Multiple sequence alignment - TraesCS5D01G063200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G063200 chr5D 100.000 2480 0 0 1 2480 58687230 58684751 0.000000e+00 4580.0
1 TraesCS5D01G063200 chr5D 85.240 603 45 29 890 1483 462040809 462040242 4.600000e-162 580.0
2 TraesCS5D01G063200 chr5A 86.575 1594 120 44 86 1648 47129226 47127696 0.000000e+00 1672.0
3 TraesCS5D01G063200 chr5A 84.521 730 65 34 764 1483 582107892 582107201 0.000000e+00 678.0
4 TraesCS5D01G063200 chr5A 90.776 477 26 7 2009 2480 47127632 47127169 2.710000e-174 621.0
5 TraesCS5D01G063200 chr5B 94.439 1007 36 12 655 1652 72259107 72258112 0.000000e+00 1531.0
6 TraesCS5D01G063200 chr5B 90.430 1139 59 18 445 1557 63851508 63850394 0.000000e+00 1454.0
7 TraesCS5D01G063200 chr5B 95.368 475 12 4 1182 1652 72821083 72821551 0.000000e+00 747.0
8 TraesCS5D01G063200 chr5B 88.588 517 36 8 1975 2480 63850236 63849732 7.590000e-170 606.0
9 TraesCS5D01G063200 chr5B 84.348 345 47 7 66 408 63851848 63851509 5.110000e-87 331.0
10 TraesCS5D01G063200 chr5B 95.522 67 3 0 1585 1651 63850400 63850334 9.380000e-20 108.0
11 TraesCS5D01G063200 chr5B 100.000 31 0 0 2263 2293 12320520 12320550 9.580000e-05 58.4
12 TraesCS5D01G063200 chr5B 100.000 30 0 0 2263 2292 548667215 548667244 3.450000e-04 56.5
13 TraesCS5D01G063200 chr1A 85.896 865 58 35 658 1501 401227654 401226833 0.000000e+00 863.0
14 TraesCS5D01G063200 chr1A 86.596 664 54 19 831 1481 546216297 546216938 0.000000e+00 701.0
15 TraesCS5D01G063200 chr1A 94.432 449 20 3 1034 1481 542168012 542168456 0.000000e+00 686.0
16 TraesCS5D01G063200 chr1A 84.118 170 17 6 2314 2480 344188790 344188628 3.300000e-34 156.0
17 TraesCS5D01G063200 chr1A 82.716 162 18 7 2321 2480 400956972 400957125 4.300000e-28 135.0
18 TraesCS5D01G063200 chr1B 87.764 662 51 16 832 1489 344375803 344375168 0.000000e+00 747.0
19 TraesCS5D01G063200 chr1B 94.004 467 25 2 1034 1500 620551691 620552154 0.000000e+00 704.0
20 TraesCS5D01G063200 chr1B 96.181 419 16 0 1063 1481 621059389 621059807 0.000000e+00 686.0
21 TraesCS5D01G063200 chr1B 93.527 448 26 2 1034 1481 620786171 620786615 0.000000e+00 664.0
22 TraesCS5D01G063200 chr2A 79.310 348 54 14 1928 2265 620694554 620694893 6.900000e-56 228.0
23 TraesCS5D01G063200 chr1D 84.706 170 16 6 2314 2480 271836566 271836404 7.100000e-36 161.0
24 TraesCS5D01G063200 chr1D 82.840 169 20 4 2314 2480 321709524 321709363 2.570000e-30 143.0
25 TraesCS5D01G063200 chrUn 82.895 152 21 5 2115 2265 249352750 249352603 5.570000e-27 132.0
26 TraesCS5D01G063200 chrUn 82.895 152 21 5 2115 2265 249357118 249356971 5.570000e-27 132.0
