Multiple sequence alignment - TraesCS5D01G063800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G063800 chr5D 100.000 4121 0 0 1 4121 59046181 59042061 0.000000e+00 7611.0
1 TraesCS5D01G063800 chr5D 85.602 1014 132 9 1929 2938 58501949 58502952 0.000000e+00 1051.0
2 TraesCS5D01G063800 chr5D 76.190 609 128 16 1118 1719 58501044 58501642 5.180000e-79 305.0
3 TraesCS5D01G063800 chr5B 92.529 3306 162 30 749 4018 72097255 72100511 0.000000e+00 4658.0
4 TraesCS5D01G063800 chr5B 85.897 1014 129 9 1929 2938 63544058 63545061 0.000000e+00 1068.0
5 TraesCS5D01G063800 chr5B 84.464 1017 144 9 1929 2941 62028365 62027359 0.000000e+00 990.0
6 TraesCS5D01G063800 chr5B 82.692 416 62 6 59 469 689877604 689877194 1.090000e-95 361.0
7 TraesCS5D01G063800 chr5B 75.417 720 151 21 1102 1813 63543137 63543838 3.970000e-85 326.0
8 TraesCS5D01G063800 chr5B 75.207 726 154 21 1102 1820 62029286 62028580 1.850000e-83 320.0
9 TraesCS5D01G063800 chr5B 90.173 173 14 2 543 714 72093875 72094045 5.360000e-54 222.0
10 TraesCS5D01G063800 chr5B 98.113 106 2 0 4016 4121 72100548 72100653 7.030000e-43 185.0
11 TraesCS5D01G063800 chr5A 93.525 2471 117 13 750 3201 47541725 47539279 0.000000e+00 3637.0
12 TraesCS5D01G063800 chr5A 87.045 1320 121 29 1943 3251 47461016 47459736 0.000000e+00 1445.0
13 TraesCS5D01G063800 chr5A 85.503 1014 133 8 1929 2938 46709888 46710891 0.000000e+00 1046.0
14 TraesCS5D01G063800 chr5A 86.542 587 55 12 3322 3897 47459652 47459079 3.500000e-175 625.0
15 TraesCS5D01G063800 chr5A 82.723 683 105 8 1102 1776 47461962 47461285 2.740000e-166 595.0
16 TraesCS5D01G063800 chr5A 82.405 682 78 19 77 743 47542430 47541776 1.290000e-154 556.0
17 TraesCS5D01G063800 chr5A 78.395 486 88 14 2434 2913 47774494 47774968 2.410000e-77 300.0
18 TraesCS5D01G063800 chr5A 74.548 719 159 19 1102 1813 46708961 46709662 4.030000e-75 292.0
19 TraesCS5D01G063800 chr5A 90.196 204 18 2 3672 3874 47537637 47537435 8.780000e-67 265.0
20 TraesCS5D01G063800 chr5A 90.604 149 13 1 3273 3421 47538808 47538661 3.250000e-46 196.0
21 TraesCS5D01G063800 chr5A 97.170 106 3 0 4016 4121 47458117 47458012 3.270000e-41 180.0
22 TraesCS5D01G063800 chr7D 81.364 601 100 8 2361 2951 45432946 45432348 2.880000e-131 479.0
23 TraesCS5D01G063800 chr7D 93.103 58 3 1 1 57 231678713 231678770 2.640000e-12 84.2
24 TraesCS5D01G063800 chr7D 96.000 50 2 0 1 50 339602327 339602376 9.490000e-12 82.4
25 TraesCS5D01G063800 chr1D 84.071 452 58 10 50 494 232436765 232437209 1.370000e-114 424.0
26 TraesCS5D01G063800 chr4D 78.520 554 114 3 2361 2913 485538798 485539347 3.920000e-95 359.0
27 TraesCS5D01G063800 chr4D 82.512 406 65 3 1951 2356 485538195 485538594 6.550000e-93 351.0
28 TraesCS5D01G063800 chr4B 82.632 380 63 2 1979 2358 619364815 619364439 2.370000e-87 333.0
29 TraesCS5D01G063800 chr3B 81.720 279 37 10 214 490 43596796 43597062 1.930000e-53 220.0
30 TraesCS5D01G063800 chr2B 76.906 446 57 22 50 490 598462311 598462715 1.160000e-50 211.0
31 TraesCS5D01G063800 chr3D 76.792 293 42 10 97 388 498890428 498890695 1.540000e-29 141.0
32 TraesCS5D01G063800 chr3D 96.000 50 2 0 1 50 137828437 137828486 9.490000e-12 82.4
33 TraesCS5D01G063800 chr6A 81.765 170 19 7 216 383 389571124 389571283 9.300000e-27 132.0
34 TraesCS5D01G063800 chr7B 82.099 162 19 6 216 376 721812313 721812161 3.340000e-26 130.0
35 TraesCS5D01G063800 chr7B 81.250 160 16 7 216 374 721812136 721811990 2.600000e-22 117.0
36 TraesCS5D01G063800 chr7B 81.731 104 16 3 330 433 25657775 25657675 2.640000e-12 84.2
37 TraesCS5D01G063800 chr7A 81.176 170 20 7 216 383 31001050 31000891 4.320000e-25 126.0
38 TraesCS5D01G063800 chr7A 80.368 163 20 7 216 376 299537823 299537975 3.370000e-21 113.0
