Multiple sequence alignment - TraesCS5D01G064800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G064800 chr5D 100.000 4627 0 0 386 5012 60219043 60214417 0.000000e+00 8545.0
1 TraesCS5D01G064800 chr5D 85.225 1110 124 21 2144 3240 60160379 60159297 0.000000e+00 1105.0
2 TraesCS5D01G064800 chr5D 91.400 500 42 1 1127 1625 60183093 60182594 0.000000e+00 684.0
3 TraesCS5D01G064800 chr5D 89.544 526 48 4 3423 3947 60147027 60146508 0.000000e+00 660.0
4 TraesCS5D01G064800 chr5D 93.657 268 17 0 4745 5012 411723208 411723475 7.820000e-108 401.0
5 TraesCS5D01G064800 chr5D 88.073 327 36 3 540 865 482554666 482554990 7.870000e-103 385.0
6 TraesCS5D01G064800 chr5D 83.662 355 52 6 542 894 138479436 138479786 3.740000e-86 329.0
7 TraesCS5D01G064800 chr5D 84.615 234 25 7 4513 4744 60146508 60146284 6.530000e-54 222.0
8 TraesCS5D01G064800 chr5D 82.857 210 10 11 931 1136 60183307 60183120 1.120000e-36 165.0
9 TraesCS5D01G064800 chr5D 100.000 75 0 0 1 75 60219428 60219354 6.770000e-29 139.0
10 TraesCS5D01G064800 chr5B 95.586 1835 53 14 386 2217 70438152 70439961 0.000000e+00 2915.0
11 TraesCS5D01G064800 chr5B 98.402 1502 22 1 2281 3780 70439956 70441457 0.000000e+00 2639.0
12 TraesCS5D01G064800 chr5B 98.653 965 10 2 3779 4741 70441540 70442503 0.000000e+00 1707.0
13 TraesCS5D01G064800 chr5B 86.705 1053 119 11 2246 3287 70360192 70361234 0.000000e+00 1149.0
14 TraesCS5D01G064800 chr5B 84.043 1222 129 35 2031 3240 70497698 70498865 0.000000e+00 1116.0
15 TraesCS5D01G064800 chr5B 89.940 497 49 1 1127 1622 70497021 70497517 1.520000e-179 640.0
16 TraesCS5D01G064800 chr5B 90.728 302 26 2 3423 3723 71994487 71994787 7.820000e-108 401.0
17 TraesCS5D01G064800 chr5B 90.397 302 27 2 3423 3723 70500802 70501102 3.640000e-106 396.0
18 TraesCS5D01G064800 chr5B 88.106 227 21 3 3721 3947 70501352 70501572 1.070000e-66 265.0
19 TraesCS5D01G064800 chr5B 88.106 227 21 3 3721 3947 71995031 71995251 1.070000e-66 265.0
20 TraesCS5D01G064800 chr5B 96.000 75 3 0 1 75 70437973 70438047 6.810000e-24 122.0
21 TraesCS5D01G064800 chr1D 81.845 1333 200 28 1933 3246 355073259 355074568 0.000000e+00 1083.0
22 TraesCS5D01G064800 chr1D 84.926 544 81 1 1127 1669 355072563 355073106 2.640000e-152 549.0
23 TraesCS5D01G064800 chr1D 94.052 269 16 0 4744 5012 207230439 207230707 4.670000e-110 409.0
24 TraesCS5D01G064800 chr5A 86.105 986 114 11 2663 3637 48772032 48771059 0.000000e+00 1040.0
25 TraesCS5D01G064800 chr5A 83.885 453 53 13 2179 2625 48828236 48827798 1.000000e-111 414.0
26 TraesCS5D01G064800 chr1A 82.217 1254 178 28 2014 3246 454517298 454518527 0.000000e+00 1038.0
27 TraesCS5D01G064800 chr1A 84.375 544 84 1 1127 1669 454516245 454516788 2.660000e-147 532.0
28 TraesCS5D01G064800 chr1B 81.775 1251 177 36 2014 3240 476872813 476874036 0.000000e+00 1000.0
29 TraesCS5D01G064800 chr1B 85.321 545 78 2 1127 1669 476871973 476872517 3.390000e-156 562.0
30 TraesCS5D01G064800 chr1B 89.113 248 27 0 3201 3448 681713950 681714197 4.870000e-80 309.0
31 TraesCS5D01G064800 chr1B 93.443 61 3 1 1 61 265697428 265697487 6.910000e-14 89.8
32 TraesCS5D01G064800 chr6D 83.504 1073 142 19 2190 3246 348650190 348651243 0.000000e+00 968.0
33 TraesCS5D01G064800 chr6D 84.743 544 82 1 1127 1669 348649237 348649780 1.230000e-150 544.0
34 TraesCS5D01G064800 chr6D 78.800 250 43 9 620 865 363870641 363870398 5.190000e-35 159.0
35 TraesCS5D01G064800 chr6D 94.667 75 3 1 1 75 256320801 256320874 1.140000e-21 115.0
36 TraesCS5D01G064800 chr6B 80.952 1239 185 33 2030 3246 531014274 531013065 0.000000e+00 933.0
37 TraesCS5D01G064800 chr6B 85.110 544 78 3 1127 1668 531015122 531014580 2.040000e-153 553.0
38 TraesCS5D01G064800 chr6B 93.680 269 17 0 4744 5012 66977889 66977621 2.170000e-108 403.0
39 TraesCS5D01G064800 chr6A 83.789 987 135 16 2272 3246 495258370 495257397 0.000000e+00 913.0
40 TraesCS5D01G064800 chr6A 84.559 544 83 1 1127 1669 495259415 495258872 5.710000e-149 538.0
41 TraesCS5D01G064800 chr3A 88.787 437 49 0 3201 3637 639175820 639176256 2.050000e-148 536.0
42 TraesCS5D01G064800 chr3A 94.796 269 13 1 4745 5012 117483939 117484207 7.760000e-113 418.0
43 TraesCS5D01G064800 chr2B 94.424 269 14 1 4745 5012 603410451 603410183 3.610000e-111 412.0
44 TraesCS5D01G064800 chr2B 93.680 269 17 0 4744 5012 221723499 221723767 2.170000e-108 403.0
45 TraesCS5D01G064800 chr2A 94.403 268 15 0 4745 5012 716504035 716504302 3.610000e-111 412.0
46 TraesCS5D01G064800 chr2A 94.366 71 4 0 5 75 104332972 104332902 5.300000e-20 110.0
47 TraesCS5D01G064800 chr4B 94.030 268 16 0 4745 5012 187444243 187444510 1.680000e-109 407.0
48 TraesCS5D01G064800 chr4B 84.049 326 42 6 542 865 509584519 509584202 6.300000e-79 305.0
49 TraesCS5D01G064800 chr7D 93.382 272 17 1 4742 5012 17861470 17861741 7.820000e-108 401.0
50 TraesCS5D01G064800 chr7B 85.231 325 44 4 542 865 667412416 667412095 1.040000e-86 331.0
51 TraesCS5D01G064800 chr7A 85.714 308 41 3 552 858 705602376 705602071 6.260000e-84 322.0
52 TraesCS5D01G064800 chr7A 85.522 297 40 2 2296 2592 111944073 111943780 1.750000e-79 307.0
53 TraesCS5D01G064800 chr7A 84.516 310 43 5 557 865 57177526 57177831 8.150000e-78 302.0
54 TraesCS5D01G064800 chr7A 85.802 162 19 4 707 865 16419468 16419628 8.630000e-38 169.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G064800 chr5D 60214417 60219428 5011 True 4342.00 8545 100.00000 1 5012 2 chr5D.!!$R4 5011
1 TraesCS5D01G064800 chr5D 60159297 60160379 1082 True 1105.00 1105 85.22500 2144 3240 1 chr5D.!!$R1 1096
2 TraesCS5D01G064800 chr5D 60146284 60147027 743 True 441.00 660 87.07950 3423 4744 2 chr5D.!!$R2 1321
3 TraesCS5D01G064800 chr5D 60182594 60183307 713 True 424.50 684 87.12850 931 1625 2 chr5D.!!$R3 694
4 TraesCS5D01G064800 chr5B 70437973 70442503 4530 False 1845.75 2915 97.16025 1 4741 4 chr5B.!!$F2 4740