27 TraesCS5D01G063200 chrUn 82.895 152 21 5 2115 2265 249361486 249361339 5.570000e-27 132.0
28 TraesCS5D01G063200 chrUn 83.562 146 19 5 2115 2259 249943960 249944101 5.570000e-27 132.0
29 TraesCS5D01G063200 chrUn 83.562 146 19 5 2115 2259 249948328 249948469 5.570000e-27 132.0
30 TraesCS5D01G063200 chrUn 83.562 146 19 5 2115 2259 249952696 249952837 5.570000e-27 132.0
31 TraesCS5D01G063200 chrUn 83.562 146 19 5 2115 2259 251167554 251167695 5.570000e-27 132.0
32 TraesCS5D01G063200 chrUn 83.562 146 19 5 2115 2259 251171922 251172063 5.570000e-27 132.0
33 TraesCS5D01G063200 chrUn 83.562 146 19 5 2115 2259 251176290 251176431 5.570000e-27 132.0
34 TraesCS5D01G063200 chr7A 93.023 43 3 0 1001 1043 680264522 680264480 2.060000e-06 63.9
35 TraesCS5D01G063200 chr7D 83.099 71 5 3 2405 2475 58207067 58207004 9.580000e-05 58.4
36 TraesCS5D01G063200 chr6B 100.000 30 0 0 2263 2292 31522799 31522770 3.450000e-04 56.5
37 TraesCS5D01G063200 chr3B 100.000 30 0 0 2263 2292 354641203 354641174 3.450000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G063200 chr5D 58684751 58687230 2479 True 4580.00 4580 100.0000 1 2480 1 chr5D.!!$R1 2479
1 TraesCS5D01G063200 chr5D 462040242 462040809 567 True 580.00 580 85.2400 890 1483 1 chr5D.!!$R2 593
2 TraesCS5D01G063200 chr5A 47127169 47129226 2057 True 1146.50 1672 88.6755 86 2480 2 chr5A.!!$R2 2394
3 TraesCS5D01G063200 chr5A 582107201 582107892 691 True 678.00 678 84.5210 764 1483 1 chr5A.!!$R1 719
4 TraesCS5D01G063200 chr5B 72258112 72259107 995 True 1531.00 1531 94.4390 655 1652 1 chr5B.!!$R1 997
5 TraesCS5D01G063200 chr5B 63849732 63851848 2116 True 624.75 1454 89.7220 66 2480 4 chr5B.!!$R2 2414
6 TraesCS5D01G063200 chr1A 401226833 401227654 821 True 863.00 863 85.8960 658 1501 1 chr1A.!!$R2 843
7 TraesCS5D01G063200 chr1A 546216297 546216938 641 False 701.00 701 86.5960 831 1481 1 chr1A.!!$F3 650
8 TraesCS5D01G063200 chr1B 344375168 344375803 635 True 747.00 747 87.7640 832 1489 1 chr1B.!!$R1 657

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
45 46 0.034477 GGTATGGTTGGGTCAGGGTG 60.034 60.0 0.0 0.0 0.0 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1742 1899 0.036105 TGTGAGCGCATCATCAACCT 60.036 50.0 11.47 0.0 40.92 3.5 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 4.791069 GCGAGGGAGGTGGGGGTA 62.791 72.222 0.00 0.00 0.00 3.69
30 31 2.285868 CGAGGGAGGTGGGGGTAT 59.714 66.667 0.00 0.00 0.00 2.73
31 32 2.140792 CGAGGGAGGTGGGGGTATG 61.141 68.421 0.00 0.00 0.00 2.39
32 33 1.770518 GAGGGAGGTGGGGGTATGG 60.771 68.421 0.00 0.00 0.00 2.74
