGCCCACAACATATAACACTGG 59.645 50.000 0.00 0.00 0.00 4.00
3842 5164 8.458843 ACAACATATAACACTGGTTATGCTTTC 58.541 33.333 9.67 0.00 46.84 2.62
3844 5166 6.821665 ACATATAACACTGGTTATGCTTTCGT 59.178 34.615 9.67 0.00 46.84 3.85
3845 5167 3.896648 AACACTGGTTATGCTTTCGTG 57.103 42.857 0.00 0.00 34.87 4.35
3846 5168 3.120321 ACACTGGTTATGCTTTCGTGA 57.880 42.857 0.00 0.00 0.00 4.35
3903 5252 2.031919 CCGCGCATAATGGCCCTA 59.968 61.111 8.75 0.00 0.00 3.53
3905 5254 1.596752 CGCGCATAATGGCCCTACA 60.597 57.895 8.75 0.00 0.00 2.74
3915 5264 0.824109 TGGCCCTACAATCTCTGTCG 59.176 55.000 0.00 0.00 39.64 4.35
3925 5274 1.602327 ATCTCTGTCGCTCAGCTGCA 61.602 55.000 9.47 0.00 43.32 4.41
3928 5277 3.586461 CTGTCGCTCAGCTGCACCT 62.586 63.158 9.47 0.00 37.36 4.00
3959 5308 3.798646 CATGGCTCATGTTGCGTTT 57.201 47.368 6.93 0.00 37.12 3.60
3960 5309 1.342555 CATGGCTCATGTTGCGTTTG 58.657 50.000 6.93 0.00 37.12 2.93
3961 5310 0.244450 ATGGCTCATGTTGCGTTTGG 59.756 50.000 0.00 0.00 0.00 3.28
3962 5311 1.080569 GGCTCATGTTGCGTTTGGG 60.081 57.895 0.00 0.00 0.00 4.12
3963 5312 1.080569 GCTCATGTTGCGTTTGGGG 60.081 57.895 0.00 0.00 0.00 4.96
3964 5313 1.805428 GCTCATGTTGCGTTTGGGGT 61.805 55.000 0.00 0.00 0.00 4.95
3965 5314 0.240945 CTCATGTTGCGTTTGGGGTC 59.759 55.000 0.00 0.00 0.00 4.46
3966 5315 0.466372 TCATGTTGCGTTTGGGGTCA 60.466 50.000 0.00 0.00 0.00 4.02
3967 5316 0.602562 CATGTTGCGTTTGGGGTCAT 59.397 50.000 0.00 0.00 0.00 3.06
3968 5317 0.602562 ATGTTGCGTTTGGGGTCATG 59.397 50.000 0.00 0.00 0.00 3.07
3969 5318 0.753479 TGTTGCGTTTGGGGTCATGT 60.753 50.000 0.00 0.00 0.00 3.21
3970 5319 0.387565 GTTGCGTTTGGGGTCATGTT 59.612 50.000 0.00 0.00 0.00 2.71
3971 5320 0.387202 TTGCGTTTGGGGTCATGTTG 59.613 50.000 0.00 0.00 0.00 3.33
3972 5321 0.753479 TGCGTTTGGGGTCATGTTGT 60.753 50.000 0.00 0.00 0.00 3.32
3973 5322 0.318614 GCGTTTGGGGTCATGTTGTG 60.319 55.000 0.00 0.00 0.00 3.33
3974 5323 1.028905 CGTTTGGGGTCATGTTGTGT 58.971 50.000 0.00 0.00 0.00 3.72
3975 5324 1.407258 CGTTTGGGGTCATGTTGTGTT 59.593 47.619 0.00 0.00 0.00 3.32
3988 5337 3.641986 GTGTTCGGGCGTTCGCAA 61.642 61.111 18.46 2.19 0.00 4.85
3992 5341 2.673114 TTCGGGCGTTCGCAACATC 61.673 57.895 18.46 1.06 0.00 3.06
4008 5357 3.281727 ACATCAGTTGTGTTGTGGTCT 57.718 42.857 0.00 0.00 37.11 3.85
4009 5358 4.415881 ACATCAGTTGTGTTGTGGTCTA 57.584 40.909 0.00 0.00 37.11 2.59
4037 5386 3.844099 CGAAGCGTTTATACCTTTGCAAC 59.156 43.478 0.00 0.00 0.00 4.17
4038 5387 4.611807 CGAAGCGTTTATACCTTTGCAACA 60.612 41.667 0.00 0.00 0.00 3.33
4067 5416 1.668101 TTGTGTCGGCAACAAACCCC 61.668 55.000 0.00 0.00 40.31 4.95
4080 5429 3.308438 CAAACCCCATTTGCTCAGAAG 57.692 47.619 0.00 0.00 41.30 2.85
4089 5438 3.072476 GCTCAGAAGCCCTGGTCA 58.928 61.111 4.17 0.00 43.10 4.02
4090 5439 1.376553 GCTCAGAAGCCCTGGTCAC 60.377 63.158 4.17 0.00 43.10 3.67
4091 5440 1.835927 GCTCAGAAGCCCTGGTCACT 61.836 60.000 4.17 0.00 43.10 3.41
4092 5441 0.036577 CTCAGAAGCCCTGGTCACTG 60.037 60.000 4.17 0.00 43.12 3.66
4093 5442 1.673665 CAGAAGCCCTGGTCACTGC 60.674 63.158 0.00 0.00 39.23 4.40
4094 5443 2.149383 AGAAGCCCTGGTCACTGCA 61.149 57.895 0.00 0.00 0.00 4.41
4095 5444 1.228245 GAAGCCCTGGTCACTGCAA 60.228 57.895 0.00 0.00 0.00 4.08
4096 5445 0.823356 GAAGCCCTGGTCACTGCAAA 60.823 55.000 0.00 0.00 0.00 3.68
4097 5446 0.178953 AAGCCCTGGTCACTGCAAAT 60.179 50.000 0.00 0.00 0.00 2.32
4103 5452 3.005554 CCTGGTCACTGCAAATAGAGTG 58.994 50.000 0.00 0.00 40.89 3.51
