Multiple sequence alignment - TraesCS5D01G064400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G064400 chr5D 100.000 5452 0 0 1 5452 59831720 59826269 0.000000e+00 10069.0
1 TraesCS5D01G064400 chr5D 78.338 337 38 19 635 953 59849314 59848995 9.330000e-43 185.0
2 TraesCS5D01G064400 chr5D 77.350 234 46 5 139 370 59885890 59885662 1.230000e-26 132.0
3 TraesCS5D01G064400 chr5D 83.333 138 22 1 2199 2335 41036895 41036758 5.730000e-25 126.0
4 TraesCS5D01G064400 chr5D 80.892 157 26 3 2199 2354 135059417 135059264 2.670000e-23 121.0
5 TraesCS5D01G064400 chr5B 90.975 2770 141 50 3 2720 70907975 70910687 0.000000e+00 3629.0
6 TraesCS5D01G064400 chr5B 95.975 944 34 4 2719 3662 70910793 70911732 0.000000e+00 1530.0
7 TraesCS5D01G064400 chr5B 80.020 981 106 46 4008 4943 70912877 70913812 1.280000e-180 643.0
8 TraesCS5D01G064400 chr5B 87.454 271 32 2 3663 3931 70911772 70912042 1.470000e-80 311.0
9 TraesCS5D01G064400 chr5B 87.736 212 24 2 3070 3281 70914278 70914487 4.220000e-61 246.0
10 TraesCS5D01G064400 chr5B 86.449 214 15 5 5253 5452 70914546 70914759 7.110000e-54 222.0
11 TraesCS5D01G064400 chr5B 89.809 157 16 0 5083 5239 70913855 70914011 9.260000e-48 202.0
12 TraesCS5D01G064400 chr5B 100.000 41 0 0 1297 1337 345525687 345525727 5.860000e-10 76.8
13 TraesCS5D01G064400 chr5A 88.631 1636 80 33 591 2174 48175599 48174018 0.000000e+00 1893.0
14 TraesCS5D01G064400 chr5A 90.401 1323 100 15 2362 3668 48173674 48172363 0.000000e+00 1714.0
15 TraesCS5D01G064400 chr5A 81.113 1186 130 49 3663 4805 48172329 48171195 0.000000e+00 863.0
16 TraesCS5D01G064400 chr5A 86.612 605 70 4 3 606 48176219 48175625 0.000000e+00 658.0
17 TraesCS5D01G064400 chr5A 87.264 212 25 2 3070 3281 48170482 48170273 1.960000e-59 241.0
18 TraesCS5D01G064400 chr5A 86.190 210 15 5 5257 5452 48170210 48170001 1.190000e-51 215.0
19 TraesCS5D01G064400 chr5A 87.047 193 21 3 5056 5245 48170937 48170746 1.190000e-51 215.0
20 TraesCS5D01G064400 chr5A 77.912 249 32 14 720 953 48186318 48186078 3.430000e-27 134.0
21 TraesCS5D01G064400 chr5A 77.778 108 19 4 195 299 626985245 626985140 1.640000e-05 62.1
22 TraesCS5D01G064400 chr6B 93.333 255 12 3 970 1223 687536500 687536250 6.670000e-99 372.0
23 TraesCS5D01G064400 chr6B 84.058 138 20 2 2199 2335 571740096 571739960 1.230000e-26 132.0
24 TraesCS5D01G064400 chr4B 92.913 254 12 3 970 1223 640474872 640475119 1.120000e-96 364.0
25 TraesCS5D01G064400 chr4B 92.126 254 17 1 970 1223 524674152 524673902 6.720000e-94 355.0
26 TraesCS5D01G064400 chr7B 92.520 254 16 1 970 1223 312349503 312349253 1.440000e-95 361.0
27 TraesCS5D01G064400 chr1B 92.520 254 13 3 970 1223 118403042 118403289 5.190000e-95 359.0
28 TraesCS5D01G064400 chr3A 91.732 254 15 3 970 1223 22148991 22148744 1.120000e-91 348.0
29 TraesCS5D01G064400 chr4A 96.209 211 7 1 1019 1228 23595596 23595806 1.450000e-90 344.0
30 TraesCS5D01G064400 chr4A 84.416 154 23 1 2201 2354 636103515 636103667 3.400000e-32 150.0
31 TraesCS5D01G064400 chr6D 86.861 137 15 3 2199 2333 436759251 436759116 3.400000e-32 150.0
32 TraesCS5D01G064400 chr1D 83.974 156 20 5 2199 2352 451266204 451266356 1.580000e-30 145.0
33 TraesCS5D01G064400 chr2B 81.098 164 22 6 2199 2354 544039368 544039206 7.420000e-24 122.0
34 TraesCS5D01G064400 chr2B 81.098 164 22 6 2199 2354 544470821 544470659 7.420000e-24 122.0
35 TraesCS5D01G064400 chr2B 78.448 116 16 7 2200 2310 778428044 778428155 3.520000e-07 67.6
36 TraesCS5D01G064400 chr2B 100.000 31 0 0 2326 2356 497047157 497047187 2.120000e-04 58.4
37 TraesCS5D01G064400 chr7A 95.745 47 0 2 1296 1341 369476277 369476322 2.110000e-09 75.0
38 TraesCS5D01G064400 chr7A 92.000 50 2 2 1291 1340 4525666 4525619 9.800000e-08 69.4
39 TraesCS5D01G064400 chr7A 91.837 49 3 1 1290 1338 501064840 501064793 3.520000e-07 67.6
40 TraesCS5D01G064400 chr2A 90.909 55 2 2 1285 1338 46358103 46358051 2.720000e-08 71.3
41 TraesCS5D01G064400 chr3D 92.000 50 3 1 1289 1338 582913500 582913452 9.800000e-08 69.4
42 TraesCS5D01G064400 chr6A 93.478 46 1 2 1293 1338 328296695 328296652 3.520000e-07 67.6
43 TraesCS5D01G064400 chr3B 100.000 31 0 0 2326 2356 741980377 741980407 2.120000e-04 58.4
44 TraesCS5D01G064400 chr2D 100.000 31 0 0 1338 1368 270476987 270477017 2.120000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G064400 chr5D 59826269 59831720 5451 True 10069.000000 10069 100.000000 1 5452 1 chr5D.!!$R2 5451
1 TraesCS5D01G064400 chr5B 70907975 70914759 6784 False 969.000000 3629 88.345429 3 5452 7 chr5B.!!$F2 5449
2 TraesCS5D01G064400 chr5A 48170001 48176219 6218 True 828.428571 1893 86.751143 3 5452 7 chr5A.!!$R3 5449

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
407 411 0.106619 ATACTCCCCGCGTCTTCTCT 60.107 55.0 4.92 0.00 0.00 3.10 F
1484 1563 0.325860 TGGTGAGGCCCGGTAGTAAT 60.326 55.0 0.00 0.00 36.04 1.89 F
1938 2045 0.461339 AGCTACCAACATTACCGCGG 60.461 55.0 26.86 26.86 0.00 6.46 F
2196 2304 0.899720 TCCTTAGGCCCTGTACAACG 59.100 55.0 0.00 0.00 0.00 4.10 F
4089 5289 0.034089 AACACTATTGCAGGGGAGGC 60.034 55.0 0.00 0.00 28.64 4.70 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1789 1894 1.757682 GTGGACACACACCCAAAAGA 58.242 50.000 0.00 0.0 46.90 2.52 R
3004 3391 0.326048 AGGGAGTGGACTGATCTGGG 60.326 60.000 4.49 0.0 0.00 4.45 R
3699 4125 0.108396 TGCTGCTGCTCACCAGTTAA 59.892 50.000 17.00 0.0 43.71 2.01 R
4191 5407 0.108472 GGGTGGCTCGGTACAACTAC 60.108 60.000 0.00 0.0 0.00 2.73 R
5081 6436 1.004277 CCTCGGTTTCATCCAGGGAAA 59.996 52.381 0.00 0.0 32.18 3.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
114 117 8.929827 TTGAAGGCATAACATGATAACAATTG 57.070 30.769 3.24 3.24 0.00 2.32
226 229 1.207089 CACTAATCTCACCGCCCTGAA 59.793 52.381 0.00 0.00 0.00 3.02
284 288 0.963225 TCCTGACGGACGAACATGAA 59.037 50.000 0.00 0.00 33.30 2.57
299 303 0.984230 ATGAAGAGGAACGAAGCCCA 59.016 50.000 0.00 0.00 0.00 5.36
323 327 7.307930 CCAAAAGGGTGATTATTTTGCAACTTC 60.308 37.037 0.00 0.00 40.77 3.01
360 364 1.274416 ACCCCCTAGATTTGCTCCAGA 60.274 52.381 0.00 0.00 0.00 3.86
374 378 2.105128 CAGACTTAGGGCGAGCGG 59.895 66.667 0.00 0.00 0.00 5.52
407 411 0.106619 ATACTCCCCGCGTCTTCTCT 60.107 55.000 4.92 0.00 0.00 3.10
434 438 4.437390 CCCAACAACGATATCTTTGTGCTC 60.437 45.833 23.65 0.00 38.18 4.26
436 440 5.446473 CCAACAACGATATCTTTGTGCTCTC 60.446 44.000 23.65 0.00 38.18 3.20
451 455 2.102357 CTCGCATACGGTCGTGCT 59.898 61.111 14.05 0.00 39.16 4.40
476 480 2.436646 CCGCGGTTCTTGGCATCT 60.437 61.111 19.50 0.00 0.00 2.90
489 493 1.911357 TGGCATCTGTCCATTGACTCT 59.089 47.619 0.00 0.00 42.28 3.24
490 494 2.286872 GGCATCTGTCCATTGACTCTG 58.713 52.381 0.00 0.00 42.28 3.35
499 503 3.565482 GTCCATTGACTCTGTTTTGCTCA 59.435 43.478 0.00 0.00 38.53 4.26
500 504 4.217118 GTCCATTGACTCTGTTTTGCTCAT 59.783 41.667 0.00 0.00 38.53 2.90
503 507 5.048224 CCATTGACTCTGTTTTGCTCATCTT 60.048 40.000 0.00 0.00 0.00 2.40
504 508 6.444633 CATTGACTCTGTTTTGCTCATCTTT 58.555 36.000 0.00 0.00 0.00 2.52
505 509 5.428496 TGACTCTGTTTTGCTCATCTTTG 57.572 39.130 0.00 0.00 0.00 2.77
509 513 3.054878 CTGTTTTGCTCATCTTTGGCAC 58.945 45.455 0.00 0.00 35.62 5.01
524 528 2.668632 CACCCGTGCCATGGTACT 59.331 61.111 27.51 9.24 32.32 2.73
534 538 2.330216 GCCATGGTACTGGAGATAGGT 58.670 52.381 14.67 0.00 38.69 3.08
553 557 2.735134 GGTGACGGAGAACATGTTACAC 59.265 50.000 11.95 13.52 0.00 2.90
556 560 4.150098 GTGACGGAGAACATGTTACACTTC 59.850 45.833 11.95 8.02 0.00 3.01
567 571 4.151258 TGTTACACTTCCTACTCGTTCG 57.849 45.455 0.00 0.00 0.00 3.95
568 572 3.058016 TGTTACACTTCCTACTCGTTCGG 60.058 47.826 0.00 0.00 0.00 4.30
569 573 1.613836 ACACTTCCTACTCGTTCGGT 58.386 50.000 0.00 0.00 0.00 4.69
575 579 3.498927 TCCTACTCGTTCGGTCAATTC 57.501 47.619 0.00 0.00 0.00 2.17
637 682 5.152623 TGCCTTAGCACCACTATCATATC 57.847 43.478 0.00 0.00 46.52 1.63