33 34 2.043941 GGGAGGTGGGGGTATGGT 59.956 66.667 0.00 0.00 0.00 3.55
34 35 1.621514 GGGAGGTGGGGGTATGGTT 60.622 63.158 0.00 0.00 0.00 3.67
35 36 1.613061 GGAGGTGGGGGTATGGTTG 59.387 63.158 0.00 0.00 0.00 3.77
36 37 1.613061 GAGGTGGGGGTATGGTTGG 59.387 63.158 0.00 0.00 0.00 3.77
37 38 1.933307 GAGGTGGGGGTATGGTTGGG 61.933 65.000 0.00 0.00 0.00 4.12
38 39 2.243144 GGTGGGGGTATGGTTGGGT 61.243 63.158 0.00 0.00 0.00 4.51
39 40 1.305287 GTGGGGGTATGGTTGGGTC 59.695 63.158 0.00 0.00 0.00 4.46
40 41 1.151565 TGGGGGTATGGTTGGGTCA 60.152 57.895 0.00 0.00 0.00 4.02
41 42 1.211567 TGGGGGTATGGTTGGGTCAG 61.212 60.000 0.00 0.00 0.00 3.51
42 43 1.613061 GGGGTATGGTTGGGTCAGG 59.387 63.158 0.00 0.00 0.00 3.86
43 44 1.613061 GGGTATGGTTGGGTCAGGG 59.387 63.158 0.00 0.00 0.00 4.45
44 45 1.212250 GGGTATGGTTGGGTCAGGGT 61.212 60.000 0.00 0.00 0.00 4.34
45 46 0.034477 GGTATGGTTGGGTCAGGGTG 60.034 60.000 0.00 0.00 0.00 4.61
46 47 0.034477 GTATGGTTGGGTCAGGGTGG 60.034 60.000 0.00 0.00 0.00 4.61
47 48 0.476808 TATGGTTGGGTCAGGGTGGT 60.477 55.000 0.00 0.00 0.00 4.16
48 49 1.789576 ATGGTTGGGTCAGGGTGGTC 61.790 60.000 0.00 0.00 0.00 4.02
49 50 2.457323 GGTTGGGTCAGGGTGGTCA 61.457 63.158 0.00 0.00 0.00 4.02
50 51 1.073199 GTTGGGTCAGGGTGGTCAG 59.927 63.158 0.00 0.00 0.00 3.51
51 52 1.074090 TTGGGTCAGGGTGGTCAGA 60.074 57.895 0.00 0.00 0.00 3.27
52 53 0.696143 TTGGGTCAGGGTGGTCAGAA 60.696 55.000 0.00 0.00 0.00 3.02
53 54 1.127567 TGGGTCAGGGTGGTCAGAAG 61.128 60.000 0.00 0.00 0.00 2.85
54 55 1.003233 GGTCAGGGTGGTCAGAAGC 60.003 63.158 0.00 0.00 0.00 3.86
55 56 1.374758 GTCAGGGTGGTCAGAAGCG 60.375 63.158 0.00 0.00 0.00 4.68
56 57 2.046892 CAGGGTGGTCAGAAGCGG 60.047 66.667 0.00 0.00 0.00 5.52
57 58 3.322466 AGGGTGGTCAGAAGCGGG 61.322 66.667 0.00 0.00 0.00 6.13
58 59 3.637273 GGGTGGTCAGAAGCGGGT 61.637 66.667 0.00 0.00 0.00 5.28
59 60 2.358737 GGTGGTCAGAAGCGGGTG 60.359 66.667 0.00 0.00 0.00 4.61
60 61 2.426023 GTGGTCAGAAGCGGGTGT 59.574 61.111 0.00 0.00 0.00 4.16
61 62 1.961277 GTGGTCAGAAGCGGGTGTG 60.961 63.158 0.00 0.00 0.00 3.82
62 63 2.358737 GGTCAGAAGCGGGTGTGG 60.359 66.667 0.00 0.00 0.00 4.17
63 64 2.358737 GTCAGAAGCGGGTGTGGG 60.359 66.667 0.00 0.00 0.00 4.61
64 65 2.847234 TCAGAAGCGGGTGTGGGT 60.847 61.111 0.00 0.00 0.00 4.51
65 66 2.669569 CAGAAGCGGGTGTGGGTG 60.670 66.667 0.00 0.00 0.00 4.61
66 67 3.953775 AGAAGCGGGTGTGGGTGG 61.954 66.667 0.00 0.00 0.00 4.61
67 68 4.265056 GAAGCGGGTGTGGGTGGT 62.265 66.667 0.00 0.00 0.00 4.16
68 69 4.579384 AAGCGGGTGTGGGTGGTG 62.579 66.667 0.00 0.00 0.00 4.17
74 75 4.555709 GTGTGGGTGGTGTGCGGA 62.556 66.667 0.00 0.00 0.00 5.54
75 76 4.555709 TGTGGGTGGTGTGCGGAC 62.556 66.667 0.00 0.00 0.00 4.79