5 TraesCS5D01G064800 chr5B 70360192 70361234 1042 False 1149.00 1149 86.70500 2246 3287 1 chr5B.!!$F1 1041
6 TraesCS5D01G064800 chr5B 70497021 70501572 4551 False 604.25 1116 88.12150 1127 3947 4 chr5B.!!$F3 2820
7 TraesCS5D01G064800 chr5B 71994487 71995251 764 False 333.00 401 89.41700 3423 3947 2 chr5B.!!$F4 524
8 TraesCS5D01G064800 chr1D 355072563 355074568 2005 False 816.00 1083 83.38550 1127 3246 2 chr1D.!!$F2 2119
9 TraesCS5D01G064800 chr5A 48771059 48772032 973 True 1040.00 1040 86.10500 2663 3637 1 chr5A.!!$R1 974
10 TraesCS5D01G064800 chr1A 454516245 454518527 2282 False 785.00 1038 83.29600 1127 3246 2 chr1A.!!$F1 2119
11 TraesCS5D01G064800 chr1B 476871973 476874036 2063 False 781.00 1000 83.54800 1127 3240 2 chr1B.!!$F3 2113
12 TraesCS5D01G064800 chr6D 348649237 348651243 2006 False 756.00 968 84.12350 1127 3246 2 chr6D.!!$F2 2119
13 TraesCS5D01G064800 chr6B 531013065 531015122 2057 True 743.00 933 83.03100 1127 3246 2 chr6B.!!$R2 2119
14 TraesCS5D01G064800 chr6A 495257397 495259415 2018 True 725.50 913 84.17400 1127 3246 2 chr6A.!!$R1 2119

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
33 34 0.674534 GACGGGCCTACATAGACCAG 59.325 60.0 0.84 0.00 0.00 4.00 F
994 995 0.974383 ACAAGAACCCTACGTCCCTG 59.026 55.0 0.00 0.00 0.00 4.45 F
1894 2034 0.520827 GAGTGCGAGACCGTAGTTCG 60.521 60.0 0.00 0.00 34.25 3.95 F
2440 2842 0.934901 CGACCGTGATATCGTGGCAG 60.935 60.0 11.82 4.17 33.63 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1337 1378 0.324943 AGGTAGTTCATGCAGCGGTT 59.675 50.000 0.00 0.0 0.00 4.44 R
2417 2819 0.028902 CACGATATCACGGTCGAGCA 59.971 55.000 15.89 0.0 40.11 4.26 R
3614 5836 0.449388 CTGCGCACAATCTCCCTTTC 59.551 55.000 5.66 0.0 0.00 2.62 R
4173 6734 2.026262 AGTTGCTTCACATTACCCGGAT 60.026 45.455 0.73 0.0 0.00 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 0.674534 GACGGGCCTACATAGACCAG 59.325 60.000 0.84 0.00 0.00 4.00
472 473 4.647615 CCCTATCGTGCCGCCTCG 62.648 72.222 0.00 0.00 0.00 4.63
505 506 2.663188 GATCCCACGCATCCGAGC 60.663 66.667 0.00 0.00 38.29 5.03
527 528 2.125106 GTCGCGAATCAAGGCCCT 60.125 61.111 12.06 0.00 0.00 5.19
587 588 4.408821 TCCCCGACACAGCCATGC 62.409 66.667 0.00 0.00 0.00 4.06
602 603 4.735132 TGCTGCGGCGTCCTACAC 62.735 66.667 13.96 0.00 42.25 2.90
603 604 4.735132 GCTGCGGCGTCCTACACA 62.735 66.667 9.37 0.00 0.00 3.72
698 699 4.887987 AGATGAGCAGCTCCGCGC 62.888 66.667 20.16 0.00 36.85 6.86
730 731 3.787001 CGGGAGGAGGAAGTGCCC 61.787 72.222 0.00 0.00 37.37 5.36
731 732 3.412408 GGGAGGAGGAAGTGCCCC 61.412 72.222 0.00 0.00 37.37 5.80
809 810 2.838225 AGGGCCGGTGGATCTACG 60.838 66.667 1.90 0.51 0.00 3.51
813 814 2.417516 CCGGTGGATCTACGCTGG 59.582 66.667 2.84 1.55 40.68 4.85
994 995 0.974383 ACAAGAACCCTACGTCCCTG 59.026 55.000 0.00 0.00 0.00 4.45
1136 1177 2.669133 CCCCCGCTGAAGTCCATCA 61.669 63.158 0.00 0.00 0.00 3.07
1152 1193 2.695666 CCATCAAGGAGACGTACCAGAT 59.304 50.000 12.69 11.66 41.22 2.90
1173 1214 2.996168 AAGACGCACCTGGAGCACAC 62.996 60.000 16.29 6.51 0.00 3.82
1563 1605 2.561733 TACTCGCCAACATCTTCTCG 57.438 50.000 0.00 0.00 0.00 4.04
1625 1668 4.473477 AGAAGTACAAGCAGGTGATACC 57.527 45.455 0.00 0.00 38.99 2.73
1846 1928 3.509575 TGTGCCATTTGAGTATTTGACCC 59.490 43.478 0.00 0.00 0.00 4.46
1894 2034 0.520827 GAGTGCGAGACCGTAGTTCG 60.521 60.000 0.00 0.00 34.25 3.95
2099 2484 6.100004 ACCGTGAAGACACATATCTAGTTTG 58.900 40.000 0.00 0.00 46.20 2.93
2115 2500 4.552166 AGTTTGAAAACTGACATGACCG 57.448 40.909 7.62 0.00 46.80 4.79
2220 2612 6.420638 AGTATTAACCAATGTCCCTTGTACC 58.579 40.000 0.00 0.00 0.00 3.34
2221 2613 2.597578 AACCAATGTCCCTTGTACCC 57.402 50.000 0.00 0.00 0.00 3.69
2224 2616 1.406887 CCAATGTCCCTTGTACCCTCG 60.407 57.143 0.00 0.00 0.00 4.63
2234 2626 1.563924 TGTACCCTCGTTAGGCACAT 58.436 50.000 0.00 0.00 42.14 3.21
2235 2627 2.737544 TGTACCCTCGTTAGGCACATA 58.262 47.619 0.00 0.00 42.14 2.29
2294 2696 3.160777 CATTCCTCCTTGAATGCTTGC 57.839 47.619 1.27 0.00 43.53 4.01
2331 2733 4.453480 AAACATGGGGAAGAAGTCAGAA 57.547 40.909 0.00 0.00 0.00 3.02
2405 2807 1.402787 CCTGACCTTGCCAAGTTTGT 58.597 50.000 3.37 0.00 0.00 2.83
2417 2819 3.319122 GCCAAGTTTGTCTTCACCAAGAT 59.681 43.478 0.00 0.00 40.88 2.40
2440 2842 0.934901 CGACCGTGATATCGTGGCAG 60.935 60.000 11.82 4.17 33.63 4.85
2515 2917 3.565482 TGTTGAGTTGAATGGTCAGAAGC 59.435 43.478 0.00 0.00 34.49 3.86
2832 3244 5.458041 ACCTCAGACAATTTGTTTGGATG 57.542 39.130 17.19 10.06 39.80 3.51
3227 3650 1.533625 CAATCTCCTTCGTTTGGCCA 58.466 50.000 0.00 0.00 0.00 5.36
3366 5588 3.499918 CAGCGTGGAGAAATCAAGAAACT 59.500 43.478 0.00 0.00 0.00 2.66
3393 5615 2.625737 CGATGATGTGTTCCTTGAGCT 58.374 47.619 0.00 0.00 0.00 4.09
3430 5652 2.223272 GCGGGAAGAAATTGATCGGTTC 60.223 50.000 0.00 0.00 0.00 3.62
3614 5836 1.533625 TCTTCGGTTGGCTTGGATTG 58.466 50.000 0.00 0.00 0.00 2.67
3750 6227 8.154856 AGTACTTTTGGCTAGTTTAATCAGTCA 58.845 33.333 0.00 0.00 0.00 3.41
3815 6376 1.202806 TCTTGGTGGCAGAACTTCCAG 60.203 52.381 0.00 0.00 32.15 3.86
4113 6674 4.825422 ACATATCTCCATTATGCACTCGG 58.175 43.478 0.00 0.00 31.54 4.63
4120 6681 4.522114 TCCATTATGCACTCGGATGAAAA 58.478 39.130 0.00 0.00 0.00 2.29
4418 6979 1.339631 TGTCAGGATACCCCGCAAAAG 60.340 52.381 0.00 0.00 40.87 2.27
4505 7066 0.743688 CTCTGACCAGTCATCGAGGG 59.256 60.000 0.04 0.00 39.13 4.30
4607 7170 1.073025 ATCTGTGTTGGAGCGGCAA 59.927 52.632 1.45 0.00 0.00 4.52
4741 7304 2.004583 TTTCAGCGACCAGAATACCG 57.995 50.000 0.00 0.00 0.00 4.02
4744 7307 0.456221 CAGCGACCAGAATACCGACT 59.544 55.000 0.00 0.00 0.00 4.18
4745 7308 0.456221 AGCGACCAGAATACCGACTG 59.544 55.000 0.00 0.00 0.00 3.51
4746 7309 0.172803 GCGACCAGAATACCGACTGT 59.827 55.000 0.00 0.00 32.93 3.55
4747 7310 1.403780 GCGACCAGAATACCGACTGTT 60.404 52.381 0.00 0.00 32.93 3.16
4748 7311 2.259618 CGACCAGAATACCGACTGTTG 58.740 52.381 0.00 0.00 32.93 3.33
4749 7312 2.094906 CGACCAGAATACCGACTGTTGA 60.095 50.000 0.00 0.00 32.93 3.18