4112 5461 1.202348 GCAAATAGAGTGGGTGTTGCC 59.798 52.381 0.00 0.00 36.27 4.52
4139 5488 1.373246 CGTTGCAACAAGGGCCATG 60.373 57.895 28.01 6.80 0.00 3.66
4147 5496 0.393820 ACAAGGGCCATGTTGCAAAG 59.606 50.000 8.93 0.00 0.00 2.77
4150 5499 1.123246 AGGGCCATGTTGCAAAGCTT 61.123 50.000 6.18 0.00 0.00 3.74
4151 5500 0.250424 GGGCCATGTTGCAAAGCTTT 60.250 50.000 5.69 5.69 0.00 3.51
4152 5501 1.596603 GGCCATGTTGCAAAGCTTTT 58.403 45.000 9.53 0.00 0.00 2.27
4160 5509 6.308766 CCATGTTGCAAAGCTTTTACTACATC 59.691 38.462 23.91 12.70 0.00 3.06
4164 5513 6.403333 TGCAAAGCTTTTACTACATCGTAG 57.597 37.500 9.53 0.00 0.00 3.51
4166 5515 5.220605 GCAAAGCTTTTACTACATCGTAGGG 60.221 44.000 9.53 0.00 0.00 3.53
4191 5540 0.676466 TGCGGGCTGTTCGATCAAAT 60.676 50.000 0.00 0.00 0.00 2.32
4195 5544 3.243068 GCGGGCTGTTCGATCAAATTTAT 60.243 43.478 0.00 0.00 0.00 1.40
4196 5545 4.527564 CGGGCTGTTCGATCAAATTTATC 58.472 43.478 0.00 0.00 0.00 1.75
4198 5547 5.514279 GGGCTGTTCGATCAAATTTATCTG 58.486 41.667 0.00 0.00 0.00 2.90
4199 5548 5.296780 GGGCTGTTCGATCAAATTTATCTGA 59.703 40.000 0.00 0.00 0.00 3.27
4200 5549 6.195165 GGCTGTTCGATCAAATTTATCTGAC 58.805 40.000 0.00 0.00 0.00 3.51
4201 5550 5.898606 GCTGTTCGATCAAATTTATCTGACG 59.101 40.000 0.00 0.00 0.00 4.35
4202 5551 6.344572 TGTTCGATCAAATTTATCTGACGG 57.655 37.500 0.00 0.00 0.00 4.79
4203 5552 5.198274 GTTCGATCAAATTTATCTGACGGC 58.802 41.667 0.00 0.00 0.00 5.68
4222 5585 1.258197 GCCAACGCGCTAAGAGTTATC 59.742 52.381 5.73 0.00 40.91 1.75
4224 5587 2.535984 CCAACGCGCTAAGAGTTATCAG 59.464 50.000 5.73 0.00 40.91 2.90
4226 5589 1.405821 ACGCGCTAAGAGTTATCAGCT 59.594 47.619 5.73 0.00 31.74 4.24
4235 5598 6.183360 GCTAAGAGTTATCAGCTGACTGTTTG 60.183 42.308 20.97 17.46 44.77 2.93
4243 5606 2.286294 CAGCTGACTGTTTGTGAGTGTC 59.714 50.000 8.42 0.00 39.22 3.67
4251 5614 4.636206 ACTGTTTGTGAGTGTCTTCCTTTC 59.364 41.667 0.00 0.00 0.00 2.62
4252 5615 4.843728 TGTTTGTGAGTGTCTTCCTTTCT 58.156 39.130 0.00 0.00 0.00 2.52
4255 5618 4.753516 TGTGAGTGTCTTCCTTTCTGAA 57.246 40.909 0.00 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.347958 TGAAAACATGACCAAAGTCGC 57.652 42.857 0.00 0.00 46.74 5.19
1 2 5.175491 CCATTTGAAAACATGACCAAAGTCG 59.825 40.000 0.00 0.00 46.74 4.18
2 3 5.050159 GCCATTTGAAAACATGACCAAAGTC 60.050 40.000 0.00 0.00 43.83 3.01
3 4 4.815846 GCCATTTGAAAACATGACCAAAGT 59.184 37.500 0.00 0.00 32.87 2.66
4 5 4.815308 TGCCATTTGAAAACATGACCAAAG 59.185 37.500 0.00 0.00 32.87 2.77
5 6 4.574013 GTGCCATTTGAAAACATGACCAAA 59.426 37.500 0.00 4.52 33.72 3.28
6 7 4.125703 GTGCCATTTGAAAACATGACCAA 58.874 39.130 0.00 0.00 0.00 3.67
7 8 3.133542 TGTGCCATTTGAAAACATGACCA 59.866 39.130 0.00 0.00 0.00 4.02
8 9 3.726607 TGTGCCATTTGAAAACATGACC 58.273 40.909 0.00 0.00 0.00 4.02
9 10 3.742369 CCTGTGCCATTTGAAAACATGAC 59.258 43.478 0.00 0.00 0.00 3.06
10 11 3.244146 CCCTGTGCCATTTGAAAACATGA 60.244 43.478 0.00 0.00 0.00 3.07
11 12 3.068560 CCCTGTGCCATTTGAAAACATG 58.931 45.455 0.00 0.00 0.00 3.21
12 13 2.038820 CCCCTGTGCCATTTGAAAACAT 59.961 45.455 0.00 0.00 0.00 2.71
13 14 1.415659 CCCCTGTGCCATTTGAAAACA 59.584 47.619 0.00 0.00 0.00 2.83
14 15 1.691434 TCCCCTGTGCCATTTGAAAAC 59.309 47.619 0.00 0.00 0.00 2.43
15 16 1.691434 GTCCCCTGTGCCATTTGAAAA 59.309 47.619 0.00 0.00 0.00 2.29
16 17 1.337118 GTCCCCTGTGCCATTTGAAA 58.663 50.000 0.00 0.00 0.00 2.69
17 18 0.187117 TGTCCCCTGTGCCATTTGAA 59.813 50.000 0.00 0.00 0.00 2.69
18 19 0.539438 GTGTCCCCTGTGCCATTTGA 60.539 55.000 0.00 0.00 0.00 2.69