664 709 5.105187 TGGACAACATCACCAAATGACAAAA 60.105 36.000 0.00 0.00 41.24 2.44
698 745 4.043037 GCTATTTGGCGTACACTCTAGT 57.957 45.455 0.00 0.00 0.00 2.57
851 898 2.560119 CCATCCTCTCCTCGCCTCG 61.560 68.421 0.00 0.00 0.00 4.63
852 899 2.909965 ATCCTCTCCTCGCCTCGC 60.910 66.667 0.00 0.00 0.00 5.03
855 902 3.591835 CTCTCCTCGCCTCGCCTC 61.592 72.222 0.00 0.00 0.00 4.70
876 923 4.601794 TGCAGCTGTGGGGTTGGG 62.602 66.667 16.64 0.00 0.00 4.12
894 941 1.291335 GGGTTCTCTTCTCCCTCCCTA 59.709 57.143 0.00 0.00 38.29 3.53
896 943 2.390696 GTTCTCTTCTCCCTCCCTACC 58.609 57.143 0.00 0.00 0.00 3.18
897 944 0.935194 TCTCTTCTCCCTCCCTACCC 59.065 60.000 0.00 0.00 0.00 3.69
949 1014 3.282135 TCCAAAAATCCCCAATCCCAA 57.718 42.857 0.00 0.00 0.00 4.12
950 1015 3.602608 TCCAAAAATCCCCAATCCCAAA 58.397 40.909 0.00 0.00 0.00 3.28
951 1016 3.329225 TCCAAAAATCCCCAATCCCAAAC 59.671 43.478 0.00 0.00 0.00 2.93
952 1017 3.561097 CCAAAAATCCCCAATCCCAAACC 60.561 47.826 0.00 0.00 0.00 3.27
983 1048 3.181967 GCACTGTAGCAGACGCGG 61.182 66.667 12.47 0.00 45.49 6.46
984 1049 3.181967 CACTGTAGCAGACGCGGC 61.182 66.667 12.47 7.86 45.49 6.53
985 1050 3.680786 ACTGTAGCAGACGCGGCA 61.681 61.111 17.71 0.00 45.49 5.69
986 1051 2.882777 CTGTAGCAGACGCGGCAG 60.883 66.667 17.71 7.66 45.49 4.85
1369 1444 4.278919 GGAGGGAGTAGTTCTTAGGATTCG 59.721 50.000 0.00 0.00 0.00 3.34
1375 1450 3.528597 AGTTCTTAGGATTCGCCAGTC 57.471 47.619 0.00 0.00 40.02 3.51
1408 1483 4.405116 TTTTGATCTTTGCCTGCTGTTT 57.595 36.364 0.00 0.00 0.00 2.83
1443 1518 9.965902 ATTCAGAATACTTGTTGGAGTAGAAAT 57.034 29.630 0.00 0.00 35.72 2.17
1475 1554 1.396653 CATGATTCTTGGTGAGGCCC 58.603 55.000 0.00 0.00 36.04 5.80
1479 1558 0.912487 ATTCTTGGTGAGGCCCGGTA 60.912 55.000 0.00 0.00 36.04 4.02
1480 1559 1.550130 TTCTTGGTGAGGCCCGGTAG 61.550 60.000 0.00 0.00 36.04 3.18
1481 1560 2.203877 TTGGTGAGGCCCGGTAGT 60.204 61.111 0.00 0.00 36.04 2.73
1482 1561 0.974010 CTTGGTGAGGCCCGGTAGTA 60.974 60.000 0.00 0.00 36.04 1.82
1484 1563 0.325860 TGGTGAGGCCCGGTAGTAAT 60.326 55.000 0.00 0.00 36.04 1.89
1485 1564 0.835276 GGTGAGGCCCGGTAGTAATT 59.165 55.000 0.00 0.00 0.00 1.40
1486 1565 1.211212 GGTGAGGCCCGGTAGTAATTT 59.789 52.381 0.00 0.00 0.00 1.82
1488 1567 3.349927 GTGAGGCCCGGTAGTAATTTTT 58.650 45.455 0.00 0.00 0.00 1.94
1538 1638 2.948979 TCAGCCGAACAAGTCAACATTT 59.051 40.909 0.00 0.00 0.00 2.32
1539 1639 4.130857 TCAGCCGAACAAGTCAACATTTA 58.869 39.130 0.00 0.00 0.00 1.40
1540 1640 4.759693 TCAGCCGAACAAGTCAACATTTAT 59.240 37.500 0.00 0.00 0.00 1.40
1542 1642 4.759693 AGCCGAACAAGTCAACATTTATGA 59.240 37.500 0.00 0.00 0.00 2.15
1543 1643 5.240623 AGCCGAACAAGTCAACATTTATGAA 59.759 36.000 0.00 0.00 0.00 2.57
1544 1644 5.918011 GCCGAACAAGTCAACATTTATGAAA 59.082 36.000 0.00 0.00 0.00 2.69
1545 1645 6.586082 GCCGAACAAGTCAACATTTATGAAAT 59.414 34.615 0.00 0.00 0.00 2.17
1546 1646 7.201350 GCCGAACAAGTCAACATTTATGAAATC 60.201 37.037 0.00 0.00 0.00 2.17
1547 1647 7.007367 CCGAACAAGTCAACATTTATGAAATCG 59.993 37.037 0.00 0.00 0.00 3.34
1548 1648 7.533900 CGAACAAGTCAACATTTATGAAATCGT 59.466 33.333 0.00 0.00 0.00 3.73
1549 1649 9.180678 GAACAAGTCAACATTTATGAAATCGTT 57.819 29.630 0.00 0.00 0.00 3.85
1551 1651 9.825972 ACAAGTCAACATTTATGAAATCGTTAG 57.174 29.630 0.00 0.00 0.00 2.34
1552 1652 9.277565 CAAGTCAACATTTATGAAATCGTTAGG 57.722 33.333 0.00 0.00 0.00 2.69
1553 1653 8.561738 AGTCAACATTTATGAAATCGTTAGGT 57.438 30.769 0.00 0.00 0.00 3.08
1554 1654 8.665685 AGTCAACATTTATGAAATCGTTAGGTC 58.334 33.333 0.00 0.00 0.00 3.85
1555 1655 8.447833 GTCAACATTTATGAAATCGTTAGGTCA 58.552 33.333 0.00 0.00 0.00 4.02
1556 1656 8.447833 TCAACATTTATGAAATCGTTAGGTCAC 58.552 33.333 0.00 0.00 0.00 3.67
1557 1657 8.450964 CAACATTTATGAAATCGTTAGGTCACT 58.549 33.333 0.00 0.00 0.00 3.41
1558 1658 8.197988 ACATTTATGAAATCGTTAGGTCACTC 57.802 34.615 0.00 0.00 0.00 3.51
1559 1659 7.822334 ACATTTATGAAATCGTTAGGTCACTCA 59.178 33.333 0.00 0.00 0.00 3.41
1560 1660 7.591006 TTTATGAAATCGTTAGGTCACTCAC 57.409 36.000 0.00 0.00 0.00 3.51
1561 1661 4.866508 TGAAATCGTTAGGTCACTCACT 57.133 40.909 0.00 0.00 0.00 3.41
1562 1662 5.970317 TGAAATCGTTAGGTCACTCACTA 57.030 39.130 0.00 0.00 0.00 2.74
1563 1663 5.706916 TGAAATCGTTAGGTCACTCACTAC 58.293 41.667 0.00 0.00 0.00 2.73
1581 1681 6.479006 TCACTACTCACTAGCTTACAAGGTA 58.521 40.000 0.00 1.32 37.92 3.08
1596 1696 7.469456 GCTTACAAGGTAGTTGGAAAATGTTCA 60.469 37.037 0.00 0.00 38.60 3.18
1603 1703 8.704668 AGGTAGTTGGAAAATGTTCATTTCTTT 58.295 29.630 10.55 0.00 37.06 2.52
1650 1755 7.102518 TCATGGCCCCATTAGAATAATAAGT 57.897 36.000 0.00 0.00 33.90 2.24
1702 1807 1.139734 CACCTCACGCGATGCTAGT 59.860 57.895 15.93 0.00 0.00 2.57
1743 1848 6.637254 GGAGGATTCGTTTTTCTTTCTTTGTC 59.363 38.462 0.00 0.00 0.00 3.18
1748 1853 5.040635 TCGTTTTTCTTTCTTTGTCATGCC 58.959 37.500 0.00 0.00 0.00 4.40
1777 1882 4.108501 GGTAAAGACCCCCAAAAGAGAA 57.891 45.455 0.00 0.00 40.23 2.87
1786 1891 4.293368 ACCCCCAAAAGAGAAGAGAATCAT 59.707 41.667 0.00 0.00 37.82 2.45
1789 1894 6.212187 CCCCCAAAAGAGAAGAGAATCATTTT 59.788 38.462 0.00 0.00 37.82 1.82
1790 1895 7.318893 CCCCAAAAGAGAAGAGAATCATTTTC 58.681 38.462 0.00 0.00 37.82 2.29
1797 1902 8.120140 AGAGAAGAGAATCATTTTCTTTTGGG 57.880 34.615 4.72 0.00 37.82 4.12
1938 2045 0.461339 AGCTACCAACATTACCGCGG 60.461 55.000 26.86 26.86 0.00 6.46
1966 2073 5.429762 TCATACCATTCAGGAATCAGGAACT 59.570 40.000 5.64 0.00 41.22 3.01
2012 2120 8.603242 ATTTATTCCGAGTATTATCCACACAC 57.397 34.615 0.00 0.00 0.00 3.82
2094 2202 5.746284 CCACTCTCTATCGGGTCTGATATA 58.254 45.833 0.51 0.00 30.79 0.86
2102 2210 9.929180 CTCTATCGGGTCTGATATAATTTGAAA 57.071 33.333 0.51 0.00 30.79 2.69
2156 2264 1.003580 ACCGCTCTGGAAACATCATGT 59.996 47.619 0.00 0.00 42.00 3.21
2157 2265 1.399440 CCGCTCTGGAAACATCATGTG 59.601 52.381 0.00 0.00 42.00 3.21
2189 2297 2.043227 CTAGTTCCTCCTTAGGCCCTG 58.957 57.143 0.00 0.00 43.31 4.45
2196 2304 0.899720 TCCTTAGGCCCTGTACAACG 59.100 55.000 0.00 0.00 0.00 4.10
2315 2424 5.460646 CACTGATGCCTAACAAAAATTCGT 58.539 37.500 0.00 0.00 0.00 3.85
2452 2716 7.508977 ACTTTTGAGATTCAGGACCCATTTTTA 59.491 33.333 0.00 0.00 0.00 1.52
2459 2723 4.662278 TCAGGACCCATTTTTAACCTGAG 58.338 43.478 0.00 0.00 45.53 3.35
2472 2736 1.059098 ACCTGAGATGTGGTTGCTGA 58.941 50.000 0.00 0.00 31.62 4.26
2480 2744 2.363306 TGTGGTTGCTGAATTCAGGT 57.637 45.000 31.41 0.00 43.94 4.00
2497 2761 3.455910 TCAGGTATCCAGGTGATTTCCAG 59.544 47.826 0.00 0.00 34.76 3.86
2536 2802 9.979578 CTGCAGACTATTCTCTGTAATCTATTT 57.020 33.333 8.42 0.00 40.03 1.40
2561 2827 7.479980 TGTGAAATATGCAGTTATTGTTAGGC 58.520 34.615 0.00 0.00 0.00 3.93
2566 2832 2.752354 TGCAGTTATTGTTAGGCGCAAT 59.248 40.909 10.83 1.89 39.55 3.56
2602 2868 6.268387 ACATTGGAACAGACCTGAATTCATTT 59.732 34.615 8.96 0.00 42.39 2.32
2691 2970 7.707624 ATGTAATTGAGCAATTCTTCTTCCA 57.292 32.000 11.38 1.17 40.99 3.53
2699 2978 6.660521 TGAGCAATTCTTCTTCCACATGTATT 59.339 34.615 0.00 0.00 0.00 1.89
2801 3187 7.113404 GGTGCAAACATTATAATTACAGCATCG 59.887 37.037 12.68 0.00 0.00 3.84
2831 3217 6.708054 AGGTTCTGAAATACAGTTTCACTCTG 59.292 38.462 0.00 0.00 45.86 3.35
2868 3255 7.534085 TTCCGTGACATTTATGAACATACTC 57.466 36.000 0.00 0.00 0.00 2.59
2869 3256 6.873997 TCCGTGACATTTATGAACATACTCT 58.126 36.000 0.00 0.00 0.00 3.24
3004 3391 4.531332 GTGAGATGTTTCTGAAGCAACAC 58.469 43.478 10.95 15.44 34.31 3.32
3013 3400 2.082231 CTGAAGCAACACCCAGATCAG 58.918 52.381 0.00 0.00 0.00 2.90
3085 3472 2.569059 GCTTATCTTGCTGATGGCTCA 58.431 47.619 3.60 0.00 42.39 4.26
3164 3551 3.528597 AGTCACTTCTCTTTATCCGGC 57.471 47.619 0.00 0.00 0.00 6.13
3183 3570 3.323979 CGGCTGTTACTAGTGGGGATTAT 59.676 47.826 5.39 0.00 0.00 1.28
3195 3582 1.494721 GGGGATTATGGTGAAGCTGGA 59.505 52.381 0.00 0.00 0.00 3.86
3267 3654 3.063180 CAGAAGCACGTCCTGATTTGATC 59.937 47.826 0.00 0.00 0.00 2.92
3330 3717 3.181526 GCTGAACTTTACTGATCGCACAG 60.182 47.826 7.04 7.04 42.78 3.66