39 TraesCS5D01G063800 chr2D 94.643 56 3 0 1590 1645 9628618 9628563 2.040000e-13 87.9
40 TraesCS5D01G063800 chr2D 96.000 50 2 0 1 50 228547633 228547682 9.490000e-12 82.4
41 TraesCS5D01G063800 chr2D 95.918 49 2 0 2 50 128229652 128229700 3.410000e-11 80.5
42 TraesCS5D01G063800 chr6D 96.078 51 2 0 1 51 55815432 55815482 2.640000e-12 84.2
43 TraesCS5D01G063800 chr2A 96.000 50 2 0 1 50 341080867 341080818 9.490000e-12 82.4
44 TraesCS5D01G063800 chr2A 96.000 50 2 0 1 50 550557412 550557461 9.490000e-12 82.4
45 TraesCS5D01G063800 chr1B 96.000 50 2 0 1 50 238404656 238404607 9.490000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G063800 chr5D 59042061 59046181 4120 True 7611.000000 7611 100.0000 1 4121 1 chr5D.!!$R1 4120
1 TraesCS5D01G063800 chr5D 58501044 58502952 1908 False 678.000000 1051 80.8960 1118 2938 2 chr5D.!!$F1 1820
2 TraesCS5D01G063800 chr5B 72093875 72100653 6778 False 1688.333333 4658 93.6050 543 4121 3 chr5B.!!$F2 3578
3 TraesCS5D01G063800 chr5B 63543137 63545061 1924 False 697.000000 1068 80.6570 1102 2938 2 chr5B.!!$F1 1836
4 TraesCS5D01G063800 chr5B 62027359 62029286 1927 True 655.000000 990 79.8355 1102 2941 2 chr5B.!!$R2 1839
5 TraesCS5D01G063800 chr5A 47537435 47542430 4995 True 1163.500000 3637 89.1825 77 3874 4 chr5A.!!$R2 3797
6 TraesCS5D01G063800 chr5A 47458012 47461962 3950 True 711.250000 1445 88.3700 1102 4121 4 chr5A.!!$R1 3019
7 TraesCS5D01G063800 chr5A 46708961 46710891 1930 False 669.000000 1046 80.0255 1102 2938 2 chr5A.!!$F2 1836
8 TraesCS5D01G063800 chr7D 45432348 45432946 598 True 479.000000 479 81.3640 2361 2951 1 chr7D.!!$R1 590
9 TraesCS5D01G063800 chr4D 485538195 485539347 1152 False 355.000000 359 80.5160 1951 2913 2 chr4D.!!$F1 962

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
501 508 0.109597 GTTGGCCTGACATTCTTGCG 60.110 55.000 3.32 0.0 0.00 4.85 F
1888 5264 0.329596 GTTGGTCATTCTGGGCTCCT 59.670 55.000 0.00 0.0 0.00 3.69 F
2613 6200 1.006102 CAAGACCAACGCCGAGTCT 60.006 57.895 0.00 0.0 42.58 3.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1995 5383 0.601558 CGGTCCCTTTCTCGAAGTCA 59.398 55.0 0.00 0.0 33.29 3.41 R
2790 6388 0.532573 TCACGCACTCCATCTCCTTC 59.467 55.0 0.00 0.0 0.00 3.46 R
3503 7561 0.666274 TGCTGTTTAGTCTCACGCGG 60.666 55.0 12.47 0.0 0.00 6.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 5.883661 CACACCTAAGTCATTTTGCTATGG 58.116 41.667 0.00 0.00 0.00 2.74
24 25 4.399303 ACACCTAAGTCATTTTGCTATGGC 59.601 41.667 0.00 0.00 39.26 4.40
42 43 0.727398 GCATCTGCCGTGTTAAGTCC 59.273 55.000 0.00 0.00 34.31 3.85
43 44 1.943968 GCATCTGCCGTGTTAAGTCCA 60.944 52.381 0.00 0.00 34.31 4.02
44 45 1.732259 CATCTGCCGTGTTAAGTCCAC 59.268 52.381 0.00 0.00 0.00 4.02
52 53 3.854286 GTGTTAAGTCCACGACAACAG 57.146 47.619 0.00 0.00 32.08 3.16
53 54 2.033151 GTGTTAAGTCCACGACAACAGC 60.033 50.000 0.00 0.00 32.08 4.40
54 55 1.191647 GTTAAGTCCACGACAACAGCG 59.808 52.381 0.00 0.00 34.60 5.18
55 56 0.669619 TAAGTCCACGACAACAGCGA 59.330 50.000 0.00 0.00 34.60 4.93
56 57 0.597637 AAGTCCACGACAACAGCGAG 60.598 55.000 0.00 0.00 34.60 5.03
57 58 2.355837 TCCACGACAACAGCGAGC 60.356 61.111 0.00 0.00 0.00 5.03
58 59 3.767230 CCACGACAACAGCGAGCG 61.767 66.667 0.00 0.00 0.00 5.03
59 60 4.415501 CACGACAACAGCGAGCGC 62.416 66.667 6.78 6.78 42.33 5.92
112 113 2.193248 GGCAGCCACCTCCATACC 59.807 66.667 6.55 0.00 0.00 2.73
118 119 2.029307 GCCACCTCCATACCTCGACC 62.029 65.000 0.00 0.00 0.00 4.79
120 121 1.486211 CACCTCCATACCTCGACCTT 58.514 55.000 0.00 0.00 0.00 3.50
127 128 1.450531 ATACCTCGACCTTACCGGCG 61.451 60.000 0.00 0.00 35.61 6.46
128 129 4.203076 CCTCGACCTTACCGGCGG 62.203 72.222 27.06 27.06 35.61 6.13