4750 7313 3.613193 CGACCAGAATACCGACTGTTGAA 60.613 47.826 0.00 0.00 32.93 2.69
4751 7314 4.312443 GACCAGAATACCGACTGTTGAAA 58.688 43.478 0.00 0.00 32.93 2.69
4752 7315 4.906618 ACCAGAATACCGACTGTTGAAAT 58.093 39.130 0.00 0.00 32.93 2.17
4753 7316 6.045072 ACCAGAATACCGACTGTTGAAATA 57.955 37.500 0.00 0.00 32.93 1.40
4754 7317 6.650120 ACCAGAATACCGACTGTTGAAATAT 58.350 36.000 0.00 0.00 32.93 1.28
4755 7318 7.788026 ACCAGAATACCGACTGTTGAAATATA 58.212 34.615 0.00 0.00 32.93 0.86
4756 7319 8.429641 ACCAGAATACCGACTGTTGAAATATAT 58.570 33.333 0.00 0.00 32.93 0.86
4757 7320 9.273016 CCAGAATACCGACTGTTGAAATATATT 57.727 33.333 0.00 0.00 32.93 1.28
4759 7322 9.832445 AGAATACCGACTGTTGAAATATATTGT 57.168 29.630 0.00 0.00 0.00 2.71
4761 7324 6.920569 ACCGACTGTTGAAATATATTGTCC 57.079 37.500 0.00 0.00 0.00 4.02
4762 7325 5.522460 ACCGACTGTTGAAATATATTGTCCG 59.478 40.000 0.00 0.00 0.00 4.79
4763 7326 5.432157 CGACTGTTGAAATATATTGTCCGC 58.568 41.667 0.00 0.00 0.00 5.54
4764 7327 5.558273 CGACTGTTGAAATATATTGTCCGCC 60.558 44.000 0.00 0.00 0.00 6.13
4765 7328 5.437060 ACTGTTGAAATATATTGTCCGCCT 58.563 37.500 0.00 0.00 0.00 5.52
4766 7329 5.527582 ACTGTTGAAATATATTGTCCGCCTC 59.472 40.000 0.00 0.00 0.00 4.70
4767 7330 4.819630 TGTTGAAATATATTGTCCGCCTCC 59.180 41.667 0.00 0.00 0.00 4.30
4768 7331 4.015872 TGAAATATATTGTCCGCCTCCC 57.984 45.455 0.00 0.00 0.00 4.30
4769 7332 3.650942 TGAAATATATTGTCCGCCTCCCT 59.349 43.478 0.00 0.00 0.00 4.20
4770 7333 3.983044 AATATATTGTCCGCCTCCCTC 57.017 47.619 0.00 0.00 0.00 4.30
4771 7334 1.640917 TATATTGTCCGCCTCCCTCC 58.359 55.000 0.00 0.00 0.00 4.30
4772 7335 0.399949 ATATTGTCCGCCTCCCTCCA 60.400 55.000 0.00 0.00 0.00 3.86
4773 7336 0.399949 TATTGTCCGCCTCCCTCCAT 60.400 55.000 0.00 0.00 0.00 3.41
4774 7337 1.700042 ATTGTCCGCCTCCCTCCATC 61.700 60.000 0.00 0.00 0.00 3.51
4775 7338 2.764128 GTCCGCCTCCCTCCATCA 60.764 66.667 0.00 0.00 0.00 3.07
4776 7339 2.444706 TCCGCCTCCCTCCATCAG 60.445 66.667 0.00 0.00 0.00 2.90
4777 7340 2.765807 CCGCCTCCCTCCATCAGT 60.766 66.667 0.00 0.00 0.00 3.41
4778 7341 2.370445 CCGCCTCCCTCCATCAGTT 61.370 63.158 0.00 0.00 0.00 3.16
4779 7342 1.048724 CCGCCTCCCTCCATCAGTTA 61.049 60.000 0.00 0.00 0.00 2.24
4780 7343 0.390860 CGCCTCCCTCCATCAGTTAG 59.609 60.000 0.00 0.00 0.00 2.34
4781 7344 0.761802 GCCTCCCTCCATCAGTTAGG 59.238 60.000 0.00 0.00 0.00 2.69
4782 7345 1.692762 GCCTCCCTCCATCAGTTAGGA 60.693 57.143 0.00 0.00 31.64 2.94
4783 7346 2.043227 CCTCCCTCCATCAGTTAGGAC 58.957 57.143 0.00 0.00 31.64 3.85
4784 7347 2.359781 CCTCCCTCCATCAGTTAGGACT 60.360 54.545 0.00 0.00 36.25 3.85
4785 7348 3.379452 CTCCCTCCATCAGTTAGGACTT 58.621 50.000 0.00 0.00 32.54 3.01
4786 7349 3.777522 CTCCCTCCATCAGTTAGGACTTT 59.222 47.826 0.00 0.00 32.54 2.66
4787 7350 4.175962 TCCCTCCATCAGTTAGGACTTTT 58.824 43.478 0.00 0.00 32.54 2.27
4788 7351 4.019321 TCCCTCCATCAGTTAGGACTTTTG 60.019 45.833 0.00 0.00 32.54 2.44
4789 7352 4.265073 CCTCCATCAGTTAGGACTTTTGG 58.735 47.826 0.00 0.00 36.98 3.28
4790 7353 4.019321 CCTCCATCAGTTAGGACTTTTGGA 60.019 45.833 6.91 6.91 39.94 3.53
4791 7354 5.339530 CCTCCATCAGTTAGGACTTTTGGAT 60.340 44.000 7.36 0.00 40.72 3.41
4792 7355 5.500234 TCCATCAGTTAGGACTTTTGGATG 58.500 41.667 0.00 0.00 38.50 3.51
4793 7356 5.250543 TCCATCAGTTAGGACTTTTGGATGA 59.749 40.000 0.00 0.00 38.50 2.92
4794 7357 5.587844 CCATCAGTTAGGACTTTTGGATGAG 59.412 44.000 0.00 0.00 37.46 2.90
4795 7358 5.825593 TCAGTTAGGACTTTTGGATGAGT 57.174 39.130 0.00 0.00 32.54 3.41
4796 7359 6.187727 TCAGTTAGGACTTTTGGATGAGTT 57.812 37.500 0.00 0.00 32.54 3.01
4797 7360 7.311092 TCAGTTAGGACTTTTGGATGAGTTA 57.689 36.000 0.00 0.00 32.54 2.24
4798 7361 7.386851 TCAGTTAGGACTTTTGGATGAGTTAG 58.613 38.462 0.00 0.00 32.54 2.34
4799 7362 6.092807 CAGTTAGGACTTTTGGATGAGTTAGC 59.907 42.308 0.00 0.00 32.54 3.09
4800 7363 4.917906 AGGACTTTTGGATGAGTTAGCT 57.082 40.909 0.00 0.00 0.00 3.32
4801 7364 7.180408 AGTTAGGACTTTTGGATGAGTTAGCTA 59.820 37.037 0.00 0.00 29.87 3.32
4802 7365 5.983540 AGGACTTTTGGATGAGTTAGCTAG 58.016 41.667 0.00 0.00 0.00 3.42
4803 7366 5.721960 AGGACTTTTGGATGAGTTAGCTAGA 59.278 40.000 0.00 0.00 0.00 2.43
4804 7367 6.045955 GGACTTTTGGATGAGTTAGCTAGAG 58.954 44.000 0.00 0.00 0.00 2.43
4805 7368 5.423886 ACTTTTGGATGAGTTAGCTAGAGC 58.576 41.667 0.00 0.00 42.49 4.09
4806 7369 5.046304 ACTTTTGGATGAGTTAGCTAGAGCA 60.046 40.000 4.01 0.00 45.16 4.26
4807 7370 5.620738 TTTGGATGAGTTAGCTAGAGCAT 57.379 39.130 4.01 0.00 45.16 3.79
4808 7371 4.597404 TGGATGAGTTAGCTAGAGCATG 57.403 45.455 4.01 0.00 45.16 4.06
4809 7372 4.218312 TGGATGAGTTAGCTAGAGCATGA 58.782 43.478 4.01 0.00 45.16 3.07
4810 7373 4.651045 TGGATGAGTTAGCTAGAGCATGAA 59.349 41.667 4.01 0.00 45.16 2.57
4811 7374 5.306419 TGGATGAGTTAGCTAGAGCATGAAT 59.694 40.000 4.01 0.00 45.16 2.57
4812 7375 6.183361 TGGATGAGTTAGCTAGAGCATGAATT 60.183 38.462 4.01 0.00 45.16 2.17
4813 7376 6.368516 GGATGAGTTAGCTAGAGCATGAATTC 59.631 42.308 4.01 0.00 45.16 2.17
4814 7377 6.225981 TGAGTTAGCTAGAGCATGAATTCA 57.774 37.500 11.26 11.26 45.16 2.57
4815 7378 6.643388 TGAGTTAGCTAGAGCATGAATTCAA 58.357 36.000 13.09 0.00 45.16 2.69
4816 7379 7.278135 TGAGTTAGCTAGAGCATGAATTCAAT 58.722 34.615 13.09 1.32 45.16 2.57
4817 7380 8.424133 TGAGTTAGCTAGAGCATGAATTCAATA 58.576 33.333 13.09 0.58 45.16 1.90
4818 7381 9.434420 GAGTTAGCTAGAGCATGAATTCAATAT 57.566 33.333 13.09 0.54 45.16 1.28
4819 7382 9.217278 AGTTAGCTAGAGCATGAATTCAATATG 57.783 33.333 13.09 7.69 45.16 1.78
4820 7383 8.449397 GTTAGCTAGAGCATGAATTCAATATGG 58.551 37.037 13.09 2.63 45.16 2.74
4821 7384 6.540995 AGCTAGAGCATGAATTCAATATGGT 58.459 36.000 13.09 11.91 45.16 3.55
4822 7385 7.683578 AGCTAGAGCATGAATTCAATATGGTA 58.316 34.615 13.09 0.00 45.16 3.25
4823 7386 8.327271 AGCTAGAGCATGAATTCAATATGGTAT 58.673 33.333 13.09 11.57 45.16 2.73
4824 7387 8.610896 GCTAGAGCATGAATTCAATATGGTATC 58.389 37.037 13.09 1.81 41.59 2.24
