Multiple sequence alignment - TraesCS5D01G063900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G063900 chr5D 100.000 2933 0 0 1 2933 59216844 59213912 0.000000e+00 5417.0
1 TraesCS5D01G063900 chr5A 93.892 1588 71 11 724 2300 47585741 47584169 0.000000e+00 2372.0
2 TraesCS5D01G063900 chr5A 90.663 332 26 2 2554 2881 47567400 47567070 1.250000e-118 436.0
3 TraesCS5D01G063900 chr5A 85.360 403 47 11 1 401 467051907 467051515 9.790000e-110 407.0
4 TraesCS5D01G063900 chr5A 92.982 114 8 0 2390 2503 47583836 47583723 1.810000e-37 167.0
5 TraesCS5D01G063900 chr5A 91.489 47 1 1 2498 2544 47583475 47583432 8.780000e-06 62.1
6 TraesCS5D01G063900 chr5B 92.331 1330 68 16 745 2062 72082221 72083528 0.000000e+00 1860.0
7 TraesCS5D01G063900 chr5B 94.163 1045 57 1 873 1917 72086167 72087207 0.000000e+00 1589.0
8 TraesCS5D01G063900 chr5B 87.952 415 30 8 2511 2917 72090193 72090595 3.420000e-129 472.0
9 TraesCS5D01G063900 chr5B 84.694 392 46 13 1 386 695972684 695973067 2.130000e-101 379.0
10 TraesCS5D01G063900 chr5B 84.536 388 44 14 1 383 79835609 79835233 1.280000e-98 370.0
11 TraesCS5D01G063900 chr5B 78.532 545 75 20 2195 2726 72083998 72084513 1.310000e-83 320.0
12 TraesCS5D01G063900 chr5B 95.522 67 1 2 2129 2193 72083823 72083889 4.000000e-19 106.0
13 TraesCS5D01G063900 chr1B 78.775 914 142 29 1038 1921 142134484 142133593 1.530000e-157 566.0
14 TraesCS5D01G063900 chr3A 84.076 471 64 10 1 468 179350056 179349594 7.460000e-121 444.0
15 TraesCS5D01G063900 chr3A 81.250 112 12 8 1408 1513 465821508 465821400 6.740000e-12 82.4
16 TraesCS5D01G063900 chr4B 86.458 384 44 7 1 383 184157791 184158167 5.850000e-112 414.0
17 TraesCS5D01G063900 chr7B 85.417 384 44 11 1 381 649452628 649453002 3.540000e-104 388.0
18 TraesCS5D01G063900 chr7B 84.872 390 47 10 1 386 605129229 605128848 1.650000e-102 383.0
19 TraesCS5D01G063900 chr7B 83.763 388 50 11 4 386 28613247 28612868 3.600000e-94 355.0
20 TraesCS5D01G063900 chr7B 94.444 36 0 2 2404 2438 483809554 483809520 1.000000e-03 54.7
21 TraesCS5D01G063900 chr1D 85.309 388 44 11 1 383 192922332 192922711 3.540000e-104 388.0
22 TraesCS5D01G063900 chr3D 81.250 112 12 8 1408 1513 338945921 338946029 6.740000e-12 82.4
23 TraesCS5D01G063900 chr3B 80.000 110 11 10 1408 1510 437510389 437510494 1.460000e-08 71.3
24 TraesCS5D01G063900 chr1A 100.000 28 0 0 2413 2440 405821940 405821913 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G063900 chr5D 59213912 59216844 2932 True 5417.000000 5417 100.000000 1 2933 1 chr5D.!!$R1 2932
1 TraesCS5D01G063900 chr5A 47583432 47585741 2309 True 867.033333 2372 92.787667 724 2544 3 chr5A.!!$R3 1820
2 TraesCS5D01G063900 chr5B 72082221 72090595 8374 False 869.400000 1860 89.700000 745 2917 5 chr5B.!!$F2 2172
3 TraesCS5D01G063900 chr1B 142133593 142134484 891 True 566.000000 566 78.775000 1038 1921 1 chr1B.!!$R1 883

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
717 718 0.034337 GTAGGTTTCGCTGTGGGTGA 59.966 55.0 0.0 0.0 0.0 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2381 2786 0.109532 TTTGACATGCCACCCTCGAA 59.89 50.0 0.0 0.0 0.0 3.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.922505 AACATTTCATGAAATTCGAACGAAA 57.077 28.000 27.30 0.85 38.84 3.46
25 26 7.922505 ACATTTCATGAAATTCGAACGAAAA 57.077 28.000 27.30 0.65 38.84 2.29
26 27 8.519492 ACATTTCATGAAATTCGAACGAAAAT 57.481 26.923 27.30 3.84 38.84 1.82
27 28 8.977505 ACATTTCATGAAATTCGAACGAAAATT 58.022 25.926 27.30 11.27 38.84 1.82
28 29 9.451853 CATTTCATGAAATTCGAACGAAAATTC 57.548 29.630 27.30 20.81 38.84 2.17
29 30 8.567369 TTTCATGAAATTCGAACGAAAATTCA 57.433 26.923 26.62 26.62 42.48 2.57
30 31 8.741101 TTCATGAAATTCGAACGAAAATTCAT 57.259 26.923 27.75 27.75 45.17 2.57
31 32 9.833182 TTCATGAAATTCGAACGAAAATTCATA 57.167 25.926 29.94 21.93 44.01 2.15
32 33 9.833182 TCATGAAATTCGAACGAAAATTCATAA 57.167 25.926 29.94 22.84 44.01 1.90
33 34 9.871359 CATGAAATTCGAACGAAAATTCATAAC 57.129 29.630 29.94 14.36 44.01 1.89
34 35 9.840427 ATGAAATTCGAACGAAAATTCATAACT 57.160 25.926 29.70 18.86 44.01 2.24
79 80 7.913674 TTAACAAAAAGTGCAAAATGGAACT 57.086 28.000 0.00 0.00 0.00 3.01
80 81 6.816134 AACAAAAAGTGCAAAATGGAACTT 57.184 29.167 0.00 0.00 0.00 2.66
81 82 6.816134 ACAAAAAGTGCAAAATGGAACTTT 57.184 29.167 0.00 0.00 0.00 2.66
82 83 7.213216 ACAAAAAGTGCAAAATGGAACTTTT 57.787 28.000 6.26 6.26 0.00 2.27
83 84 7.304735 ACAAAAAGTGCAAAATGGAACTTTTC 58.695 30.769 11.32 0.00 0.00 2.29
84 85 7.040823 ACAAAAAGTGCAAAATGGAACTTTTCA 60.041 29.630 11.32 0.00 0.00 2.69
85 86 7.628769 AAAAGTGCAAAATGGAACTTTTCAT 57.371 28.000 6.26 0.00 0.00 2.57
86 87 6.849588 AAGTGCAAAATGGAACTTTTCATC 57.150 33.333 0.00 0.00 0.00 2.92
87 88 5.916318 AGTGCAAAATGGAACTTTTCATCA 58.084 33.333 0.00 0.00 0.00 3.07
88 89 6.347696 AGTGCAAAATGGAACTTTTCATCAA 58.652 32.000 0.00 0.00 0.00 2.57
89 90 6.822676 AGTGCAAAATGGAACTTTTCATCAAA 59.177 30.769 0.00 0.00 0.00 2.69
90 91 7.499895 AGTGCAAAATGGAACTTTTCATCAAAT 59.500 29.630 0.00 0.00 0.00 2.32
91 92 8.130469 GTGCAAAATGGAACTTTTCATCAAATT 58.870 29.630 0.00 0.00 0.00 1.82
92 93 8.344098 TGCAAAATGGAACTTTTCATCAAATTC 58.656 29.630 0.00 0.00 0.00 2.17
93 94 7.804600 GCAAAATGGAACTTTTCATCAAATTCC 59.195 33.333 0.00 0.00 35.11 3.01
94 95 7.656707 AAATGGAACTTTTCATCAAATTCCG 57.343 32.000 0.00 0.00 36.16 4.30
95 96 6.588719 ATGGAACTTTTCATCAAATTCCGA 57.411 33.333 0.00 0.00 36.16 4.55
96 97 6.398234 TGGAACTTTTCATCAAATTCCGAA 57.602 33.333 0.00 0.00 36.16 4.30
97 98 6.212955 TGGAACTTTTCATCAAATTCCGAAC 58.787 36.000 0.00 0.00 36.16 3.95
98 99 6.183360 TGGAACTTTTCATCAAATTCCGAACA 60.183 34.615 0.00 0.00 36.16 3.18
99 100 6.699642 GGAACTTTTCATCAAATTCCGAACAA 59.300 34.615 0.00 0.00 29.72 2.83
100 101 7.223777 GGAACTTTTCATCAAATTCCGAACAAA 59.776 33.333 0.00 0.00 29.72 2.83
101 102 8.485976 AACTTTTCATCAAATTCCGAACAAAA 57.514 26.923 0.00 0.00 0.00 2.44
102 103 8.485976 ACTTTTCATCAAATTCCGAACAAAAA 57.514 26.923 0.00 0.00 0.00 1.94
122 123 6.735678 AAAAACTGGAACCACAAACATTTC 57.264 33.333 0.00 0.00 0.00 2.17
123 124 5.675684 AAACTGGAACCACAAACATTTCT 57.324 34.783 0.00 0.00 0.00 2.52
124 125 6.783708 AAACTGGAACCACAAACATTTCTA 57.216 33.333 0.00 0.00 0.00 2.10
125 126 6.783708 AACTGGAACCACAAACATTTCTAA 57.216 33.333 0.00 0.00 0.00 2.10
126 127 6.783708 ACTGGAACCACAAACATTTCTAAA 57.216 33.333 0.00 0.00 0.00 1.85
127 128 7.176589 ACTGGAACCACAAACATTTCTAAAA 57.823 32.000 0.00 0.00 0.00 1.52
128 129 7.791029 ACTGGAACCACAAACATTTCTAAAAT 58.209 30.769 0.00 0.00 0.00 1.82
129 130 8.264347 ACTGGAACCACAAACATTTCTAAAATT 58.736 29.630 0.00 0.00 0.00 1.82
130 131 9.108284 CTGGAACCACAAACATTTCTAAAATTT 57.892 29.630 0.00 0.00 0.00 1.82
184 185 9.840427 TTTTTGAATTGCCGACAAATTTTAAAA 57.160 22.222 2.51 2.51 39.77 1.52
185 186 9.495754 TTTTGAATTGCCGACAAATTTTAAAAG 57.504 25.926 6.79 0.00 39.77 2.27
186 187 8.425577 TTGAATTGCCGACAAATTTTAAAAGA 57.574 26.923 6.79 0.00 39.77 2.52