159 160 2.466982 CGAGTAGACGGCGGCTACA 61.467 63.158 43.60 18.66 40.46 2.74
164 165 0.393402 TAGACGGCGGCTACAGAAGA 60.393 55.000 20.48 0.00 0.00 2.87
165 166 1.516603 GACGGCGGCTACAGAAGAC 60.517 63.158 13.24 0.00 0.00 3.01
170 171 4.913126 GGCTACAGAAGACGGTGG 57.087 61.111 0.00 0.00 0.00 4.61
174 175 3.291101 TACAGAAGACGGTGGCGGC 62.291 63.158 0.00 0.00 0.00 6.53
208 209 6.183360 CGACGACAACCCTTATCTAGTTTTTC 60.183 42.308 0.00 0.00 0.00 2.29
210 211 7.899973 ACGACAACCCTTATCTAGTTTTTCTA 58.100 34.615 0.00 0.00 0.00 2.10
253 254 7.706159 TGTTTATATTAATGTGCTGAGCTTGG 58.294 34.615 5.83 0.00 0.00 3.61
259 260 3.931907 ATGTGCTGAGCTTGGGTAATA 57.068 42.857 5.83 0.00 0.00 0.98
264 266 3.199727 TGCTGAGCTTGGGTAATATGACA 59.800 43.478 5.83 0.00 0.00 3.58
309 315 8.915036 TGTTTTTGAGTTACCAAGGCTTATTTA 58.085 29.630 0.00 0.00 0.00 1.40
316 322 8.486942 AGTTACCAAGGCTTATTTAGGTTTTT 57.513 30.769 10.98 0.00 0.00 1.94
366 372 1.635663 GACAGTTTGGGATGCGGTCG 61.636 60.000 0.00 0.00 0.00 4.79
377 383 4.875713 GCGGTCGGCCCATTGGAT 62.876 66.667 0.00 0.00 34.80 3.41
381 387 2.440065 TCGGCCCATTGGATGCAC 60.440 61.111 3.62 0.00 0.00 4.57
390 396 2.672651 TGGATGCACCAACGGCTG 60.673 61.111 5.65 0.00 46.75 4.85
404 410 2.258013 GGCTGCACAACCGTAAGCA 61.258 57.895 0.50 0.00 36.28 3.91
408 414 0.179070 TGCACAACCGTAAGCAGACA 60.179 50.000 0.00 0.00 32.48 3.41
409 415 0.941542 GCACAACCGTAAGCAGACAA 59.058 50.000 0.00 0.00 0.00 3.18
412 418 0.511221 CAACCGTAAGCAGACAACCG 59.489 55.000 0.00 0.00 0.00 4.44
428 435 2.613506 CCGTGTCGTTTTCCTGCCC 61.614 63.158 0.00 0.00 0.00 5.36
429 436 2.613506 CGTGTCGTTTTCCTGCCCC 61.614 63.158 0.00 0.00 0.00 5.80
430 437 2.281208 TGTCGTTTTCCTGCCCCG 60.281 61.111 0.00 0.00 0.00 5.73
432 439 1.598685 GTCGTTTTCCTGCCCCGAA 60.599 57.895 0.00 0.00 0.00 4.30
433 440 1.598685 TCGTTTTCCTGCCCCGAAC 60.599 57.895 0.00 0.00 0.00 3.95
435 442 1.598685 GTTTTCCTGCCCCGAACGA 60.599 57.895 0.00 0.00 0.00 3.85
445 452 1.240256 CCCCGAACGAACAAAATCCA 58.760 50.000 0.00 0.00 0.00 3.41
446 453 1.609555 CCCCGAACGAACAAAATCCAA 59.390 47.619 0.00 0.00 0.00 3.53
448 455 3.047093 CCCGAACGAACAAAATCCAAAC 58.953 45.455 0.00 0.00 0.00 2.93
449 456 3.489398 CCCGAACGAACAAAATCCAAACA 60.489 43.478 0.00 0.00 0.00 2.83
458 465 3.860536 ACAAAATCCAAACAAAACGGACG 59.139 39.130 0.00 0.00 0.00 4.79
460 467 2.766970 ATCCAAACAAAACGGACGTG 57.233 45.000 0.00 0.00 0.00 4.49
462 469 1.197368 CCAAACAAAACGGACGTGCG 61.197 55.000 28.33 28.33 0.00 5.34
469 476 3.736732 AACGGACGTGCGTTTGGGA 62.737 57.895 36.96 0.00 0.00 4.37
470 477 2.740826 CGGACGTGCGTTTGGGAT 60.741 61.111 22.12 0.00 0.00 3.85
472 479 2.686816 GGACGTGCGTTTGGGATGG 61.687 63.158 0.00 0.00 0.00 3.51
474 481 0.671163 GACGTGCGTTTGGGATGGTA 60.671 55.000 0.00 0.00 0.00 3.25
475 482 0.952010 ACGTGCGTTTGGGATGGTAC 60.952 55.000 0.00 0.00 0.00 3.34
476 483 0.672401 CGTGCGTTTGGGATGGTACT 60.672 55.000 0.00 0.00 0.00 2.73
477 484 1.530323 GTGCGTTTGGGATGGTACTT 58.470 50.000 0.00 0.00 0.00 2.24
478 485 1.883926 GTGCGTTTGGGATGGTACTTT 59.116 47.619 0.00 0.00 0.00 2.66
479 486 1.883275 TGCGTTTGGGATGGTACTTTG 59.117 47.619 0.00 0.00 0.00 2.77
480 487 1.201414 GCGTTTGGGATGGTACTTTGG 59.799 52.381 0.00 0.00 0.00 3.28
481 488 2.785562 CGTTTGGGATGGTACTTTGGA 58.214 47.619 0.00 0.00 0.00 3.53
482 489 2.747446 CGTTTGGGATGGTACTTTGGAG 59.253 50.000 0.00 0.00 0.00 3.86
489 496 1.145571 TGGTACTTTGGAGTTGGCCT 58.854 50.000 3.32 0.00 37.33 5.19
501 508 0.109597 GTTGGCCTGACATTCTTGCG 60.110 55.000 3.32 0.00 0.00 4.85
524 531 5.618640 CGCCAAATCCTTTCTTGAAGAGAAG 60.619 44.000 0.00 3.07 44.80 2.85
525 532 5.707931 CCAAATCCTTTCTTGAAGAGAAGC 58.292 41.667 0.00 0.00 44.80 3.86