4825 7388 9.662947 CTAGAGCATGAATTCAATATGGTATCA 57.337 33.333 13.09 0.81 33.19 2.15
4826 7389 8.563123 AGAGCATGAATTCAATATGGTATCAG 57.437 34.615 13.09 0.00 33.19 2.90
4827 7390 8.380867 AGAGCATGAATTCAATATGGTATCAGA 58.619 33.333 13.09 0.00 33.19 3.27
4828 7391 8.929260 AGCATGAATTCAATATGGTATCAGAA 57.071 30.769 13.09 0.00 31.45 3.02
4829 7392 8.790718 AGCATGAATTCAATATGGTATCAGAAC 58.209 33.333 13.09 0.00 31.45 3.01
4830 7393 8.025445 GCATGAATTCAATATGGTATCAGAACC 58.975 37.037 13.09 0.00 40.19 3.62
4858 7421 2.727123 TTGAGTTCAAGACCTTGCCA 57.273 45.000 4.94 0.00 40.24 4.92
4859 7422 2.727123 TGAGTTCAAGACCTTGCCAA 57.273 45.000 4.94 0.00 40.24 4.52
4860 7423 2.297701 TGAGTTCAAGACCTTGCCAAC 58.702 47.619 4.94 5.75 40.24 3.77
4861 7424 1.264288 GAGTTCAAGACCTTGCCAACG 59.736 52.381 4.94 0.00 40.24 4.10
4862 7425 0.317854 GTTCAAGACCTTGCCAACGC 60.318 55.000 4.94 0.00 40.24 4.84
4863 7426 0.749818 TTCAAGACCTTGCCAACGCA 60.750 50.000 4.94 0.00 45.49 5.24
4878 7441 6.651308 TGCCAACGCAGTATTAAATATAACG 58.349 36.000 0.00 0.00 45.00 3.18
4879 7442 6.479331 TGCCAACGCAGTATTAAATATAACGA 59.521 34.615 0.00 0.00 45.00 3.85
4880 7443 7.171848 TGCCAACGCAGTATTAAATATAACGAT 59.828 33.333 0.00 0.00 45.00 3.73
4881 7444 8.013378 GCCAACGCAGTATTAAATATAACGATT 58.987 33.333 0.00 0.00 45.00 3.34
4882 7445 9.525007 CCAACGCAGTATTAAATATAACGATTC 57.475 33.333 0.00 0.00 45.00 2.52
4885 7448 8.433126 ACGCAGTATTAAATATAACGATTCTGC 58.567 33.333 0.00 0.00 41.94 4.26
4886 7449 8.792831 GCAGTATTAAATATAACGATTCTGCG 57.207 34.615 0.00 0.00 35.10 5.18
4887 7450 7.898309 GCAGTATTAAATATAACGATTCTGCGG 59.102 37.037 0.00 0.00 35.10 5.69
4888 7451 7.898309 CAGTATTAAATATAACGATTCTGCGGC 59.102 37.037 0.00 0.00 35.12 6.53
4889 7452 5.600908 TTAAATATAACGATTCTGCGGCC 57.399 39.130 0.00 0.00 35.12 6.13
4890 7453 3.402628 AATATAACGATTCTGCGGCCT 57.597 42.857 0.00 0.00 35.12 5.19
4891 7454 4.530710 AATATAACGATTCTGCGGCCTA 57.469 40.909 0.00 0.00 35.12 3.93
4892 7455 2.150397 ATAACGATTCTGCGGCCTAC 57.850 50.000 0.00 0.00 35.12 3.18
4893 7456 0.818938 TAACGATTCTGCGGCCTACA 59.181 50.000 0.00 0.00 35.12 2.74
4894 7457 0.178068 AACGATTCTGCGGCCTACAT 59.822 50.000 0.00 0.00 35.12 2.29
4895 7458 0.249489 ACGATTCTGCGGCCTACATC 60.249 55.000 0.00 0.00 35.12 3.06
4896 7459 1.278172 CGATTCTGCGGCCTACATCG 61.278 60.000 0.00 3.24 0.00 3.84
4897 7460 0.032130 GATTCTGCGGCCTACATCGA 59.968 55.000 0.00 0.00 0.00 3.59
4898 7461 0.681733 ATTCTGCGGCCTACATCGAT 59.318 50.000 0.00 0.00 0.00 3.59
4899 7462 0.032130 TTCTGCGGCCTACATCGATC 59.968 55.000 0.00 0.00 0.00 3.69
4900 7463 1.373497 CTGCGGCCTACATCGATCC 60.373 63.158 0.00 0.00 0.00 3.36
4901 7464 2.048127 GCGGCCTACATCGATCCC 60.048 66.667 0.00 0.00 0.00 3.85
4902 7465 2.867855 GCGGCCTACATCGATCCCA 61.868 63.158 0.00 0.00 0.00 4.37
4903 7466 1.975327 CGGCCTACATCGATCCCAT 59.025 57.895 0.00 0.00 0.00 4.00
4904 7467 0.390340 CGGCCTACATCGATCCCATG 60.390 60.000 0.00 0.00 0.00 3.66
4905 7468 0.687354 GGCCTACATCGATCCCATGT 59.313 55.000 0.00 9.36 38.13 3.21
4906 7469 1.338200 GGCCTACATCGATCCCATGTC 60.338 57.143 7.98 0.00 35.95 3.06
4907 7470 1.620819 GCCTACATCGATCCCATGTCT 59.379 52.381 7.98 0.00 35.95 3.41
4908 7471 2.826128 GCCTACATCGATCCCATGTCTA 59.174 50.000 7.98 0.00 35.95 2.59
4909 7472 3.258372 GCCTACATCGATCCCATGTCTAA 59.742 47.826 7.98 0.00 35.95 2.10
4910 7473 4.619394 GCCTACATCGATCCCATGTCTAAG 60.619 50.000 7.98 2.31 35.95 2.18
4911 7474 4.081972 CCTACATCGATCCCATGTCTAAGG 60.082 50.000 7.98 6.74 35.95 2.69
4912 7475 3.576861 ACATCGATCCCATGTCTAAGGA 58.423 45.455 0.00 0.00 27.49 3.36
4913 7476 3.322254 ACATCGATCCCATGTCTAAGGAC 59.678 47.826 0.00 0.00 42.42 3.85
4914 7477 3.314307 TCGATCCCATGTCTAAGGACT 57.686 47.619 0.00 0.00 42.54 3.85
4915 7478 4.448720 TCGATCCCATGTCTAAGGACTA 57.551 45.455 0.00 0.00 42.54 2.59
4916 7479 4.800023 TCGATCCCATGTCTAAGGACTAA 58.200 43.478 0.00 0.00 42.54 2.24
4917 7480 5.205821 TCGATCCCATGTCTAAGGACTAAA 58.794 41.667 0.00 0.00 42.54 1.85
4918 7481 5.659525 TCGATCCCATGTCTAAGGACTAAAA 59.340 40.000 0.00 0.00 42.54 1.52
4919 7482 6.326583 TCGATCCCATGTCTAAGGACTAAAAT 59.673 38.462 0.00 0.00 42.54 1.82
4920 7483 7.507956 TCGATCCCATGTCTAAGGACTAAAATA 59.492 37.037 0.00 0.00 42.54 1.40
4921 7484 8.148351 CGATCCCATGTCTAAGGACTAAAATAA 58.852 37.037 0.00 0.00 42.54 1.40
4922 7485 9.274206 GATCCCATGTCTAAGGACTAAAATAAC 57.726 37.037 0.00 0.00 42.54 1.89
4923 7486 7.571025 TCCCATGTCTAAGGACTAAAATAACC 58.429 38.462 0.00 0.00 42.54 2.85
4924 7487 7.404980 TCCCATGTCTAAGGACTAAAATAACCT 59.595 37.037 0.00 0.00 42.54 3.50
4925 7488 8.711170 CCCATGTCTAAGGACTAAAATAACCTA 58.289 37.037 0.00 0.00 42.54 3.08
4926 7489 9.765795 CCATGTCTAAGGACTAAAATAACCTAG 57.234 37.037 0.00 0.00 42.54 3.02
4934 7497 8.024145 AGGACTAAAATAACCTAGATGTGAGG 57.976 38.462 0.00 0.00 40.22 3.86
4935 7498 7.071321 AGGACTAAAATAACCTAGATGTGAGGG 59.929 40.741 0.00 0.00 38.52 4.30
4936 7499 7.138054 ACTAAAATAACCTAGATGTGAGGGG 57.862 40.000 0.00 0.00 38.52 4.79
4937 7500 5.388599 AAAATAACCTAGATGTGAGGGGG 57.611 43.478 0.00 0.00 38.52 5.40
4938 7501 4.295905 AATAACCTAGATGTGAGGGGGA 57.704 45.455 0.00 0.00 38.52 4.81
4939 7502 2.182516 AACCTAGATGTGAGGGGGAG 57.817 55.000 0.00 0.00 38.52 4.30
4940 7503 1.019650 ACCTAGATGTGAGGGGGAGT 58.980 55.000 0.00 0.00 38.52 3.85
4941 7504 1.343478 ACCTAGATGTGAGGGGGAGTG 60.343 57.143 0.00 0.00 38.52 3.51
4942 7505 1.343478 CCTAGATGTGAGGGGGAGTGT 60.343 57.143 0.00 0.00 0.00 3.55
4943 7506 2.472029 CTAGATGTGAGGGGGAGTGTT 58.528 52.381 0.00 0.00 0.00 3.32
4944 7507 0.987294 AGATGTGAGGGGGAGTGTTG 59.013 55.000 0.00 0.00 0.00 3.33
4945 7508 0.984230 GATGTGAGGGGGAGTGTTGA 59.016 55.000 0.00 0.00 0.00 3.18
4946 7509 1.351017 GATGTGAGGGGGAGTGTTGAA 59.649 52.381 0.00 0.00 0.00 2.69
4947 7510 1.217916 TGTGAGGGGGAGTGTTGAAA 58.782 50.000 0.00 0.00 0.00 2.69
4948 7511 1.780309 TGTGAGGGGGAGTGTTGAAAT 59.220 47.619 0.00 0.00 0.00 2.17