3390 3777 8.757982 ATGAAATAGTATCTGATGGTTTGCTT 57.242 30.769 0.00 0.00 0.00 3.91
3617 4004 4.094476 ACTCTCCATTCGGAAGGTAAGAA 58.906 43.478 1.44 0.00 42.21 2.52
3621 4008 5.659525 TCTCCATTCGGAAGGTAAGAACATA 59.340 40.000 1.44 0.00 42.21 2.29
3657 4044 9.724839 TTAGTTGTAAGTAAACAAATGCAAGTC 57.275 29.630 0.00 0.00 40.85 3.01
3674 4100 2.262292 CAGGCGCCCATGTTTTGG 59.738 61.111 26.15 0.00 46.00 3.28
3677 4103 1.667510 GGCGCCCATGTTTTGGTTG 60.668 57.895 18.11 0.00 44.83 3.77
3678 4104 2.316867 GCGCCCATGTTTTGGTTGC 61.317 57.895 0.00 0.00 44.83 4.17
3686 4112 4.451774 CCCATGTTTTGGTTGCACAAATAG 59.548 41.667 3.59 0.00 44.83 1.73
3696 4122 5.583061 TGGTTGCACAAATAGTATCTTACCG 59.417 40.000 0.00 0.00 0.00 4.02
3699 4125 5.726397 TGCACAAATAGTATCTTACCGTGT 58.274 37.500 0.00 0.00 0.00 4.49
3706 4132 8.814235 CAAATAGTATCTTACCGTGTTAACTGG 58.186 37.037 13.77 13.77 0.00 4.00
3737 4164 5.748152 GCAGCAATGTTCTTTGTTTGACTAA 59.252 36.000 0.00 0.00 0.00 2.24
3752 4179 1.792949 GACTAACTGTGTTGTGCTCCG 59.207 52.381 0.00 0.00 0.00 4.63
3755 4182 2.319136 AACTGTGTTGTGCTCCGTTA 57.681 45.000 0.00 0.00 0.00 3.18
3757 4184 1.138266 ACTGTGTTGTGCTCCGTTACT 59.862 47.619 0.00 0.00 0.00 2.24
3758 4185 1.526887 CTGTGTTGTGCTCCGTTACTG 59.473 52.381 0.00 0.00 0.00 2.74
3815 4242 3.126831 CAGTGGAGAAAGATACGATGCC 58.873 50.000 0.00 0.00 0.00 4.40
3820 4247 3.560503 GAGAAAGATACGATGCCGAGAG 58.439 50.000 0.00 0.00 39.50 3.20
3850 4277 7.365295 GGAGTGGGTGGTAAGTTTATCTCAATA 60.365 40.741 0.00 0.00 0.00 1.90
3853 4280 7.065443 GTGGGTGGTAAGTTTATCTCAATACAC 59.935 40.741 0.00 0.00 0.00 2.90
3855 4282 7.280205 GGGTGGTAAGTTTATCTCAATACACTG 59.720 40.741 0.00 0.00 30.55 3.66
3857 4284 9.601217 GTGGTAAGTTTATCTCAATACACTGAT 57.399 33.333 0.00 0.00 30.55 2.90
3858 4285 9.599866 TGGTAAGTTTATCTCAATACACTGATG 57.400 33.333 0.00 0.00 30.55 3.07
3900 4328 9.586435 AACCTCTTATTTTTCTGAACACAAAAG 57.414 29.630 0.00 0.00 0.00 2.27
3904 4332 8.966868 TCTTATTTTTCTGAACACAAAAGACCT 58.033 29.630 0.00 0.00 0.00 3.85
3905 4333 8.925161 TTATTTTTCTGAACACAAAAGACCTG 57.075 30.769 0.00 0.00 0.00 4.00
3906 4334 4.370364 TTTCTGAACACAAAAGACCTGC 57.630 40.909 0.00 0.00 0.00 4.85
3931 4359 8.957466 GCCAATCAAATACCTAACTCTAGTTTT 58.043 33.333 0.00 0.00 39.31 2.43
3952 4380 9.232473 AGTTTTTAACCTAGAATTCTAGCTTGG 57.768 33.333 29.70 21.73 43.47 3.61
3953 4381 9.011095 GTTTTTAACCTAGAATTCTAGCTTGGT 57.989 33.333 29.70 22.28 43.47 3.67
3954 4382 9.582648 TTTTTAACCTAGAATTCTAGCTTGGTT 57.417 29.630 29.70 28.22 46.66 3.67
3973 4401 9.489084 GCTTGGTTATCTATTCCTTTTGTTTTT 57.511 29.630 0.00 0.00 0.00 1.94
3988 4416 8.177013 CCTTTTGTTTTTCATTTTTCCACTCAG 58.823 33.333 0.00 0.00 0.00 3.35
3991 4419 3.641437 TTTCATTTTTCCACTCAGCCG 57.359 42.857 0.00 0.00 0.00 5.52
4016 4444 9.325150 CGTAGGTCAAACTGTAAAATGTAAATG 57.675 33.333 0.00 0.00 0.00 2.32
4052 5252 5.316167 TCCATAGCGATTGGATATTTGCTT 58.684 37.500 1.71 0.00 38.35 3.91
4053 5253 5.412594 TCCATAGCGATTGGATATTTGCTTC 59.587 40.000 1.71 0.00 38.35 3.86
4057 5257 3.256631 GCGATTGGATATTTGCTTCCCAT 59.743 43.478 0.00 0.00 0.00 4.00
4060 5260 5.124457 CGATTGGATATTTGCTTCCCATAGG 59.876 44.000 0.00 0.00 0.00 2.57
4073 5273 2.647299 TCCCATAGGGCAAGAAAGAACA 59.353 45.455 0.00 0.00 43.94 3.18
4074 5274 2.755103 CCCATAGGGCAAGAAAGAACAC 59.245 50.000 0.00 0.00 35.35 3.32
4077 5277 5.440610 CCATAGGGCAAGAAAGAACACTAT 58.559 41.667 0.00 0.00 0.00 2.12
4079 5279 6.183360 CCATAGGGCAAGAAAGAACACTATTG 60.183 42.308 0.00 0.00 0.00 1.90
4081 5281 3.255642 GGGCAAGAAAGAACACTATTGCA 59.744 43.478 9.60 0.00 43.61 4.08
4082 5282 4.479619 GGCAAGAAAGAACACTATTGCAG 58.520 43.478 9.60 0.00 43.61 4.41
4085 5285 3.690460 AGAAAGAACACTATTGCAGGGG 58.310 45.455 0.00 0.00 28.64 4.79
4086 5286 3.330701 AGAAAGAACACTATTGCAGGGGA 59.669 43.478 0.00 0.00 28.64 4.81
4087 5287 3.356529 AAGAACACTATTGCAGGGGAG 57.643 47.619 0.00 0.00 28.64 4.30
4089 5289 0.034089 AACACTATTGCAGGGGAGGC 60.034 55.000 0.00 0.00 28.64 4.70
4090 5290 1.207488 ACACTATTGCAGGGGAGGCA 61.207 55.000 0.00 0.00 40.00 4.75
4092 5292 1.421268 CACTATTGCAGGGGAGGCATA 59.579 52.381 0.00 0.00 41.58 3.14
4093 5293 2.135189 ACTATTGCAGGGGAGGCATAA 58.865 47.619 0.00 0.00 41.58 1.90
4094 5294 2.513738 ACTATTGCAGGGGAGGCATAAA 59.486 45.455 0.00 0.00 41.58 1.40
4095 5295 1.780503 ATTGCAGGGGAGGCATAAAC 58.219 50.000 0.00 0.00 41.58 2.01
4096 5296 0.704076 TTGCAGGGGAGGCATAAACT 59.296 50.000 0.00 0.00 41.58 2.66
4098 5298 2.135189 TGCAGGGGAGGCATAAACTAT 58.865 47.619 0.00 0.00 36.11 2.12
4099 5299 3.322862 TGCAGGGGAGGCATAAACTATA 58.677 45.455 0.00 0.00 36.11 1.31
4101 5301 3.307762 GCAGGGGAGGCATAAACTATAGG 60.308 52.174 4.43 0.00 0.00 2.57
4102 5302 4.168101 CAGGGGAGGCATAAACTATAGGA 58.832 47.826 4.43 0.00 0.00 2.94
4104 5304 5.073144 CAGGGGAGGCATAAACTATAGGAAA 59.927 44.000 4.43 0.00 0.00 3.13
4137 5353 6.296026 ACCTTATTTGAGTTACTCTGTTGCA 58.704 36.000 13.86 0.00 0.00 4.08
4143 5359 5.411831 TGAGTTACTCTGTTGCATCTGAT 57.588 39.130 13.86 0.00 0.00 2.90
4151 5367 7.692460 ACTCTGTTGCATCTGATTTATTTCA 57.308 32.000 4.99 0.00 0.00 2.69
4152 5368 8.114331 ACTCTGTTGCATCTGATTTATTTCAA 57.886 30.769 4.99 0.00 0.00 2.69
4161 5377 6.140303 TCTGATTTATTTCAAGCAGCCATC 57.860 37.500 0.00 0.00 39.56 3.51
4168 5384 1.210538 TCAAGCAGCCATCCTCATCT 58.789 50.000 0.00 0.00 0.00 2.90
4186 5402 1.705186 TCTTCCCTTTGGTTAGCAGCT 59.295 47.619 0.00 0.00 0.00 4.24
4191 5407 4.079253 TCCCTTTGGTTAGCAGCTAAAAG 58.921 43.478 16.74 15.43 0.00 2.27
4193 5409 5.007682 CCCTTTGGTTAGCAGCTAAAAGTA 58.992 41.667 16.74 2.79 0.00 2.24
4194 5410 5.123979 CCCTTTGGTTAGCAGCTAAAAGTAG 59.876 44.000 16.74 11.35 0.00 2.57
4196 5412 6.206829 CCTTTGGTTAGCAGCTAAAAGTAGTT 59.793 38.462 16.74 0.00 0.00 2.24
4197 5413 6.554334 TTGGTTAGCAGCTAAAAGTAGTTG 57.446 37.500 16.74 0.00 40.52 3.16
4198 5414 5.617252 TGGTTAGCAGCTAAAAGTAGTTGT 58.383 37.500 16.74 0.00 39.91 3.32
4199 5415 6.761312 TGGTTAGCAGCTAAAAGTAGTTGTA 58.239 36.000 16.74 0.00 39.91 2.41
4200 5416 6.647895 TGGTTAGCAGCTAAAAGTAGTTGTAC 59.352 38.462 16.74 0.39 39.91 2.90
4201 5417 6.091849 GGTTAGCAGCTAAAAGTAGTTGTACC 59.908 42.308 16.74 6.14 39.91 3.34
4202 5418 4.243270 AGCAGCTAAAAGTAGTTGTACCG 58.757 43.478 0.00 0.00 39.91 4.02
4203 5419 4.021719 AGCAGCTAAAAGTAGTTGTACCGA 60.022 41.667 0.00 0.00 39.91 4.69
4210 5426 0.108472 GTAGTTGTACCGAGCCACCC 60.108 60.000 0.00 0.00 0.00 4.61
4215 5431 0.040058 TGTACCGAGCCACCCTCTAA 59.960 55.000 0.00 0.00 38.49 2.10
4216 5432 0.745468 GTACCGAGCCACCCTCTAAG 59.255 60.000 0.00 0.00 38.49 2.18
4217 5433 1.041447 TACCGAGCCACCCTCTAAGC 61.041 60.000 0.00 0.00 38.49 3.09
4218 5434 2.501610 CGAGCCACCCTCTAAGCC 59.498 66.667 0.00 0.00 38.49 4.35
4219 5435 2.060980 CGAGCCACCCTCTAAGCCT 61.061 63.158 0.00 0.00 38.49 4.58
4235 5451 7.672239 CCTCTAAGCCTCTGTCCTACTAATAAT 59.328 40.741 0.00 0.00 0.00 1.28
4319 5535 2.026822 GGAATCCACTGGTGTGTCAGAT 60.027 50.000 0.00 0.00 42.34 2.90
4341 5557 6.537301 AGATGGCGATTTCGTTTCTTATGTAA 59.463 34.615 1.55 0.00 42.22 2.41
4415 5631 1.624813 CCAAACACCATCAGGGCAATT 59.375 47.619 0.00 0.00 42.05 2.32
4417 5633 3.119029 CCAAACACCATCAGGGCAATTAG 60.119 47.826 0.00 0.00 42.05 1.73
4424 5640 4.910304 ACCATCAGGGCAATTAGTAGATCT 59.090 41.667 0.00 0.00 42.05 2.75
4433 5649 6.931840 GGGCAATTAGTAGATCTCTTAACCAG 59.068 42.308 0.00 0.00 0.00 4.00
4442 5658 6.344232 AGATCTCTTAACCAGTACTACCCT 57.656 41.667 0.00 0.00 0.00 4.34
4446 5662 0.819582 TAACCAGTACTACCCTGCGC 59.180 55.000 0.00 0.00 0.00 6.09
4448 5664 2.058595 CCAGTACTACCCTGCGCCT 61.059 63.158 4.18 0.00 0.00 5.52
4452 5668 0.388294 GTACTACCCTGCGCCTTAGG 59.612 60.000 4.18 4.84 35.01 2.69
4453 5669 0.032813 TACTACCCTGCGCCTTAGGT 60.033 55.000 4.18 9.04 36.36 3.08
4454 5670 0.032813 ACTACCCTGCGCCTTAGGTA 60.033 55.000 4.18 9.76 33.70 3.08
4456 5672 1.692519 CTACCCTGCGCCTTAGGTATT 59.307 52.381 4.18 0.00 34.45 1.89