544 552 1.334149 GCAAACGACAGACTCTTTGCC 60.334 52.381 4.93 0.00 41.67 4.52
548 556 1.347817 CGACAGACTCTTTGCCGCTC 61.348 60.000 0.00 0.00 0.00 5.03
645 657 0.760567 TCGGCCAGATCCAGCAGTAT 60.761 55.000 2.24 0.00 0.00 2.12
649 661 3.195610 CGGCCAGATCCAGCAGTATTATA 59.804 47.826 2.24 0.00 0.00 0.98
650 662 4.141846 CGGCCAGATCCAGCAGTATTATAT 60.142 45.833 2.24 0.00 0.00 0.86
652 664 6.183347 GGCCAGATCCAGCAGTATTATATTT 58.817 40.000 0.00 0.00 0.00 1.40
653 665 6.094603 GGCCAGATCCAGCAGTATTATATTTG 59.905 42.308 0.00 0.00 0.00 2.32
660 675 9.935241 ATCCAGCAGTATTATATTTGTAGTCTG 57.065 33.333 0.00 0.00 0.00 3.51
661 676 7.872993 TCCAGCAGTATTATATTTGTAGTCTGC 59.127 37.037 0.00 0.00 43.71 4.26
671 686 9.713713 TTATATTTGTAGTCTGCACACAGTAAA 57.286 29.630 0.00 0.00 44.77 2.01
708 724 1.959042 ATGTCGAACATGCCCTCATC 58.041 50.000 0.00 0.00 37.45 2.92
747 3910 2.487918 AACTTGCGTGCAGGTTCAA 58.512 47.368 15.52 3.97 41.38 2.69
778 3979 1.331756 GATTGGTCGGTGCATCATCAC 59.668 52.381 0.00 0.00 36.28 3.06
822 4023 1.165270 CGGTCCACAGTCCAAATTCC 58.835 55.000 0.00 0.00 0.00 3.01
842 4044 7.707624 ATTCCATTTCATCTGCTTAAGACAA 57.292 32.000 6.67 0.00 37.88 3.18
844 4046 7.707624 TCCATTTCATCTGCTTAAGACAAAT 57.292 32.000 6.67 0.00 37.88 2.32
903 4106 3.365364 CGCCAATCTTGACTTTCAACCTC 60.365 47.826 0.00 0.00 32.21 3.85
930 4133 0.517316 AAATTCTGCAACCGAGACGC 59.483 50.000 0.00 0.00 0.00 5.19
948 4151 2.913463 CCAGAGAGAGGCAGGTGAT 58.087 57.895 0.00 0.00 0.00 3.06
957 4160 3.387962 AGAGGCAGGTGATTGATTAGGA 58.612 45.455 0.00 0.00 0.00 2.94
960 4163 3.390639 AGGCAGGTGATTGATTAGGAGAG 59.609 47.826 0.00 0.00 0.00 3.20
961 4164 3.389329 GGCAGGTGATTGATTAGGAGAGA 59.611 47.826 0.00 0.00 0.00 3.10
962 4165 4.141620 GGCAGGTGATTGATTAGGAGAGAA 60.142 45.833 0.00 0.00 0.00 2.87
963 4166 5.431765 GCAGGTGATTGATTAGGAGAGAAA 58.568 41.667 0.00 0.00 0.00 2.52
964 4167 5.526846 GCAGGTGATTGATTAGGAGAGAAAG 59.473 44.000 0.00 0.00 0.00 2.62
966 4169 5.190528 AGGTGATTGATTAGGAGAGAAAGCA 59.809 40.000 0.00 0.00 0.00 3.91
967 4170 5.882557 GGTGATTGATTAGGAGAGAAAGCAA 59.117 40.000 0.00 0.00 35.67 3.91
968 4171 6.545298 GGTGATTGATTAGGAGAGAAAGCAAT 59.455 38.462 0.00 0.00 42.57 3.56
969 4172 7.067981 GGTGATTGATTAGGAGAGAAAGCAATT 59.932 37.037 0.77 0.00 40.65 2.32
970 4173 8.465201 GTGATTGATTAGGAGAGAAAGCAATTT 58.535 33.333 0.77 0.00 40.65 1.82
972 4175 8.585471 ATTGATTAGGAGAGAAAGCAATTTGA 57.415 30.769 0.00 0.00 38.23 2.69
973 4176 8.585471 TTGATTAGGAGAGAAAGCAATTTGAT 57.415 30.769 0.00 0.00 0.00 2.57
974 4177 8.218338 TGATTAGGAGAGAAAGCAATTTGATC 57.782 34.615 0.00 0.00 0.00 2.92
975 4178 6.668541 TTAGGAGAGAAAGCAATTTGATCG 57.331 37.500 0.00 0.00 0.00 3.69
979 4184 4.326826 AGAGAAAGCAATTTGATCGTCCA 58.673 39.130 0.00 0.00 0.00 4.02
986 4191 1.128200 ATTTGATCGTCCATCCCCGA 58.872 50.000 0.00 0.00 37.51 5.14
1435 4646 1.693083 CGACCTCGCCGTGAATTTCC 61.693 60.000 0.00 0.00 0.00 3.13
1651 4865 1.837051 ACCAGGTGCCTTGTCTCGA 60.837 57.895 0.00 0.00 0.00 4.04
1764 4978 2.765807 ATCACCCTCCCGCCTGAG 60.766 66.667 0.00 0.00 0.00 3.35
1888 5264 0.329596 GTTGGTCATTCTGGGCTCCT 59.670 55.000 0.00 0.00 0.00 3.69
1943 5331 1.743252 GACAGCAGGAAAGGGAGCG 60.743 63.158 0.00 0.00 0.00 5.03
1995 5383 2.919043 GACCCGGCCATGGAAGAT 59.081 61.111 18.40 0.00 0.00 2.40
2117 5505 1.136984 GCTCGGTGTACAGAGGACG 59.863 63.158 12.58 6.03 38.38 4.79
2136 5524 2.227388 ACGCCTCAAAGAAATGAAGCTG 59.773 45.455 0.00 0.00 35.15 4.24
2394 5981 3.007920 CTGGGACTGGGCTCTGCT 61.008 66.667 0.00 0.00 0.00 4.24
2532 6119 4.530857 GTCGACCATGGCCGAGGG 62.531 72.222 24.36 11.43 35.31 4.30
2613 6200 1.006102 CAAGACCAACGCCGAGTCT 60.006 57.895 0.00 0.00 42.58 3.24