4949 7512 2.983192 TGTGAGGGGGAGTGTTGAAATA 59.017 45.455 0.00 0.00 0.00 1.40
4950 7513 3.591527 TGTGAGGGGGAGTGTTGAAATAT 59.408 43.478 0.00 0.00 0.00 1.28
4951 7514 4.785914 TGTGAGGGGGAGTGTTGAAATATA 59.214 41.667 0.00 0.00 0.00 0.86
4952 7515 5.431731 TGTGAGGGGGAGTGTTGAAATATAT 59.568 40.000 0.00 0.00 0.00 0.86
4953 7516 6.069088 TGTGAGGGGGAGTGTTGAAATATATT 60.069 38.462 0.00 0.00 0.00 1.28
4954 7517 6.263168 GTGAGGGGGAGTGTTGAAATATATTG 59.737 42.308 0.00 0.00 0.00 1.90
4955 7518 6.069088 TGAGGGGGAGTGTTGAAATATATTGT 60.069 38.462 0.00 0.00 0.00 2.71
4956 7519 6.365520 AGGGGGAGTGTTGAAATATATTGTC 58.634 40.000 0.00 0.49 0.00 3.18
4957 7520 5.535030 GGGGGAGTGTTGAAATATATTGTCC 59.465 44.000 0.00 0.00 0.00 4.02
4958 7521 5.238650 GGGGAGTGTTGAAATATATTGTCCG 59.761 44.000 0.00 0.00 0.00 4.79
4959 7522 5.277828 GGGAGTGTTGAAATATATTGTCCGC 60.278 44.000 0.00 0.00 0.00 5.54
4960 7523 5.277828 GGAGTGTTGAAATATATTGTCCGCC 60.278 44.000 0.00 0.00 0.00 6.13
4961 7524 5.437060 AGTGTTGAAATATATTGTCCGCCT 58.563 37.500 0.00 0.00 0.00 5.52
4962 7525 5.527582 AGTGTTGAAATATATTGTCCGCCTC 59.472 40.000 0.00 0.00 0.00 4.70
4963 7526 4.819630 TGTTGAAATATATTGTCCGCCTCC 59.180 41.667 0.00 0.00 0.00 4.30
4964 7527 4.015872 TGAAATATATTGTCCGCCTCCC 57.984 45.455 0.00 0.00 0.00 4.30
4965 7528 3.650942 TGAAATATATTGTCCGCCTCCCT 59.349 43.478 0.00 0.00 0.00 4.20
4966 7529 3.983044 AATATATTGTCCGCCTCCCTC 57.017 47.619 0.00 0.00 0.00 4.30
4967 7530 1.640917 TATATTGTCCGCCTCCCTCC 58.359 55.000 0.00 0.00 0.00 4.30
4968 7531 0.399949 ATATTGTCCGCCTCCCTCCA 60.400 55.000 0.00 0.00 0.00 3.86
4969 7532 0.399949 TATTGTCCGCCTCCCTCCAT 60.400 55.000 0.00 0.00 0.00 3.41
4970 7533 1.700042 ATTGTCCGCCTCCCTCCATC 61.700 60.000 0.00 0.00 0.00 3.51
4971 7534 2.764128 GTCCGCCTCCCTCCATCA 60.764 66.667 0.00 0.00 0.00 3.07
4972 7535 2.444706 TCCGCCTCCCTCCATCAG 60.445 66.667 0.00 0.00 0.00 2.90
4973 7536 2.765807 CCGCCTCCCTCCATCAGT 60.766 66.667 0.00 0.00 0.00 3.41
4974 7537 2.370445 CCGCCTCCCTCCATCAGTT 61.370 63.158 0.00 0.00 0.00 3.16
4975 7538 1.144936 CGCCTCCCTCCATCAGTTC 59.855 63.158 0.00 0.00 0.00 3.01
4976 7539 1.144936 GCCTCCCTCCATCAGTTCG 59.855 63.158 0.00 0.00 0.00 3.95
4977 7540 1.826024 CCTCCCTCCATCAGTTCGG 59.174 63.158 0.00 0.00 0.00 4.30
4978 7541 0.687757 CCTCCCTCCATCAGTTCGGA 60.688 60.000 0.00 0.00 0.00 4.55
4979 7542 0.461961 CTCCCTCCATCAGTTCGGAC 59.538 60.000 0.00 0.00 0.00 4.79
4980 7543 0.041238 TCCCTCCATCAGTTCGGACT 59.959 55.000 0.00 0.00 36.25 3.85
4981 7544 0.905357 CCCTCCATCAGTTCGGACTT 59.095 55.000 0.00 0.00 32.54 3.01
4982 7545 1.279271 CCCTCCATCAGTTCGGACTTT 59.721 52.381 0.00 0.00 32.54 2.66
4983 7546 2.290323 CCCTCCATCAGTTCGGACTTTT 60.290 50.000 0.00 0.00 32.54 2.27
4984 7547 2.744202 CCTCCATCAGTTCGGACTTTTG 59.256 50.000 0.00 0.00 32.54 2.44
4985 7548 2.744202 CTCCATCAGTTCGGACTTTTGG 59.256 50.000 13.60 13.60 36.98 3.28
4986 7549 2.370519 TCCATCAGTTCGGACTTTTGGA 59.629 45.455 17.13 17.13 39.94 3.53
4987 7550 3.009033 TCCATCAGTTCGGACTTTTGGAT 59.991 43.478 17.13 4.78 38.50 3.41
4988 7551 3.127548 CCATCAGTTCGGACTTTTGGATG 59.872 47.826 14.35 13.52 37.46 3.51
4989 7552 3.762407 TCAGTTCGGACTTTTGGATGA 57.238 42.857 0.00 0.00 32.54 2.92
4990 7553 3.664107 TCAGTTCGGACTTTTGGATGAG 58.336 45.455 0.00 0.00 32.54 2.90
4991 7554 3.071023 TCAGTTCGGACTTTTGGATGAGT 59.929 43.478 0.00 0.00 32.54 3.41
4992 7555 3.815401 CAGTTCGGACTTTTGGATGAGTT 59.185 43.478 0.00 0.00 32.54 3.01
4993 7556 3.815401 AGTTCGGACTTTTGGATGAGTTG 59.185 43.478 0.00 0.00 29.87 3.16
4994 7557 2.778299 TCGGACTTTTGGATGAGTTGG 58.222 47.619 0.00 0.00 0.00 3.77
4995 7558 1.200020 CGGACTTTTGGATGAGTTGGC 59.800 52.381 0.00 0.00 0.00 4.52
4996 7559 2.519013 GGACTTTTGGATGAGTTGGCT 58.481 47.619 0.00 0.00 0.00 4.75
4997 7560 2.229784 GGACTTTTGGATGAGTTGGCTG 59.770 50.000 0.00 0.00 0.00 4.85
4998 7561 2.229784 GACTTTTGGATGAGTTGGCTGG 59.770 50.000 0.00 0.00 0.00 4.85
4999 7562 2.158475 ACTTTTGGATGAGTTGGCTGGA 60.158 45.455 0.00 0.00 0.00 3.86
5000 7563 2.905415 TTTGGATGAGTTGGCTGGAT 57.095 45.000 0.00 0.00 0.00 3.41
5001 7564 2.425143 TTGGATGAGTTGGCTGGATC 57.575 50.000 0.00 0.00 0.00 3.36
5002 7565 1.288188 TGGATGAGTTGGCTGGATCA 58.712 50.000 0.00 0.00 0.00 2.92
5003 7566 1.848388 TGGATGAGTTGGCTGGATCAT 59.152 47.619 0.00 0.00 35.16 2.45
5004 7567 2.228059 GGATGAGTTGGCTGGATCATG 58.772 52.381 0.00 0.00 32.68 3.07
5005 7568 2.158711 GGATGAGTTGGCTGGATCATGA 60.159 50.000 0.00 0.00 32.68 3.07
5006 7569 3.548770 GATGAGTTGGCTGGATCATGAA 58.451 45.455 0.00 0.00 32.68 2.57
5007 7570 3.657398 TGAGTTGGCTGGATCATGAAT 57.343 42.857 0.00 0.00 0.00 2.57
5008 7571 3.972133 TGAGTTGGCTGGATCATGAATT 58.028 40.909 0.00 0.00 0.00 2.17
5009 7572 3.949754 TGAGTTGGCTGGATCATGAATTC 59.050 43.478 0.00 0.00 0.00 2.17
5010 7573 3.949754 GAGTTGGCTGGATCATGAATTCA 59.050 43.478 11.26 11.26 0.00 2.57
5011 7574 4.346730 AGTTGGCTGGATCATGAATTCAA 58.653 39.130 13.09 0.00 0.00 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 2.300967 TGGGGTGCAGGACCTGATC 61.301 63.158 26.25 15.58 45.33 2.92
501 502 2.560151 GATTCGCGACGACAGCTCG 61.560 63.158 9.15 0.00 46.06 5.03
505 506 1.991430 CCTTGATTCGCGACGACAG 59.009 57.895 9.15 2.61 34.89 3.51
587 588 2.167219 CATGTGTAGGACGCCGCAG 61.167 63.158 0.00 0.00 0.00 5.18
602 603 1.964608 TTCGAGAGCAGGGAGGCATG 61.965 60.000 0.00 0.00 35.83 4.06
603 604 1.687146 TTCGAGAGCAGGGAGGCAT 60.687 57.895 0.00 0.00 35.83 4.40
698 699 2.037136 CCCGTTTGAGCTCCAGCAG 61.037 63.158 12.15 0.00 45.16 4.24
778 779 2.362632 CCCTCTTCCCCTCGTCGT 60.363 66.667 0.00 0.00 0.00 4.34
861 862 0.032130 TGTTGGTGTCACGAGAGCTC 59.968 55.000 5.27 5.27 0.00 4.09
977 978 1.551019 GGCAGGGACGTAGGGTTCTT 61.551 60.000 0.00 0.00 0.00 2.52
994 995 4.195225 TCGAAATTTAAATGTTGGGGGC 57.805 40.909 0.39 0.00 0.00 5.80
1136 1177 3.444388 GTCTTCATCTGGTACGTCTCCTT 59.556 47.826 10.35 0.00 0.00 3.36
1152 1193 2.343758 GCTCCAGGTGCGTCTTCA 59.656 61.111 0.00 0.00 0.00 3.02