187 188 8.425577 TGAATTGCCGACAAATTTTAAAAGAA 57.574 26.923 6.79 0.00 39.77 2.52
188 189 9.050601 TGAATTGCCGACAAATTTTAAAAGAAT 57.949 25.926 6.79 0.00 39.77 2.40
189 190 9.316859 GAATTGCCGACAAATTTTAAAAGAATG 57.683 29.630 6.79 7.62 39.77 2.67
190 191 7.778470 TTGCCGACAAATTTTAAAAGAATGT 57.222 28.000 6.79 10.48 31.21 2.71
191 192 7.171447 TGCCGACAAATTTTAAAAGAATGTG 57.829 32.000 16.25 5.15 0.00 3.21
192 193 6.980978 TGCCGACAAATTTTAAAAGAATGTGA 59.019 30.769 16.25 1.61 0.00 3.58
193 194 7.492669 TGCCGACAAATTTTAAAAGAATGTGAA 59.507 29.630 16.25 1.39 0.00 3.18
194 195 7.792048 GCCGACAAATTTTAAAAGAATGTGAAC 59.208 33.333 16.25 6.03 0.00 3.18
195 196 9.030301 CCGACAAATTTTAAAAGAATGTGAACT 57.970 29.630 16.25 0.00 0.00 3.01
230 231 9.984190 TTTGTGAACAACTTTTTAAAACTAGGT 57.016 25.926 0.00 0.00 35.28 3.08
248 249 9.981114 AAACTAGGTACATTTTTGGAATTCTTG 57.019 29.630 5.23 0.00 0.00 3.02
249 250 8.706322 ACTAGGTACATTTTTGGAATTCTTGT 57.294 30.769 5.23 3.35 0.00 3.16
250 251 8.576442 ACTAGGTACATTTTTGGAATTCTTGTG 58.424 33.333 5.23 0.00 0.00 3.33
251 252 6.223120 AGGTACATTTTTGGAATTCTTGTGC 58.777 36.000 5.23 4.20 0.00 4.57
252 253 5.988561 GGTACATTTTTGGAATTCTTGTGCA 59.011 36.000 5.23 0.00 0.00 4.57
253 254 6.650390 GGTACATTTTTGGAATTCTTGTGCAT 59.350 34.615 5.23 0.00 0.00 3.96
254 255 6.548441 ACATTTTTGGAATTCTTGTGCATG 57.452 33.333 5.23 4.37 0.00 4.06
255 256 6.056884 ACATTTTTGGAATTCTTGTGCATGT 58.943 32.000 5.23 4.95 0.00 3.21
256 257 6.543100 ACATTTTTGGAATTCTTGTGCATGTT 59.457 30.769 5.23 0.00 0.00 2.71
257 258 6.998968 TTTTTGGAATTCTTGTGCATGTTT 57.001 29.167 5.23 0.00 0.00 2.83
258 259 6.998968 TTTTGGAATTCTTGTGCATGTTTT 57.001 29.167 5.23 0.00 0.00 2.43
259 260 5.987777 TTGGAATTCTTGTGCATGTTTTG 57.012 34.783 5.23 0.00 0.00 2.44
260 261 5.273674 TGGAATTCTTGTGCATGTTTTGA 57.726 34.783 5.23 0.00 0.00 2.69
261 262 5.668471 TGGAATTCTTGTGCATGTTTTGAA 58.332 33.333 5.23 0.00 0.00 2.69
262 263 6.289834 TGGAATTCTTGTGCATGTTTTGAAT 58.710 32.000 5.23 0.00 0.00 2.57
263 264 6.766944 TGGAATTCTTGTGCATGTTTTGAATT 59.233 30.769 5.23 12.16 36.00 2.17
264 265 7.282675 TGGAATTCTTGTGCATGTTTTGAATTT 59.717 29.630 5.23 3.38 34.25 1.82
265 266 7.588488 GGAATTCTTGTGCATGTTTTGAATTTG 59.412 33.333 5.23 0.00 34.25 2.32
266 267 6.981762 TTCTTGTGCATGTTTTGAATTTGT 57.018 29.167 0.00 0.00 0.00 2.83
267 268 6.347270 TCTTGTGCATGTTTTGAATTTGTG 57.653 33.333 0.00 0.00 0.00 3.33
268 269 6.104665 TCTTGTGCATGTTTTGAATTTGTGA 58.895 32.000 0.00 0.00 0.00 3.58
269 270 6.592994 TCTTGTGCATGTTTTGAATTTGTGAA 59.407 30.769 0.00 0.00 0.00 3.18
270 271 6.104439 TGTGCATGTTTTGAATTTGTGAAC 57.896 33.333 0.00 0.00 0.00 3.18
271 272 5.640783 TGTGCATGTTTTGAATTTGTGAACA 59.359 32.000 0.00 0.00 35.04 3.18
272 273 6.148315 TGTGCATGTTTTGAATTTGTGAACAA 59.852 30.769 0.00 0.00 34.34 2.83
286 287 7.747155 TTTGTGAACAAAATCTATAACGGGA 57.253 32.000 6.15 0.00 42.26 5.14
287 288 7.747155 TTGTGAACAAAATCTATAACGGGAA 57.253 32.000 0.00 0.00 32.11 3.97
288 289 7.136289 TGTGAACAAAATCTATAACGGGAAC 57.864 36.000 0.00 0.00 0.00 3.62
289 290 6.711194 TGTGAACAAAATCTATAACGGGAACA 59.289 34.615 0.00 0.00 0.00 3.18
290 291 7.094975 TGTGAACAAAATCTATAACGGGAACAG 60.095 37.037 0.00 0.00 0.00 3.16
291 292 6.938030 TGAACAAAATCTATAACGGGAACAGT 59.062 34.615 0.00 0.00 0.00 3.55
292 293 7.446013 TGAACAAAATCTATAACGGGAACAGTT 59.554 33.333 0.00 0.00 35.75 3.16
293 294 7.754851 ACAAAATCTATAACGGGAACAGTTT 57.245 32.000 0.00 0.00 33.42 2.66
294 295 8.173542 ACAAAATCTATAACGGGAACAGTTTT 57.826 30.769 0.00 0.00 33.42 2.43
295 296 8.635328 ACAAAATCTATAACGGGAACAGTTTTT 58.365 29.630 0.00 0.00 33.42 1.94
339 340 8.614469 TTTTTGAAACCTGAACATTGTTTTCT 57.386 26.923 3.08 0.00 32.67 2.52
340 341 9.712305 TTTTTGAAACCTGAACATTGTTTTCTA 57.288 25.926 3.08 0.00 32.67 2.10
341 342 9.712305 TTTTGAAACCTGAACATTGTTTTCTAA 57.288 25.926 3.08 4.09 32.67 2.10
342 343 9.712305 TTTGAAACCTGAACATTGTTTTCTAAA 57.288 25.926 3.08 4.67 32.67 1.85
343 344 8.925161 TGAAACCTGAACATTGTTTTCTAAAG 57.075 30.769 3.08 0.00 32.67 1.85
344 345 8.527810 TGAAACCTGAACATTGTTTTCTAAAGT 58.472 29.630 3.08 0.00 32.67 2.66
345 346 8.926715 AAACCTGAACATTGTTTTCTAAAGTC 57.073 30.769 3.08 0.00 0.00 3.01
346 347 7.881775 ACCTGAACATTGTTTTCTAAAGTCT 57.118 32.000 3.08 0.00 0.00 3.24
347 348 7.707104 ACCTGAACATTGTTTTCTAAAGTCTG 58.293 34.615 3.08 0.00 0.00 3.51
348 349 7.141363 CCTGAACATTGTTTTCTAAAGTCTGG 58.859 38.462 3.08 0.00 0.00 3.86
349 350 7.201821 CCTGAACATTGTTTTCTAAAGTCTGGT 60.202 37.037 3.08 0.00 0.00 4.00
350 351 7.703328 TGAACATTGTTTTCTAAAGTCTGGTC 58.297 34.615 3.08 0.00 0.00 4.02
351 352 7.338196 TGAACATTGTTTTCTAAAGTCTGGTCA 59.662 33.333 3.08 0.00 0.00 4.02
352 353 7.823745 ACATTGTTTTCTAAAGTCTGGTCAT 57.176 32.000 0.00 0.00 0.00 3.06
353 354 8.918202 ACATTGTTTTCTAAAGTCTGGTCATA 57.082 30.769 0.00 0.00 0.00 2.15
354 355 9.520515 ACATTGTTTTCTAAAGTCTGGTCATAT 57.479 29.630 0.00 0.00 0.00 1.78
366 367 8.567285 AAGTCTGGTCATATTTTGTTAAGAGG 57.433 34.615 0.00 0.00 0.00 3.69
367 368 7.918076 AGTCTGGTCATATTTTGTTAAGAGGA 58.082 34.615 0.00 0.00 0.00 3.71
368 369 8.383175 AGTCTGGTCATATTTTGTTAAGAGGAA 58.617 33.333 0.00 0.00 0.00 3.36
369 370 8.451748 GTCTGGTCATATTTTGTTAAGAGGAAC 58.548 37.037 0.00 0.00 0.00 3.62
370 371 8.160765 TCTGGTCATATTTTGTTAAGAGGAACA 58.839 33.333 0.00 0.00 37.54 3.18
371 372 8.877864 TGGTCATATTTTGTTAAGAGGAACAT 57.122 30.769 0.00 0.00 39.04 2.71
372 373 9.308000 TGGTCATATTTTGTTAAGAGGAACATT 57.692 29.630 0.00 0.00 39.04 2.71
481 482 9.703892 TGAAAAAGAAAAACAGAAACAGATTCA 57.296 25.926 0.00 0.00 40.72 2.57
482 483 9.958285 GAAAAAGAAAAACAGAAACAGATTCAC 57.042 29.630 0.00 0.00 40.72 3.18
483 484 7.740519 AAAGAAAAACAGAAACAGATTCACG 57.259 32.000 0.00 0.00 40.72 4.35
484 485 6.677781 AGAAAAACAGAAACAGATTCACGA 57.322 33.333 0.00 0.00 40.72 4.35
485 486 7.083875 AGAAAAACAGAAACAGATTCACGAA 57.916 32.000 0.00 0.00 40.72 3.85
486 487 7.535139 AGAAAAACAGAAACAGATTCACGAAA 58.465 30.769 0.00 0.00 40.72 3.46
487 488 8.026607 AGAAAAACAGAAACAGATTCACGAAAA 58.973 29.630 0.00 0.00 40.72 2.29
488 489 8.527567 AAAAACAGAAACAGATTCACGAAAAA 57.472 26.923 0.00 0.00 40.72 1.94
534 535 8.731275 AAACCAAAATAAAAAGAGAAACCAGG 57.269 30.769 0.00 0.00 0.00 4.45
535 536 7.669089 ACCAAAATAAAAAGAGAAACCAGGA 57.331 32.000 0.00 0.00 0.00 3.86
536 537 8.084985 ACCAAAATAAAAAGAGAAACCAGGAA 57.915 30.769 0.00 0.00 0.00 3.36
537 538 8.544622 ACCAAAATAAAAAGAGAAACCAGGAAA 58.455 29.630 0.00 0.00 0.00 3.13
538 539 9.045223 CCAAAATAAAAAGAGAAACCAGGAAAG 57.955 33.333 0.00 0.00 0.00 2.62
539 540 9.816354 CAAAATAAAAAGAGAAACCAGGAAAGA 57.184 29.630 0.00 0.00 0.00 2.52
541 542 9.817809 AAATAAAAAGAGAAACCAGGAAAGAAC 57.182 29.630 0.00 0.00 0.00 3.01
542 543 5.854010 AAAAGAGAAACCAGGAAAGAACC 57.146 39.130 0.00 0.00 0.00 3.62
543 544 3.127425 AGAGAAACCAGGAAAGAACCG 57.873 47.619 0.00 0.00 34.73 4.44