19 20 1.535204 GGTGTCCCCTGTGCCATTTG 61.535 60.000 0.00 0.00 0.00 2.32
20 21 1.228862 GGTGTCCCCTGTGCCATTT 60.229 57.895 0.00 0.00 0.00 2.32
21 22 2.440599 GGTGTCCCCTGTGCCATT 59.559 61.111 0.00 0.00 0.00 3.16
22 23 4.033776 CGGTGTCCCCTGTGCCAT 62.034 66.667 0.00 0.00 0.00 4.40
26 27 4.394712 GAGGCGGTGTCCCCTGTG 62.395 72.222 1.65 0.00 0.00 3.66
32 33 3.083997 ATCCAGGAGGCGGTGTCC 61.084 66.667 0.00 0.00 33.74 4.02
33 34 1.327690 TACATCCAGGAGGCGGTGTC 61.328 60.000 0.00 0.00 33.74 3.67
34 35 1.305802 TACATCCAGGAGGCGGTGT 60.306 57.895 0.00 0.00 33.74 4.16
35 36 1.144057 GTACATCCAGGAGGCGGTG 59.856 63.158 0.00 0.00 33.74 4.94
36 37 0.617820 AAGTACATCCAGGAGGCGGT 60.618 55.000 0.00 0.00 33.74 5.68
37 38 0.179073 CAAGTACATCCAGGAGGCGG 60.179 60.000 0.00 0.00 33.74 6.13
38 39 0.179073 CCAAGTACATCCAGGAGGCG 60.179 60.000 0.00 0.00 33.74 5.52
39 40 1.204146 TCCAAGTACATCCAGGAGGC 58.796 55.000 0.00 0.00 33.74 4.70
40 41 2.486191 GCATCCAAGTACATCCAGGAGG 60.486 54.545 0.00 0.00 33.59 4.30
41 42 2.171237 TGCATCCAAGTACATCCAGGAG 59.829 50.000 0.00 0.00 0.00 3.69
42 43 2.092968 GTGCATCCAAGTACATCCAGGA 60.093 50.000 0.00 0.00 0.00 3.86
43 44 2.092753 AGTGCATCCAAGTACATCCAGG 60.093 50.000 0.00 0.00 0.00 4.45
44 45 3.272574 AGTGCATCCAAGTACATCCAG 57.727 47.619 0.00 0.00 0.00 3.86
45 46 3.430236 CGTAGTGCATCCAAGTACATCCA 60.430 47.826 0.00 0.00 0.00 3.41
46 47 3.123804 CGTAGTGCATCCAAGTACATCC 58.876 50.000 0.00 0.00 0.00 3.51
47 48 3.782046 ACGTAGTGCATCCAAGTACATC 58.218 45.455 0.00 0.00 42.51 3.06
48 49 3.887621 ACGTAGTGCATCCAAGTACAT 57.112 42.857 0.00 0.00 42.51 2.29
62 63 1.887198 CTTCTGGTCCAGTCACGTAGT 59.113 52.381 18.65 0.00 34.75 2.73
63 64 1.887198 ACTTCTGGTCCAGTCACGTAG 59.113 52.381 18.65 9.68 32.61 3.51
64 65 1.611977 CACTTCTGGTCCAGTCACGTA 59.388 52.381 18.65 0.00 32.61 3.57
65 66 0.389391 CACTTCTGGTCCAGTCACGT 59.611 55.000 18.65 8.66 32.61 4.49
66 67 0.319900 CCACTTCTGGTCCAGTCACG 60.320 60.000 18.65 8.08 32.03 4.35
67 68 1.001406 CTCCACTTCTGGTCCAGTCAC 59.999 57.143 18.65 0.00 38.90 3.67
68 69 1.342074 CTCCACTTCTGGTCCAGTCA 58.658 55.000 18.65 6.10 38.90 3.41
69 70 1.001406 CACTCCACTTCTGGTCCAGTC 59.999 57.143 18.65 0.00 38.90 3.51
70 71 1.051812 CACTCCACTTCTGGTCCAGT 58.948 55.000 18.65 0.00 38.90 4.00
71 72 0.321122 GCACTCCACTTCTGGTCCAG 60.321 60.000 13.21 13.21 38.90 3.86
72 73 1.754745 GCACTCCACTTCTGGTCCA 59.245 57.895 0.00 0.00 38.90 4.02
73 74 1.003233 GGCACTCCACTTCTGGTCC 60.003 63.158 0.00 0.00 38.90 4.46
74 75 1.754745 TGGCACTCCACTTCTGGTC 59.245 57.895 0.00 0.00 38.90 4.02
75 76 3.986054 TGGCACTCCACTTCTGGT 58.014 55.556 0.00 0.00 38.90 4.00
83 84 0.250424 CAGTCACATGTGGCACTCCA 60.250 55.000 30.70 5.09 37.73 3.86
84 85 0.957395 CCAGTCACATGTGGCACTCC 60.957 60.000 30.70 10.09 37.73 3.85
85 86 2.548178 CCAGTCACATGTGGCACTC 58.452 57.895 30.70 13.67 37.73 3.51
86 87 4.806936 CCAGTCACATGTGGCACT 57.193 55.556 30.70 21.49 37.73 4.40
104 105 2.639926 GACCGCGATCGCATCTTCG 61.640 63.158 36.45 20.34 42.06 3.79
113 114 1.413382 GATCATGTCTGACCGCGATC 58.587 55.000 8.23 0.00 33.22 3.69
116 117 1.064134 TCGATCATGTCTGACCGCG 59.936 57.895 5.17 0.00 38.37 6.46
122 123 2.094894 GTGCCAAAGTCGATCATGTCTG 59.905 50.000 0.00 0.00 0.00 3.51
126 127 0.734889 GGGTGCCAAAGTCGATCATG 59.265 55.000 0.00 0.00 0.00 3.07
127 128 0.394352 GGGGTGCCAAAGTCGATCAT 60.394 55.000 0.00 0.00 0.00 2.45
128 129 1.002624 GGGGTGCCAAAGTCGATCA 60.003 57.895 0.00 0.00 0.00 2.92