4458 5674 1.308998 CCCTGCGCCTTAGGTATTTG 58.691 55.000 4.18 0.00 33.31 2.32
4459 5675 0.663153 CCTGCGCCTTAGGTATTTGC 59.337 55.000 4.18 0.00 0.00 3.68
4461 5677 1.092921 TGCGCCTTAGGTATTTGCGG 61.093 55.000 4.18 0.00 44.96 5.69
4462 5678 1.647084 CGCCTTAGGTATTTGCGGC 59.353 57.895 0.00 0.00 41.42 6.53
4463 5679 1.092921 CGCCTTAGGTATTTGCGGCA 61.093 55.000 0.00 0.00 41.42 5.69
4464 5680 0.380733 GCCTTAGGTATTTGCGGCAC 59.619 55.000 0.05 0.00 37.48 5.01
4465 5681 1.745232 CCTTAGGTATTTGCGGCACA 58.255 50.000 0.05 0.00 0.00 4.57
4466 5682 1.670811 CCTTAGGTATTTGCGGCACAG 59.329 52.381 0.05 0.00 0.00 3.66
4467 5683 2.627945 CTTAGGTATTTGCGGCACAGA 58.372 47.619 0.05 0.00 0.00 3.41
4468 5684 2.309528 TAGGTATTTGCGGCACAGAG 57.690 50.000 0.05 0.00 0.00 3.35
4469 5685 0.324943 AGGTATTTGCGGCACAGAGT 59.675 50.000 0.05 0.00 0.00 3.24
4470 5686 1.165270 GGTATTTGCGGCACAGAGTT 58.835 50.000 0.05 0.00 0.00 3.01
4471 5687 1.135689 GGTATTTGCGGCACAGAGTTG 60.136 52.381 0.05 0.00 0.00 3.16
4472 5688 1.535462 GTATTTGCGGCACAGAGTTGT 59.465 47.619 0.05 0.00 38.31 3.32
4473 5689 1.890876 ATTTGCGGCACAGAGTTGTA 58.109 45.000 0.05 0.00 35.25 2.41
4474 5690 0.941542 TTTGCGGCACAGAGTTGTAC 59.058 50.000 0.05 0.00 35.25 2.90
4475 5691 0.882927 TTGCGGCACAGAGTTGTACC 60.883 55.000 0.05 0.00 37.38 3.34
4486 5702 3.772025 CAGAGTTGTACCCTCCTTCAGAT 59.228 47.826 6.14 0.00 0.00 2.90
4489 5705 1.879575 TGTACCCTCCTTCAGATGGG 58.120 55.000 2.51 0.00 44.89 4.00
4506 5722 2.980548 TGGGTTACTCCTGGTGTTACT 58.019 47.619 15.11 0.00 36.25 2.24
4509 5725 4.906664 TGGGTTACTCCTGGTGTTACTTTA 59.093 41.667 15.11 3.04 36.25 1.85
4521 5737 5.708230 TGGTGTTACTTTATCAACATGTCCC 59.292 40.000 0.00 0.00 37.04 4.46
4522 5738 5.944007 GGTGTTACTTTATCAACATGTCCCT 59.056 40.000 0.00 0.00 37.04 4.20
4532 5748 4.517285 TCAACATGTCCCTGAGATTTAGC 58.483 43.478 0.00 0.00 0.00 3.09
4552 5768 4.270178 GCAATAGCTGTGTGATGTTCTC 57.730 45.455 0.00 0.00 37.91 2.87
4553 5769 3.064545 GCAATAGCTGTGTGATGTTCTCC 59.935 47.826 0.00 0.00 37.91 3.71
4554 5770 4.511527 CAATAGCTGTGTGATGTTCTCCT 58.488 43.478 0.00 0.00 0.00 3.69
4555 5771 2.469274 AGCTGTGTGATGTTCTCCTG 57.531 50.000 0.00 0.00 0.00 3.86
4568 5784 6.541278 TGATGTTCTCCTGCAAAATGAGATAG 59.459 38.462 5.93 0.00 35.24 2.08
4583 5799 4.436332 TGAGATAGCTGTGCACTTACATG 58.564 43.478 19.41 0.00 0.00 3.21
4594 5810 2.518949 CACTTACATGTGCGAAATGGC 58.481 47.619 9.11 0.00 0.00 4.40
4600 5816 2.126888 GTGCGAAATGGCGGTGTG 60.127 61.111 0.00 0.00 35.06 3.82
4606 5822 1.801771 CGAAATGGCGGTGTGTTTCTA 59.198 47.619 0.00 0.00 0.00 2.10
4607 5823 2.159707 CGAAATGGCGGTGTGTTTCTAG 60.160 50.000 0.00 0.00 0.00 2.43
4608 5824 1.165270 AATGGCGGTGTGTTTCTAGC 58.835 50.000 0.00 0.00 0.00 3.42
4609 5825 0.036164 ATGGCGGTGTGTTTCTAGCA 59.964 50.000 0.00 0.00 0.00 3.49
4611 5827 0.948678 GGCGGTGTGTTTCTAGCAAA 59.051 50.000 0.00 0.00 0.00 3.68
4612 5828 1.334689 GGCGGTGTGTTTCTAGCAAAC 60.335 52.381 9.52 9.52 0.00 2.93
4613 5829 1.332375 GCGGTGTGTTTCTAGCAAACA 59.668 47.619 13.22 13.22 37.76 2.83
4614 5830 2.602217 GCGGTGTGTTTCTAGCAAACAG 60.602 50.000 16.04 9.09 40.38 3.16
4616 5832 3.805422 CGGTGTGTTTCTAGCAAACAGTA 59.195 43.478 16.04 9.15 40.38 2.74
4618 5834 5.558273 CGGTGTGTTTCTAGCAAACAGTAAG 60.558 44.000 16.04 8.53 40.38 2.34
4619 5835 5.205565 GTGTGTTTCTAGCAAACAGTAAGC 58.794 41.667 16.04 8.46 40.38 3.09
4634 5850 5.899120 CAGTAAGCTGTACTAAGGAGTGA 57.101 43.478 7.85 0.00 37.92 3.41
4635 5851 6.458232 CAGTAAGCTGTACTAAGGAGTGAT 57.542 41.667 7.85 0.00 37.92 3.06
4636 5852 6.500041 CAGTAAGCTGTACTAAGGAGTGATC 58.500 44.000 7.85 0.00 37.92 2.92
4648 5882 1.661112 GGAGTGATCGCAAGCAGTAAC 59.339 52.381 9.33 0.00 37.18 2.50
4651 5885 1.078709 TGATCGCAAGCAGTAACAGC 58.921 50.000 0.00 0.00 37.18 4.40
4669 5903 4.175787 CAGCGAAGTTGTACTAAGGAGT 57.824 45.455 0.00 0.00 39.92 3.85
4679 5913 3.825014 TGTACTAAGGAGTGAGCGAAACT 59.175 43.478 0.00 0.00 36.28 2.66
4682 5916 5.251601 ACTAAGGAGTGAGCGAAACTATC 57.748 43.478 0.00 0.00 33.41 2.08
4740 5975 5.564550 AGAGAGTTTGAGGCAATGTATGTT 58.435 37.500 0.00 0.00 0.00 2.71
4751 5986 8.432013 TGAGGCAATGTATGTTATACAGATTCT 58.568 33.333 7.61 3.69 0.00 2.40
4766 6001 5.738909 ACAGATTCTGAGTTGTTATGGAGG 58.261 41.667 20.33 0.00 35.18 4.30
4792 6027 3.287867 ACCTGCAATAAGCTGCTATGT 57.712 42.857 0.90 0.00 45.94 2.29
4801 6036 3.631145 AAGCTGCTATGTTGTTGTGTG 57.369 42.857 0.90 0.00 0.00 3.82
4805 6145 3.058293 GCTGCTATGTTGTTGTGTGCTAA 60.058 43.478 0.00 0.00 0.00 3.09
4811 6151 2.687425 TGTTGTTGTGTGCTAATGCTGT 59.313 40.909 0.00 0.00 40.48 4.40
4815 6155 3.003585 TGTTGTGTGCTAATGCTGTCTTG 59.996 43.478 0.00 0.00 40.48 3.02
4818 6158 2.095567 GTGTGCTAATGCTGTCTTGTGG 60.096 50.000 0.00 0.00 40.48 4.17
4819 6159 1.470098 GTGCTAATGCTGTCTTGTGGG 59.530 52.381 0.00 0.00 40.48 4.61
4915 6262 4.645535 TCCTGGTTTCTTTCATCACTGAG 58.354 43.478 0.00 0.00 31.68 3.35
4928 6275 6.441093 TCATCACTGAGATACAAAATTGCC 57.559 37.500 0.00 0.00 34.43 4.52
4938 6285 7.930325 TGAGATACAAAATTGCCAACAAAATCA 59.070 29.630 0.00 0.00 39.77 2.57
4943 6290 7.942990 ACAAAATTGCCAACAAAATCATTGAT 58.057 26.923 0.00 0.00 39.77 2.57
4945 6292 9.250624 CAAAATTGCCAACAAAATCATTGATTT 57.749 25.926 17.03 17.03 43.07 2.17
4947 6294 9.819267 AAATTGCCAACAAAATCATTGATTTTT 57.181 22.222 26.99 18.16 46.07 1.94
4995 6342 8.621532 TCTCAACTATTATGCATGTATTTCCC 57.378 34.615 10.16 0.00 0.00 3.97
4996 6343 8.439971 TCTCAACTATTATGCATGTATTTCCCT 58.560 33.333 10.16 0.00 0.00 4.20
4997 6344 8.995027 TCAACTATTATGCATGTATTTCCCTT 57.005 30.769 10.16 0.00 0.00 3.95
4998 6345 9.420118 TCAACTATTATGCATGTATTTCCCTTT 57.580 29.630 10.16 0.00 0.00 3.11
4999 6346 9.467258 CAACTATTATGCATGTATTTCCCTTTG 57.533 33.333 10.16 0.00 0.00 2.77
5000 6347 8.181904 ACTATTATGCATGTATTTCCCTTTGG 57.818 34.615 10.16 0.00 0.00 3.28
5001 6348 8.004215 ACTATTATGCATGTATTTCCCTTTGGA 58.996 33.333 10.16 0.00 39.54 3.53
5021 6368 5.570320 TGGAAACAAAGAATTCTCCCTAGG 58.430 41.667 8.78 0.06 37.44 3.02
5022 6369 4.950475 GGAAACAAAGAATTCTCCCTAGGG 59.050 45.833 23.22 23.22 0.00 3.53
5023 6370 5.516768 GGAAACAAAGAATTCTCCCTAGGGT 60.517 44.000 27.58 7.75 36.47 4.34
5024 6371 5.600669 AACAAAGAATTCTCCCTAGGGTT 57.399 39.130 27.58 14.43 36.47 4.11
5025 6372 5.600669 ACAAAGAATTCTCCCTAGGGTTT 57.399 39.130 27.58 15.29 36.47 3.27
5026 6373 5.965486 ACAAAGAATTCTCCCTAGGGTTTT 58.035 37.500 27.58 15.81 36.47 2.43
5027 6374 6.010850 ACAAAGAATTCTCCCTAGGGTTTTC 58.989 40.000 27.58 22.10 36.47 2.29
5028 6375 4.864483 AGAATTCTCCCTAGGGTTTTCC 57.136 45.455 27.58 13.12 39.75 3.13
5030 6377 4.858519 AGAATTCTCCCTAGGGTTTTCCTT 59.141 41.667 27.58 13.98 45.47 3.36
5031 6378 4.864483 ATTCTCCCTAGGGTTTTCCTTC 57.136 45.455 27.58 0.00 45.47 3.46
5032 6379 3.285290 TCTCCCTAGGGTTTTCCTTCA 57.715 47.619 27.58 3.67 45.47 3.02
5033 6380 3.815507 TCTCCCTAGGGTTTTCCTTCAT 58.184 45.455 27.58 0.00 45.47 2.57
5034 6381 3.780850 TCTCCCTAGGGTTTTCCTTCATC 59.219 47.826 27.58 0.00 45.47 2.92
5035 6382 3.523564 CTCCCTAGGGTTTTCCTTCATCA 59.476 47.826 27.58 2.11 45.47 3.07
5036 6383 3.265995 TCCCTAGGGTTTTCCTTCATCAC 59.734 47.826 27.58 0.00 45.47 3.06
5037 6384 3.267031 CCCTAGGGTTTTCCTTCATCACT 59.733 47.826 20.88 0.00 45.47 3.41
5038 6385 4.265073 CCTAGGGTTTTCCTTCATCACTG 58.735 47.826 0.00 0.00 45.47 3.66
5039 6386 4.019321 CCTAGGGTTTTCCTTCATCACTGA 60.019 45.833 0.00 0.00 45.47 3.41
5040 6387 4.664688 AGGGTTTTCCTTCATCACTGAT 57.335 40.909 0.00 0.00 45.47 2.90
5041 6388 5.779241 AGGGTTTTCCTTCATCACTGATA 57.221 39.130 0.00 0.00 45.47 2.15
5042 6389 6.332976 AGGGTTTTCCTTCATCACTGATAT 57.667 37.500 0.00 0.00 45.47 1.63
5043 6390 7.451731 AGGGTTTTCCTTCATCACTGATATA 57.548 36.000 0.00 0.00 45.47 0.86
5044 6391 7.283329 AGGGTTTTCCTTCATCACTGATATAC 58.717 38.462 0.00 0.00 45.47 1.47
5045 6392 7.054124 GGGTTTTCCTTCATCACTGATATACA 58.946 38.462 0.00 0.00 40.46 2.29