2785 6383 1.078214 CGGCTGCAGGGAGAATTCA 60.078 57.895 17.12 0.00 0.00 2.57
2790 6388 0.322456 TGCAGGGAGAATTCAACGGG 60.322 55.000 8.44 0.00 0.00 5.28
3018 6618 3.277715 TGTCACATCTTCAGTTGCAACA 58.722 40.909 30.11 10.66 0.00 3.33
3077 6692 1.812922 GCGTCAGCAGCAGTAGCAT 60.813 57.895 0.00 0.00 45.49 3.79
3139 6754 8.618677 TGAAATGAGAAGCAGATCAACATATTC 58.381 33.333 0.00 0.00 0.00 1.75
3142 6757 7.783090 TGAGAAGCAGATCAACATATTCTTC 57.217 36.000 0.00 0.00 0.00 2.87
3143 6758 6.478016 TGAGAAGCAGATCAACATATTCTTCG 59.522 38.462 0.00 0.00 35.26 3.79
3154 6781 8.661352 TCAACATATTCTTCGCAGATGATTTA 57.339 30.769 0.00 0.00 40.40 1.40
3159 6786 6.841443 ATTCTTCGCAGATGATTTAGACAG 57.159 37.500 0.00 0.00 40.40 3.51
3187 6814 6.735130 TGTACAGGTGTATCGTAGATTCATG 58.265 40.000 0.00 0.00 45.12 3.07
3188 6815 6.544564 TGTACAGGTGTATCGTAGATTCATGA 59.455 38.462 0.00 0.00 45.12 3.07
3215 7189 4.483311 ACAGAATTCGGTTCGTAGAAGTC 58.517 43.478 5.32 0.00 45.90 3.01
3474 7532 2.814269 TCATACATCGCTGAGAAGTGC 58.186 47.619 0.00 0.00 32.50 4.40
3620 7999 2.297701 GCGATGAAGGCCCTAAAATGA 58.702 47.619 0.00 0.00 0.00 2.57
3622 8001 2.880890 CGATGAAGGCCCTAAAATGAGG 59.119 50.000 0.00 0.00 36.23 3.86
3624 8003 3.652057 TGAAGGCCCTAAAATGAGGAG 57.348 47.619 0.00 0.00 39.15 3.69
3629 8008 2.508300 GGCCCTAAAATGAGGAGGTACA 59.492 50.000 0.00 0.00 39.15 2.90
3643 8022 5.003804 AGGAGGTACATTTTAGCAACACAG 58.996 41.667 0.00 0.00 0.00 3.66
3645 8024 3.506067 AGGTACATTTTAGCAACACAGCC 59.494 43.478 0.00 0.00 34.23 4.85
3686 8553 3.010472 TCTTGCAATCTCAAATCCCAGGA 59.990 43.478 0.00 0.00 0.00 3.86
3701 8568 1.893137 CCAGGAAAACCTACCAAAGCC 59.107 52.381 0.00 0.00 0.00 4.35
3771 8638 8.986847 GTTGATCAAGTGATATACCTGATTCAG 58.013 37.037 8.80 6.70 39.87 3.02
3785 8659 4.136796 CTGATTCAGAACCACACCAGAAA 58.863 43.478 8.00 0.00 32.44 2.52
3846 8720 8.345565 GGCCATAGTTCATTTCTACACTAAATG 58.654 37.037 0.00 0.00 42.89 2.32
3847 8721 7.857885 GCCATAGTTCATTTCTACACTAAATGC 59.142 37.037 0.00 0.00 41.82 3.56
3874 8749 6.862608 CACTAAAACAAGCATAAACATGAGCA 59.137 34.615 0.00 0.00 0.00 4.26
3878 8753 2.133281 AGCATAAACATGAGCAGCCA 57.867 45.000 0.00 0.00 0.00 4.75
3890 8765 1.672356 GCAGCCAGGTACCACACAG 60.672 63.158 15.94 1.86 0.00 3.66
3932 8807 9.985730 ACATTTGAAGAAAATCATCAAGCTTTA 57.014 25.926 0.00 0.00 35.81 1.85
3976 9659 6.183360 GCTATGCTAACATTTGGAATGACACT 60.183 38.462 7.59 0.00 37.74 3.55
4004 9687 5.964958 AGTTTAGCAGTTAACATGCACAT 57.035 34.783 23.12 11.49 46.31 3.21
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.677091 GCCATAGCAAAATGACTTAGGTGTG 60.677 44.000 0.00 0.00 39.53 3.82
1 2 4.399303 GCCATAGCAAAATGACTTAGGTGT 59.601 41.667 0.00 0.00 39.53 4.16
2 3 4.925068 GCCATAGCAAAATGACTTAGGTG 58.075 43.478 0.00 0.00 39.53 4.00
23 24 0.727398 GGACTTAACACGGCAGATGC 59.273 55.000 0.00 0.00 41.14 3.91
24 25 1.732259 GTGGACTTAACACGGCAGATG 59.268 52.381 0.00 0.00 0.00 2.90
25 26 2.094762 GTGGACTTAACACGGCAGAT 57.905 50.000 0.00 0.00 0.00 2.90
26 27 3.599412 GTGGACTTAACACGGCAGA 57.401 52.632 0.00 0.00 0.00 4.26
32 33 2.033151 GCTGTTGTCGTGGACTTAACAC 60.033 50.000 0.00 0.00 29.67 3.32
33 34 2.206750 GCTGTTGTCGTGGACTTAACA 58.793 47.619 0.00 0.00 31.16 2.41
34 35 1.191647 CGCTGTTGTCGTGGACTTAAC 59.808 52.381 0.00 0.00 33.15 2.01
35 36 1.067364 TCGCTGTTGTCGTGGACTTAA 59.933 47.619 0.00 0.00 33.15 1.85
36 37 0.669619 TCGCTGTTGTCGTGGACTTA 59.330 50.000 0.00 0.00 33.15 2.24
37 38 0.597637 CTCGCTGTTGTCGTGGACTT 60.598 55.000 0.00 0.00 33.15 3.01
38 39 1.007271 CTCGCTGTTGTCGTGGACT 60.007 57.895 0.00 0.00 33.15 3.85
39 40 2.658707 GCTCGCTGTTGTCGTGGAC 61.659 63.158 0.00 0.00 0.00 4.02
40 41 2.355837 GCTCGCTGTTGTCGTGGA 60.356 61.111 0.00 0.00 0.00 4.02