1337 1378 0.324943 AGGTAGTTCATGCAGCGGTT 59.675 50.000 0.00 0.00 0.00 4.44
2099 2484 1.601903 TGTGCGGTCATGTCAGTTTTC 59.398 47.619 0.00 0.00 0.00 2.29
2205 2597 1.278127 ACGAGGGTACAAGGGACATTG 59.722 52.381 0.00 0.00 36.22 2.82
2220 2612 1.472728 GGGTGTATGTGCCTAACGAGG 60.473 57.143 0.00 0.00 46.93 4.63
2221 2613 1.206132 TGGGTGTATGTGCCTAACGAG 59.794 52.381 0.00 0.00 0.00 4.18
2224 2616 4.013728 TGAATTGGGTGTATGTGCCTAAC 58.986 43.478 0.00 0.00 0.00 2.34
2234 2626 2.666272 TGCTTGGTGAATTGGGTGTA 57.334 45.000 0.00 0.00 0.00 2.90
2235 2627 1.619827 CATGCTTGGTGAATTGGGTGT 59.380 47.619 0.00 0.00 0.00 4.16
2264 2664 3.840078 TCAAGGAGGAATGTCATCTGTCA 59.160 43.478 0.00 0.00 0.00 3.58
2267 2667 5.752892 CATTCAAGGAGGAATGTCATCTG 57.247 43.478 7.54 0.00 45.73 2.90
2331 2733 3.000727 CTCGCACTTTTTAATCTCGGGT 58.999 45.455 0.00 0.00 0.00 5.28
2405 2807 1.066858 GGTCGAGCATCTTGGTGAAGA 60.067 52.381 10.30 0.00 42.53 2.87
2417 2819 0.028902 CACGATATCACGGTCGAGCA 59.971 55.000 15.89 0.00 40.11 4.26
2440 2842 5.906113 TCAACTACTCTCTTCCTCATGAC 57.094 43.478 0.00 0.00 0.00 3.06
2832 3244 3.572255 TCCATTTACAAAACTGACCTGCC 59.428 43.478 0.00 0.00 0.00 4.85
3227 3650 4.565861 GGCTCCCTTGCTTAGTTTAGACTT 60.566 45.833 0.00 0.00 37.33 3.01
3366 5588 1.075542 GAACACATCATCGCGGTCAA 58.924 50.000 6.13 0.00 0.00 3.18
3393 5615 5.422970 TCTTCCCGCTTCAGTTTTAGGTATA 59.577 40.000 0.00 0.00 0.00 1.47
3430 5652 1.730501 TCTTCTCCTCAATTGCAGCG 58.269 50.000 0.00 0.00 0.00 5.18
3614 5836 0.449388 CTGCGCACAATCTCCCTTTC 59.551 55.000 5.66 0.00 0.00 2.62
3815 6376 6.972722 AGTCTTAGATATGAAGCTACCGAAC 58.027 40.000 0.00 0.00 0.00 3.95
4173 6734 2.026262 AGTTGCTTCACATTACCCGGAT 60.026 45.455 0.73 0.00 0.00 4.18
4182 6743 7.661536 TCCTATACTAAGAGTTGCTTCACAT 57.338 36.000 0.00 0.00 38.05 3.21
4315 6876 2.637382 TCACACCTTTGCAGAGATACCA 59.363 45.455 5.68 0.00 0.00 3.25
4505 7066 2.098607 GGCGGATACAAGTTAAAAGCCC 59.901 50.000 0.00 0.00 36.34 5.19
4607 7170 3.382546 GCCATAGTGACCAAAGCAATGAT 59.617 43.478 0.00 0.00 0.00 2.45
4741 7304 5.527582 AGGCGGACAATATATTTCAACAGTC 59.472 40.000 0.00 0.00 0.00 3.51
4744 7307 4.819630 GGAGGCGGACAATATATTTCAACA 59.180 41.667 0.00 0.00 0.00 3.33
4745 7308 4.215613 GGGAGGCGGACAATATATTTCAAC 59.784 45.833 0.00 0.00 0.00 3.18
4746 7309 4.104102 AGGGAGGCGGACAATATATTTCAA 59.896 41.667 0.00 0.00 0.00 2.69
4747 7310 3.650942 AGGGAGGCGGACAATATATTTCA 59.349 43.478 0.00 0.00 0.00 2.69
4748 7311 4.254492 GAGGGAGGCGGACAATATATTTC 58.746 47.826 0.00 0.00 0.00 2.17
4749 7312 3.009143 GGAGGGAGGCGGACAATATATTT 59.991 47.826 0.00 0.00 0.00 1.40
4750 7313 2.572104 GGAGGGAGGCGGACAATATATT 59.428 50.000 0.00 0.00 0.00 1.28
4751 7314 2.188817 GGAGGGAGGCGGACAATATAT 58.811 52.381 0.00 0.00 0.00 0.86
4752 7315 1.132977 TGGAGGGAGGCGGACAATATA 60.133 52.381 0.00 0.00 0.00 0.86
4753 7316 0.399949 TGGAGGGAGGCGGACAATAT 60.400 55.000 0.00 0.00 0.00 1.28
4754 7317 0.399949 ATGGAGGGAGGCGGACAATA 60.400 55.000 0.00 0.00 0.00 1.90
4755 7318 1.694169 ATGGAGGGAGGCGGACAAT 60.694 57.895 0.00 0.00 0.00 2.71
4756 7319 2.285368 ATGGAGGGAGGCGGACAA 60.285 61.111 0.00 0.00 0.00 3.18
4757 7320 2.764128 GATGGAGGGAGGCGGACA 60.764 66.667 0.00 0.00 0.00 4.02
4758 7321 2.764128 TGATGGAGGGAGGCGGAC 60.764 66.667 0.00 0.00 0.00 4.79
4759 7322 2.444706 CTGATGGAGGGAGGCGGA 60.445 66.667 0.00 0.00 0.00 5.54
4760 7323 1.048724 TAACTGATGGAGGGAGGCGG 61.049 60.000 0.00 0.00 0.00 6.13
4761 7324 0.390860 CTAACTGATGGAGGGAGGCG 59.609 60.000 0.00 0.00 0.00 5.52
4762 7325 0.761802 CCTAACTGATGGAGGGAGGC 59.238 60.000 0.00 0.00 0.00 4.70
4763 7326 2.043227 GTCCTAACTGATGGAGGGAGG 58.957 57.143 0.00 0.00 32.36 4.30
4764 7327 3.039252 AGTCCTAACTGATGGAGGGAG 57.961 52.381 0.00 0.00 33.32 4.30
4765 7328 3.491766 AAGTCCTAACTGATGGAGGGA 57.508 47.619 0.00 0.00 35.36 4.20
4766 7329 4.265073 CAAAAGTCCTAACTGATGGAGGG 58.735 47.826 0.00 0.00 35.36 4.30
4767 7330 4.019321 TCCAAAAGTCCTAACTGATGGAGG 60.019 45.833 7.94 0.00 42.09 4.30
4768 7331 5.165961 TCCAAAAGTCCTAACTGATGGAG 57.834 43.478 7.94 0.00 42.09 3.86
4769 7332 5.250543 TCATCCAAAAGTCCTAACTGATGGA 59.749 40.000 12.33 12.33 46.68 3.41
4770 7333 5.500234 TCATCCAAAAGTCCTAACTGATGG 58.500 41.667 0.00 4.37 40.74 3.51
4771 7334 6.176183 ACTCATCCAAAAGTCCTAACTGATG 58.824 40.000 0.00 0.00 35.25 3.07
4772 7335 6.380079 ACTCATCCAAAAGTCCTAACTGAT 57.620 37.500 0.00 0.00 35.36 2.90
4773 7336 5.825593 ACTCATCCAAAAGTCCTAACTGA 57.174 39.130 0.00 0.00 35.36 3.41
4774 7337 6.092807 GCTAACTCATCCAAAAGTCCTAACTG 59.907 42.308 0.00 0.00 35.36 3.16
4775 7338 6.013293 AGCTAACTCATCCAAAAGTCCTAACT 60.013 38.462 0.00 0.00 37.32 2.24
4776 7339 6.174049 AGCTAACTCATCCAAAAGTCCTAAC 58.826 40.000 0.00 0.00 0.00 2.34
4777 7340 6.374417 AGCTAACTCATCCAAAAGTCCTAA 57.626 37.500 0.00 0.00 0.00 2.69
4778 7341 6.895756 TCTAGCTAACTCATCCAAAAGTCCTA 59.104 38.462 0.00 0.00 0.00 2.94
4779 7342 4.917906 AGCTAACTCATCCAAAAGTCCT 57.082 40.909 0.00 0.00 0.00 3.85
4780 7343 5.978814 TCTAGCTAACTCATCCAAAAGTCC 58.021 41.667 0.00 0.00 0.00 3.85
4781 7344 5.522097 GCTCTAGCTAACTCATCCAAAAGTC 59.478 44.000 0.00 0.00 38.21 3.01
4782 7345 5.046304 TGCTCTAGCTAACTCATCCAAAAGT 60.046 40.000 3.26 0.00 42.66 2.66
4783 7346 5.423015 TGCTCTAGCTAACTCATCCAAAAG 58.577 41.667 3.26 0.00 42.66 2.27
4784 7347 5.420725 TGCTCTAGCTAACTCATCCAAAA 57.579 39.130 3.26 0.00 42.66 2.44
4785 7348 5.129320 TCATGCTCTAGCTAACTCATCCAAA 59.871 40.000 3.26 0.00 42.66 3.28
4786 7349 4.651045 TCATGCTCTAGCTAACTCATCCAA 59.349 41.667 3.26 0.00 42.66 3.53
4787 7350 4.218312 TCATGCTCTAGCTAACTCATCCA 58.782 43.478 3.26 0.00 42.66 3.41
4788 7351 4.862902 TCATGCTCTAGCTAACTCATCC 57.137 45.455 3.26 0.00 42.66 3.51
4789 7352 6.927936 TGAATTCATGCTCTAGCTAACTCATC 59.072 38.462 3.38 0.00 42.66 2.92
4790 7353 6.824553 TGAATTCATGCTCTAGCTAACTCAT 58.175 36.000 3.38 0.00 42.66 2.90
4791 7354 6.225981 TGAATTCATGCTCTAGCTAACTCA 57.774 37.500 3.38 0.00 42.66 3.41