5046 6393 7.556275 GGGTTTTCCTTCATCACTGATATACAA 59.444 37.037 0.00 0.00 40.46 2.41
5047 6394 8.956426 GGTTTTCCTTCATCACTGATATACAAA 58.044 33.333 0.00 0.00 36.94 2.83
5051 6398 8.593492 TCCTTCATCACTGATATACAAAATCG 57.407 34.615 0.00 0.00 0.00 3.34
5054 6401 9.642312 CTTCATCACTGATATACAAAATCGTTG 57.358 33.333 0.00 0.00 0.00 4.10
5059 6406 8.655970 TCACTGATATACAAAATCGTTGACTTG 58.344 33.333 0.00 0.00 0.00 3.16
5077 6424 6.978338 TGACTTGTTTTAGATAGTCGTGACT 58.022 36.000 7.77 7.77 45.02 3.41
5081 6436 7.709613 ACTTGTTTTAGATAGTCGTGACTTGTT 59.290 33.333 7.97 0.00 42.54 2.83
5088 6443 2.561569 AGTCGTGACTTGTTTTCCCTG 58.438 47.619 0.00 0.00 38.83 4.45
5099 6454 2.158593 TGTTTTCCCTGGATGAAACCGA 60.159 45.455 9.78 0.00 31.78 4.69
5103 6458 1.562672 CCCTGGATGAAACCGAGGGT 61.563 60.000 0.00 0.00 40.34 4.34
5111 6466 4.485163 GATGAAACCGAGGGTTGAAATTG 58.515 43.478 0.00 0.00 46.20 2.32
5165 6521 9.638176 AGATTTGACTCTTTTTATGATATGGCT 57.362 29.630 0.00 0.00 0.00 4.75
5166 6522 9.674824 GATTTGACTCTTTTTATGATATGGCTG 57.325 33.333 0.00 0.00 0.00 4.85
5170 6526 9.679661 TGACTCTTTTTATGATATGGCTGTAAA 57.320 29.630 0.00 0.00 0.00 2.01
5171 6527 9.937175 GACTCTTTTTATGATATGGCTGTAAAC 57.063 33.333 0.00 0.00 0.00 2.01
5200 6558 3.902881 AAAAACACATTTCACAGCCCA 57.097 38.095 0.00 0.00 0.00 5.36
5234 6592 3.971032 AGCTCAGTGTTGTAAAAGTGC 57.029 42.857 0.00 0.00 0.00 4.40
5239 6597 4.980590 TCAGTGTTGTAAAAGTGCAAGTG 58.019 39.130 0.00 0.00 29.18 3.16
5242 6600 6.149640 TCAGTGTTGTAAAAGTGCAAGTGTAA 59.850 34.615 0.00 0.00 29.18 2.41
5245 6603 7.024768 GTGTTGTAAAAGTGCAAGTGTAAAGA 58.975 34.615 0.00 0.00 29.18 2.52
5246 6604 7.007995 GTGTTGTAAAAGTGCAAGTGTAAAGAC 59.992 37.037 0.00 0.00 29.18 3.01
5247 6605 6.745159 TGTAAAAGTGCAAGTGTAAAGACA 57.255 33.333 0.00 0.00 0.00 3.41
5248 6606 6.781138 TGTAAAAGTGCAAGTGTAAAGACAG 58.219 36.000 0.00 0.00 35.82 3.51
5249 6607 5.897377 AAAAGTGCAAGTGTAAAGACAGT 57.103 34.783 0.00 0.00 41.21 3.55
5251 6609 6.604735 AAAGTGCAAGTGTAAAGACAGTAG 57.395 37.500 0.00 0.00 38.33 2.57
5255 7137 6.700520 AGTGCAAGTGTAAAGACAGTAGTTAC 59.299 38.462 0.00 0.61 38.33 2.50
5259 7141 7.096147 GCAAGTGTAAAGACAGTAGTTACTCAC 60.096 40.741 0.00 0.00 38.33 3.51
5274 7156 5.648092 AGTTACTCACTCCAAATGGCAATAC 59.352 40.000 0.00 0.00 34.44 1.89
5275 7157 3.356290 ACTCACTCCAAATGGCAATACC 58.644 45.455 0.00 0.00 39.84 2.73
5301 7183 9.899661 CGGGGAAGATATAATTCATGGTTAATA 57.100 33.333 0.00 0.00 0.00 0.98
5420 7316 0.926155 CGATTGCTCTGACCACATCG 59.074 55.000 0.00 0.00 0.00 3.84
5441 7337 2.887152 GCCAATGGAGATCATACCAACC 59.113 50.000 2.05 0.00 39.69 3.77
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
140 143 6.012658 TCTTCAAATTGATTCAAGGGTTCG 57.987 37.500 5.21 0.00 0.00 3.95
177 180 4.250431 GCATACGCGGCGGCAATT 62.250 61.111 27.37 7.55 39.92 2.32
207 210 1.482593 CTTCAGGGCGGTGAGATTAGT 59.517 52.381 0.00 0.00 0.00 2.24
226 229 0.749649 CGTAGATTCCTGCCAGCTCT 59.250 55.000 0.00 0.00 0.00 4.09
284 288 1.545651 CCTTTTGGGCTTCGTTCCTCT 60.546 52.381 0.00 0.00 35.46 3.69
299 303 6.423604 CGAAGTTGCAAAATAATCACCCTTTT 59.576 34.615 0.00 0.00 0.00 2.27
323 327 3.083349 TGTCATGGCTCCCCTCCG 61.083 66.667 0.00 0.00 0.00 4.63
407 411 5.123186 CACAAAGATATCGTTGTTGGGCTTA 59.877 40.000 27.61 0.00 43.99 3.09
434 438 2.102357 AGCACGACCGTATGCGAG 59.898 61.111 4.21 0.00 46.74 5.03
436 440 3.913573 GCAGCACGACCGTATGCG 61.914 66.667 13.49 0.00 46.74 4.73
476 480 3.554934 AGCAAAACAGAGTCAATGGACA 58.445 40.909 2.34 0.00 46.80 4.02
489 493 2.224018 GGTGCCAAAGATGAGCAAAACA 60.224 45.455 0.00 0.00 35.47 2.83
490 494 2.407090 GGTGCCAAAGATGAGCAAAAC 58.593 47.619 0.00 0.00 35.47 2.43
509 513 2.124736 CCAGTACCATGGCACGGG 60.125 66.667 18.52 18.52 32.48 5.28
524 528 2.291346 TGTTCTCCGTCACCTATCTCCA 60.291 50.000 0.00 0.00 0.00 3.86
534 538 4.304110 GAAGTGTAACATGTTCTCCGTCA 58.696 43.478 15.85 3.72 41.43 4.35
553 557 3.505464 ATTGACCGAACGAGTAGGAAG 57.495 47.619 0.00 0.00 0.00 3.46
556 560 2.159476 TCGAATTGACCGAACGAGTAGG 60.159 50.000 0.00 0.00 32.64 3.18
569 573 1.926561 CTGCTCCGATGTCGAATTGA 58.073 50.000 3.62 0.00 43.02 2.57
575 579 1.524355 CAATTAGCTGCTCCGATGTCG 59.476 52.381 4.91 0.00 39.44 4.35
627 672 6.701841 GTGATGTTGTCCAACGATATGATAGT 59.298 38.462 5.75 0.00 43.94 2.12
628 673 6.146184 GGTGATGTTGTCCAACGATATGATAG 59.854 42.308 5.75 0.00 43.94 2.08
632 677 3.938334 TGGTGATGTTGTCCAACGATATG 59.062 43.478 5.75 0.00 43.94 1.78
636 681 2.333688 TTGGTGATGTTGTCCAACGA 57.666 45.000 5.75 0.00 43.94 3.85
637 682 3.004210 TCATTTGGTGATGTTGTCCAACG 59.996 43.478 5.75 0.00 43.94 4.10
664 709 3.004734 GCCAAATAGCGATGCCAAGTAAT 59.995 43.478 0.00 0.00 0.00 1.89
694 741 4.521130 TTCAAGCACCACACTAGACTAG 57.479 45.455 8.00 8.00 0.00 2.57
695 742 4.948341 TTTCAAGCACCACACTAGACTA 57.052 40.909 0.00 0.00 0.00 2.59
696 743 3.838244 TTTCAAGCACCACACTAGACT 57.162 42.857 0.00 0.00 0.00 3.24
697 744 4.127171 TCTTTTCAAGCACCACACTAGAC 58.873 43.478 0.00 0.00 0.00 2.59
698 745 4.415881 TCTTTTCAAGCACCACACTAGA 57.584 40.909 0.00 0.00 0.00 2.43
851 898 2.633509 CCACAGCTGCAAAGGAGGC 61.634 63.158 15.27 0.00 0.00 4.70
852 899 1.975407 CCCACAGCTGCAAAGGAGG 60.975 63.158 15.27 4.48 0.00 4.30
853 900 1.975407 CCCCACAGCTGCAAAGGAG 60.975 63.158 15.27 0.00 0.00 3.69
854 901 2.115910 CCCCACAGCTGCAAAGGA 59.884 61.111 15.27 0.00 0.00 3.36
855 902 1.833934 AACCCCACAGCTGCAAAGG 60.834 57.895 15.27 12.25 0.00 3.11
876 923 2.390696 GGTAGGGAGGGAGAAGAGAAC 58.609 57.143 0.00 0.00 0.00 3.01
894 941 2.977580 GTCGGGGAAGATTTATAGGGGT 59.022 50.000 0.00 0.00 0.00 4.95
896 943 2.612221 GCGTCGGGGAAGATTTATAGGG 60.612 54.545 0.00 0.00 0.00 3.53
897 944 2.612221 GGCGTCGGGGAAGATTTATAGG 60.612 54.545 0.00 0.00 0.00 2.57
949 1014 2.704065 AGTGCAGTGTACTAGGTTGGTT 59.296 45.455 12.63 0.00 0.00 3.67
950 1015 2.037251 CAGTGCAGTGTACTAGGTTGGT 59.963 50.000 13.89 0.00 0.00 3.67
951 1016 2.037251 ACAGTGCAGTGTACTAGGTTGG 59.963 50.000 25.58 3.24 0.00 3.77
952 1017 3.386768 ACAGTGCAGTGTACTAGGTTG 57.613 47.619 25.58 4.87 0.00 3.77
983 1048 1.765657 ATCCTCCTCCTCCTGCTGC 60.766 63.158 0.00 0.00 0.00 5.25
984 1049 1.409251 CCATCCTCCTCCTCCTGCTG 61.409 65.000 0.00 0.00 0.00 4.41
985 1050 1.074623 CCATCCTCCTCCTCCTGCT 60.075 63.158 0.00 0.00 0.00 4.24
986 1051 1.383803 ACCATCCTCCTCCTCCTGC 60.384 63.158 0.00 0.00 0.00 4.85
987 1052 1.053264 CCACCATCCTCCTCCTCCTG 61.053 65.000 0.00 0.00 0.00 3.86
988 1053 1.316266 CCACCATCCTCCTCCTCCT 59.684 63.158 0.00 0.00 0.00 3.69
1369 1444 4.697352 TCAAAATGCTAGAAGAAGACTGGC 59.303 41.667 0.00 0.00 41.14 4.85
1375 1450 6.750963 GGCAAAGATCAAAATGCTAGAAGAAG 59.249 38.462 0.00 0.00 38.79 2.85
1408 1483 7.330946 CCAACAAGTATTCTGAATCGTGTAGAA 59.669 37.037 6.10 0.00 35.19 2.10
1485 1564 1.988293 TGGTTCCGCATCCAGAAAAA 58.012 45.000 0.00 0.00 0.00 1.94
1486 1565 2.214376 ATGGTTCCGCATCCAGAAAA 57.786 45.000 0.00 0.00 37.14 2.29
1488 1567 3.013921 GTTAATGGTTCCGCATCCAGAA 58.986 45.455 0.00 0.00 37.14 3.02
1490 1569 2.364632 TGTTAATGGTTCCGCATCCAG 58.635 47.619 0.00 0.00 37.14 3.86
1491 1570 2.498644 TGTTAATGGTTCCGCATCCA 57.501 45.000 0.00 0.00 38.14 3.41
1492 1571 3.380004 TGATTGTTAATGGTTCCGCATCC 59.620 43.478 0.00 0.00 0.00 3.51
1538 1638 6.525578 AGTGAGTGACCTAACGATTTCATA 57.474 37.500 0.00 0.00 0.00 2.15
1539 1639 5.407407 AGTGAGTGACCTAACGATTTCAT 57.593 39.130 0.00 0.00 0.00 2.57
1540 1640 4.866508 AGTGAGTGACCTAACGATTTCA 57.133 40.909 0.00 0.00 0.00 2.69
1542 1642 5.475909 TGAGTAGTGAGTGACCTAACGATTT 59.524 40.000 0.00 0.00 0.00 2.17
1543 1643 5.008331 TGAGTAGTGAGTGACCTAACGATT 58.992 41.667 0.00 0.00 0.00 3.34
1544 1644 4.395542 GTGAGTAGTGAGTGACCTAACGAT 59.604 45.833 0.00 0.00 0.00 3.73
1545 1645 3.750130 GTGAGTAGTGAGTGACCTAACGA 59.250 47.826 0.00 0.00 0.00 3.85
1546 1646 3.752222 AGTGAGTAGTGAGTGACCTAACG 59.248 47.826 0.00 0.00 0.00 3.18