544 545 2.152016 GAGAAACCAGGAAAGAACCGG 58.848 52.381 0.00 0.00 34.73 5.28
545 546 1.493446 AGAAACCAGGAAAGAACCGGT 59.507 47.619 0.00 0.00 38.02 5.28
546 547 2.092049 AGAAACCAGGAAAGAACCGGTT 60.092 45.455 22.50 22.50 43.14 4.44
547 548 2.447408 AACCAGGAAAGAACCGGTTT 57.553 45.000 23.22 5.28 40.75 3.27
548 549 2.447408 ACCAGGAAAGAACCGGTTTT 57.553 45.000 23.22 13.91 34.87 2.43
549 550 2.028876 ACCAGGAAAGAACCGGTTTTG 58.971 47.619 23.22 12.49 34.87 2.44
550 551 1.339929 CCAGGAAAGAACCGGTTTTGG 59.660 52.381 23.22 17.09 34.73 3.28
551 552 2.303175 CAGGAAAGAACCGGTTTTGGA 58.697 47.619 23.22 0.00 34.73 3.53
552 553 2.691011 CAGGAAAGAACCGGTTTTGGAA 59.309 45.455 23.22 0.00 34.73 3.53
553 554 2.691526 AGGAAAGAACCGGTTTTGGAAC 59.308 45.455 23.22 7.36 34.96 3.62
566 567 5.363979 GTTTTGGAACCTTCTAGAAGCTG 57.636 43.478 24.58 15.38 37.11 4.24
567 568 2.770164 TGGAACCTTCTAGAAGCTGC 57.230 50.000 24.58 18.54 37.11 5.25
568 569 1.066858 TGGAACCTTCTAGAAGCTGCG 60.067 52.381 24.58 14.40 37.11 5.18
569 570 1.204941 GGAACCTTCTAGAAGCTGCGA 59.795 52.381 24.58 0.00 37.11 5.10
570 571 2.535331 GAACCTTCTAGAAGCTGCGAG 58.465 52.381 24.58 13.42 37.11 5.03
571 572 1.840737 ACCTTCTAGAAGCTGCGAGA 58.159 50.000 24.58 0.00 37.11 4.04
572 573 2.171840 ACCTTCTAGAAGCTGCGAGAA 58.828 47.619 24.58 15.70 37.11 2.87
573 574 2.165437 ACCTTCTAGAAGCTGCGAGAAG 59.835 50.000 28.88 28.88 43.17 2.85
574 575 2.808244 CTTCTAGAAGCTGCGAGAAGG 58.192 52.381 28.40 14.93 41.22 3.46
575 576 1.840737 TCTAGAAGCTGCGAGAAGGT 58.159 50.000 1.30 0.00 0.00 3.50
576 577 2.171840 TCTAGAAGCTGCGAGAAGGTT 58.828 47.619 1.30 0.00 40.47 3.50
579 580 2.919971 AAGCTGCGAGAAGGTTCAC 58.080 52.632 0.00 0.00 32.55 3.18
580 581 0.106708 AAGCTGCGAGAAGGTTCACA 59.893 50.000 0.00 0.00 32.55 3.58
581 582 0.320247 AGCTGCGAGAAGGTTCACAG 60.320 55.000 0.00 0.00 0.00 3.66
582 583 0.319900 GCTGCGAGAAGGTTCACAGA 60.320 55.000 10.08 0.00 30.95 3.41
583 584 1.674221 GCTGCGAGAAGGTTCACAGAT 60.674 52.381 10.08 0.00 30.95 2.90
584 585 1.998315 CTGCGAGAAGGTTCACAGATG 59.002 52.381 0.00 0.00 30.95 2.90
585 586 1.338105 TGCGAGAAGGTTCACAGATGG 60.338 52.381 0.00 0.00 0.00 3.51
586 587 2.009042 GCGAGAAGGTTCACAGATGGG 61.009 57.143 0.00 0.00 0.00 4.00
587 588 1.743996 GAGAAGGTTCACAGATGGGC 58.256 55.000 0.00 0.00 0.00 5.36
588 589 0.329596 AGAAGGTTCACAGATGGGCC 59.670 55.000 0.00 0.00 0.00 5.80
589 590 1.002134 AAGGTTCACAGATGGGCCG 60.002 57.895 0.00 0.00 0.00 6.13
590 591 2.438434 GGTTCACAGATGGGCCGG 60.438 66.667 0.00 0.00 0.00 6.13
591 592 3.134127 GTTCACAGATGGGCCGGC 61.134 66.667 21.18 21.18 0.00 6.13
592 593 4.424711 TTCACAGATGGGCCGGCC 62.425 66.667 38.57 38.57 0.00 6.13
603 604 4.562425 GCCGGCCCATTGGATCGA 62.562 66.667 18.11 0.00 33.49 3.59
604 605 2.431683 CCGGCCCATTGGATCGAT 59.568 61.111 15.77 0.00 33.49 3.59
605 606 1.676968 CCGGCCCATTGGATCGATA 59.323 57.895 15.77 0.00 33.49 2.92
606 607 0.673644 CCGGCCCATTGGATCGATAC 60.674 60.000 15.77 0.00 33.49 2.24
607 608 0.673644 CGGCCCATTGGATCGATACC 60.674 60.000 4.85 6.08 33.49 2.73
608 609 0.400213 GGCCCATTGGATCGATACCA 59.600 55.000 4.85 8.72 35.47 3.25
609 610 1.611673 GGCCCATTGGATCGATACCAG 60.612 57.143 4.85 1.43 38.70 4.00
610 611 1.072331 GCCCATTGGATCGATACCAGT 59.928 52.381 4.85 5.70 38.70 4.00
611 612 2.771089 CCCATTGGATCGATACCAGTG 58.229 52.381 21.65 21.65 42.25 3.66
612 613 2.104792 CCCATTGGATCGATACCAGTGT 59.895 50.000 24.14 11.96 41.44 3.55
613 614 3.133691 CCATTGGATCGATACCAGTGTG 58.866 50.000 24.14 18.47 41.44 3.82
614 615 2.309528 TTGGATCGATACCAGTGTGC 57.690 50.000 4.85 0.00 38.70 4.57
615 616 0.102300 TGGATCGATACCAGTGTGCG 59.898 55.000 4.85 0.00 33.22 5.34
616 617 0.597637 GGATCGATACCAGTGTGCGG 60.598 60.000 0.00 0.00 0.00 5.69
617 618 0.102481 GATCGATACCAGTGTGCGGT 59.898 55.000 0.00 0.00 40.73 5.68
618 619 1.335810 GATCGATACCAGTGTGCGGTA 59.664 52.381 0.00 0.00 43.06 4.02
619 620 0.452987 TCGATACCAGTGTGCGGTAC 59.547 55.000 0.00 0.00 41.73 3.34
634 635 1.073964 GGTACGTCTTTCCGGAAAGC 58.926 55.000 40.31 33.27 45.48 3.51
635 636 1.606224 GGTACGTCTTTCCGGAAAGCA 60.606 52.381 40.31 29.18 45.48 3.91
636 637 1.725164 GTACGTCTTTCCGGAAAGCAG 59.275 52.381 40.31 35.45 45.48 4.24
637 638 1.228657 ACGTCTTTCCGGAAAGCAGC 61.229 55.000 40.31 31.08 45.48 5.25
638 639 1.497722 GTCTTTCCGGAAAGCAGCG 59.502 57.895 40.31 24.65 45.48 5.18
639 640 2.176792 CTTTCCGGAAAGCAGCGC 59.823 61.111 36.88 0.00 40.94 5.92
640 641 3.651480 CTTTCCGGAAAGCAGCGCG 62.651 63.158 36.88 17.95 40.94 6.86
644 645 4.152625 CGGAAAGCAGCGCGGAAG 62.153 66.667 13.03 0.00 0.00 3.46
645 646 2.742372 GGAAAGCAGCGCGGAAGA 60.742 61.111 13.03 0.00 0.00 2.87
646 647 2.325082 GGAAAGCAGCGCGGAAGAA 61.325 57.895 13.03 0.00 0.00 2.52
647 648 1.574428 GAAAGCAGCGCGGAAGAAA 59.426 52.632 13.03 0.00 0.00 2.52
648 649 0.040425 GAAAGCAGCGCGGAAGAAAA 60.040 50.000 13.03 0.00 0.00 2.29
649 650 0.383949 AAAGCAGCGCGGAAGAAAAA 59.616 45.000 13.03 0.00 0.00 1.94
669 670 2.882927 AAAAAGCGAACAAGGGGAAC 57.117 45.000 0.00 0.00 0.00 3.62
670 671 2.067365 AAAAGCGAACAAGGGGAACT 57.933 45.000 0.00 0.00 0.00 3.01
671 672 2.067365 AAAGCGAACAAGGGGAACTT 57.933 45.000 0.00 0.00 41.00 2.66
681 682 3.653835 AAGGGGAACTTGAAGCTATCC 57.346 47.619 0.00 0.00 38.21 2.59
682 683 2.852130 AGGGGAACTTGAAGCTATCCT 58.148 47.619 10.74 3.01 0.00 3.24
683 684 4.008916 AGGGGAACTTGAAGCTATCCTA 57.991 45.455 10.74 0.00 0.00 2.94
684 685 3.712218 AGGGGAACTTGAAGCTATCCTAC 59.288 47.826 10.74 6.07 0.00 3.18
685 686 3.492829 GGGGAACTTGAAGCTATCCTACG 60.493 52.174 10.74 0.00 0.00 3.51
686 687 3.492829 GGGAACTTGAAGCTATCCTACGG 60.493 52.174 10.74 0.00 0.00 4.02
687 688 3.492829 GGAACTTGAAGCTATCCTACGGG 60.493 52.174 5.36 0.00 0.00 5.28
688 689 1.413077 ACTTGAAGCTATCCTACGGGC 59.587 52.381 0.00 0.00 0.00 6.13
689 690 0.756903 TTGAAGCTATCCTACGGGCC 59.243 55.000 0.00 0.00 0.00 5.80
690 691 1.119574 TGAAGCTATCCTACGGGCCC 61.120 60.000 13.57 13.57 0.00 5.80
691 692 1.074775 AAGCTATCCTACGGGCCCA 60.075 57.895 24.92 0.53 0.00 5.36
692 693 0.693092 AAGCTATCCTACGGGCCCAA 60.693 55.000 24.92 8.33 0.00 4.12
693 694 0.473886 AGCTATCCTACGGGCCCAAT 60.474 55.000 24.92 12.25 0.00 3.16
694 695 1.203262 AGCTATCCTACGGGCCCAATA 60.203 52.381 24.92 12.82 0.00 1.90
695 696 1.066358 GCTATCCTACGGGCCCAATAC 60.066 57.143 24.92 0.00 0.00 1.89
696 697 2.253610 CTATCCTACGGGCCCAATACA 58.746 52.381 24.92 1.68 0.00 2.29
697 698 1.513858 ATCCTACGGGCCCAATACAA 58.486 50.000 24.92 1.86 0.00 2.41
698 699 0.834612 TCCTACGGGCCCAATACAAG 59.165 55.000 24.92 5.71 0.00 3.16
699 700 0.544697 CCTACGGGCCCAATACAAGT 59.455 55.000 24.92 12.26 0.00 3.16
700 701 1.764134 CCTACGGGCCCAATACAAGTA 59.236 52.381 24.92 12.79 0.00 2.24
701 702 2.224209 CCTACGGGCCCAATACAAGTAG 60.224 54.545 24.92 21.13 0.00 2.57
702 703 0.544697 ACGGGCCCAATACAAGTAGG 59.455 55.000 24.92 2.51 0.00 3.18