41 42 3.767230 CGCTCGCTGTTGTCGTGG 61.767 66.667 0.00 0.00 0.00 4.94
42 43 4.415501 GCGCTCGCTGTTGTCGTG 62.416 66.667 0.00 0.00 38.26 4.35
72 73 4.802051 TGAGATGGCGGCCCTTGC 62.802 66.667 17.97 4.31 0.00 4.01
73 74 2.825836 GTGAGATGGCGGCCCTTG 60.826 66.667 17.97 0.00 0.00 3.61
74 75 4.115199 GGTGAGATGGCGGCCCTT 62.115 66.667 17.97 3.53 0.00 3.95
87 88 3.640407 GGTGGCTGCCAGAGGTGA 61.640 66.667 24.10 0.00 32.34 4.02
99 100 1.442148 GTCGAGGTATGGAGGTGGC 59.558 63.158 0.00 0.00 0.00 5.01
112 113 4.867599 GCCGCCGGTAAGGTCGAG 62.868 72.222 4.45 0.00 43.70 4.04
128 129 2.906639 CTACTCGTCGTCGTCGTCGC 62.907 65.000 15.28 2.24 44.86 5.19
141 142 2.327244 GTAGCCGCCGTCTACTCG 59.673 66.667 0.00 0.00 34.93 4.18
142 143 1.094073 TCTGTAGCCGCCGTCTACTC 61.094 60.000 6.87 0.00 37.78 2.59
175 176 4.059459 GTTGTCGTCGCCGCAGTG 62.059 66.667 0.00 0.00 0.00 3.66
179 180 3.919973 TAAGGGTTGTCGTCGCCGC 62.920 63.158 0.00 0.00 0.00 6.53
180 181 1.143969 GATAAGGGTTGTCGTCGCCG 61.144 60.000 0.00 0.00 0.00 6.46
181 182 0.175073 AGATAAGGGTTGTCGTCGCC 59.825 55.000 0.00 0.00 0.00 5.54
182 183 2.098770 ACTAGATAAGGGTTGTCGTCGC 59.901 50.000 0.00 0.00 0.00 5.19
183 184 4.367386 AACTAGATAAGGGTTGTCGTCG 57.633 45.455 0.00 0.00 0.00 5.12
184 185 6.872547 AGAAAAACTAGATAAGGGTTGTCGTC 59.127 38.462 0.00 0.00 0.00 4.20
185 186 6.766429 AGAAAAACTAGATAAGGGTTGTCGT 58.234 36.000 0.00 0.00 0.00 4.34
186 187 8.767478 TTAGAAAAACTAGATAAGGGTTGTCG 57.233 34.615 0.00 0.00 32.30 4.35
244 245 6.949352 AAATGTCATATTACCCAAGCTCAG 57.051 37.500 0.00 0.00 0.00 3.35
290 292 7.698506 AAACCTAAATAAGCCTTGGTAACTC 57.301 36.000 0.00 0.00 37.61 3.01
291 293 8.486942 AAAAACCTAAATAAGCCTTGGTAACT 57.513 30.769 0.00 0.00 37.61 2.24
316 322 7.804843 TTCAGACGTGAAATTAAACCCTAAA 57.195 32.000 0.00 0.00 39.85 1.85
366 372 2.364056 TGGTGCATCCAATGGGCC 60.364 61.111 0.00 0.00 44.12 5.80
386 392 2.187599 CTGCTTACGGTTGTGCAGCC 62.188 60.000 13.66 0.00 44.72 4.85
387 393 1.207593 CTGCTTACGGTTGTGCAGC 59.792 57.895 13.66 0.00 44.72 5.25
389 395 0.179070 TGTCTGCTTACGGTTGTGCA 60.179 50.000 0.00 0.00 0.00 4.57
390 396 0.941542 TTGTCTGCTTACGGTTGTGC 59.058 50.000 0.00 0.00 0.00 4.57
394 400 0.105408 ACGGTTGTCTGCTTACGGTT 59.895 50.000 0.00 0.00 0.00 4.44
406 412 1.011333 CAGGAAAACGACACGGTTGT 58.989 50.000 0.00 0.00 36.69 3.32
408 414 1.441732 GGCAGGAAAACGACACGGTT 61.442 55.000 0.00 0.00 38.92 4.44
409 415 1.890510 GGCAGGAAAACGACACGGT 60.891 57.895 0.00 0.00 0.00 4.83
412 418 2.613506 CGGGGCAGGAAAACGACAC 61.614 63.158 0.00 0.00 0.00 3.67
417 423 1.167781 TTCGTTCGGGGCAGGAAAAC 61.168 55.000 0.00 0.00 0.00 2.43
428 435 3.696898 TGTTTGGATTTTGTTCGTTCGG 58.303 40.909 0.00 0.00 0.00 4.30
429 436 5.688348 TTTGTTTGGATTTTGTTCGTTCG 57.312 34.783 0.00 0.00 0.00 3.95
430 437 5.949219 CGTTTTGTTTGGATTTTGTTCGTTC 59.051 36.000 0.00 0.00 0.00 3.95
432 439 4.327627 CCGTTTTGTTTGGATTTTGTTCGT 59.672 37.500 0.00 0.00 0.00 3.85
433 440 4.563184 TCCGTTTTGTTTGGATTTTGTTCG 59.437 37.500 0.00 0.00 0.00 3.95
435 442 4.327627 CGTCCGTTTTGTTTGGATTTTGTT 59.672 37.500 0.00 0.00 33.63 2.83
445 452 1.795507 ACGCACGTCCGTTTTGTTT 59.204 47.368 0.00 0.00 38.47 2.83
446 453 3.488573 ACGCACGTCCGTTTTGTT 58.511 50.000 0.00 0.00 38.47 2.83
458 465 1.530323 AAGTACCATCCCAAACGCAC 58.470 50.000 0.00 0.00 0.00 5.34
460 467 1.201414 CCAAAGTACCATCCCAAACGC 59.799 52.381 0.00 0.00 0.00 4.84
462 469 3.763057 ACTCCAAAGTACCATCCCAAAC 58.237 45.455 0.00 0.00 32.59 2.93
469 476 1.710809 AGGCCAACTCCAAAGTACCAT 59.289 47.619 5.01 0.00 33.48 3.55
470 477 1.145571 AGGCCAACTCCAAAGTACCA 58.854 50.000 5.01 0.00 33.48 3.25
472 479 2.152016 GTCAGGCCAACTCCAAAGTAC 58.848 52.381 5.01 0.00 33.48 2.73