153 154 3.891366 ACTTCTTGGATTTGGTGGTCAAG 59.109 43.478 0.00 0.00 36.62 3.02
159 160 5.772825 TCTCAAACTTCTTGGATTTGGTG 57.227 39.130 0.00 0.00 34.70 4.17
175 177 1.131504 ACGCGCAACAAGTTTCTCAAA 59.868 42.857 5.73 0.00 0.00 2.69
177 179 0.027455 CACGCGCAACAAGTTTCTCA 59.973 50.000 5.73 0.00 0.00 3.27
181 183 0.248054 CTGACACGCGCAACAAGTTT 60.248 50.000 5.73 0.00 0.00 2.66
192 194 1.865865 TTTGTTCCTCTCTGACACGC 58.134 50.000 0.00 0.00 0.00 5.34
198 209 5.297776 AGACAACACATTTTGTTCCTCTCTG 59.702 40.000 0.00 0.00 46.05 3.35
211 222 2.033299 CGCTTCACCAAGACAACACATT 59.967 45.455 0.00 0.00 0.00 2.71
219 230 1.006571 TCGACCGCTTCACCAAGAC 60.007 57.895 0.00 0.00 0.00 3.01
225 236 3.103911 CGTGGTCGACCGCTTCAC 61.104 66.667 37.46 24.81 44.11 3.18
234 245 1.021968 ATGATCATCGTCGTGGTCGA 58.978 50.000 1.18 0.00 44.12 4.20
245 256 2.033407 CGACGGCTTCAACATGATCATC 60.033 50.000 4.86 0.00 0.00 2.92
256 267 2.342279 CCAAGTCCGACGGCTTCA 59.658 61.111 17.16 0.00 0.00 3.02
261 272 2.281208 TTTGCCCAAGTCCGACGG 60.281 61.111 7.84 7.84 0.00 4.79
262 273 2.613506 GGTTTGCCCAAGTCCGACG 61.614 63.158 0.00 0.00 0.00 5.12
264 275 0.821711 CAAGGTTTGCCCAAGTCCGA 60.822 55.000 0.00 0.00 34.66 4.55
298 309 2.284625 AGCCATGGACCGACCTCA 60.285 61.111 18.40 0.00 39.86 3.86
299 310 1.617947 AAGAGCCATGGACCGACCTC 61.618 60.000 18.40 11.33 39.86 3.85
315 326 2.032528 CTTGCCAGTGCCGGAAGA 59.967 61.111 5.05 0.00 36.33 2.87
331 342 0.918310 AGCAAGCCTCCTCCAATCCT 60.918 55.000 0.00 0.00 0.00 3.24
334 345 1.305623 CCAGCAAGCCTCCTCCAAT 59.694 57.895 0.00 0.00 0.00 3.16
337 348 1.075659 AAACCAGCAAGCCTCCTCC 59.924 57.895 0.00 0.00 0.00 4.30
367 378 4.370917 CTTTGTTTGCCAACATGCTAAGT 58.629 39.130 3.93 0.00 42.66 2.24
370 381 2.102084 TGCTTTGTTTGCCAACATGCTA 59.898 40.909 21.09 11.02 42.66 3.49
372 383 1.003652 GTGCTTTGTTTGCCAACATGC 60.004 47.619 16.76 16.76 42.66 4.06
383 394 1.658686 TTGTTCGCCGGTGCTTTGTT 61.659 50.000 11.05 0.00 34.43 2.83
387 398 0.387565 AATTTTGTTCGCCGGTGCTT 59.612 45.000 11.05 0.00 34.43 3.91
395 406 3.794028 TGTGTGCTTACAATTTTGTTCGC 59.206 39.130 0.63 5.65 42.35 4.70
396 407 5.270083 TCTGTGTGCTTACAATTTTGTTCG 58.730 37.500 0.63 0.00 42.35 3.95
397 408 5.173854 GCTCTGTGTGCTTACAATTTTGTTC 59.826 40.000 0.63 0.00 42.35 3.18
405 416 0.472044 TGGGCTCTGTGTGCTTACAA 59.528 50.000 0.00 0.00 0.00 2.41
412 423 1.956170 GTGTCGTGGGCTCTGTGTG 60.956 63.158 0.00 0.00 0.00 3.82
419 430 0.691078 AGGATATGGTGTCGTGGGCT 60.691 55.000 0.00 0.00 0.00 5.19
423 434 1.209128 GCGAAGGATATGGTGTCGTG 58.791 55.000 0.00 0.00 34.29 4.35
424 435 0.248907 CGCGAAGGATATGGTGTCGT 60.249 55.000 0.00 0.00 34.29 4.34
432 443 1.007271 CGTCTGGCGCGAAGGATAT 60.007 57.895 12.10 0.00 0.00 1.63
433 444 2.411701 CGTCTGGCGCGAAGGATA 59.588 61.111 12.10 0.00 0.00 2.59
434 445 3.760035 ACGTCTGGCGCGAAGGAT 61.760 61.111 12.10 0.00 46.11 3.24
457 468 3.222354 AACAGTCGTCCTCACCGCC 62.222 63.158 0.00 0.00 0.00 6.13
459 470 1.162698 TAGAACAGTCGTCCTCACCG 58.837 55.000 0.00 0.00 0.00 4.94
460 471 2.735762 GCATAGAACAGTCGTCCTCACC 60.736 54.545 0.00 0.00 0.00 4.02
462 473 1.132453 CGCATAGAACAGTCGTCCTCA 59.868 52.381 0.00 0.00 0.00 3.86
464 475 0.456221 CCGCATAGAACAGTCGTCCT 59.544 55.000 0.00 0.00 0.00 3.85
466 477 0.179134 AGCCGCATAGAACAGTCGTC 60.179 55.000 0.00 0.00 0.00 4.20
467 478 1.100510 TAGCCGCATAGAACAGTCGT 58.899 50.000 0.00 0.00 0.00 4.34
468 479 2.054363 CATAGCCGCATAGAACAGTCG 58.946 52.381 0.00 0.00 0.00 4.18