703 704 0.544697 CGGGCCCAATACAAGTAGGT 59.455 55.000 24.92 0.00 0.00 3.08
704 705 1.064979 CGGGCCCAATACAAGTAGGTT 60.065 52.381 24.92 0.00 0.00 3.50
705 706 2.619590 CGGGCCCAATACAAGTAGGTTT 60.620 50.000 24.92 0.00 0.00 3.27
706 707 3.021695 GGGCCCAATACAAGTAGGTTTC 58.978 50.000 19.95 0.00 0.00 2.78
707 708 2.681344 GGCCCAATACAAGTAGGTTTCG 59.319 50.000 0.00 0.00 0.00 3.46
708 709 2.096980 GCCCAATACAAGTAGGTTTCGC 59.903 50.000 0.00 0.00 0.00 4.70
709 710 3.606687 CCCAATACAAGTAGGTTTCGCT 58.393 45.455 0.00 0.00 0.00 4.93
710 711 3.374058 CCCAATACAAGTAGGTTTCGCTG 59.626 47.826 0.00 0.00 0.00 5.18
711 712 4.000988 CCAATACAAGTAGGTTTCGCTGT 58.999 43.478 0.00 0.00 0.00 4.40
712 713 4.142902 CCAATACAAGTAGGTTTCGCTGTG 60.143 45.833 0.00 0.00 0.00 3.66
713 714 1.878953 ACAAGTAGGTTTCGCTGTGG 58.121 50.000 0.00 0.00 0.00 4.17
714 715 1.156736 CAAGTAGGTTTCGCTGTGGG 58.843 55.000 0.00 0.00 0.00 4.61
715 716 0.763035 AAGTAGGTTTCGCTGTGGGT 59.237 50.000 0.00 0.00 0.00 4.51
716 717 0.034896 AGTAGGTTTCGCTGTGGGTG 59.965 55.000 0.00 0.00 0.00 4.61
717 718 0.034337 GTAGGTTTCGCTGTGGGTGA 59.966 55.000 0.00 0.00 0.00 4.02
718 719 0.320374 TAGGTTTCGCTGTGGGTGAG 59.680 55.000 0.00 0.00 35.73 3.51
719 720 2.617274 GGTTTCGCTGTGGGTGAGC 61.617 63.158 0.00 0.00 35.73 4.26
720 721 2.281484 TTTCGCTGTGGGTGAGCC 60.281 61.111 0.00 0.00 35.73 4.70
721 722 3.113514 TTTCGCTGTGGGTGAGCCA 62.114 57.895 0.00 0.00 35.73 4.75
722 723 2.410322 TTTCGCTGTGGGTGAGCCAT 62.410 55.000 6.66 0.00 35.73 4.40
730 731 1.293179 GGGTGAGCCATTGTTTGCC 59.707 57.895 0.00 0.00 36.17 4.52
875 877 9.809395 TGCCTATATATACATCTAGTACATCCC 57.191 37.037 0.00 0.00 35.05 3.85
904 906 1.264557 CCGCTCGTCTAGACATCGATT 59.735 52.381 22.37 0.00 33.26 3.34
916 918 4.324471 TCGATTCCCCGTCGAGAA 57.676 55.556 0.00 0.00 42.57 2.87
954 956 3.551915 GCCTACGCGCGTTTCTCC 61.552 66.667 42.10 20.37 0.00 3.71
1004 1006 2.838736 ACAACGTTCTGAGCTCATGTT 58.161 42.857 18.63 15.96 0.00 2.71
1010 1012 0.390340 TCTGAGCTCATGTTGACGGC 60.390 55.000 18.63 0.00 0.00 5.68
1404 1433 0.901124 AGCACCTCTACAAGCCTCTG 59.099 55.000 0.00 0.00 0.00 3.35
1419 1448 2.201436 CTCTGTCGGAGGACGTGGTG 62.201 65.000 0.00 0.00 46.49 4.17
1548 1577 1.254975 TGAAGATGGGCGACTTCGGA 61.255 55.000 0.02 0.00 43.46 4.55
1745 1774 4.864334 CACGGAGGAGGGCATGGC 62.864 72.222 11.56 11.56 0.00 4.40
1795 1824 2.190578 CCTCCACGGGGAAGATGC 59.809 66.667 8.34 0.00 44.38 3.91
1980 2015 5.068234 AGACCGATAGACGAAATGTTCAA 57.932 39.130 0.00 0.00 45.77 2.69
2016 2059 5.091261 AGTGTCCCAGAGTTAGCTTAATG 57.909 43.478 0.00 0.00 0.00 1.90
2075 2335 8.528917 AAAAGGTTTGGATAAATTTAAGCGTC 57.471 30.769 1.21 0.00 0.00 5.19
2127 2387 3.364441 TGCTGTTGTGCGCATCCC 61.364 61.111 15.91 0.09 35.36 3.85
2128 2388 3.364441 GCTGTTGTGCGCATCCCA 61.364 61.111 15.91 3.64 0.00 4.37
2197 2487 6.801367 CAAATATGCTGCAATGTACAGAAC 57.199 37.500 6.36 0.00 37.32 3.01
2306 2711 5.560966 TTTTCCTTGCAATATTCGAGTCC 57.439 39.130 0.00 0.00 0.00 3.85
2324 2729 1.347707 TCCTCGGTGACTCAAATGCTT 59.652 47.619 0.00 0.00 0.00 3.91
2328 2733 2.948979 TCGGTGACTCAAATGCTTTGTT 59.051 40.909 8.01 0.00 41.36 2.83
2337 2742 5.126061 ACTCAAATGCTTTGTTCAAGTCACT 59.874 36.000 8.01 0.00 41.36 3.41
2339 2744 5.806502 TCAAATGCTTTGTTCAAGTCACTTG 59.193 36.000 11.69 11.69 40.64 3.16
2340 2745 4.989279 ATGCTTTGTTCAAGTCACTTGT 57.011 36.364 17.27 0.00 41.66 3.16
2341 2746 4.355543 TGCTTTGTTCAAGTCACTTGTC 57.644 40.909 17.27 11.91 41.66 3.18
2342 2747 3.755905 TGCTTTGTTCAAGTCACTTGTCA 59.244 39.130 17.27 14.15 41.66 3.58
2343 2748 4.398988 TGCTTTGTTCAAGTCACTTGTCAT 59.601 37.500 17.27 0.00 41.66 3.06
2344 2749 4.736793 GCTTTGTTCAAGTCACTTGTCATG 59.263 41.667 17.27 13.10 41.66 3.07
2345 2750 4.898829 TTGTTCAAGTCACTTGTCATGG 57.101 40.909 17.27 0.00 41.66 3.66
2346 2751 3.884895 TGTTCAAGTCACTTGTCATGGT 58.115 40.909 17.27 0.00 41.66 3.55
2347 2752 4.269183 TGTTCAAGTCACTTGTCATGGTT 58.731 39.130 17.27 0.00 41.66 3.67
2348 2753 4.096231 TGTTCAAGTCACTTGTCATGGTTG 59.904 41.667 17.27 0.00 41.66 3.77
2349 2754 2.618241 TCAAGTCACTTGTCATGGTTGC 59.382 45.455 17.27 0.00 41.66 4.17
2350 2755 2.620115 CAAGTCACTTGTCATGGTTGCT 59.380 45.455 9.61 0.00 36.79 3.91
2351 2756 2.936202 AGTCACTTGTCATGGTTGCTT 58.064 42.857 0.00 0.00 0.00 3.91
2352 2757 3.290710 AGTCACTTGTCATGGTTGCTTT 58.709 40.909 0.00 0.00 0.00 3.51
2353 2758 3.701040 AGTCACTTGTCATGGTTGCTTTT 59.299 39.130 0.00 0.00 0.00 2.27
2354 2759 4.160252 AGTCACTTGTCATGGTTGCTTTTT 59.840 37.500 0.00 0.00 0.00 1.94
2378 2783 4.349636 TCCCCACAGTTAAGAGTGATTGAA 59.650 41.667 8.41 0.00 37.97 2.69
2379 2784 4.697352 CCCCACAGTTAAGAGTGATTGAAG 59.303 45.833 8.41 0.00 37.97 3.02
2381 2786 4.999950 CCACAGTTAAGAGTGATTGAAGCT 59.000 41.667 8.41 0.00 37.97 3.74
2383 2788 6.348050 CCACAGTTAAGAGTGATTGAAGCTTC 60.348 42.308 19.89 19.89 37.97 3.86
2384 2789 5.406780 ACAGTTAAGAGTGATTGAAGCTTCG 59.593 40.000 21.11 3.90 0.00 3.79
2386 2791 5.866633 AGTTAAGAGTGATTGAAGCTTCGAG 59.133 40.000 20.82 0.00 0.00 4.04
2387 2792 3.244033 AGAGTGATTGAAGCTTCGAGG 57.756 47.619 20.82 0.00 0.00 4.63
2388 2793 2.093764 AGAGTGATTGAAGCTTCGAGGG 60.094 50.000 20.82 0.00 0.00 4.30
2412 3060 4.462483 TGGCATGTCAAAAATACTCCCTTC 59.538 41.667 0.00 0.00 0.00 3.46
2418 3066 3.258872 TCAAAAATACTCCCTTCGTCCGA 59.741 43.478 0.00 0.00 0.00 4.55
2440 3088 8.181573 TCCGAAATTATTTGTCACAGAAATAGC 58.818 33.333 0.00 0.00 29.28 2.97
2547 9084 0.726827 AGAATGCACATACAACGCCG 59.273 50.000 0.00 0.00 0.00 6.46
2555 9092 2.222213 CACATACAACGCCGTGAAGAAA 59.778 45.455 0.00 0.00 0.00 2.52
2560 9097 2.420722 ACAACGCCGTGAAGAAAGAAAA 59.579 40.909 0.00 0.00 0.00 2.29
2561 9098 2.750301 ACGCCGTGAAGAAAGAAAAC 57.250 45.000 0.00 0.00 0.00 2.43
2568 9109 4.037690 CGTGAAGAAAGAAAACCAAGCAG 58.962 43.478 0.00 0.00 0.00 4.24
2606 9147 1.617755 AAGCGCGACAACGATGTGAG 61.618 55.000 12.10 0.00 40.74 3.51
2607 9148 2.391821 CGCGACAACGATGTGAGC 59.608 61.111 1.86 7.87 40.74 4.26
2608 9149 2.371923 CGCGACAACGATGTGAGCA 61.372 57.895 18.21 0.00 40.74 4.26
2609 9150 1.130613 GCGACAACGATGTGAGCAC 59.869 57.895 1.86 0.00 40.74 4.40
2610 9151 1.781555 CGACAACGATGTGAGCACC 59.218 57.895 1.86 0.00 40.74 5.01
2611 9152 0.943835 CGACAACGATGTGAGCACCA 60.944 55.000 1.86 0.00 40.74 4.17
2612 9153 1.442769 GACAACGATGTGAGCACCAT 58.557 50.000 1.86 0.00 40.74 3.55
2613 9154 1.806542 GACAACGATGTGAGCACCATT 59.193 47.619 1.86 0.00 40.74 3.16
2614 9155 1.536766 ACAACGATGTGAGCACCATTG 59.463 47.619 0.00 1.02 38.69 2.82
2632 9173 6.644181 CACCATTGCACACACAATATTTACAA 59.356 34.615 0.00 0.00 38.19 2.41
2634 9175 7.384660 ACCATTGCACACACAATATTTACAAAG 59.615 33.333 0.00 0.00 38.19 2.77
2635 9176 7.384660 CCATTGCACACACAATATTTACAAAGT 59.615 33.333 0.00 0.00 38.19 2.66
2636 9177 7.922505 TTGCACACACAATATTTACAAAGTC 57.077 32.000 0.00 0.00 0.00 3.01
2637 9178 7.270757 TGCACACACAATATTTACAAAGTCT 57.729 32.000 0.00 0.00 0.00 3.24