4792 7355 7.727331 ATTGAATTCATGCTCTAGCTAACTC 57.273 36.000 9.40 0.00 42.66 3.01
4793 7356 9.217278 CATATTGAATTCATGCTCTAGCTAACT 57.783 33.333 9.40 0.00 42.66 2.24
4794 7357 8.449397 CCATATTGAATTCATGCTCTAGCTAAC 58.551 37.037 9.40 0.00 42.66 2.34
4795 7358 8.159447 ACCATATTGAATTCATGCTCTAGCTAA 58.841 33.333 9.40 0.00 42.66 3.09
4796 7359 7.683578 ACCATATTGAATTCATGCTCTAGCTA 58.316 34.615 9.40 0.00 42.66 3.32
4797 7360 6.540995 ACCATATTGAATTCATGCTCTAGCT 58.459 36.000 9.40 0.00 42.66 3.32
4798 7361 6.814506 ACCATATTGAATTCATGCTCTAGC 57.185 37.500 9.40 0.00 42.50 3.42
4799 7362 9.662947 TGATACCATATTGAATTCATGCTCTAG 57.337 33.333 9.40 0.00 0.00 2.43
4800 7363 9.662947 CTGATACCATATTGAATTCATGCTCTA 57.337 33.333 9.40 0.00 0.00 2.43
4801 7364 8.380867 TCTGATACCATATTGAATTCATGCTCT 58.619 33.333 9.40 0.00 0.00 4.09
4802 7365 8.557592 TCTGATACCATATTGAATTCATGCTC 57.442 34.615 9.40 3.25 0.00 4.26
4803 7366 8.790718 GTTCTGATACCATATTGAATTCATGCT 58.209 33.333 9.40 0.08 0.00 3.79
4804 7367 8.025445 GGTTCTGATACCATATTGAATTCATGC 58.975 37.037 9.40 0.00 38.12 4.06
4805 7368 9.070179 TGGTTCTGATACCATATTGAATTCATG 57.930 33.333 9.40 4.74 43.14 3.07
4839 7402 2.687935 GTTGGCAAGGTCTTGAACTCAA 59.312 45.455 14.20 9.10 42.93 3.02
4840 7403 2.297701 GTTGGCAAGGTCTTGAACTCA 58.702 47.619 14.20 4.27 42.93 3.41
4841 7404 1.264288 CGTTGGCAAGGTCTTGAACTC 59.736 52.381 14.20 2.05 42.93 3.01
4842 7405 1.308998 CGTTGGCAAGGTCTTGAACT 58.691 50.000 14.20 0.00 42.93 3.01
4843 7406 0.317854 GCGTTGGCAAGGTCTTGAAC 60.318 55.000 19.80 9.31 42.93 3.18
4844 7407 2.029743 GCGTTGGCAAGGTCTTGAA 58.970 52.632 19.80 0.00 42.93 2.69
4845 7408 3.744559 GCGTTGGCAAGGTCTTGA 58.255 55.556 19.80 0.00 42.93 3.02
4855 7418 6.879962 TCGTTATATTTAATACTGCGTTGGC 58.120 36.000 0.00 0.00 40.52 4.52
4856 7419 9.525007 GAATCGTTATATTTAATACTGCGTTGG 57.475 33.333 0.00 0.00 0.00 3.77
4859 7422 8.433126 GCAGAATCGTTATATTTAATACTGCGT 58.567 33.333 0.00 0.00 36.91 5.24
4860 7423 8.792831 GCAGAATCGTTATATTTAATACTGCG 57.207 34.615 0.00 2.47 36.91 5.18
4861 7424 7.898309 CCGCAGAATCGTTATATTTAATACTGC 59.102 37.037 0.00 0.00 41.18 4.40
4862 7425 7.898309 GCCGCAGAATCGTTATATTTAATACTG 59.102 37.037 0.00 0.00 0.00 2.74
4863 7426 7.064253 GGCCGCAGAATCGTTATATTTAATACT 59.936 37.037 0.00 0.00 0.00 2.12
4864 7427 7.064253 AGGCCGCAGAATCGTTATATTTAATAC 59.936 37.037 0.00 0.00 0.00 1.89
4865 7428 7.101054 AGGCCGCAGAATCGTTATATTTAATA 58.899 34.615 0.00 0.00 0.00 0.98
4866 7429 5.938125 AGGCCGCAGAATCGTTATATTTAAT 59.062 36.000 0.00 0.00 0.00 1.40
4867 7430 5.302360 AGGCCGCAGAATCGTTATATTTAA 58.698 37.500 0.00 0.00 0.00 1.52
4868 7431 4.890088 AGGCCGCAGAATCGTTATATTTA 58.110 39.130 0.00 0.00 0.00 1.40
4869 7432 3.740115 AGGCCGCAGAATCGTTATATTT 58.260 40.909 0.00 0.00 0.00 1.40
4870 7433 3.402628 AGGCCGCAGAATCGTTATATT 57.597 42.857 0.00 0.00 0.00 1.28
4871 7434 3.257375 TGTAGGCCGCAGAATCGTTATAT 59.743 43.478 0.00 0.00 0.00 0.86
4872 7435 2.624364 TGTAGGCCGCAGAATCGTTATA 59.376 45.455 0.00 0.00 0.00 0.98
4873 7436 1.411246 TGTAGGCCGCAGAATCGTTAT 59.589 47.619 0.00 0.00 0.00 1.89
4874 7437 0.818938 TGTAGGCCGCAGAATCGTTA 59.181 50.000 0.00 0.00 0.00 3.18
4875 7438 0.178068 ATGTAGGCCGCAGAATCGTT 59.822 50.000 8.88 0.00 0.00 3.85
4876 7439 0.249489 GATGTAGGCCGCAGAATCGT 60.249 55.000 8.88 0.00 0.00 3.73
4877 7440 1.278172 CGATGTAGGCCGCAGAATCG 61.278 60.000 12.57 12.57 0.00 3.34
4878 7441 0.032130 TCGATGTAGGCCGCAGAATC 59.968 55.000 8.88 3.64 0.00 2.52
4879 7442 0.681733 ATCGATGTAGGCCGCAGAAT 59.318 50.000 0.00 0.00 0.00 2.40
4880 7443 0.032130 GATCGATGTAGGCCGCAGAA 59.968 55.000 0.54 0.00 0.00 3.02
4881 7444 1.660355 GATCGATGTAGGCCGCAGA 59.340 57.895 0.54 2.74 0.00 4.26
4882 7445 1.373497 GGATCGATGTAGGCCGCAG 60.373 63.158 0.54 0.00 0.00 5.18
4883 7446 2.734591 GGATCGATGTAGGCCGCA 59.265 61.111 0.54 0.22 0.00 5.69
4884 7447 2.048127 GGGATCGATGTAGGCCGC 60.048 66.667 0.54 0.00 0.00 6.53
4885 7448 0.390340 CATGGGATCGATGTAGGCCG 60.390 60.000 0.54 0.00 0.00 6.13
4886 7449 0.687354 ACATGGGATCGATGTAGGCC 59.313 55.000 0.54 0.00 32.12 5.19
4887 7450 1.620819 AGACATGGGATCGATGTAGGC 59.379 52.381 0.54 0.00 34.10 3.93
4888 7451 4.081972 CCTTAGACATGGGATCGATGTAGG 60.082 50.000 0.54 8.46 34.10 3.18
4889 7452 4.767409 TCCTTAGACATGGGATCGATGTAG 59.233 45.833 0.54 4.23 34.10 2.74
4890 7453 4.523173 GTCCTTAGACATGGGATCGATGTA 59.477 45.833 0.54 0.00 42.99 2.29
4891 7454 3.322254 GTCCTTAGACATGGGATCGATGT 59.678 47.826 0.54 8.36 42.99 3.06
4892 7455 3.576118 AGTCCTTAGACATGGGATCGATG 59.424 47.826 0.54 0.00 46.15 3.84
4893 7456 3.850752 AGTCCTTAGACATGGGATCGAT 58.149 45.455 0.00 0.00 46.15 3.59
4894 7457 3.314307 AGTCCTTAGACATGGGATCGA 57.686 47.619 0.00 0.00 46.15 3.59
4895 7458 5.531122 TTTAGTCCTTAGACATGGGATCG 57.469 43.478 0.00 0.00 46.15 3.69
4896 7459 9.274206 GTTATTTTAGTCCTTAGACATGGGATC 57.726 37.037 0.00 0.00 46.15 3.36
4897 7460 8.218488 GGTTATTTTAGTCCTTAGACATGGGAT 58.782 37.037 0.00 0.00 46.15 3.85
4898 7461 7.404980 AGGTTATTTTAGTCCTTAGACATGGGA 59.595 37.037 0.00 0.00 46.15 4.37
4899 7462 7.574607 AGGTTATTTTAGTCCTTAGACATGGG 58.425 38.462 0.00 0.00 46.15 4.00
4900 7463 9.765795 CTAGGTTATTTTAGTCCTTAGACATGG 57.234 37.037 0.00 0.00 46.15 3.66
4908 7471 8.487028 CCTCACATCTAGGTTATTTTAGTCCTT 58.513 37.037 0.00 0.00 0.00 3.36
4909 7472 7.071321 CCCTCACATCTAGGTTATTTTAGTCCT 59.929 40.741 0.00 0.00 31.70 3.85
4910 7473 7.217906 CCCTCACATCTAGGTTATTTTAGTCC 58.782 42.308 0.00 0.00 31.70 3.85
4911 7474 7.217906 CCCCTCACATCTAGGTTATTTTAGTC 58.782 42.308 0.00 0.00 31.70 2.59
4912 7475 6.101296 CCCCCTCACATCTAGGTTATTTTAGT 59.899 42.308 0.00 0.00 31.70 2.24
4913 7476 6.329197 TCCCCCTCACATCTAGGTTATTTTAG 59.671 42.308 0.00 0.00 31.70 1.85
4914 7477 6.214278 TCCCCCTCACATCTAGGTTATTTTA 58.786 40.000 0.00 0.00 31.70 1.52
4915 7478 5.043762 TCCCCCTCACATCTAGGTTATTTT 58.956 41.667 0.00 0.00 31.70 1.82