508 531 4.214327 CGAGAAGGAGGAGCCGGC 62.214 72.222 21.89 21.89 43.43 6.13
510 533 4.214327 GCCGAGAAGGAGGAGCCG 62.214 72.222 0.00 0.00 45.00 5.52
511 534 2.376228 GATGCCGAGAAGGAGGAGCC 62.376 65.000 0.00 0.00 45.00 4.70
512 535 1.068921 GATGCCGAGAAGGAGGAGC 59.931 63.158 0.00 0.00 45.00 4.70
515 538 0.471617 ATTGGATGCCGAGAAGGAGG 59.528 55.000 0.00 0.00 45.00 4.30
520 543 3.194861 CGTCTAAATTGGATGCCGAGAA 58.805 45.455 0.00 0.00 0.00 2.87
521 544 2.821546 CGTCTAAATTGGATGCCGAGA 58.178 47.619 0.00 0.00 0.00 4.04
523 546 1.295792 GCGTCTAAATTGGATGCCGA 58.704 50.000 11.81 0.00 39.13 5.54
526 549 1.003866 GTCGGCGTCTAAATTGGATGC 60.004 52.381 14.09 14.09 42.86 3.91
530 553 1.287425 GGAGTCGGCGTCTAAATTGG 58.713 55.000 6.64 0.00 0.00 3.16
532 555 1.405121 GGTGGAGTCGGCGTCTAAATT 60.405 52.381 6.64 0.00 0.00 1.82
537 560 2.600769 AAGGTGGAGTCGGCGTCT 60.601 61.111 6.31 6.31 0.00 4.18
541 564 4.452733 CGGGAAGGTGGAGTCGGC 62.453 72.222 0.00 0.00 0.00 5.54
543 566 4.452733 GCCGGGAAGGTGGAGTCG 62.453 72.222 2.18 0.00 43.70 4.18
545 568 2.610859 ATGCCGGGAAGGTGGAGT 60.611 61.111 0.00 0.00 43.70 3.85
546 569 1.987807 ATGATGCCGGGAAGGTGGAG 61.988 60.000 0.00 0.00 43.70 3.86
547 570 2.000701 ATGATGCCGGGAAGGTGGA 61.001 57.895 0.00 0.00 43.70 4.02
548 571 1.825191 CATGATGCCGGGAAGGTGG 60.825 63.158 0.00 0.00 43.70 4.61
549 572 0.816825 CTCATGATGCCGGGAAGGTG 60.817 60.000 0.00 0.00 43.70 4.00
552 575 0.883814 GAGCTCATGATGCCGGGAAG 60.884 60.000 9.40 0.00 0.00 3.46
553 576 1.146930 GAGCTCATGATGCCGGGAA 59.853 57.895 9.40 0.00 0.00 3.97
554 577 2.811514 GGAGCTCATGATGCCGGGA 61.812 63.158 17.19 0.00 0.00 5.14
556 579 0.536687 AATGGAGCTCATGATGCCGG 60.537 55.000 17.19 0.00 35.99 6.13
557 580 0.873054 GAATGGAGCTCATGATGCCG 59.127 55.000 17.19 0.00 35.99 5.69
559 582 0.237761 GCGAATGGAGCTCATGATGC 59.762 55.000 17.19 9.79 35.99 3.91
560 583 0.873054 GGCGAATGGAGCTCATGATG 59.127 55.000 17.19 3.04 35.99 3.07
571 734 4.963815 AAAAACAGCGGCGAATGG 57.036 50.000 12.98 0.00 0.00 3.16
861 2053 2.606449 CTTTGGTGGTGGTGGGGT 59.394 61.111 0.00 0.00 0.00 4.95
862 2054 2.203625 CCTTTGGTGGTGGTGGGG 60.204 66.667 0.00 0.00 0.00 4.96
863 2055 2.203625 CCCTTTGGTGGTGGTGGG 60.204 66.667 0.00 0.00 0.00 4.61
936 2136 2.064581 CGAGAGGGGATTTCGGGGT 61.065 63.158 0.00 0.00 0.00 4.95
987 2187 1.200020 GACGCCATTCCAGAAAAGTGG 59.800 52.381 0.00 0.00 39.19 4.00
1192 2393 2.239654 ACCAGATTCGAACCATGGATGT 59.760 45.455 21.47 2.39 34.99 3.06
1250 2454 1.439353 AACACACGCACTTGAGCAGG 61.439 55.000 0.00 0.00 0.00 4.85
1261 2465 0.669625 GTCCAGACCCTAACACACGC 60.670 60.000 0.00 0.00 0.00 5.34
1263 2467 3.056749 CAGTAGTCCAGACCCTAACACAC 60.057 52.174 0.00 0.00 0.00 3.82
1275 2479 1.134995 TCATTCGCAGCAGTAGTCCAG 60.135 52.381 0.00 0.00 0.00 3.86
1330 2534 4.096081 GGGAATTGAATGAACTGAGCTGAG 59.904 45.833 0.00 0.00 0.00 3.35
1366 2571 1.515519 GCATGAACGCGACGACCTA 60.516 57.895 15.93 0.00 0.00 3.08
1377 2582 5.643777 ACTTACACTACCATGAAGCATGAAC 59.356 40.000 8.87 0.00 43.81 3.18
1403 2608 9.745018 TCATCAATTCTTCCTAAATTCTTCAGT 57.255 29.630 0.00 0.00 0.00 3.41
1407 2612 8.684520 CAGCTCATCAATTCTTCCTAAATTCTT 58.315 33.333 0.00 0.00 0.00 2.52
1408 2613 7.284944 CCAGCTCATCAATTCTTCCTAAATTCT 59.715 37.037 0.00 0.00 0.00 2.40
1409 2614 7.424001 CCAGCTCATCAATTCTTCCTAAATTC 58.576 38.462 0.00 0.00 0.00 2.17
1410 2615 6.183360 GCCAGCTCATCAATTCTTCCTAAATT 60.183 38.462 0.00 0.00 0.00 1.82
1479 2685 0.813184 CTGTTGCCTAATGTGCCAGG 59.187 55.000 0.00 0.00 34.85 4.45