2639 9180 7.860373 TGCACACACAATATTTACAAAGTCTTC 59.140 33.333 0.00 0.00 0.00 2.87
2640 9181 7.059488 GCACACACAATATTTACAAAGTCTTCG 59.941 37.037 0.00 0.00 0.00 3.79
2717 9262 5.930837 AGACAAAAAGAAACCATTGGACA 57.069 34.783 10.37 0.00 0.00 4.02
2721 9266 7.828717 AGACAAAAAGAAACCATTGGACAAAAT 59.171 29.630 10.37 0.00 0.00 1.82
2729 9274 7.495606 AGAAACCATTGGACAAAATTGTTCTTC 59.504 33.333 10.37 1.22 42.43 2.87
2731 9276 5.068460 ACCATTGGACAAAATTGTTCTTCGA 59.932 36.000 10.37 0.00 42.43 3.71
2746 9291 5.810587 TGTTCTTCGATGTTAAGGTGATAGC 59.189 40.000 0.00 0.00 0.00 2.97
2759 9304 6.552445 AAGGTGATAGCTGTGAATAAGTCT 57.448 37.500 0.00 0.00 0.00 3.24
2760 9305 5.911752 AGGTGATAGCTGTGAATAAGTCTG 58.088 41.667 0.00 0.00 0.00 3.51
2761 9306 5.658634 AGGTGATAGCTGTGAATAAGTCTGA 59.341 40.000 0.00 0.00 0.00 3.27
2762 9307 5.751028 GGTGATAGCTGTGAATAAGTCTGAC 59.249 44.000 0.00 0.00 0.00 3.51
2763 9308 6.406400 GGTGATAGCTGTGAATAAGTCTGACT 60.406 42.308 4.06 4.06 0.00 3.41
2764 9309 7.201830 GGTGATAGCTGTGAATAAGTCTGACTA 60.202 40.741 11.30 0.31 0.00 2.59
2767 9312 6.597832 AGCTGTGAATAAGTCTGACTACTT 57.402 37.500 11.30 7.56 42.31 2.24
2768 9313 6.393990 AGCTGTGAATAAGTCTGACTACTTG 58.606 40.000 11.30 4.32 39.95 3.16
2813 9358 9.489393 GACGCATTTTCTTTTCTTTTTCAAATT 57.511 25.926 0.00 0.00 0.00 1.82
2816 9361 8.463709 GCATTTTCTTTTCTTTTTCAAATTCGC 58.536 29.630 0.00 0.00 0.00 4.70
2900 9445 5.718130 ACAATCATCACCATCAACTCCAATT 59.282 36.000 0.00 0.00 0.00 2.32
2926 9471 9.582648 TTATAAGATAGTAGAAAATTTGGGGGC 57.417 33.333 0.00 0.00 0.00 5.80
2927 9472 5.734031 AGATAGTAGAAAATTTGGGGGCT 57.266 39.130 0.00 0.00 0.00 5.19
2928 9473 6.841781 AGATAGTAGAAAATTTGGGGGCTA 57.158 37.500 0.00 0.00 0.00 3.93
2929 9474 7.408013 AGATAGTAGAAAATTTGGGGGCTAT 57.592 36.000 0.00 0.00 0.00 2.97
2930 9475 7.234355 AGATAGTAGAAAATTTGGGGGCTATG 58.766 38.462 0.00 0.00 0.00 2.23
2931 9476 5.466127 AGTAGAAAATTTGGGGGCTATGA 57.534 39.130 0.00 0.00 0.00 2.15
2932 9477 5.837829 AGTAGAAAATTTGGGGGCTATGAA 58.162 37.500 0.00 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.922505 TTTCGTTCGAATTTCATGAAATGTT 57.077 28.000 29.52 18.37 46.80 2.71
1 2 7.922505 TTTTCGTTCGAATTTCATGAAATGT 57.077 28.000 29.52 20.25 46.80 2.71
3 4 9.190858 TGAATTTTCGTTCGAATTTCATGAAAT 57.809 25.926 24.83 24.83 42.35 2.17
4 5 8.567369 TGAATTTTCGTTCGAATTTCATGAAA 57.433 26.923 22.52 22.52 34.46 2.69
5 6 8.741101 ATGAATTTTCGTTCGAATTTCATGAA 57.259 26.923 26.42 3.38 36.76 2.57
6 7 9.833182 TTATGAATTTTCGTTCGAATTTCATGA 57.167 25.926 30.00 25.39 37.59 3.07
7 8 9.871359 GTTATGAATTTTCGTTCGAATTTCATG 57.129 29.630 30.00 0.00 37.59 3.07
8 9 9.840427 AGTTATGAATTTTCGTTCGAATTTCAT 57.160 25.926 27.97 27.97 38.84 2.57
53 54 9.606631 AGTTCCATTTTGCACTTTTTGTTAATA 57.393 25.926 0.00 0.00 0.00 0.98
54 55 8.504812 AGTTCCATTTTGCACTTTTTGTTAAT 57.495 26.923 0.00 0.00 0.00 1.40
55 56 7.913674 AGTTCCATTTTGCACTTTTTGTTAA 57.086 28.000 0.00 0.00 0.00 2.01
56 57 7.913674 AAGTTCCATTTTGCACTTTTTGTTA 57.086 28.000 0.00 0.00 0.00 2.41
57 58 6.816134 AAGTTCCATTTTGCACTTTTTGTT 57.184 29.167 0.00 0.00 0.00 2.83
58 59 6.816134 AAAGTTCCATTTTGCACTTTTTGT 57.184 29.167 0.00 0.00 36.29 2.83
59 60 7.303998 TGAAAAGTTCCATTTTGCACTTTTTG 58.696 30.769 9.57 0.00 45.25 2.44
60 61 7.446001 TGAAAAGTTCCATTTTGCACTTTTT 57.554 28.000 9.57 0.00 45.25 1.94
61 62 7.336427 TGATGAAAAGTTCCATTTTGCACTTTT 59.664 29.630 8.27 8.27 46.97 2.27
62 63 6.822676 TGATGAAAAGTTCCATTTTGCACTTT 59.177 30.769 0.00 0.00 40.43 2.66
63 64 6.347696 TGATGAAAAGTTCCATTTTGCACTT 58.652 32.000 0.00 0.00 32.62 3.16
64 65 5.916318 TGATGAAAAGTTCCATTTTGCACT 58.084 33.333 0.00 0.00 32.62 4.40
65 66 6.601741 TTGATGAAAAGTTCCATTTTGCAC 57.398 33.333 0.00 0.00 32.62 4.57
66 67 7.804843 ATTTGATGAAAAGTTCCATTTTGCA 57.195 28.000 0.00 0.00 32.62 4.08
67 68 7.804600 GGAATTTGATGAAAAGTTCCATTTTGC 59.195 33.333 5.46 0.00 36.48 3.68
68 69 8.011106 CGGAATTTGATGAAAAGTTCCATTTTG 58.989 33.333 9.69 0.00 36.37 2.44
69 70 7.930865 TCGGAATTTGATGAAAAGTTCCATTTT 59.069 29.630 9.69 0.00 36.37 1.82
70 71 7.441017 TCGGAATTTGATGAAAAGTTCCATTT 58.559 30.769 9.69 0.00 36.37 2.32
71 72 6.991938 TCGGAATTTGATGAAAAGTTCCATT 58.008 32.000 9.69 0.00 36.37 3.16
72 73 6.588719 TCGGAATTTGATGAAAAGTTCCAT 57.411 33.333 9.69 0.00 36.37 3.41
73 74 6.183360 TGTTCGGAATTTGATGAAAAGTTCCA 60.183 34.615 9.69 0.00 36.37 3.53
74 75 6.212955 TGTTCGGAATTTGATGAAAAGTTCC 58.787 36.000 0.00 1.19 34.93 3.62
75 76 7.692908 TTGTTCGGAATTTGATGAAAAGTTC 57.307 32.000 0.00 0.00 0.00 3.01
76 77 8.485976 TTTTGTTCGGAATTTGATGAAAAGTT 57.514 26.923 0.00 0.00 0.00 2.66
77 78 8.485976 TTTTTGTTCGGAATTTGATGAAAAGT 57.514 26.923 0.00 0.00 0.00 2.66
99 100 6.472016 AGAAATGTTTGTGGTTCCAGTTTTT 58.528 32.000 0.00 0.00 0.00 1.94
100 101 6.048732 AGAAATGTTTGTGGTTCCAGTTTT 57.951 33.333 0.00 0.00 0.00 2.43
101 102 5.675684 AGAAATGTTTGTGGTTCCAGTTT 57.324 34.783 0.00 0.00 0.00 2.66
102 103 6.783708 TTAGAAATGTTTGTGGTTCCAGTT 57.216 33.333 0.00 0.00 0.00 3.16
103 104 6.783708 TTTAGAAATGTTTGTGGTTCCAGT 57.216 33.333 0.00 0.00 0.00 4.00
104 105 8.661352 AATTTTAGAAATGTTTGTGGTTCCAG 57.339 30.769 0.00 0.00 0.00 3.86
158 159 9.840427 TTTTAAAATTTGTCGGCAATTCAAAAA 57.160 22.222 1.89 5.01 35.28 1.94
159 160 9.495754 CTTTTAAAATTTGTCGGCAATTCAAAA 57.504 25.926 1.89 0.05 35.28 2.44
160 161 8.883731 TCTTTTAAAATTTGTCGGCAATTCAAA 58.116 25.926 1.89 0.00 35.92 2.69
161 162 8.425577 TCTTTTAAAATTTGTCGGCAATTCAA 57.574 26.923 1.89 0.00 34.18 2.69
162 163 8.425577 TTCTTTTAAAATTTGTCGGCAATTCA 57.574 26.923 1.89 0.00 34.18 2.57
163 164 9.316859 CATTCTTTTAAAATTTGTCGGCAATTC 57.683 29.630 1.89 0.00 34.18 2.17
164 165 8.835439 ACATTCTTTTAAAATTTGTCGGCAATT 58.165 25.926 1.89 0.00 34.18 2.32
165 166 8.281893 CACATTCTTTTAAAATTTGTCGGCAAT 58.718 29.630 1.89 0.00 34.18 3.56
166 167 7.492669 TCACATTCTTTTAAAATTTGTCGGCAA 59.507 29.630 0.00 0.00 0.00 4.52
167 168 6.980978 TCACATTCTTTTAAAATTTGTCGGCA 59.019 30.769 0.09 0.00 0.00 5.69
168 169 7.401484 TCACATTCTTTTAAAATTTGTCGGC 57.599 32.000 0.09 0.00 0.00 5.54
169 170 9.030301 AGTTCACATTCTTTTAAAATTTGTCGG 57.970 29.630 0.09 0.00 0.00 4.79
204 205 9.984190 ACCTAGTTTTAAAAAGTTGTTCACAAA 57.016 25.926 1.31 0.00 37.63 2.83
222 223 9.981114 CAAGAATTCCAAAAATGTACCTAGTTT 57.019 29.630 0.65 0.00 0.00 2.66
223 224 9.143155 ACAAGAATTCCAAAAATGTACCTAGTT 57.857 29.630 0.65 0.00 0.00 2.24
224 225 8.576442 CACAAGAATTCCAAAAATGTACCTAGT 58.424 33.333 0.65 0.00 0.00 2.57
225 226 7.542130 GCACAAGAATTCCAAAAATGTACCTAG 59.458 37.037 0.65 0.00 0.00 3.02
226 227 7.014711 TGCACAAGAATTCCAAAAATGTACCTA 59.985 33.333 0.65 0.00 0.00 3.08
227 228 6.183360 TGCACAAGAATTCCAAAAATGTACCT 60.183 34.615 0.65 0.00 0.00 3.08
228 229 5.988561 TGCACAAGAATTCCAAAAATGTACC 59.011 36.000 0.65 0.00 0.00 3.34
229 230 7.171337 ACATGCACAAGAATTCCAAAAATGTAC 59.829 33.333 0.65 0.00 0.00 2.90