474 481 0.550914 TGTCAGGCCAACTCCAAAGT 59.449 50.000 5.01 0.00 37.32 2.66
475 482 1.915141 ATGTCAGGCCAACTCCAAAG 58.085 50.000 5.01 0.00 0.00 2.77
476 483 2.158475 AGAATGTCAGGCCAACTCCAAA 60.158 45.455 5.01 0.00 0.00 3.28
477 484 1.425066 AGAATGTCAGGCCAACTCCAA 59.575 47.619 5.01 0.00 0.00 3.53
478 485 1.067295 AGAATGTCAGGCCAACTCCA 58.933 50.000 5.01 0.00 0.00 3.86
479 486 1.815003 CAAGAATGTCAGGCCAACTCC 59.185 52.381 5.01 0.00 0.00 3.85
480 487 1.200948 GCAAGAATGTCAGGCCAACTC 59.799 52.381 5.01 0.00 0.00 3.01
481 488 1.251251 GCAAGAATGTCAGGCCAACT 58.749 50.000 5.01 0.00 0.00 3.16
482 489 0.109597 CGCAAGAATGTCAGGCCAAC 60.110 55.000 5.01 2.88 43.02 3.77
489 496 1.202114 GGATTTGGCGCAAGAATGTCA 59.798 47.619 10.83 0.00 43.02 3.58
501 508 5.707931 CTTCTCTTCAAGAAAGGATTTGGC 58.292 41.667 0.00 0.00 43.39 4.52
524 531 2.024176 GCAAAGAGTCTGTCGTTTGC 57.976 50.000 9.99 9.99 45.61 3.68
525 532 1.070577 CGGCAAAGAGTCTGTCGTTTG 60.071 52.381 0.00 0.00 37.14 2.93
544 552 2.074576 CTCTGCCATCCATATTGAGCG 58.925 52.381 0.00 0.00 0.00 5.03
548 556 1.802960 GCGACTCTGCCATCCATATTG 59.197 52.381 0.00 0.00 0.00 1.90
594 602 4.067896 AGACTGCACAGTTTAGTGATTGG 58.932 43.478 4.52 0.00 42.66 3.16
596 604 6.015010 AGAGTAGACTGCACAGTTTAGTGATT 60.015 38.462 12.06 0.00 42.66 2.57
598 606 4.827835 AGAGTAGACTGCACAGTTTAGTGA 59.172 41.667 12.06 0.00 42.66 3.41
604 612 5.563085 CGAAAGTAGAGTAGACTGCACAGTT 60.563 44.000 4.52 0.00 42.66 3.16
645 657 9.713713 TTTACTGTGTGCAGACTACAAATATAA 57.286 29.630 15.76 0.37 45.28 0.98
649 661 6.238648 GGTTTTACTGTGTGCAGACTACAAAT 60.239 38.462 15.76 0.00 45.28 2.32
650 662 5.065474 GGTTTTACTGTGTGCAGACTACAAA 59.935 40.000 15.76 9.02 45.28 2.83
652 664 4.124238 GGTTTTACTGTGTGCAGACTACA 58.876 43.478 15.76 4.37 45.28 2.74
653 665 4.025145 GTGGTTTTACTGTGTGCAGACTAC 60.025 45.833 15.76 3.98 45.28 2.73
660 675 0.317519 GCCGTGGTTTTACTGTGTGC 60.318 55.000 0.00 0.00 0.00 4.57
661 676 1.305201 AGCCGTGGTTTTACTGTGTG 58.695 50.000 0.00 0.00 0.00 3.82
671 686 0.467290 ATGTGGTCAAAGCCGTGGTT 60.467 50.000 0.00 0.00 0.00 3.67
697 712 5.826737 AGTTCAGATAAAAGATGAGGGCATG 59.173 40.000 0.00 0.00 34.11 4.06
698 713 6.011122 AGTTCAGATAAAAGATGAGGGCAT 57.989 37.500 0.00 0.00 37.47 4.40
747 3910 1.405526 CCGACCAATCCTTGTGATCGT 60.406 52.381 0.00 0.00 31.61 3.73
778 3979 8.376203 CGCGTCAAATCATCCTATCTATTTTAG 58.624 37.037 0.00 0.00 0.00 1.85
822 4023 9.635520 AAGAATTTGTCTTAAGCAGATGAAATG 57.364 29.630 0.00 0.00 45.18 2.32
842 4044 7.017056 AGGTTATATCCTCTGCTGCTAAGAATT 59.983 37.037 0.00 0.00 31.32 2.17
844 4046 5.841237 AGGTTATATCCTCTGCTGCTAAGAA 59.159 40.000 0.00 0.00 31.32 2.52
871 4073 3.191371 GTCAAGATTGGCGACTTGGAATT 59.809 43.478 14.57 0.00 42.27 2.17
903 4106 3.253188 TCGGTTGCAGAATTTCCAAGAAG 59.747 43.478 0.00 0.00 0.00 2.85
930 4133 1.134461 CAATCACCTGCCTCTCTCTGG 60.134 57.143 0.00 0.00 0.00 3.86
948 4151 8.585471 ATCAAATTGCTTTCTCTCCTAATCAA 57.415 30.769 0.00 0.00 0.00 2.57
957 4160 4.326826 TGGACGATCAAATTGCTTTCTCT 58.673 39.130 0.00 0.00 0.00 3.10
960 4163 4.354587 GGATGGACGATCAAATTGCTTTC 58.645 43.478 0.00 0.00 31.91 2.62
961 4164 3.131046 GGGATGGACGATCAAATTGCTTT 59.869 43.478 0.00 0.00 31.91 3.51
962 4165 2.689983 GGGATGGACGATCAAATTGCTT 59.310 45.455 0.00 0.00 31.91 3.91
963 4166 2.301346 GGGATGGACGATCAAATTGCT 58.699 47.619 0.00 0.00 31.91 3.91
964 4167 1.338020 GGGGATGGACGATCAAATTGC 59.662 52.381 0.00 0.00 31.91 3.56
966 4169 1.488812 TCGGGGATGGACGATCAAATT 59.511 47.619 0.00 0.00 33.69 1.82
967 4170 1.128200 TCGGGGATGGACGATCAAAT 58.872 50.000 0.00 0.00 33.69 2.32
968 4171 0.177141 GTCGGGGATGGACGATCAAA 59.823 55.000 0.00 0.00 41.53 2.69
969 4172 1.682451 GGTCGGGGATGGACGATCAA 61.682 60.000 0.00 0.00 41.53 2.57