1498 2704 2.069273 CCTCGCCATCGGAACATTATC 58.931 52.381 0.00 0.00 36.13 1.75
1518 2724 1.272769 AGACCACTTCCTCGTAGTTGC 59.727 52.381 0.00 0.00 0.00 4.17
1519 2725 3.662247 AAGACCACTTCCTCGTAGTTG 57.338 47.619 0.00 0.00 0.00 3.16
1525 2731 2.415625 CCTACGAAAGACCACTTCCTCG 60.416 54.545 0.00 0.00 40.20 4.63
1527 2736 2.606378 ACCTACGAAAGACCACTTCCT 58.394 47.619 0.00 0.00 35.05 3.36
1542 2751 2.035066 ACCATATCGTACCGCAACCTAC 59.965 50.000 0.00 0.00 0.00 3.18
1573 2782 0.251354 CAGTATGGCTCAGGTGCAGT 59.749 55.000 0.00 0.00 34.04 4.40
1624 2835 6.040278 TGGTATCTTCATTCAAACAAGCAACA 59.960 34.615 0.00 0.00 0.00 3.33
1637 2848 6.725364 ACTCCAGTTTCATGGTATCTTCATT 58.275 36.000 0.00 0.00 41.43 2.57
1683 2894 6.894654 ACGATTCCTACTCCATCATAGATCAT 59.105 38.462 0.00 0.00 0.00 2.45
1805 3016 1.413077 GTGCCCTATCTACCACCACTC 59.587 57.143 0.00 0.00 0.00 3.51
1822 3041 2.746362 GCTTGCATCCCTATGATAGTGC 59.254 50.000 6.60 6.60 34.84 4.40
1849 3068 2.159517 CGAGTTTTGCAGGATAAGTGGC 60.160 50.000 0.00 0.00 0.00 5.01
1928 3148 0.533308 GTAAGTGGGCCGTGTTCACA 60.533 55.000 11.08 0.00 34.17 3.58
1930 3150 0.398696 ATGTAAGTGGGCCGTGTTCA 59.601 50.000 0.00 0.00 0.00 3.18
1938 3158 5.304614 TGATAGTCTAAGGATGTAAGTGGGC 59.695 44.000 0.00 0.00 0.00 5.36
2043 3266 6.015519 AGCTGCCAACAAACTATTTTATGTCA 60.016 34.615 0.00 0.00 0.00 3.58
2071 3294 5.200483 AGTGAATTTCCCAGAACAAAGTGA 58.800 37.500 0.00 0.00 0.00 3.41
2099 3322 9.764363 TTCTATAAATATACACCTTGCAGACTG 57.236 33.333 0.00 0.00 0.00 3.51
2248 3520 4.367386 AGCTAAGCAATCACAGAAATGC 57.633 40.909 0.00 0.00 39.06 3.56
2293 3567 5.797549 ACCATCTCCCTTGGCTACGTAGT 62.798 52.174 22.98 0.00 40.73 2.73
2299 3573 2.561209 TGTACCATCTCCCTTGGCTA 57.439 50.000 0.00 0.00 37.81 3.93
2378 3652 6.371548 TGCATAGAGTAAATTATCGCAATCCC 59.628 38.462 0.00 0.00 0.00 3.85
2449 3723 6.987992 AGTTTCTAACACAAGTTGTTCCGATA 59.012 34.615 5.57 0.00 46.05 2.92
2452 3726 5.293569 AGAGTTTCTAACACAAGTTGTTCCG 59.706 40.000 5.57 0.00 46.05 4.30
2465 3739 4.513318 AGTTCTGCTTGCAGAGTTTCTAAC 59.487 41.667 22.06 16.22 32.21 2.34
2499 3773 0.394352 CCAGGAAACCGGCAGCTTAT 60.394 55.000 0.00 0.00 0.00 1.73
2511 3785 3.570550 CCAAAATACACCGAACCAGGAAA 59.429 43.478 0.00 0.00 34.73 3.13
2513 3787 2.372504 TCCAAAATACACCGAACCAGGA 59.627 45.455 0.00 0.00 34.73 3.86
2610 3885 9.952030 TCACTTCCAACAACATTAATAGATACA 57.048 29.630 0.00 0.00 0.00 2.29
2851 4126 4.024556 CAGACTCAGAAACGCAACAAATCT 60.025 41.667 0.00 0.00 0.00 2.40
2862 4137 3.118905 AGGAAGCACAGACTCAGAAAC 57.881 47.619 0.00 0.00 0.00 2.78
2872 4147 8.933807 CATATATAGATCAACAAGGAAGCACAG 58.066 37.037 0.00 0.00 0.00 3.66
2899 4174 4.848357 CCCTCATGGACAGTCTACAAAAT 58.152 43.478 0.00 0.00 35.39 1.82
2925 4200 8.632679 TCACAGAAAAGCTTCAACTGATAAATT 58.367 29.630 24.11 3.54 33.64 1.82
3015 4290 1.303309 CCAATCCAGTCTCGGCATTC 58.697 55.000 0.00 0.00 0.00 2.67
3050 4340 2.467566 ATACAACGTTCAGGGGTCAC 57.532 50.000 0.00 0.00 0.00 3.67
3051 4341 3.133362 GGATATACAACGTTCAGGGGTCA 59.867 47.826 0.00 0.00 0.00 4.02
3052 4342 3.133362 TGGATATACAACGTTCAGGGGTC 59.867 47.826 0.00 0.00 0.00 4.46
3053 4343 3.109151 TGGATATACAACGTTCAGGGGT 58.891 45.455 0.00 0.00 0.00 4.95
3054 4344 3.134081 AGTGGATATACAACGTTCAGGGG 59.866 47.826 0.00 0.00 0.00 4.79
3055 4345 4.402056 AGTGGATATACAACGTTCAGGG 57.598 45.455 0.00 0.00 0.00 4.45
3056 4346 5.175859 ACAAGTGGATATACAACGTTCAGG 58.824 41.667 0.00 0.00 0.00 3.86