1547 1647 5.163733 GCTAGTGAGTAGTGAGTGACCTAAC 60.164 48.000 0.00 0.00 0.00 2.34
1548 1648 4.942483 GCTAGTGAGTAGTGAGTGACCTAA 59.058 45.833 0.00 0.00 0.00 2.69
1549 1649 4.225492 AGCTAGTGAGTAGTGAGTGACCTA 59.775 45.833 0.00 0.00 0.00 3.08
1550 1650 3.009695 AGCTAGTGAGTAGTGAGTGACCT 59.990 47.826 0.00 0.00 0.00 3.85
1551 1651 3.349022 AGCTAGTGAGTAGTGAGTGACC 58.651 50.000 0.00 0.00 0.00 4.02
1552 1652 5.411977 TGTAAGCTAGTGAGTAGTGAGTGAC 59.588 44.000 0.00 0.00 0.00 3.67
1553 1653 5.557866 TGTAAGCTAGTGAGTAGTGAGTGA 58.442 41.667 0.00 0.00 0.00 3.41
1554 1654 5.881777 TGTAAGCTAGTGAGTAGTGAGTG 57.118 43.478 0.00 0.00 0.00 3.51
1555 1655 5.416326 CCTTGTAAGCTAGTGAGTAGTGAGT 59.584 44.000 0.00 0.00 0.00 3.41
1556 1656 5.416326 ACCTTGTAAGCTAGTGAGTAGTGAG 59.584 44.000 0.00 0.00 0.00 3.51
1557 1657 5.322754 ACCTTGTAAGCTAGTGAGTAGTGA 58.677 41.667 0.00 0.00 0.00 3.41
1558 1658 5.646577 ACCTTGTAAGCTAGTGAGTAGTG 57.353 43.478 0.00 0.00 0.00 2.74
1559 1659 6.483405 ACTACCTTGTAAGCTAGTGAGTAGT 58.517 40.000 8.68 8.68 34.57 2.73
1560 1660 7.251994 CAACTACCTTGTAAGCTAGTGAGTAG 58.748 42.308 0.00 0.00 30.06 2.57
1561 1661 6.152323 CCAACTACCTTGTAAGCTAGTGAGTA 59.848 42.308 0.00 0.00 30.06 2.59
1562 1662 5.047235 CCAACTACCTTGTAAGCTAGTGAGT 60.047 44.000 0.00 0.00 30.06 3.41
1563 1663 5.185249 TCCAACTACCTTGTAAGCTAGTGAG 59.815 44.000 0.00 0.00 30.06 3.51
1581 1681 7.928167 GGAGAAAGAAATGAACATTTTCCAACT 59.072 33.333 16.46 11.73 40.77 3.16
1596 1696 3.629087 CAGCATCCCTGGAGAAAGAAAT 58.371 45.455 0.00 0.00 37.93 2.17
1650 1755 4.470334 TCATGATGCAGCACACTAGTAA 57.530 40.909 6.89 0.00 0.00 2.24
1702 1807 3.936461 TCCTCCTTTGCCTAAGCCTATA 58.064 45.455 0.00 0.00 38.69 1.31
1777 1882 6.324770 ACACACCCAAAAGAAAATGATTCTCT 59.675 34.615 0.00 0.00 0.00 3.10
1786 1891 3.056465 GTGGACACACACCCAAAAGAAAA 60.056 43.478 0.00 0.00 46.90 2.29
1789 1894 1.757682 GTGGACACACACCCAAAAGA 58.242 50.000 0.00 0.00 46.90 2.52
1938 2045 5.296151 TGATTCCTGAATGGTATGAGGTC 57.704 43.478 0.00 0.00 37.07 3.85
1966 2073 3.643199 TGGGCATGTGACATAAGCTTA 57.357 42.857 8.99 8.99 0.00 3.09
2094 2202 7.122501 ACAAAGCCAGGTTCAAAATTTCAAATT 59.877 29.630 0.00 0.00 0.00 1.82
2102 2210 3.454082 TCCAACAAAGCCAGGTTCAAAAT 59.546 39.130 0.00 0.00 0.00 1.82
2156 2264 4.021368 GGAGGAACTAGTAAAGCACTGTCA 60.021 45.833 0.00 0.00 41.55 3.58
2157 2265 4.221041 AGGAGGAACTAGTAAAGCACTGTC 59.779 45.833 0.00 0.00 41.55 3.51
2189 2297 4.170292 TCTCTAAGCACCTTCGTTGTAC 57.830 45.455 0.00 0.00 0.00 2.90
2196 2304 8.499403 ACTGATTTATTTCTCTAAGCACCTTC 57.501 34.615 0.00 0.00 0.00 3.46
2315 2424 9.202273 CAATGCAAGGTGCTTAGTAAAATAAAA 57.798 29.630 0.00 0.00 45.31 1.52
2360 2624 3.106827 TCCAGATCAGACCAGTGCATTA 58.893 45.455 0.00 0.00 0.00 1.90
2459 2723 2.821969 ACCTGAATTCAGCAACCACATC 59.178 45.455 27.01 0.00 42.47 3.06
2472 2736 5.044179 TGGAAATCACCTGGATACCTGAATT 60.044 40.000 0.00 0.00 34.28 2.17
2480 2744 4.927267 AACACTGGAAATCACCTGGATA 57.073 40.909 0.00 0.00 34.28 2.59
2497 2761 1.264288 GTCTGCAGCCTGTGTTAACAC 59.736 52.381 28.13 28.13 46.59 3.32
2536 2802 7.479980 GCCTAACAATAACTGCATATTTCACA 58.520 34.615 0.00 0.00 0.00 3.58
2566 2832 5.121454 GTCTGTTCCAATGTTTGTTTGCAAA 59.879 36.000 8.05 8.05 41.77 3.68
2602 2868 2.042464 CCCAGCATAGTGAGCTCCTAA 58.958 52.381 12.15 0.00 41.14 2.69
2691 2970 7.122501 TGTCAATCTGTAAATGGCAATACATGT 59.877 33.333 14.45 2.69 32.02 3.21
2699 2978 5.192176 TGCTATGTCAATCTGTAAATGGCA 58.808 37.500 0.00 0.00 32.58 4.92
2801 3187 8.443937 GTGAAACTGTATTTCAGAACCTGATAC 58.556 37.037 2.40 0.19 46.27 2.24
2839 3226 6.796426 TGTTCATAAATGTCACGGAAACAAA 58.204 32.000 0.00 0.00 0.00 2.83
2840 3227 6.378710 TGTTCATAAATGTCACGGAAACAA 57.621 33.333 0.00 0.00 0.00 2.83
2868 3255 4.921515 CCTGCAACATCAAATTTGACTGAG 59.078 41.667 22.71 14.71 40.49 3.35
2869 3256 4.796946 GCCTGCAACATCAAATTTGACTGA 60.797 41.667 22.71 1.12 40.49 3.41
3004 3391 0.326048 AGGGAGTGGACTGATCTGGG 60.326 60.000 4.49 0.00 0.00 4.45
3013 3400 1.255667 TAGGACGCAAGGGAGTGGAC 61.256 60.000 0.00 0.00 46.39 4.02
3126 3513 6.601332 AGTGACTTTCCAGAAGTAAAATGGA 58.399 36.000 0.00 0.00 41.33 3.41
3145 3532 3.190874 CAGCCGGATAAAGAGAAGTGAC 58.809 50.000 5.05 0.00 0.00 3.67
3164 3551 5.365605 TCACCATAATCCCCACTAGTAACAG 59.634 44.000 0.00 0.00 0.00 3.16
3183 3570 2.325484 TCTAGTGTTCCAGCTTCACCA 58.675 47.619 0.00 0.00 33.21 4.17
3195 3582 9.354673 TGAAAATCTTTCAGGAATTCTAGTGTT 57.645 29.630 5.23 0.00 0.00 3.32
3267 3654 4.865776 TGTTAGGGATTGTTTCAAAAGCG 58.134 39.130 0.00 0.00 0.00 4.68
3330 3717 7.502561 ACTGTAAAATTTGAGGTAGCATATCCC 59.497 37.037 0.00 0.00 0.00 3.85
3390 3777 7.066307 ACATATGCCTACAAGATACATCACA 57.934 36.000 1.58 0.00 0.00 3.58
3633 4020 7.767261 TGACTTGCATTTGTTTACTTACAACT 58.233 30.769 0.00 0.00 37.72 3.16
3634 4021 7.167468 CCTGACTTGCATTTGTTTACTTACAAC 59.833 37.037 0.00 0.00 37.72 3.32
3635 4022 7.199766 CCTGACTTGCATTTGTTTACTTACAA 58.800 34.615 0.00 0.00 36.30 2.41
3636 4023 6.734137 CCTGACTTGCATTTGTTTACTTACA 58.266 36.000 0.00 0.00 0.00 2.41
3637 4024 5.629435 GCCTGACTTGCATTTGTTTACTTAC 59.371 40.000 0.00 0.00 0.00 2.34
3639 4026 4.620982 GCCTGACTTGCATTTGTTTACTT 58.379 39.130 0.00 0.00 0.00 2.24
3640 4027 3.304659 CGCCTGACTTGCATTTGTTTACT 60.305 43.478 0.00 0.00 0.00 2.24
3657 4044 2.262292 CCAAAACATGGGCGCCTG 59.738 61.111 28.56 20.60 46.27 4.85
3674 4100 6.091713 ACACGGTAAGATACTATTTGTGCAAC 59.908 38.462 0.00 0.00 37.35 4.17
3677 4103 6.657836 AACACGGTAAGATACTATTTGTGC 57.342 37.500 0.00 0.00 0.00 4.57
3678 4104 9.362539 AGTTAACACGGTAAGATACTATTTGTG 57.637 33.333 8.61 0.00 0.00 3.33
3686 4112 5.713025 TCACCAGTTAACACGGTAAGATAC 58.287 41.667 16.75 0.00 31.22 2.24
3696 4122 1.532868 CTGCTGCTCACCAGTTAACAC 59.467 52.381 8.61 0.00 43.71 3.32
3699 4125 0.108396 TGCTGCTGCTCACCAGTTAA 59.892 50.000 17.00 0.00 43.71 2.01
3706 4132 0.879765 AGAACATTGCTGCTGCTCAC 59.120 50.000 17.00 3.05 40.48 3.51
3717 4143 7.754924 ACACAGTTAGTCAAACAAAGAACATTG 59.245 33.333 0.00 0.00 40.83 2.82
3721 4147 7.060633 CACAACACAGTTAGTCAAACAAAGAAC 59.939 37.037 0.00 0.00 40.83 3.01
3737 4164 1.138266 AGTAACGGAGCACAACACAGT 59.862 47.619 0.00 0.00 0.00 3.55
3752 4179 2.526304 TGTCTGTGACCTGCAGTAAC 57.474 50.000 13.81 8.26 35.60 2.50
3755 4182 0.533755 GCTTGTCTGTGACCTGCAGT 60.534 55.000 13.81 0.11 35.60 4.40
3757 4184 1.227943 GGCTTGTCTGTGACCTGCA 60.228 57.895 11.67 0.00 33.73 4.41
3758 4185 0.819259 TTGGCTTGTCTGTGACCTGC 60.819 55.000 0.00 0.00 32.22 4.85
3815 4242 0.247736 CCACCCACTCCTTTCTCTCG 59.752 60.000 0.00 0.00 0.00 4.04
3820 4247 3.503800 AACTTACCACCCACTCCTTTC 57.496 47.619 0.00 0.00 0.00 2.62
3850 4277 2.254546 TCGAAAACAGGCATCAGTGT 57.745 45.000 0.00 0.00 0.00 3.55
3853 4280 5.447818 GGTTTCTATCGAAAACAGGCATCAG 60.448 44.000 12.03 0.00 44.44 2.90
3855 4282 4.636206 AGGTTTCTATCGAAAACAGGCATC 59.364 41.667 10.10 0.00 46.83 3.91
3857 4284 4.000988 GAGGTTTCTATCGAAAACAGGCA 58.999 43.478 10.10 0.00 46.83 4.75
3858 4285 4.254492 AGAGGTTTCTATCGAAAACAGGC 58.746 43.478 10.10 0.17 46.83 4.85
3873 4300 9.936759 TTTTGTGTTCAGAAAAATAAGAGGTTT 57.063 25.926 5.59 0.00 0.00 3.27
3885 4313 3.130340 GGCAGGTCTTTTGTGTTCAGAAA 59.870 43.478 0.00 0.00 0.00 2.52
3900 4328 5.193679 AGTTAGGTATTTGATTGGCAGGTC 58.806 41.667 0.00 0.00 0.00 3.85
3904 4332 7.195374 ACTAGAGTTAGGTATTTGATTGGCA 57.805 36.000 0.00 0.00 0.00 4.92
3905 4333 8.507524 AAACTAGAGTTAGGTATTTGATTGGC 57.492 34.615 0.00 0.00 37.25 4.52
3938 4366 9.165057 AGGAATAGATAACCAAGCTAGAATTCT 57.835 33.333 13.56 13.56 0.00 2.40
3939 4367 9.785982 AAGGAATAGATAACCAAGCTAGAATTC 57.214 33.333 0.00 0.00 0.00 2.17
3943 4371 8.548877 ACAAAAGGAATAGATAACCAAGCTAGA 58.451 33.333 0.00 0.00 0.00 2.43
3944 4372 8.738645 ACAAAAGGAATAGATAACCAAGCTAG 57.261 34.615 0.00 0.00 0.00 3.42
3945 4373 9.528489 AAACAAAAGGAATAGATAACCAAGCTA 57.472 29.630 0.00 0.00 0.00 3.32