230 231 7.215789 ACATGCACAAGAATTCCAAAAATGTA 58.784 30.769 0.65 0.00 0.00 2.29
231 232 6.056884 ACATGCACAAGAATTCCAAAAATGT 58.943 32.000 0.65 3.48 0.00 2.71
232 233 6.548441 ACATGCACAAGAATTCCAAAAATG 57.452 33.333 0.65 2.88 0.00 2.32
233 234 7.571080 AAACATGCACAAGAATTCCAAAAAT 57.429 28.000 0.65 0.00 0.00 1.82
234 235 6.998968 AAACATGCACAAGAATTCCAAAAA 57.001 29.167 0.65 0.00 0.00 1.94
235 236 6.596888 TCAAAACATGCACAAGAATTCCAAAA 59.403 30.769 0.65 0.00 0.00 2.44
236 237 6.111382 TCAAAACATGCACAAGAATTCCAAA 58.889 32.000 0.65 0.00 0.00 3.28
237 238 5.668471 TCAAAACATGCACAAGAATTCCAA 58.332 33.333 0.65 0.00 0.00 3.53
238 239 5.273674 TCAAAACATGCACAAGAATTCCA 57.726 34.783 0.65 0.00 0.00 3.53
239 240 6.790285 ATTCAAAACATGCACAAGAATTCC 57.210 33.333 0.65 0.00 0.00 3.01
240 241 8.124199 ACAAATTCAAAACATGCACAAGAATTC 58.876 29.630 0.00 0.00 34.29 2.17
241 242 7.911205 CACAAATTCAAAACATGCACAAGAATT 59.089 29.630 0.00 0.49 36.20 2.17
242 243 7.280428 TCACAAATTCAAAACATGCACAAGAAT 59.720 29.630 0.00 0.00 0.00 2.40
243 244 6.592994 TCACAAATTCAAAACATGCACAAGAA 59.407 30.769 0.00 0.00 0.00 2.52
244 245 6.104665 TCACAAATTCAAAACATGCACAAGA 58.895 32.000 0.00 0.00 0.00 3.02
245 246 6.347270 TCACAAATTCAAAACATGCACAAG 57.653 33.333 0.00 0.00 0.00 3.16
246 247 6.148315 TGTTCACAAATTCAAAACATGCACAA 59.852 30.769 0.00 0.00 0.00 3.33
247 248 5.640783 TGTTCACAAATTCAAAACATGCACA 59.359 32.000 0.00 0.00 0.00 4.57
248 249 6.104439 TGTTCACAAATTCAAAACATGCAC 57.896 33.333 0.00 0.00 0.00 4.57
249 250 6.732531 TTGTTCACAAATTCAAAACATGCA 57.267 29.167 0.00 0.00 32.11 3.96
250 251 8.617761 ATTTTGTTCACAAATTCAAAACATGC 57.382 26.923 5.95 0.00 44.30 4.06
251 252 9.991388 AGATTTTGTTCACAAATTCAAAACATG 57.009 25.926 21.03 0.00 44.30 3.21
258 259 9.619316 CCGTTATAGATTTTGTTCACAAATTCA 57.381 29.630 21.03 12.22 44.30 2.57
259 260 9.072294 CCCGTTATAGATTTTGTTCACAAATTC 57.928 33.333 15.07 15.07 44.30 2.17
260 261 8.798402 TCCCGTTATAGATTTTGTTCACAAATT 58.202 29.630 5.95 3.05 44.30 1.82
261 262 8.343168 TCCCGTTATAGATTTTGTTCACAAAT 57.657 30.769 5.95 0.00 44.30 2.32
262 263 7.747155 TCCCGTTATAGATTTTGTTCACAAA 57.253 32.000 0.79 0.79 43.36 2.83
263 264 7.228906 TGTTCCCGTTATAGATTTTGTTCACAA 59.771 33.333 0.00 0.00 0.00 3.33
264 265 6.711194 TGTTCCCGTTATAGATTTTGTTCACA 59.289 34.615 0.00 0.00 0.00 3.58
265 266 7.094933 ACTGTTCCCGTTATAGATTTTGTTCAC 60.095 37.037 0.00 0.00 0.00 3.18
266 267 6.938030 ACTGTTCCCGTTATAGATTTTGTTCA 59.062 34.615 0.00 0.00 0.00 3.18
267 268 7.373778 ACTGTTCCCGTTATAGATTTTGTTC 57.626 36.000 0.00 0.00 0.00 3.18
268 269 7.754851 AACTGTTCCCGTTATAGATTTTGTT 57.245 32.000 0.00 0.00 0.00 2.83
269 270 7.754851 AAACTGTTCCCGTTATAGATTTTGT 57.245 32.000 0.00 0.00 0.00 2.83
314 315 8.614469 AGAAAACAATGTTCAGGTTTCAAAAA 57.386 26.923 0.00 0.00 33.91 1.94
315 316 9.712305 TTAGAAAACAATGTTCAGGTTTCAAAA 57.288 25.926 0.00 0.00 33.91 2.44
316 317 9.712305 TTTAGAAAACAATGTTCAGGTTTCAAA 57.288 25.926 0.00 1.38 33.91 2.69
317 318 9.364989 CTTTAGAAAACAATGTTCAGGTTTCAA 57.635 29.630 0.00 0.00 33.91 2.69
318 319 8.527810 ACTTTAGAAAACAATGTTCAGGTTTCA 58.472 29.630 0.00 0.00 33.91 2.69
319 320 8.926715 ACTTTAGAAAACAATGTTCAGGTTTC 57.073 30.769 0.00 0.00 33.91 2.78
320 321 8.749354 AGACTTTAGAAAACAATGTTCAGGTTT 58.251 29.630 0.00 0.00 36.37 3.27
321 322 8.190784 CAGACTTTAGAAAACAATGTTCAGGTT 58.809 33.333 0.00 0.00 0.00 3.50
322 323 7.201821 CCAGACTTTAGAAAACAATGTTCAGGT 60.202 37.037 0.00 0.00 0.00 4.00
323 324 7.141363 CCAGACTTTAGAAAACAATGTTCAGG 58.859 38.462 0.00 0.00 0.00 3.86
324 325 7.707104 ACCAGACTTTAGAAAACAATGTTCAG 58.293 34.615 0.00 0.00 0.00 3.02
325 326 7.338196 TGACCAGACTTTAGAAAACAATGTTCA 59.662 33.333 0.00 0.00 0.00 3.18
326 327 7.703328 TGACCAGACTTTAGAAAACAATGTTC 58.297 34.615 0.00 0.00 0.00 3.18
327 328 7.639113 TGACCAGACTTTAGAAAACAATGTT 57.361 32.000 0.00 0.00 0.00 2.71
328 329 7.823745 ATGACCAGACTTTAGAAAACAATGT 57.176 32.000 0.00 0.00 0.00 2.71
340 341 9.014297 CCTCTTAACAAAATATGACCAGACTTT 57.986 33.333 0.00 0.00 0.00 2.66
341 342 8.383175 TCCTCTTAACAAAATATGACCAGACTT 58.617 33.333 0.00 0.00 0.00 3.01
342 343 7.918076 TCCTCTTAACAAAATATGACCAGACT 58.082 34.615 0.00 0.00 0.00 3.24
343 344 8.451748 GTTCCTCTTAACAAAATATGACCAGAC 58.548 37.037 0.00 0.00 0.00 3.51
344 345 8.160765 TGTTCCTCTTAACAAAATATGACCAGA 58.839 33.333 0.00 0.00 36.45 3.86
345 346 8.335532 TGTTCCTCTTAACAAAATATGACCAG 57.664 34.615 0.00 0.00 36.45 4.00
346 347 8.877864 ATGTTCCTCTTAACAAAATATGACCA 57.122 30.769 0.00 0.00 42.33 4.02
455 456 9.703892 TGAATCTGTTTCTGTTTTTCTTTTTCA 57.296 25.926 0.70 0.00 35.23 2.69
456 457 9.958285 GTGAATCTGTTTCTGTTTTTCTTTTTC 57.042 29.630 0.70 0.00 35.23 2.29
457 458 8.647226 CGTGAATCTGTTTCTGTTTTTCTTTTT 58.353 29.630 0.70 0.00 35.23 1.94
458 459 8.026607 TCGTGAATCTGTTTCTGTTTTTCTTTT 58.973 29.630 0.70 0.00 35.23 2.27
459 460 7.535139 TCGTGAATCTGTTTCTGTTTTTCTTT 58.465 30.769 0.70 0.00 35.23 2.52
460 461 7.083875 TCGTGAATCTGTTTCTGTTTTTCTT 57.916 32.000 0.70 0.00 35.23 2.52
461 462 6.677781 TCGTGAATCTGTTTCTGTTTTTCT 57.322 33.333 0.70 0.00 35.23 2.52
462 463 7.734538 TTTCGTGAATCTGTTTCTGTTTTTC 57.265 32.000 0.70 0.00 35.23 2.29
463 464 8.527567 TTTTTCGTGAATCTGTTTCTGTTTTT 57.472 26.923 0.70 0.00 35.23 1.94
508 509 9.173021 CCTGGTTTCTCTTTTTATTTTGGTTTT 57.827 29.630 0.00 0.00 0.00 2.43
509 510 8.544622 TCCTGGTTTCTCTTTTTATTTTGGTTT 58.455 29.630 0.00 0.00 0.00 3.27
510 511 8.084985 TCCTGGTTTCTCTTTTTATTTTGGTT 57.915 30.769 0.00 0.00 0.00 3.67
511 512 7.669089 TCCTGGTTTCTCTTTTTATTTTGGT 57.331 32.000 0.00 0.00 0.00 3.67
512 513 8.956533 TTTCCTGGTTTCTCTTTTTATTTTGG 57.043 30.769 0.00 0.00 0.00 3.28
513 514 9.816354 TCTTTCCTGGTTTCTCTTTTTATTTTG 57.184 29.630 0.00 0.00 0.00 2.44
515 516 9.817809 GTTCTTTCCTGGTTTCTCTTTTTATTT 57.182 29.630 0.00 0.00 0.00 1.40
516 517 8.421784 GGTTCTTTCCTGGTTTCTCTTTTTATT 58.578 33.333 0.00 0.00 0.00 1.40
517 518 7.255486 CGGTTCTTTCCTGGTTTCTCTTTTTAT 60.255 37.037 0.00 0.00 0.00 1.40
518 519 6.038936 CGGTTCTTTCCTGGTTTCTCTTTTTA 59.961 38.462 0.00 0.00 0.00 1.52
519 520 5.163550 CGGTTCTTTCCTGGTTTCTCTTTTT 60.164 40.000 0.00 0.00 0.00 1.94
520 521 4.338400 CGGTTCTTTCCTGGTTTCTCTTTT 59.662 41.667 0.00 0.00 0.00 2.27
521 522 3.883489 CGGTTCTTTCCTGGTTTCTCTTT 59.117 43.478 0.00 0.00 0.00 2.52
522 523 3.477530 CGGTTCTTTCCTGGTTTCTCTT 58.522 45.455 0.00 0.00 0.00 2.85
523 524 2.224548 CCGGTTCTTTCCTGGTTTCTCT 60.225 50.000 0.00 0.00 0.00 3.10
524 525 2.152016 CCGGTTCTTTCCTGGTTTCTC 58.848 52.381 0.00 0.00 0.00 2.87
525 526 1.493446 ACCGGTTCTTTCCTGGTTTCT 59.507 47.619 0.00 0.00 33.23 2.52
526 527 1.977056 ACCGGTTCTTTCCTGGTTTC 58.023 50.000 0.00 0.00 33.23 2.78
527 528 2.447408 AACCGGTTCTTTCCTGGTTT 57.553 45.000 15.86 0.00 39.42 3.27
528 529 2.429250 CAAAACCGGTTCTTTCCTGGTT 59.571 45.455 22.53 4.65 41.89 3.67
529 530 2.028876 CAAAACCGGTTCTTTCCTGGT 58.971 47.619 22.53 0.00 36.50 4.00