3057 4347 6.590292 AGAACAAGTGGATATACAACGTTCAG 59.410 38.462 19.76 0.00 34.19 3.02
3058 4348 6.460781 AGAACAAGTGGATATACAACGTTCA 58.539 36.000 19.76 0.00 34.19 3.18
3059 4349 6.035758 GGAGAACAAGTGGATATACAACGTTC 59.964 42.308 13.73 13.73 0.00 3.95
3060 4350 5.873164 GGAGAACAAGTGGATATACAACGTT 59.127 40.000 0.00 0.00 0.00 3.99
3061 4351 5.187186 AGGAGAACAAGTGGATATACAACGT 59.813 40.000 0.00 0.00 0.00 3.99
3062 4352 5.661458 AGGAGAACAAGTGGATATACAACG 58.339 41.667 0.00 0.00 0.00 4.10
3063 4353 6.879458 ACAAGGAGAACAAGTGGATATACAAC 59.121 38.462 0.00 0.00 0.00 3.32
3064 4354 6.878923 CACAAGGAGAACAAGTGGATATACAA 59.121 38.462 0.00 0.00 0.00 2.41
3089 4379 4.911514 TGCTCCAGGTTAAGTTTGAAAC 57.088 40.909 0.00 0.00 0.00 2.78
3251 4541 2.999355 GCAAGTGCTCCTTCAGTAGAAG 59.001 50.000 0.00 0.00 43.22 2.85
3275 4565 1.666553 GGGAATGACACGTGCGACA 60.667 57.895 17.22 13.94 0.00 4.35
3280 4570 1.535462 GGTTCTTGGGAATGACACGTG 59.465 52.381 15.48 15.48 33.71 4.49
3311 4601 7.010460 TGCGATCTTATGCGATATCTAAAATGG 59.990 37.037 0.34 0.00 0.00 3.16
3406 4696 2.094854 GGCGTACCCAGGAGATATAACG 60.095 54.545 0.00 0.00 0.00 3.18
3424 4714 2.285602 GCGTATCATTACAACACAGGCG 60.286 50.000 0.00 0.00 0.00 5.52
3461 4751 8.189460 AGCAACGTAATGGTACTTTTAAAAACA 58.811 29.630 1.66 0.18 0.00 2.83
3541 4831 4.072839 CAGGTTTAACCAGGAGAAGGTTC 58.927 47.826 17.10 0.00 45.98 3.62
3553 4843 5.946377 AGAATCACAAGGATCAGGTTTAACC 59.054 40.000 5.91 5.91 34.86 2.85
3554 4844 6.127897 CCAGAATCACAAGGATCAGGTTTAAC 60.128 42.308 0.00 0.00 34.28 2.01
3563 4859 4.774124 TGATCACCAGAATCACAAGGATC 58.226 43.478 0.00 0.00 34.28 3.36
3614 4911 9.862371 CCTATATACTGTCTTAACATCCATCAC 57.138 37.037 0.00 0.00 34.13 3.06
3641 4938 4.408993 CACATATGCACATACCATTCGG 57.591 45.455 1.58 0.00 38.77 4.30
3742 5055 8.072567 CCAATTAAGTGAGAAACAGAAACAGAG 58.927 37.037 4.10 0.00 0.00 3.35
3750 5063 6.566197 AAGCTCCAATTAAGTGAGAAACAG 57.434 37.500 4.10 0.00 0.00 3.16
3778 5091 9.462174 CATGCACTGTTCTTATAAACTCAAAAA 57.538 29.630 0.00 0.00 0.00 1.94
3832 5154 5.530519 TCATCAACTCACGAAAGCATAAC 57.469 39.130 0.00 0.00 0.00 1.89
3842 5164 3.243877 GTCAATCCGATCATCAACTCACG 59.756 47.826 0.00 0.00 0.00 4.35
3844 5166 3.797039 GGTCAATCCGATCATCAACTCA 58.203 45.455 0.00 0.00 0.00 3.41
3892 5241 4.262635 CGACAGAGATTGTAGGGCCATTAT 60.263 45.833 6.18 0.00 41.05 1.28
3915 5264 2.513435 GGCTAGGTGCAGCTGAGC 60.513 66.667 28.10 26.75 45.15 4.26
3959 5308 0.536233 CCGAACACAACATGACCCCA 60.536 55.000 0.00 0.00 0.00 4.96
3960 5309 1.241315 CCCGAACACAACATGACCCC 61.241 60.000 0.00 0.00 0.00 4.95
3961 5310 1.862602 GCCCGAACACAACATGACCC 61.863 60.000 0.00 0.00 0.00 4.46
3962 5311 1.579429 GCCCGAACACAACATGACC 59.421 57.895 0.00 0.00 0.00 4.02
3963 5312 1.206578 CGCCCGAACACAACATGAC 59.793 57.895 0.00 0.00 0.00 3.06
3964 5313 0.816018 AACGCCCGAACACAACATGA 60.816 50.000 0.00 0.00 0.00 3.07
3965 5314 0.385473 GAACGCCCGAACACAACATG 60.385 55.000 0.00 0.00 0.00 3.21
3966 5315 1.837538 CGAACGCCCGAACACAACAT 61.838 55.000 0.00 0.00 0.00 2.71
3967 5316 2.526993 CGAACGCCCGAACACAACA 61.527 57.895 0.00 0.00 0.00 3.33
3968 5317 2.247267 CGAACGCCCGAACACAAC 59.753 61.111 0.00 0.00 0.00 3.32
3969 5318 3.641986 GCGAACGCCCGAACACAA 61.642 61.111 8.03 0.00 34.56 3.33
3970 5319 4.893601 TGCGAACGCCCGAACACA 62.894 61.111 16.27 0.00 41.09 3.72
3971 5320 3.641986 TTGCGAACGCCCGAACAC 61.642 61.111 16.27 0.00 41.09 3.32
3972 5321 3.641986 GTTGCGAACGCCCGAACA 61.642 61.111 16.27 0.00 41.09 3.18