3946 4374 8.422577 AAACAAAAGGAATAGATAACCAAGCT 57.577 30.769 0.00 0.00 0.00 3.74
3947 4375 9.489084 AAAAACAAAAGGAATAGATAACCAAGC 57.511 29.630 0.00 0.00 0.00 4.01
3973 4401 2.270352 ACGGCTGAGTGGAAAAATGA 57.730 45.000 0.00 0.00 0.00 2.57
3980 4408 0.541063 TTGACCTACGGCTGAGTGGA 60.541 55.000 0.00 0.00 0.00 4.02
3982 4410 1.000955 AGTTTGACCTACGGCTGAGTG 59.999 52.381 0.00 0.00 0.00 3.51
3983 4411 1.000955 CAGTTTGACCTACGGCTGAGT 59.999 52.381 0.00 0.00 0.00 3.41
3988 4416 4.214758 ACATTTTACAGTTTGACCTACGGC 59.785 41.667 0.00 0.00 0.00 5.68
4011 4439 9.154847 CGCTATGGATGTTCATCTATTCATTTA 57.845 33.333 14.77 0.00 0.00 1.40
4015 4443 6.345096 TCGCTATGGATGTTCATCTATTCA 57.655 37.500 14.77 4.91 0.00 2.57
4016 4444 7.201591 CCAATCGCTATGGATGTTCATCTATTC 60.202 40.741 14.77 8.25 40.56 1.75
4033 5233 4.072131 GGGAAGCAAATATCCAATCGCTA 58.928 43.478 0.00 0.00 37.46 4.26
4035 5235 2.622942 TGGGAAGCAAATATCCAATCGC 59.377 45.455 0.00 0.00 37.46 4.58
4057 5257 4.700213 GCAATAGTGTTCTTTCTTGCCCTA 59.300 41.667 0.00 0.00 34.41 3.53
4060 5260 4.479619 CTGCAATAGTGTTCTTTCTTGCC 58.520 43.478 0.00 0.00 38.50 4.52
4073 5273 1.819753 TATGCCTCCCCTGCAATAGT 58.180 50.000 0.00 0.00 42.92 2.12
4074 5274 2.887152 GTTTATGCCTCCCCTGCAATAG 59.113 50.000 0.00 0.00 42.92 1.73
4077 5277 0.704076 AGTTTATGCCTCCCCTGCAA 59.296 50.000 0.00 0.00 42.92 4.08
4079 5279 2.959465 ATAGTTTATGCCTCCCCTGC 57.041 50.000 0.00 0.00 0.00 4.85
4081 5281 4.503685 TCCTATAGTTTATGCCTCCCCT 57.496 45.455 0.00 0.00 0.00 4.79
4082 5282 5.578157 TTTCCTATAGTTTATGCCTCCCC 57.422 43.478 0.00 0.00 0.00 4.81
4121 5335 4.871933 TCAGATGCAACAGAGTAACTCA 57.128 40.909 0.00 0.00 32.06 3.41
4123 5337 8.798859 AATAAATCAGATGCAACAGAGTAACT 57.201 30.769 0.00 0.00 0.00 2.24
4124 5338 9.495754 GAAATAAATCAGATGCAACAGAGTAAC 57.504 33.333 0.00 0.00 0.00 2.50
4125 5339 9.230122 TGAAATAAATCAGATGCAACAGAGTAA 57.770 29.630 0.00 0.00 0.00 2.24
4127 5341 7.692460 TGAAATAAATCAGATGCAACAGAGT 57.308 32.000 0.00 0.00 0.00 3.24
4128 5342 7.220300 GCTTGAAATAAATCAGATGCAACAGAG 59.780 37.037 0.00 0.00 0.00 3.35
4130 5344 6.809689 TGCTTGAAATAAATCAGATGCAACAG 59.190 34.615 0.00 0.00 32.84 3.16
4132 5346 6.237755 GCTGCTTGAAATAAATCAGATGCAAC 60.238 38.462 0.00 0.00 34.23 4.17
4135 5351 4.743644 GGCTGCTTGAAATAAATCAGATGC 59.256 41.667 0.00 0.00 0.00 3.91
4137 5353 6.239232 GGATGGCTGCTTGAAATAAATCAGAT 60.239 38.462 0.00 0.00 0.00 2.90
4143 5359 4.343231 TGAGGATGGCTGCTTGAAATAAA 58.657 39.130 0.00 0.00 0.00 1.40
4151 5367 1.133853 GGAAGATGAGGATGGCTGCTT 60.134 52.381 0.00 0.00 0.00 3.91
4152 5368 0.473326 GGAAGATGAGGATGGCTGCT 59.527 55.000 0.00 0.00 0.00 4.24
4161 5377 3.282885 GCTAACCAAAGGGAAGATGAGG 58.717 50.000 0.00 0.00 38.05 3.86
4168 5384 3.799432 TTAGCTGCTAACCAAAGGGAA 57.201 42.857 17.67 0.00 38.05 3.97
4186 5402 4.559153 GTGGCTCGGTACAACTACTTTTA 58.441 43.478 0.00 0.00 0.00 1.52
4191 5407 0.108472 GGGTGGCTCGGTACAACTAC 60.108 60.000 0.00 0.00 0.00 2.73
4193 5409 1.535687 AGGGTGGCTCGGTACAACT 60.536 57.895 0.00 0.00 0.00 3.16
4194 5410 1.079336 GAGGGTGGCTCGGTACAAC 60.079 63.158 0.00 0.00 0.00 3.32
4196 5412 0.040058 TTAGAGGGTGGCTCGGTACA 59.960 55.000 0.00 0.00 0.00 2.90
4197 5413 0.745468 CTTAGAGGGTGGCTCGGTAC 59.255 60.000 0.00 0.00 0.00 3.34
4198 5414 1.041447 GCTTAGAGGGTGGCTCGGTA 61.041 60.000 0.00 0.00 0.00 4.02
4199 5415 2.359967 GCTTAGAGGGTGGCTCGGT 61.360 63.158 0.00 0.00 0.00 4.69
4200 5416 2.501610 GCTTAGAGGGTGGCTCGG 59.498 66.667 0.00 0.00 0.00 4.63
4201 5417 2.022240 GAGGCTTAGAGGGTGGCTCG 62.022 65.000 0.00 0.00 42.02 5.03
4202 5418 1.826709 GAGGCTTAGAGGGTGGCTC 59.173 63.158 0.00 0.00 43.97 4.70
4203 5419 0.980231 CAGAGGCTTAGAGGGTGGCT 60.980 60.000 0.00 0.00 39.33 4.75
4210 5426 8.644374 ATTATTAGTAGGACAGAGGCTTAGAG 57.356 38.462 0.00 0.00 0.00 2.43
4235 5451 9.483489 TTGTAGAACAACCTCAAGGATACTATA 57.517 33.333 2.30 0.00 38.78 1.31
4259 5475 7.757097 AGCGTATCATTAGTGTTTAGAGTTG 57.243 36.000 0.00 0.00 0.00 3.16
4265 5481 8.394877 CCAAATGAAGCGTATCATTAGTGTTTA 58.605 33.333 15.16 0.00 46.57 2.01
4280 5496 0.387622 CCTGCACACCAAATGAAGCG 60.388 55.000 0.00 0.00 36.21 4.68
4319 5535 5.446741 GCTTACATAAGAAACGAAATCGCCA 60.447 40.000 2.15 0.00 37.97 5.69
4341 5557 0.957395 CCATCTTTGCACCACTCGCT 60.957 55.000 0.00 0.00 0.00 4.93
4379 5595 0.106769 TTGGAGTTGTCCTGCAGCAA 60.107 50.000 8.66 5.34 42.96 3.91
4415 5631 8.435982 GGGTAGTACTGGTTAAGAGATCTACTA 58.564 40.741 5.39 0.00 0.00 1.82
4417 5633 7.229106 CAGGGTAGTACTGGTTAAGAGATCTAC 59.771 44.444 5.39 0.00 32.38 2.59
4424 5640 2.756760 CGCAGGGTAGTACTGGTTAAGA 59.243 50.000 5.39 0.00 36.48 2.10
4433 5649 0.388294 CCTAAGGCGCAGGGTAGTAC 59.612 60.000 10.83 0.00 0.00 2.73
4442 5658 1.092921 CCGCAAATACCTAAGGCGCA 61.093 55.000 10.83 0.00 45.78 6.09
4446 5662 1.670811 CTGTGCCGCAAATACCTAAGG 59.329 52.381 0.00 0.00 0.00 2.69
4448 5664 2.027561 ACTCTGTGCCGCAAATACCTAA 60.028 45.455 0.00 0.00 0.00 2.69
4452 5668 1.535462 ACAACTCTGTGCCGCAAATAC 59.465 47.619 0.00 0.00 33.30 1.89
4453 5669 1.890876 ACAACTCTGTGCCGCAAATA 58.109 45.000 0.00 0.00 33.30 1.40
4454 5670 1.535462 GTACAACTCTGTGCCGCAAAT 59.465 47.619 0.00 0.00 36.96 2.32
4456 5672 0.882927 GGTACAACTCTGTGCCGCAA 60.883 55.000 0.00 0.00 46.63 4.85
4458 5674 3.562635 GGTACAACTCTGTGCCGC 58.437 61.111 0.00 0.00 46.63 6.53
4461 5677 0.977395 AGGAGGGTACAACTCTGTGC 59.023 55.000 14.18 1.40 36.96 4.57
4462 5678 2.632996 TGAAGGAGGGTACAACTCTGTG 59.367 50.000 14.18 0.00 36.96 3.66
4463 5679 2.900546 CTGAAGGAGGGTACAACTCTGT 59.099 50.000 14.18 5.15 39.75 3.41
4464 5680 3.165875 TCTGAAGGAGGGTACAACTCTG 58.834 50.000 14.18 3.80 35.34 3.35
4465 5681 3.544698 TCTGAAGGAGGGTACAACTCT 57.455 47.619 14.18 0.00 35.34 3.24
4466 5682 3.118592 CCATCTGAAGGAGGGTACAACTC 60.119 52.174 7.97 7.97 40.66 3.01
4467 5683 2.840651 CCATCTGAAGGAGGGTACAACT 59.159 50.000 0.00 0.00 40.66 3.16
4468 5684 2.092914 CCCATCTGAAGGAGGGTACAAC 60.093 54.545 0.00 0.00 43.73 3.32
4469 5685 2.196595 CCCATCTGAAGGAGGGTACAA 58.803 52.381 0.00 0.00 43.73 2.41
4470 5686 1.879575 CCCATCTGAAGGAGGGTACA 58.120 55.000 0.00 0.00 43.73 2.90
4474 5690 2.436173 GAGTAACCCATCTGAAGGAGGG 59.564 54.545 0.00 3.62 46.96 4.30
4475 5691 2.436173 GGAGTAACCCATCTGAAGGAGG 59.564 54.545 0.00 0.00 0.00 4.30
4486 5702 2.980548 AGTAACACCAGGAGTAACCCA 58.019 47.619 0.00 0.00 40.05 4.51
4489 5705 7.658575 TGTTGATAAAGTAACACCAGGAGTAAC 59.341 37.037 0.00 0.00 32.30 2.50
4492 5708 6.182507 TGTTGATAAAGTAACACCAGGAGT 57.817 37.500 0.00 0.00 32.30 3.85
4506 5722 7.283127 GCTAAATCTCAGGGACATGTTGATAAA 59.717 37.037 0.00 0.00 0.00 1.40
4509 5725 5.128919 GCTAAATCTCAGGGACATGTTGAT 58.871 41.667 0.00 0.00 0.00 2.57
4532 5748 4.331992 CAGGAGAACATCACACAGCTATTG 59.668 45.833 0.00 0.00 0.00 1.90
4552 5768 3.488721 GCACAGCTATCTCATTTTGCAGG 60.489 47.826 0.00 0.00 0.00 4.85
4553 5769 3.128068 TGCACAGCTATCTCATTTTGCAG 59.872 43.478 0.00 0.00 33.94 4.41
4554 5770 3.083293 TGCACAGCTATCTCATTTTGCA 58.917 40.909 0.00 0.00 36.42 4.08
4555 5771 3.128242 AGTGCACAGCTATCTCATTTTGC 59.872 43.478 21.04 0.00 0.00 3.68
4583 5799 2.126888 CACACCGCCATTTCGCAC 60.127 61.111 0.00 0.00 0.00 5.34
4586 5802 0.591170 AGAAACACACCGCCATTTCG 59.409 50.000 0.00 0.00 36.41 3.46
4594 5810 2.612212 ACTGTTTGCTAGAAACACACCG 59.388 45.455 13.22 8.61 35.45 4.94
4612 5828 5.899120 TCACTCCTTAGTACAGCTTACTG 57.101 43.478 14.89 0.00 41.28 2.74
4613 5829 5.297278 CGATCACTCCTTAGTACAGCTTACT 59.703 44.000 11.59 11.59 33.48 2.24
4614 5830 5.512473 CGATCACTCCTTAGTACAGCTTAC 58.488 45.833 0.00 0.00 33.48 2.34
4616 5832 3.181485 GCGATCACTCCTTAGTACAGCTT 60.181 47.826 0.00 0.00 33.48 3.74
4618 5834 2.099263 TGCGATCACTCCTTAGTACAGC 59.901 50.000 0.00 0.00 33.48 4.40
4619 5835 4.355437 CTTGCGATCACTCCTTAGTACAG 58.645 47.826 0.00 0.00 33.48 2.74
4621 5837 3.117046 GCTTGCGATCACTCCTTAGTAC 58.883 50.000 0.00 0.00 33.48 2.73