970 4173 2.131709 GGTCGGGGATGGACGATCA 61.132 63.158 0.00 0.00 41.53 2.92
972 4175 3.224324 CGGTCGGGGATGGACGAT 61.224 66.667 0.00 0.00 41.53 3.73
986 4191 3.043999 GCCATTGAGGGTAGCCGGT 62.044 63.158 1.90 0.00 38.09 5.28
996 4201 3.204827 CGCCGGGAAGCCATTGAG 61.205 66.667 2.18 0.00 0.00 3.02
1107 4312 3.672511 CGTCGGTGTAGTTATCAGCAGTT 60.673 47.826 0.00 0.00 33.61 3.16
1236 4441 1.985116 GAGGCCGAAGACCTGGTCT 60.985 63.158 23.49 23.49 45.64 3.85
1281 4486 4.988598 CACTCCCGGCACTGCGTT 62.989 66.667 0.00 0.00 0.00 4.84
1580 4794 2.428187 CCAGCCCGTACACCAACA 59.572 61.111 0.00 0.00 0.00 3.33
1582 4796 4.690719 CGCCAGCCCGTACACCAA 62.691 66.667 0.00 0.00 0.00 3.67
1799 5067 3.227792 GACGATGATCCTCCCGGCC 62.228 68.421 0.00 0.00 0.00 6.13
1888 5264 2.302260 CCGTAGAGAGAGGCAGATCAA 58.698 52.381 0.00 0.00 0.00 2.57
1943 5331 3.991725 CTGCCCTCTTCCAGCTGCC 62.992 68.421 8.66 0.00 0.00 4.85
1995 5383 0.601558 CGGTCCCTTTCTCGAAGTCA 59.398 55.000 0.00 0.00 33.29 3.41
2117 5505 2.821969 TCCAGCTTCATTTCTTTGAGGC 59.178 45.455 0.80 0.80 46.00 4.70
2367 5954 1.142748 CAGTCCCAGCACGATCTCC 59.857 63.158 0.00 0.00 0.00 3.71
2613 6200 1.816537 GCCGAGGCTGTAGACATCA 59.183 57.895 6.90 0.00 38.26 3.07
2785 6383 0.905357 CACTCCATCTCCTTCCCGTT 59.095 55.000 0.00 0.00 0.00 4.44
2790 6388 0.532573 TCACGCACTCCATCTCCTTC 59.467 55.000 0.00 0.00 0.00 3.46
2999 6599 2.880268 CCTGTTGCAACTGAAGATGTGA 59.120 45.455 31.09 8.18 0.00 3.58
3074 6689 0.654683 CGAGCTTGCTGTTAGGATGC 59.345 55.000 0.00 0.00 37.06 3.91
3077 6692 1.067565 CAGTCGAGCTTGCTGTTAGGA 60.068 52.381 14.03 0.00 0.00 2.94
3139 6754 6.414408 AAACTGTCTAAATCATCTGCGAAG 57.586 37.500 0.00 0.00 0.00 3.79
3142 6757 5.931532 ACAAAACTGTCTAAATCATCTGCG 58.068 37.500 0.00 0.00 0.00 5.18
3143 6758 7.806690 TGTACAAAACTGTCTAAATCATCTGC 58.193 34.615 0.00 0.00 0.00 4.26
3154 6781 5.221382 ACGATACACCTGTACAAAACTGTCT 60.221 40.000 0.00 0.00 32.72 3.41
3159 6786 7.543172 TGAATCTACGATACACCTGTACAAAAC 59.457 37.037 0.00 0.00 32.72 2.43
3187 6814 8.792831 TTCTACGAACCGAATTCTGTATTATC 57.207 34.615 2.71 0.00 34.88 1.75
3188 6815 8.411683 ACTTCTACGAACCGAATTCTGTATTAT 58.588 33.333 2.71 0.00 34.88 1.28
3296 7352 4.645535 TCCACCTTTCTGTGATCTCTTTG 58.354 43.478 0.00 0.00 38.55 2.77
3474 7532 2.629051 GAGGACCATCTTTTGTACCCG 58.371 52.381 0.00 0.00 0.00 5.28
3502 7560 1.956620 GCTGTTTAGTCTCACGCGGC 61.957 60.000 12.47 0.00 0.00 6.53
3503 7561 0.666274 TGCTGTTTAGTCTCACGCGG 60.666 55.000 12.47 0.00 0.00 6.46
3620 7999 4.980573 TGTGTTGCTAAAATGTACCTCCT 58.019 39.130 0.00 0.00 0.00 3.69
3622 8001 4.379499 GGCTGTGTTGCTAAAATGTACCTC 60.379 45.833 0.00 0.00 0.00 3.85
3624 8003 3.506067 AGGCTGTGTTGCTAAAATGTACC 59.494 43.478 0.00 0.00 0.00 3.34
3629 8008 3.420893 TGCTAGGCTGTGTTGCTAAAAT 58.579 40.909 0.00 0.00 0.00 1.82
3643 8022 4.811557 AGATTTACTTTGACGATGCTAGGC 59.188 41.667 0.00 0.00 0.00 3.93
3645 8024 6.183360 TGCAAGATTTACTTTGACGATGCTAG 60.183 38.462 0.00 0.00 36.61 3.42
3686 8553 4.896482 TGTGTATTGGCTTTGGTAGGTTTT 59.104 37.500 0.00 0.00 0.00 2.43
3771 8638 8.710835 TTTTTCTAATTTTTCTGGTGTGGTTC 57.289 30.769 0.00 0.00 0.00 3.62
3846 8720 4.877282 TGTTTATGCTTGTTTTAGTGGGC 58.123 39.130 0.00 0.00 0.00 5.36
3847 8721 6.686630 TCATGTTTATGCTTGTTTTAGTGGG 58.313 36.000 0.00 0.00 34.21 4.61
3874 8749 1.362224 ATTCTGTGTGGTACCTGGCT 58.638 50.000 14.36 0.00 0.00 4.75
3878 8753 7.283127 CAGCATAAATAATTCTGTGTGGTACCT 59.717 37.037 14.36 0.00 0.00 3.08
3920 8795 7.503521 TGTGTGTTATTGTAAAGCTTGATGA 57.496 32.000 0.00 0.00 0.00 2.92
3932 8807 7.554118 AGCATAGCTTCTTATGTGTGTTATTGT 59.446 33.333 0.00 0.00 33.89 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.