3973 5322 2.827959 GATGTTGCGAACGCCCGAAC 62.828 60.000 16.27 13.72 41.09 3.95
3974 5323 2.666862 ATGTTGCGAACGCCCGAA 60.667 55.556 16.27 1.75 41.09 4.30
3975 5324 3.115892 GATGTTGCGAACGCCCGA 61.116 61.111 16.27 0.58 41.09 5.14
3988 5337 3.281727 AGACCACAACACAACTGATGT 57.718 42.857 0.00 0.00 45.34 3.06
3992 5341 4.380531 ACAGATAGACCACAACACAACTG 58.619 43.478 0.00 0.00 0.00 3.16
4006 5355 5.530171 AGGTATAAACGCTTCGACAGATAGA 59.470 40.000 0.00 0.00 0.00 1.98
4007 5356 5.759963 AGGTATAAACGCTTCGACAGATAG 58.240 41.667 0.00 0.00 0.00 2.08
4008 5357 5.762825 AGGTATAAACGCTTCGACAGATA 57.237 39.130 0.00 0.00 0.00 1.98
4009 5358 4.650754 AGGTATAAACGCTTCGACAGAT 57.349 40.909 0.00 0.00 0.00 2.90
4037 5386 1.016627 CCGACACAACATAGGCCATG 58.983 55.000 5.01 9.62 40.78 3.66
4038 5387 0.748005 GCCGACACAACATAGGCCAT 60.748 55.000 5.01 0.00 41.81 4.40
4079 5428 0.698238 TATTTGCAGTGACCAGGGCT 59.302 50.000 0.00 0.00 0.00 5.19
4080 5429 1.098050 CTATTTGCAGTGACCAGGGC 58.902 55.000 0.00 0.00 0.00 5.19
4081 5430 2.026822 ACTCTATTTGCAGTGACCAGGG 60.027 50.000 0.00 0.00 0.00 4.45
4082 5431 3.005554 CACTCTATTTGCAGTGACCAGG 58.994 50.000 0.00 0.00 42.37 4.45
4084 5433 2.290260 CCCACTCTATTTGCAGTGACCA 60.290 50.000 3.28 0.00 42.37 4.02
4085 5434 2.290323 ACCCACTCTATTTGCAGTGACC 60.290 50.000 3.28 0.00 42.37 4.02
4086 5435 2.744202 CACCCACTCTATTTGCAGTGAC 59.256 50.000 3.28 0.00 42.37 3.67
4087 5436 2.371841 ACACCCACTCTATTTGCAGTGA 59.628 45.455 3.28 0.00 42.37 3.41
4088 5437 2.783135 ACACCCACTCTATTTGCAGTG 58.217 47.619 0.00 0.00 39.90 3.66
4089 5438 3.149196 CAACACCCACTCTATTTGCAGT 58.851 45.455 0.00 0.00 0.00 4.40
4090 5439 2.095059 GCAACACCCACTCTATTTGCAG 60.095 50.000 0.00 0.00 39.30 4.41
4091 5440 1.885887 GCAACACCCACTCTATTTGCA 59.114 47.619 0.00 0.00 39.30 4.08
4092 5441 1.202348 GGCAACACCCACTCTATTTGC 59.798 52.381 0.00 0.00 38.87 3.68
4112 5461 1.733402 TTGTTGCAACGCCTTCCAGG 61.733 55.000 23.79 0.00 38.80 4.45
4115 5464 1.007387 CCTTGTTGCAACGCCTTCC 60.007 57.895 23.79 0.00 0.00 3.46
4120 5469 3.225069 ATGGCCCTTGTTGCAACGC 62.225 57.895 23.79 19.62 0.00 4.84
4139 5488 5.449304 ACGATGTAGTAAAAGCTTTGCAAC 58.551 37.500 13.54 11.48 0.00 4.17
4147 5496 4.397481 ACCCCTACGATGTAGTAAAAGC 57.603 45.455 3.53 0.00 0.00 3.51
4150 5499 3.770933 AGCAACCCCTACGATGTAGTAAA 59.229 43.478 3.53 0.00 0.00 2.01
4151 5500 3.131577 CAGCAACCCCTACGATGTAGTAA 59.868 47.826 3.53 0.00 0.00 2.24
4152 5501 2.691526 CAGCAACCCCTACGATGTAGTA 59.308 50.000 3.53 0.00 0.00 1.82
4179 5528 5.220586 GCCGTCAGATAAATTTGATCGAACA 60.221 40.000 0.00 0.00 0.00 3.18
4191 5540 1.355796 CGCGTTGGCCGTCAGATAAA 61.356 55.000 0.00 0.00 39.32 1.40
4198 5547 3.849953 CTTAGCGCGTTGGCCGTC 61.850 66.667 8.43 0.00 39.32 4.79
4199 5548 4.367023 TCTTAGCGCGTTGGCCGT 62.367 61.111 8.43 0.00 39.32 5.68
4200 5549 3.554692 CTCTTAGCGCGTTGGCCG 61.555 66.667 8.43 0.00 40.40 6.13
4201 5550 0.738412 TAACTCTTAGCGCGTTGGCC 60.738 55.000 8.43 0.00 35.02 5.36
4202 5551 1.258197 GATAACTCTTAGCGCGTTGGC 59.742 52.381 8.43 0.00 0.00 4.52
4203 5552 2.535984 CTGATAACTCTTAGCGCGTTGG 59.464 50.000 8.43 0.00 0.00 3.77
4212 5575 6.646653 CACAAACAGTCAGCTGATAACTCTTA 59.353 38.462 21.47 0.00 45.28 2.10
4224 5587 2.555199 AGACACTCACAAACAGTCAGC 58.445 47.619 0.00 0.00 0.00 4.26
4226 5589 3.197766 AGGAAGACACTCACAAACAGTCA 59.802 43.478 0.00 0.00 0.00 3.41
4235 5598 6.625873 AATTTCAGAAAGGAAGACACTCAC 57.374 37.500 1.28 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.