4622 5838 2.758423 TGCTTGCGATCACTCCTTAGTA 59.242 45.455 0.00 0.00 33.48 1.82
4623 5839 1.550524 TGCTTGCGATCACTCCTTAGT 59.449 47.619 0.00 0.00 35.91 2.24
4625 5841 1.550524 ACTGCTTGCGATCACTCCTTA 59.449 47.619 0.00 0.00 0.00 2.69
4626 5842 0.322975 ACTGCTTGCGATCACTCCTT 59.677 50.000 0.00 0.00 0.00 3.36
4628 5844 1.661112 GTTACTGCTTGCGATCACTCC 59.339 52.381 0.00 0.00 0.00 3.85
4629 5845 2.337583 TGTTACTGCTTGCGATCACTC 58.662 47.619 0.00 0.00 0.00 3.51
4630 5846 2.341257 CTGTTACTGCTTGCGATCACT 58.659 47.619 0.00 0.00 0.00 3.41
4632 5848 1.078709 GCTGTTACTGCTTGCGATCA 58.921 50.000 6.98 0.00 0.00 2.92
4633 5849 3.885777 GCTGTTACTGCTTGCGATC 57.114 52.632 6.98 0.00 0.00 3.69
4636 5852 0.179240 CTTCGCTGTTACTGCTTGCG 60.179 55.000 12.10 0.00 46.71 4.85
4648 5882 3.921021 CACTCCTTAGTACAACTTCGCTG 59.079 47.826 0.00 0.00 33.48 5.18
4651 5885 4.167268 GCTCACTCCTTAGTACAACTTCG 58.833 47.826 0.00 0.00 33.48 3.79
4663 5897 3.677424 GCAGATAGTTTCGCTCACTCCTT 60.677 47.826 0.00 0.00 0.00 3.36
4669 5903 0.806102 GCCGCAGATAGTTTCGCTCA 60.806 55.000 0.00 0.00 0.00 4.26
4679 5913 0.249447 CATGAACCTCGCCGCAGATA 60.249 55.000 0.00 0.00 0.00 1.98
4682 5916 2.125552 TCATGAACCTCGCCGCAG 60.126 61.111 0.00 0.00 0.00 5.18
4710 5945 6.825721 ACATTGCCTCAAACTCTCTTAATAGG 59.174 38.462 0.00 0.00 0.00 2.57
4740 5975 8.642432 CCTCCATAACAACTCAGAATCTGTATA 58.358 37.037 10.36 0.00 32.61 1.47
4766 6001 5.757850 AGCAGCTTATTGCAGGTTAATAC 57.242 39.130 0.00 0.00 46.47 1.89
4792 6027 3.213506 AGACAGCATTAGCACACAACAA 58.786 40.909 0.00 0.00 45.49 2.83
4801 6036 1.826385 ACCCACAAGACAGCATTAGC 58.174 50.000 0.00 0.00 42.56 3.09
4805 6145 3.957288 GGTACCCACAAGACAGCAT 57.043 52.632 0.00 0.00 0.00 3.79
4815 6155 5.748436 TGGTACAATAAAACAGGGTACCCAC 60.748 44.000 32.70 16.37 46.04 4.61
4886 6230 7.288621 AGTGATGAAAGAAACCAGGAAAATTCT 59.711 33.333 0.00 0.00 33.73 2.40
4892 6236 5.047566 TCAGTGATGAAAGAAACCAGGAA 57.952 39.130 0.00 0.00 0.00 3.36
4915 6262 9.332301 CAATGATTTTGTTGGCAATTTTGTATC 57.668 29.630 1.92 3.50 34.18 2.24
4969 6316 9.236006 GGGAAATACATGCATAATAGTTGAGAT 57.764 33.333 0.00 0.00 0.00 2.75
4970 6317 8.439971 AGGGAAATACATGCATAATAGTTGAGA 58.560 33.333 0.00 0.00 0.00 3.27
4971 6318 8.627208 AGGGAAATACATGCATAATAGTTGAG 57.373 34.615 0.00 0.00 0.00 3.02
4972 6319 8.995027 AAGGGAAATACATGCATAATAGTTGA 57.005 30.769 0.00 0.00 0.00 3.18
4973 6320 9.467258 CAAAGGGAAATACATGCATAATAGTTG 57.533 33.333 0.00 0.00 0.00 3.16
4974 6321 8.641541 CCAAAGGGAAATACATGCATAATAGTT 58.358 33.333 0.00 0.32 35.59 2.24
4975 6322 8.004215 TCCAAAGGGAAATACATGCATAATAGT 58.996 33.333 0.00 0.00 41.32 2.12
4976 6323 8.408043 TCCAAAGGGAAATACATGCATAATAG 57.592 34.615 0.00 0.00 41.32 1.73
4996 6343 6.493458 CCTAGGGAGAATTCTTTGTTTCCAAA 59.507 38.462 9.87 0.00 38.22 3.28
4997 6344 6.010219 CCTAGGGAGAATTCTTTGTTTCCAA 58.990 40.000 9.87 0.00 0.00 3.53
4998 6345 5.516591 CCCTAGGGAGAATTCTTTGTTTCCA 60.517 44.000 24.99 0.00 37.50 3.53
4999 6346 4.950475 CCCTAGGGAGAATTCTTTGTTTCC 59.050 45.833 24.99 5.03 37.50 3.13
5000 6347 5.571285 ACCCTAGGGAGAATTCTTTGTTTC 58.429 41.667 35.38 0.00 38.96 2.78
5001 6348 5.600669 ACCCTAGGGAGAATTCTTTGTTT 57.399 39.130 35.38 3.03 38.96 2.83
5002 6349 5.600669 AACCCTAGGGAGAATTCTTTGTT 57.399 39.130 35.38 10.46 38.96 2.83
5003 6350 5.600669 AAACCCTAGGGAGAATTCTTTGT 57.399 39.130 35.38 3.78 38.96 2.83
5004 6351 5.419155 GGAAAACCCTAGGGAGAATTCTTTG 59.581 44.000 35.38 3.05 38.96 2.77
5005 6352 5.316183 AGGAAAACCCTAGGGAGAATTCTTT 59.684 40.000 35.38 18.68 45.48 2.52
5006 6353 4.858519 AGGAAAACCCTAGGGAGAATTCTT 59.141 41.667 35.38 22.15 45.48 2.52
5007 6354 4.449389 AGGAAAACCCTAGGGAGAATTCT 58.551 43.478 35.38 19.23 45.48 2.40
5008 6355 4.864483 AGGAAAACCCTAGGGAGAATTC 57.136 45.455 35.38 26.40 45.48 2.17
5020 6367 7.054124 TGTATATCAGTGATGAAGGAAAACCC 58.946 38.462 16.15 0.00 0.00 4.11
5021 6368 8.506168 TTGTATATCAGTGATGAAGGAAAACC 57.494 34.615 16.15 0.00 0.00 3.27
5025 6372 9.045223 CGATTTTGTATATCAGTGATGAAGGAA 57.955 33.333 16.15 4.36 0.00 3.36
5026 6373 8.204160 ACGATTTTGTATATCAGTGATGAAGGA 58.796 33.333 16.15 0.00 0.00 3.36
5027 6374 8.370493 ACGATTTTGTATATCAGTGATGAAGG 57.630 34.615 16.15 0.00 0.00 3.46
5028 6375 9.642312 CAACGATTTTGTATATCAGTGATGAAG 57.358 33.333 16.15 0.00 0.00 3.02
5029 6376 9.377312 TCAACGATTTTGTATATCAGTGATGAA 57.623 29.630 16.15 0.48 0.00 2.57
5030 6377 8.817100 GTCAACGATTTTGTATATCAGTGATGA 58.183 33.333 16.15 0.59 0.00 2.92
5031 6378 8.820933 AGTCAACGATTTTGTATATCAGTGATG 58.179 33.333 16.15 0.00 0.00 3.07
5032 6379 8.948631 AGTCAACGATTTTGTATATCAGTGAT 57.051 30.769 11.12 11.12 0.00 3.06
5033 6380 8.655970 CAAGTCAACGATTTTGTATATCAGTGA 58.344 33.333 0.00 0.00 0.00 3.41
5034 6381 8.443160 ACAAGTCAACGATTTTGTATATCAGTG 58.557 33.333 0.00 0.00 32.41 3.66
5035 6382 8.547967 ACAAGTCAACGATTTTGTATATCAGT 57.452 30.769 0.00 0.00 32.41 3.41
5036 6383 9.825972 AAACAAGTCAACGATTTTGTATATCAG 57.174 29.630 0.00 0.00 33.70 2.90
5043 6390 9.878599 CTATCTAAAACAAGTCAACGATTTTGT 57.121 29.630 0.00 0.00 35.43 2.83
5044 6391 9.878599 ACTATCTAAAACAAGTCAACGATTTTG 57.121 29.630 0.00 0.00 0.00 2.44
5046 6393 8.433126 CGACTATCTAAAACAAGTCAACGATTT 58.567 33.333 0.00 0.00 38.60 2.17
5047 6394 7.597743 ACGACTATCTAAAACAAGTCAACGATT 59.402 33.333 0.00 0.00 38.60 3.34
5048 6395 7.061905 CACGACTATCTAAAACAAGTCAACGAT 59.938 37.037 0.00 0.00 38.60 3.73
5049 6396 6.361481 CACGACTATCTAAAACAAGTCAACGA 59.639 38.462 0.00 0.00 38.60 3.85
5050 6397 6.361481 TCACGACTATCTAAAACAAGTCAACG 59.639 38.462 0.00 0.00 38.60 4.10
5051 6398 7.381678 AGTCACGACTATCTAAAACAAGTCAAC 59.618 37.037 0.00 0.00 40.43 3.18
5054 6401 7.381678 ACAAGTCACGACTATCTAAAACAAGTC 59.618 37.037 0.00 0.00 41.58 3.01
5059 6406 8.008279 GGAAAACAAGTCACGACTATCTAAAAC 58.992 37.037 0.00 0.00 41.58 2.43
5064 6411 4.283722 AGGGAAAACAAGTCACGACTATCT 59.716 41.667 0.00 0.00 41.58 1.98
5065 6412 4.389077 CAGGGAAAACAAGTCACGACTATC 59.611 45.833 0.00 0.00 41.58 2.08
5067 6414 3.493699 CCAGGGAAAACAAGTCACGACTA 60.494 47.826 0.00 0.00 41.58 2.59
5077 6424 2.625790 CGGTTTCATCCAGGGAAAACAA 59.374 45.455 14.37 0.00 41.01 2.83
5081 6436 1.004277 CCTCGGTTTCATCCAGGGAAA 59.996 52.381 0.00 0.00 32.18 3.13
5088 6443 2.194201 TTCAACCCTCGGTTTCATCC 57.806 50.000 0.00 0.00 44.33 3.51
5099 6454 2.683211 ACCTGAGCAATTTCAACCCT 57.317 45.000 0.00 0.00 0.00 4.34
5103 6458 6.916360 AAATTCCTACCTGAGCAATTTCAA 57.084 33.333 0.00 0.00 0.00 2.69
5111 6466 4.585879 TGGTACAAAATTCCTACCTGAGC 58.414 43.478 0.00 0.00 31.92 4.26
5200 6558 4.702131 ACACTGAGCTTTGTGTTTTCTCTT 59.298 37.500 16.59 0.00 43.88 2.85
5234 6592 8.136165 AGTGAGTAACTACTGTCTTTACACTTG 58.864 37.037 11.76 0.00 37.36 3.16
5239 6597 7.211966 TGGAGTGAGTAACTACTGTCTTTAC 57.788 40.000 0.00 4.19 40.87 2.01
5242 6600 6.726490 TTTGGAGTGAGTAACTACTGTCTT 57.274 37.500 0.00 0.00 40.87 3.01
5245 6603 5.794894 CCATTTGGAGTGAGTAACTACTGT 58.205 41.667 0.00 0.00 40.87 3.55
5246 6604 4.631813 GCCATTTGGAGTGAGTAACTACTG 59.368 45.833 0.00 0.00 40.87 2.74
5247 6605 4.286032 TGCCATTTGGAGTGAGTAACTACT 59.714 41.667 0.00 0.00 40.87 2.57
5248 6606 4.575885 TGCCATTTGGAGTGAGTAACTAC 58.424 43.478 0.00 0.00 40.07 2.73
5249 6607 4.901197 TGCCATTTGGAGTGAGTAACTA 57.099 40.909 0.00 0.00 40.07 2.24
5251 6609 5.163652 GGTATTGCCATTTGGAGTGAGTAAC 60.164 44.000 0.00 0.00 37.39 2.50
5255 7137 2.355756 CGGTATTGCCATTTGGAGTGAG 59.644 50.000 0.00 0.00 37.39 3.51
5259 7141 1.032014 CCCGGTATTGCCATTTGGAG 58.968 55.000 0.00 0.00 37.39 3.86
5274 7156 5.179452 ACCATGAATTATATCTTCCCCGG 57.821 43.478 0.00 0.00 0.00 5.73
5275 7157 8.807948 ATTAACCATGAATTATATCTTCCCCG 57.192 34.615 0.00 0.00 0.00 5.73
5301 7183 9.998106 GGTACAGTCCATGTAATTACTCATAAT 57.002 33.333 16.33 0.00 45.88 1.28
5420 7316 2.887152 GGTTGGTATGATCTCCATTGGC 59.113 50.000 0.00 0.00 36.71 4.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.