530 531 1.339929 CCAAAACCGGTTCTTTCCTGG 59.660 52.381 22.53 15.61 0.00 4.45
531 532 2.303175 TCCAAAACCGGTTCTTTCCTG 58.697 47.619 22.53 10.80 0.00 3.86
532 533 2.691526 GTTCCAAAACCGGTTCTTTCCT 59.308 45.455 22.53 0.00 0.00 3.36
533 534 2.223876 GGTTCCAAAACCGGTTCTTTCC 60.224 50.000 22.53 14.28 45.33 3.13
534 535 3.088194 GGTTCCAAAACCGGTTCTTTC 57.912 47.619 22.53 9.20 45.33 2.62
544 545 4.320567 GCAGCTTCTAGAAGGTTCCAAAAC 60.321 45.833 29.88 12.42 45.80 2.43
545 546 3.821033 GCAGCTTCTAGAAGGTTCCAAAA 59.179 43.478 29.88 0.00 45.80 2.44
546 547 3.412386 GCAGCTTCTAGAAGGTTCCAAA 58.588 45.455 29.88 0.00 45.80 3.28
547 548 2.612972 CGCAGCTTCTAGAAGGTTCCAA 60.613 50.000 29.88 0.00 45.80 3.53
548 549 1.066858 CGCAGCTTCTAGAAGGTTCCA 60.067 52.381 29.88 0.00 45.80 3.53
549 550 1.204941 TCGCAGCTTCTAGAAGGTTCC 59.795 52.381 29.88 22.38 45.80 3.62
550 551 2.164624 TCTCGCAGCTTCTAGAAGGTTC 59.835 50.000 29.88 24.83 45.80 3.62
551 552 2.171840 TCTCGCAGCTTCTAGAAGGTT 58.828 47.619 29.88 9.43 45.80 3.50
553 554 2.808244 CTTCTCGCAGCTTCTAGAAGG 58.192 52.381 29.22 17.06 40.71 3.46
554 555 2.165437 ACCTTCTCGCAGCTTCTAGAAG 59.835 50.000 25.42 25.42 42.91 2.85
555 556 2.171840 ACCTTCTCGCAGCTTCTAGAA 58.828 47.619 4.81 4.81 0.00 2.10
556 557 1.840737 ACCTTCTCGCAGCTTCTAGA 58.159 50.000 0.00 0.00 0.00 2.43
557 558 2.094494 TGAACCTTCTCGCAGCTTCTAG 60.094 50.000 0.00 0.00 0.00 2.43
558 559 1.893137 TGAACCTTCTCGCAGCTTCTA 59.107 47.619 0.00 0.00 0.00 2.10
559 560 0.681733 TGAACCTTCTCGCAGCTTCT 59.318 50.000 0.00 0.00 0.00 2.85
560 561 0.793250 GTGAACCTTCTCGCAGCTTC 59.207 55.000 0.00 0.00 0.00 3.86
561 562 0.106708 TGTGAACCTTCTCGCAGCTT 59.893 50.000 0.00 0.00 32.21 3.74
562 563 0.320247 CTGTGAACCTTCTCGCAGCT 60.320 55.000 1.58 0.00 44.51 4.24
563 564 2.157421 CTGTGAACCTTCTCGCAGC 58.843 57.895 1.58 0.00 44.51 5.25
565 566 1.338105 CCATCTGTGAACCTTCTCGCA 60.338 52.381 0.00 0.00 34.72 5.10
566 567 1.363744 CCATCTGTGAACCTTCTCGC 58.636 55.000 0.00 0.00 0.00 5.03
567 568 2.009042 GCCCATCTGTGAACCTTCTCG 61.009 57.143 0.00 0.00 0.00 4.04
568 569 1.680249 GGCCCATCTGTGAACCTTCTC 60.680 57.143 0.00 0.00 0.00 2.87
569 570 0.329596 GGCCCATCTGTGAACCTTCT 59.670 55.000 0.00 0.00 0.00 2.85
570 571 1.026718 CGGCCCATCTGTGAACCTTC 61.027 60.000 0.00 0.00 0.00 3.46
571 572 1.002134 CGGCCCATCTGTGAACCTT 60.002 57.895 0.00 0.00 0.00 3.50
572 573 2.671070 CGGCCCATCTGTGAACCT 59.329 61.111 0.00 0.00 0.00 3.50
573 574 2.438434 CCGGCCCATCTGTGAACC 60.438 66.667 0.00 0.00 0.00 3.62
574 575 3.134127 GCCGGCCCATCTGTGAAC 61.134 66.667 18.11 0.00 0.00 3.18
575 576 4.424711 GGCCGGCCCATCTGTGAA 62.425 66.667 36.64 0.00 0.00 3.18
586 587 2.463589 TATCGATCCAATGGGCCGGC 62.464 60.000 21.18 21.18 32.99 6.13
587 588 0.673644 GTATCGATCCAATGGGCCGG 60.674 60.000 0.00 0.00 32.99 6.13
588 589 0.673644 GGTATCGATCCAATGGGCCG 60.674 60.000 0.00 3.59 0.00 6.13
589 590 0.400213 TGGTATCGATCCAATGGGCC 59.600 55.000 0.00 0.00 31.50 5.80
590 591 1.072331 ACTGGTATCGATCCAATGGGC 59.928 52.381 0.00 0.00 34.35 5.36
591 592 2.104792 ACACTGGTATCGATCCAATGGG 59.895 50.000 21.19 13.28 36.64 4.00
592 593 3.133691 CACACTGGTATCGATCCAATGG 58.866 50.000 21.19 13.96 36.64 3.16
593 594 2.545526 GCACACTGGTATCGATCCAATG 59.454 50.000 17.85 17.85 38.05 2.82
594 595 2.803133 CGCACACTGGTATCGATCCAAT 60.803 50.000 0.00 0.00 34.35 3.16
595 596 1.470805 CGCACACTGGTATCGATCCAA 60.471 52.381 0.00 0.00 34.35 3.53
596 597 0.102300 CGCACACTGGTATCGATCCA 59.898 55.000 0.00 8.75 0.00 3.41
597 598 0.597637 CCGCACACTGGTATCGATCC 60.598 60.000 0.00 3.95 0.00 3.36
598 599 0.102481 ACCGCACACTGGTATCGATC 59.898 55.000 0.00 0.00 38.15 3.69
599 600 1.066605 GTACCGCACACTGGTATCGAT 59.933 52.381 2.16 2.16 43.50 3.59
600 601 0.452987 GTACCGCACACTGGTATCGA 59.547 55.000 0.00 0.00 43.50 3.59
601 602 0.864377 CGTACCGCACACTGGTATCG 60.864 60.000 0.00 0.00 43.50 2.92
602 603 0.171903 ACGTACCGCACACTGGTATC 59.828 55.000 0.00 0.00 43.50 2.24
603 604 0.171903 GACGTACCGCACACTGGTAT 59.828 55.000 0.00 0.00 43.50 2.73
604 605 0.890542 AGACGTACCGCACACTGGTA 60.891 55.000 0.00 0.00 40.96 3.25
605 606 1.741327 AAGACGTACCGCACACTGGT 61.741 55.000 0.00 0.00 43.62 4.00
606 607 0.599204 AAAGACGTACCGCACACTGG 60.599 55.000 0.00 0.00 0.00 4.00
607 608 0.782384 GAAAGACGTACCGCACACTG 59.218 55.000 0.00 0.00 0.00 3.66
608 609 0.319297 GGAAAGACGTACCGCACACT 60.319 55.000 0.00 0.00 0.00 3.55
609 610 1.611592 CGGAAAGACGTACCGCACAC 61.612 60.000 9.29 0.00 40.19 3.82
610 611 1.372004 CGGAAAGACGTACCGCACA 60.372 57.895 9.29 0.00 40.19 4.57
611 612 2.090524 CCGGAAAGACGTACCGCAC 61.091 63.158 14.46 0.00 44.45 5.34
612 613 1.804396 TTCCGGAAAGACGTACCGCA 61.804 55.000 16.28 1.03 44.45 5.69
613 614 0.667184 TTTCCGGAAAGACGTACCGC 60.667 55.000 25.67 0.00 44.45 5.68
614 615 3.495124 TTTCCGGAAAGACGTACCG 57.505 52.632 25.67 13.41 45.24 4.02
623 624 3.722295 CGCGCTGCTTTCCGGAAA 61.722 61.111 27.33 27.33 0.00 3.13
627 628 4.152625 CTTCCGCGCTGCTTTCCG 62.153 66.667 5.56 0.00 0.00 4.30
628 629 1.852067 TTTCTTCCGCGCTGCTTTCC 61.852 55.000 5.56 0.00 0.00 3.13
629 630 0.040425 TTTTCTTCCGCGCTGCTTTC 60.040 50.000 5.56 0.00 0.00 2.62
630 631 0.383949 TTTTTCTTCCGCGCTGCTTT 59.616 45.000 5.56 0.00 0.00 3.51
631 632 2.029743 TTTTTCTTCCGCGCTGCTT 58.970 47.368 5.56 0.00 0.00 3.91
632 633 3.744559 TTTTTCTTCCGCGCTGCT 58.255 50.000 5.56 0.00 0.00 4.24
650 651 2.384828 AGTTCCCCTTGTTCGCTTTTT 58.615 42.857 0.00 0.00 0.00 1.94
651 652 2.067365 AGTTCCCCTTGTTCGCTTTT 57.933 45.000 0.00 0.00 0.00 2.27
652 653 1.681264 CAAGTTCCCCTTGTTCGCTTT 59.319 47.619 0.00 0.00 44.64 3.51
653 654 1.318576 CAAGTTCCCCTTGTTCGCTT 58.681 50.000 0.00 0.00 44.64 4.68
654 655 3.021451 CAAGTTCCCCTTGTTCGCT 57.979 52.632 0.00 0.00 44.64 4.93
661 662 3.193782 AGGATAGCTTCAAGTTCCCCTT 58.806 45.455 0.00 0.00 0.00 3.95
662 663 2.852130 AGGATAGCTTCAAGTTCCCCT 58.148 47.619 0.00 0.00 0.00 4.79
663 664 3.492829 CGTAGGATAGCTTCAAGTTCCCC 60.493 52.174 0.00 0.00 0.00 4.81
664 665 3.718815 CGTAGGATAGCTTCAAGTTCCC 58.281 50.000 0.00 0.00 0.00 3.97
681 682 2.224209 CCTACTTGTATTGGGCCCGTAG 60.224 54.545 19.37 19.00 0.00 3.51
682 683 1.764134 CCTACTTGTATTGGGCCCGTA 59.236 52.381 19.37 10.22 0.00 4.02
683 684 0.544697 CCTACTTGTATTGGGCCCGT 59.455 55.000 19.37 11.40 0.00 5.28
684 685 0.544697 ACCTACTTGTATTGGGCCCG 59.455 55.000 19.37 2.61 0.00 6.13
685 686 2.820728 AACCTACTTGTATTGGGCCC 57.179 50.000 17.59 17.59 0.00 5.80
686 687 2.681344 CGAAACCTACTTGTATTGGGCC 59.319 50.000 0.00 0.00 0.00 5.80
687 688 2.096980 GCGAAACCTACTTGTATTGGGC 59.903 50.000 0.00 0.00 0.00 5.36
688 689 3.374058 CAGCGAAACCTACTTGTATTGGG 59.626 47.826 0.00 0.00 0.00 4.12
689 690 4.000988 ACAGCGAAACCTACTTGTATTGG 58.999 43.478 0.00 0.00 0.00 3.16
690 691 4.142902 CCACAGCGAAACCTACTTGTATTG 60.143 45.833 0.00 0.00 0.00 1.90
691 692 4.000988 CCACAGCGAAACCTACTTGTATT 58.999 43.478 0.00 0.00 0.00 1.89