4916 7479 4.641868 TCCCCCTCACATCTAGGTTATTT 58.358 43.478 0.00 0.00 31.70 1.40
4917 7480 4.235372 CTCCCCCTCACATCTAGGTTATT 58.765 47.826 0.00 0.00 31.70 1.40
4918 7481 3.210074 ACTCCCCCTCACATCTAGGTTAT 59.790 47.826 0.00 0.00 31.70 1.89
4919 7482 2.590611 ACTCCCCCTCACATCTAGGTTA 59.409 50.000 0.00 0.00 31.70 2.85
4920 7483 1.366435 ACTCCCCCTCACATCTAGGTT 59.634 52.381 0.00 0.00 31.70 3.50
4921 7484 1.019650 ACTCCCCCTCACATCTAGGT 58.980 55.000 0.00 0.00 31.70 3.08
4922 7485 1.343478 ACACTCCCCCTCACATCTAGG 60.343 57.143 0.00 0.00 0.00 3.02
4923 7486 2.166907 ACACTCCCCCTCACATCTAG 57.833 55.000 0.00 0.00 0.00 2.43
4924 7487 2.187958 CAACACTCCCCCTCACATCTA 58.812 52.381 0.00 0.00 0.00 1.98
4925 7488 0.987294 CAACACTCCCCCTCACATCT 59.013 55.000 0.00 0.00 0.00 2.90
4926 7489 0.984230 TCAACACTCCCCCTCACATC 59.016 55.000 0.00 0.00 0.00 3.06
4927 7490 1.444933 TTCAACACTCCCCCTCACAT 58.555 50.000 0.00 0.00 0.00 3.21
4928 7491 1.217916 TTTCAACACTCCCCCTCACA 58.782 50.000 0.00 0.00 0.00 3.58
4929 7492 2.586648 ATTTCAACACTCCCCCTCAC 57.413 50.000 0.00 0.00 0.00 3.51
4930 7493 6.069088 ACAATATATTTCAACACTCCCCCTCA 60.069 38.462 0.00 0.00 0.00 3.86
4931 7494 6.365520 ACAATATATTTCAACACTCCCCCTC 58.634 40.000 0.00 0.00 0.00 4.30
4932 7495 6.341408 ACAATATATTTCAACACTCCCCCT 57.659 37.500 0.00 0.00 0.00 4.79
4933 7496 5.535030 GGACAATATATTTCAACACTCCCCC 59.465 44.000 0.00 0.00 0.00 5.40
4934 7497 5.238650 CGGACAATATATTTCAACACTCCCC 59.761 44.000 0.00 0.00 0.00 4.81
4935 7498 5.277828 GCGGACAATATATTTCAACACTCCC 60.278 44.000 0.00 0.00 0.00 4.30
4936 7499 5.277828 GGCGGACAATATATTTCAACACTCC 60.278 44.000 0.00 0.00 0.00 3.85
4937 7500 5.527582 AGGCGGACAATATATTTCAACACTC 59.472 40.000 0.00 0.00 0.00 3.51
4938 7501 5.437060 AGGCGGACAATATATTTCAACACT 58.563 37.500 0.00 0.00 0.00 3.55
4939 7502 5.277828 GGAGGCGGACAATATATTTCAACAC 60.278 44.000 0.00 0.00 0.00 3.32
4940 7503 4.819630 GGAGGCGGACAATATATTTCAACA 59.180 41.667 0.00 0.00 0.00 3.33
4941 7504 4.215613 GGGAGGCGGACAATATATTTCAAC 59.784 45.833 0.00 0.00 0.00 3.18
4942 7505 4.104102 AGGGAGGCGGACAATATATTTCAA 59.896 41.667 0.00 0.00 0.00 2.69
4943 7506 3.650942 AGGGAGGCGGACAATATATTTCA 59.349 43.478 0.00 0.00 0.00 2.69
4944 7507 4.254492 GAGGGAGGCGGACAATATATTTC 58.746 47.826 0.00 0.00 0.00 2.17
4945 7508 3.009143 GGAGGGAGGCGGACAATATATTT 59.991 47.826 0.00 0.00 0.00 1.40
4946 7509 2.572104 GGAGGGAGGCGGACAATATATT 59.428 50.000 0.00 0.00 0.00 1.28
4947 7510 2.188817 GGAGGGAGGCGGACAATATAT 58.811 52.381 0.00 0.00 0.00 0.86
4948 7511 1.132977 TGGAGGGAGGCGGACAATATA 60.133 52.381 0.00 0.00 0.00 0.86
4949 7512 0.399949 TGGAGGGAGGCGGACAATAT 60.400 55.000 0.00 0.00 0.00 1.28
4950 7513 0.399949 ATGGAGGGAGGCGGACAATA 60.400 55.000 0.00 0.00 0.00 1.90
4951 7514 1.694169 ATGGAGGGAGGCGGACAAT 60.694 57.895 0.00 0.00 0.00 2.71
4952 7515 2.285368 ATGGAGGGAGGCGGACAA 60.285 61.111 0.00 0.00 0.00 3.18
4953 7516 2.764128 GATGGAGGGAGGCGGACA 60.764 66.667 0.00 0.00 0.00 4.02
4954 7517 2.764128 TGATGGAGGGAGGCGGAC 60.764 66.667 0.00 0.00 0.00 4.79
4955 7518 2.444706 CTGATGGAGGGAGGCGGA 60.445 66.667 0.00 0.00 0.00 5.54
4956 7519 2.317149 GAACTGATGGAGGGAGGCGG 62.317 65.000 0.00 0.00 0.00 6.13
4957 7520 1.144936 GAACTGATGGAGGGAGGCG 59.855 63.158 0.00 0.00 0.00 5.52
4958 7521 1.144936 CGAACTGATGGAGGGAGGC 59.855 63.158 0.00 0.00 0.00 4.70
4959 7522 0.687757 TCCGAACTGATGGAGGGAGG 60.688 60.000 0.00 0.00 0.00 4.30
4960 7523 0.461961 GTCCGAACTGATGGAGGGAG 59.538 60.000 0.00 0.00 34.21 4.30
4961 7524 0.041238 AGTCCGAACTGATGGAGGGA 59.959 55.000 0.00 0.00 34.21 4.20
4962 7525 0.905357 AAGTCCGAACTGATGGAGGG 59.095 55.000 0.00 0.00 35.36 4.30
4963 7526 2.744202 CAAAAGTCCGAACTGATGGAGG 59.256 50.000 0.00 0.00 35.36 4.30
4964 7527 2.744202 CCAAAAGTCCGAACTGATGGAG 59.256 50.000 0.36 0.00 41.39 3.86
4965 7528 2.370519 TCCAAAAGTCCGAACTGATGGA 59.629 45.455 4.92 4.92 43.51 3.41
4966 7529 2.778299 TCCAAAAGTCCGAACTGATGG 58.222 47.619 0.24 0.24 40.74 3.51
4967 7530 4.002982 TCATCCAAAAGTCCGAACTGATG 58.997 43.478 0.00 0.00 35.25 3.07
4968 7531 4.256920 CTCATCCAAAAGTCCGAACTGAT 58.743 43.478 0.00 0.00 35.36 2.90
4969 7532 3.071023 ACTCATCCAAAAGTCCGAACTGA 59.929 43.478 0.00 0.00 35.36 3.41
4970 7533 3.403038 ACTCATCCAAAAGTCCGAACTG 58.597 45.455 0.00 0.00 35.36 3.16
4971 7534 3.771577 ACTCATCCAAAAGTCCGAACT 57.228 42.857 0.00 0.00 37.32 3.01
4972 7535 3.058224 CCAACTCATCCAAAAGTCCGAAC 60.058 47.826 0.00 0.00 0.00 3.95
4973 7536 3.146066 CCAACTCATCCAAAAGTCCGAA 58.854 45.455 0.00 0.00 0.00 4.30
4974 7537 2.778299 CCAACTCATCCAAAAGTCCGA 58.222 47.619 0.00 0.00 0.00 4.55
4975 7538 1.200020 GCCAACTCATCCAAAAGTCCG 59.800 52.381 0.00 0.00 0.00 4.79
4976 7539 2.229784 CAGCCAACTCATCCAAAAGTCC 59.770 50.000 0.00 0.00 0.00 3.85
4977 7540 2.229784 CCAGCCAACTCATCCAAAAGTC 59.770 50.000 0.00 0.00 0.00 3.01
4978 7541 2.158475 TCCAGCCAACTCATCCAAAAGT 60.158 45.455 0.00 0.00 0.00 2.66
4979 7542 2.517959 TCCAGCCAACTCATCCAAAAG 58.482 47.619 0.00 0.00 0.00 2.27
4980 7543 2.673775 TCCAGCCAACTCATCCAAAA 57.326 45.000 0.00 0.00 0.00 2.44
4981 7544 2.041485 TGATCCAGCCAACTCATCCAAA 59.959 45.455 0.00 0.00 0.00 3.28
4982 7545 1.634973 TGATCCAGCCAACTCATCCAA 59.365 47.619 0.00 0.00 0.00 3.53
4983 7546 1.288188 TGATCCAGCCAACTCATCCA 58.712 50.000 0.00 0.00 0.00 3.41
4984 7547 2.158711 TCATGATCCAGCCAACTCATCC 60.159 50.000 0.00 0.00 0.00 3.51
4985 7548 3.204306 TCATGATCCAGCCAACTCATC 57.796 47.619 0.00 0.00 0.00 2.92
4986 7549 3.657398 TTCATGATCCAGCCAACTCAT 57.343 42.857 0.00 0.00 0.00 2.90
4987 7550 3.657398 ATTCATGATCCAGCCAACTCA 57.343 42.857 0.00 0.00 0.00 3.41
4988 7551 3.949754 TGAATTCATGATCCAGCCAACTC 59.050 43.478 3.38 0.00 0.00 3.01
4989 7552 3.972133 TGAATTCATGATCCAGCCAACT 58.028 40.909 3.38 0.00 0.00 3.16
4990 7553 4.724074 TTGAATTCATGATCCAGCCAAC 57.276 40.909 9.40 0.00 0.00 3.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.