692 693 3.596214 CCACAGCGAAACCTACTTGTAT 58.404 45.455 0.00 0.00 0.00 2.29
693 694 2.289195 CCCACAGCGAAACCTACTTGTA 60.289 50.000 0.00 0.00 0.00 2.41
694 695 1.542547 CCCACAGCGAAACCTACTTGT 60.543 52.381 0.00 0.00 0.00 3.16
695 696 1.156736 CCCACAGCGAAACCTACTTG 58.843 55.000 0.00 0.00 0.00 3.16
696 697 0.763035 ACCCACAGCGAAACCTACTT 59.237 50.000 0.00 0.00 0.00 2.24
697 698 0.034896 CACCCACAGCGAAACCTACT 59.965 55.000 0.00 0.00 0.00 2.57
698 699 0.034337 TCACCCACAGCGAAACCTAC 59.966 55.000 0.00 0.00 0.00 3.18
699 700 0.320374 CTCACCCACAGCGAAACCTA 59.680 55.000 0.00 0.00 0.00 3.08
700 701 1.071471 CTCACCCACAGCGAAACCT 59.929 57.895 0.00 0.00 0.00 3.50
701 702 2.617274 GCTCACCCACAGCGAAACC 61.617 63.158 0.00 0.00 0.00 3.27
702 703 2.617274 GGCTCACCCACAGCGAAAC 61.617 63.158 0.00 0.00 37.81 2.78
703 704 2.281484 GGCTCACCCACAGCGAAA 60.281 61.111 0.00 0.00 37.81 3.46
704 705 3.555324 TGGCTCACCCACAGCGAA 61.555 61.111 0.00 0.00 39.18 4.70
712 713 4.994744 GCAAACAATGGCTCACCC 57.005 55.556 0.00 0.00 33.59 4.61
795 796 2.667199 ACAAGGTAACGCGTGGCC 60.667 61.111 14.98 18.56 46.39 5.36
875 877 1.086067 TAGACGAGCGGAGTACGTGG 61.086 60.000 0.00 0.00 46.52 4.94
904 906 0.822164 GGATTCTTTCTCGACGGGGA 59.178 55.000 0.00 0.00 0.00 4.81
913 915 1.280421 AGCTGGCTTCGGATTCTTTCT 59.720 47.619 0.00 0.00 0.00 2.52
914 916 1.668237 GAGCTGGCTTCGGATTCTTTC 59.332 52.381 0.00 0.00 0.00 2.62
915 917 1.680249 GGAGCTGGCTTCGGATTCTTT 60.680 52.381 0.00 0.00 0.00 2.52
916 918 0.107459 GGAGCTGGCTTCGGATTCTT 60.107 55.000 0.00 0.00 0.00 2.52
977 979 0.650512 CTCAGAACGTTGTTGTGCGT 59.349 50.000 5.00 0.00 43.64 5.24
984 986 2.533266 ACATGAGCTCAGAACGTTGT 57.467 45.000 22.96 16.78 0.00 3.32
1004 1006 4.735132 GTGCGCCTACTGCCGTCA 62.735 66.667 4.18 0.00 36.24 4.35
1299 1328 2.125106 GCCACGTCCAGGATGTCC 60.125 66.667 11.83 2.42 28.28 4.02
1578 1607 3.437795 CGGCACTCCTCGTACGGT 61.438 66.667 16.52 1.82 0.00 4.83
1683 1712 1.748244 GCCAACAGCTCAGCCATGATA 60.748 52.381 0.00 0.00 38.99 2.15
1745 1774 2.016393 TAGCTTGGACATCTCGGCGG 62.016 60.000 7.21 0.00 0.00 6.13
1980 2015 2.636830 GGACACTACAGAGCAATGCAT 58.363 47.619 8.35 0.00 0.00 3.96
2016 2059 0.322816 TGCAGAAGGGTTGCAGGATC 60.323 55.000 0.00 0.00 45.89 3.36
2127 2387 8.552865 TGCATTTCAAAGATTTGTCTCAAATTG 58.447 29.630 8.72 5.36 39.18 2.32
2128 2388 8.553696 GTGCATTTCAAAGATTTGTCTCAAATT 58.446 29.630 8.72 0.00 39.18 1.82
2208 2605 7.829211 ACGATTGAAGGATAAATGGAAGAGAAA 59.171 33.333 0.00 0.00 0.00 2.52
2319 2724 4.398988 TGACAAGTGACTTGAACAAAGCAT 59.601 37.500 30.03 5.68 43.42 3.79
2324 2729 4.269183 ACCATGACAAGTGACTTGAACAA 58.731 39.130 30.03 13.08 43.42 2.83
2328 2733 2.618241 GCAACCATGACAAGTGACTTGA 59.382 45.455 30.03 10.65 43.42 3.02
2351 2756 5.118729 TCACTCTTAACTGTGGGGAAAAA 57.881 39.130 0.00 0.00 35.15 1.94
2352 2757 4.781775 TCACTCTTAACTGTGGGGAAAA 57.218 40.909 0.00 0.00 35.15 2.29
2353 2758 4.993705 ATCACTCTTAACTGTGGGGAAA 57.006 40.909 0.00 0.00 35.15 3.13
2354 2759 4.349636 TCAATCACTCTTAACTGTGGGGAA 59.650 41.667 0.00 0.00 35.15 3.97
2355 2760 3.907474 TCAATCACTCTTAACTGTGGGGA 59.093 43.478 0.00 0.00 35.15 4.81
2362 2767 5.784177 TCGAAGCTTCAATCACTCTTAACT 58.216 37.500 25.47 0.00 0.00 2.24
2368 2773 2.275318 CCCTCGAAGCTTCAATCACTC 58.725 52.381 25.47 0.00 0.00 3.51
2372 2777 1.373570 CCACCCTCGAAGCTTCAATC 58.626 55.000 25.47 0.00 0.00 2.67
2378 2783 2.270205 CATGCCACCCTCGAAGCT 59.730 61.111 0.00 0.00 0.00 3.74
2379 2784 2.045926 ACATGCCACCCTCGAAGC 60.046 61.111 0.00 0.00 0.00 3.86
2381 2786 0.109532 TTTGACATGCCACCCTCGAA 59.890 50.000 0.00 0.00 0.00 3.71
2383 2788 0.958091 TTTTTGACATGCCACCCTCG 59.042 50.000 0.00 0.00 0.00 4.63
2384 2789 3.763897 AGTATTTTTGACATGCCACCCTC 59.236 43.478 0.00 0.00 0.00 4.30
2386 2791 3.119137 GGAGTATTTTTGACATGCCACCC 60.119 47.826 0.00 0.00 0.00 4.61
2387 2792 3.119137 GGGAGTATTTTTGACATGCCACC 60.119 47.826 0.00 0.00 0.00 4.61
2388 2793 3.763897 AGGGAGTATTTTTGACATGCCAC 59.236 43.478 0.00 0.00 0.00 5.01
2412 3060 5.524511 TCTGTGACAAATAATTTCGGACG 57.475 39.130 0.00 0.00 0.00 4.79
2440 3088 1.583404 GCATGCGCTTCCAAAATTACG 59.417 47.619 9.73 0.00 34.30 3.18
2469 3117 8.686334 ACTGAATTGTTTATGTTGTTCTGTTCT 58.314 29.630 0.00 0.00 0.00 3.01
2544 9081 3.372060 CTTGGTTTTCTTTCTTCACGGC 58.628 45.455 0.00 0.00 0.00 5.68
2547 9084 3.798878 GCTGCTTGGTTTTCTTTCTTCAC 59.201 43.478 0.00 0.00 0.00 3.18
2555 9092 1.484038 TGTTGGCTGCTTGGTTTTCT 58.516 45.000 0.00 0.00 0.00 2.52
2560 9097 1.368579 GCATTGTTGGCTGCTTGGT 59.631 52.632 0.00 0.00 35.49 3.67
2561 9098 0.947180 GTGCATTGTTGGCTGCTTGG 60.947 55.000 0.00 0.00 39.16 3.61
2588 9129 2.049526 TCACATCGTTGTCGCGCT 60.050 55.556 5.56 0.00 32.34 5.92
2607 9148 6.155136 TGTAAATATTGTGTGTGCAATGGTG 58.845 36.000 0.00 0.00 39.20 4.17
2608 9149 6.338214 TGTAAATATTGTGTGTGCAATGGT 57.662 33.333 0.00 0.00 39.20 3.55
2609 9150 7.384660 ACTTTGTAAATATTGTGTGTGCAATGG 59.615 33.333 0.00 0.00 39.20 3.16
2610 9151 8.296799 ACTTTGTAAATATTGTGTGTGCAATG 57.703 30.769 0.00 0.00 39.20 2.82
2611 9152 8.359642 AGACTTTGTAAATATTGTGTGTGCAAT 58.640 29.630 0.00 0.00 41.42 3.56
2612 9153 7.711846 AGACTTTGTAAATATTGTGTGTGCAA 58.288 30.769 0.00 0.00 0.00 4.08
2613 9154 7.270757 AGACTTTGTAAATATTGTGTGTGCA 57.729 32.000 0.00 0.00 0.00 4.57
2614 9155 7.059488 CGAAGACTTTGTAAATATTGTGTGTGC 59.941 37.037 0.00 0.00 0.00 4.57
2632 9173 7.576861 TTCTTTCCCAATTAAACGAAGACTT 57.423 32.000 0.00 0.00 0.00 3.01
2634 9175 7.590279 TGATTCTTTCCCAATTAAACGAAGAC 58.410 34.615 0.00 0.00 0.00 3.01
2635 9176 7.753309 TGATTCTTTCCCAATTAAACGAAGA 57.247 32.000 0.00 0.00 0.00 2.87
2636 9177 8.986477 ATTGATTCTTTCCCAATTAAACGAAG 57.014 30.769 0.00 0.00 0.00 3.79
2695 9240 5.930837 TGTCCAATGGTTTCTTTTTGTCT 57.069 34.783 0.00 0.00 0.00 3.41
2717 9262 7.936584 TCACCTTAACATCGAAGAACAATTTT 58.063 30.769 0.00 0.00 43.58 1.82
2721 9266 6.312918 GCTATCACCTTAACATCGAAGAACAA 59.687 38.462 0.00 0.00 43.58 2.83
2729 9274 4.682787 TCACAGCTATCACCTTAACATCG 58.317 43.478 0.00 0.00 0.00 3.84
2731 9276 8.267894 ACTTATTCACAGCTATCACCTTAACAT 58.732 33.333 0.00 0.00 0.00 2.71
2746 9291 6.925211 TCCAAGTAGTCAGACTTATTCACAG 58.075 40.000 8.80 0.00 37.57 3.66
2764 9309 9.372369 CGTCTTATTCTTCTATCTTTTCCAAGT 57.628 33.333 0.00 0.00 0.00 3.16
2767 9312 7.327975 TGCGTCTTATTCTTCTATCTTTTCCA 58.672 34.615 0.00 0.00 0.00 3.53
2768 9313 7.772332 TGCGTCTTATTCTTCTATCTTTTCC 57.228 36.000 0.00 0.00 0.00 3.13
2777 9322 8.787852 AGAAAAGAAAATGCGTCTTATTCTTCT 58.212 29.630 8.50 4.76 38.89 2.85
2789 9334 8.663753 CGAATTTGAAAAAGAAAAGAAAATGCG 58.336 29.630 0.00 0.00 30.75 4.73
2813 9358 0.319083 AAACTCACCATACCACGCGA 59.681 50.000 15.93 0.00 0.00 5.87
2816 9361 4.570772 CCATCTAAAACTCACCATACCACG 59.429 45.833 0.00 0.00 0.00 4.94
2900 9445 9.582648 GCCCCCAAATTTTCTACTATCTTATAA 57.417 33.333 0.00 0.00 0.00 0.98


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.