168 169 2.724520 ACGGAGTACAACACGGAGT 58.275 52.632 0.00 0.00 41.79 3.85
187 188 3.634448 GAGTGCTAGCTCCTAGATGTTCA 59.366 47.826 17.23 0.00 36.26 3.18
195 196 2.619177 CTCCTAGATGTTCACCGTCGAT 59.381 50.000 0.00 0.00 34.06 3.59
213 214 4.838152 GAGCTCGATGGCCCGCAA 62.838 66.667 0.00 0.00 0.00 4.85
234 235 1.668237 CGAGCTTCTCTCAGTCGATGA 59.332 52.381 0.00 0.00 41.98 2.92
236 237 3.426829 CGAGCTTCTCTCAGTCGATGAAA 60.427 47.826 0.00 0.00 41.98 2.69
252 253 1.382146 AAACGAGGGATAGGGCGGA 60.382 57.895 0.00 0.00 0.00 5.54
339 340 0.318699 GTCTGGCTTCGGGTTTTTGC 60.319 55.000 0.00 0.00 0.00 3.68
345 346 2.137425 CTTCGGGTTTTTGCGGGGAC 62.137 60.000 0.00 0.00 0.00 4.46
346 347 2.596338 CGGGTTTTTGCGGGGACT 60.596 61.111 0.00 0.00 0.00 3.85
347 348 1.302671 CGGGTTTTTGCGGGGACTA 60.303 57.895 0.00 0.00 0.00 2.59
376 377 2.506438 GCACGAGCCGTAGTGGTC 60.506 66.667 0.00 0.00 38.32 4.02
418 419 0.318275 CTAGGCGCGTCTGGATCTTC 60.318 60.000 26.08 0.00 0.00 2.87
425 426 1.943340 GCGTCTGGATCTTCCCAAATC 59.057 52.381 0.00 0.00 35.03 2.17
428 429 2.092914 GTCTGGATCTTCCCAAATCCGT 60.093 50.000 0.00 0.00 43.73 4.69
433 434 3.181450 GGATCTTCCCAAATCCGTCTCAT 60.181 47.826 0.00 0.00 32.62 2.90
442 443 6.270000 TCCCAAATCCGTCTCATATATGAACT 59.730 38.462 16.08 1.22 36.18 3.01
443 444 7.453439 TCCCAAATCCGTCTCATATATGAACTA 59.547 37.037 16.08 2.90 36.18 2.24
450 451 8.326529 TCCGTCTCATATATGAACTAGGTATGA 58.673 37.037 16.08 4.47 36.18 2.15
465 466 2.365582 GTATGAGGTTTGCCGGACAAT 58.634 47.619 5.05 0.00 38.31 2.71
469 470 0.178975 AGGTTTGCCGGACAATCCAA 60.179 50.000 26.54 11.92 46.56 3.53
470 471 0.243636 GGTTTGCCGGACAATCCAAG 59.756 55.000 22.96 0.00 44.46 3.61
498 499 0.668535 GCTTTGTTTGAGAAGGCCGT 59.331 50.000 0.00 0.00 0.00 5.68
499 500 1.600413 GCTTTGTTTGAGAAGGCCGTG 60.600 52.381 0.00 0.00 0.00 4.94
539 541 0.257328 TTTGGACAGTGACCCAGCAA 59.743 50.000 9.22 0.29 33.43 3.91
543 545 2.111043 CAGTGACCCAGCAACCGT 59.889 61.111 0.00 0.00 0.00 4.83
545 547 1.525995 AGTGACCCAGCAACCGTTG 60.526 57.895 6.91 6.91 0.00 4.10
564 566 3.769739 TGGAGCGTTTGGATAGCATAT 57.230 42.857 0.00 0.00 0.00 1.78
585 590 0.249741 GTGCGTCCAGTTGTAGGTGT 60.250 55.000 0.00 0.00 0.00 4.16
597 602 7.390440 TCCAGTTGTAGGTGTTCTAATGATTTG 59.610 37.037 0.00 0.00 0.00 2.32
600 605 8.784043 AGTTGTAGGTGTTCTAATGATTTGTTC 58.216 33.333 0.00 0.00 0.00 3.18
652 664 0.177141 GCTGGTGGCGTGTAGGATTA 59.823 55.000 0.00 0.00 0.00 1.75
660 683 2.470821 GCGTGTAGGATTACTGCGAAT 58.529 47.619 0.00 0.00 34.10 3.34
704 738 1.808234 CGCTTCCGCTCCGTAAATCG 61.808 60.000 0.00 0.00 39.52 3.34
828 867 3.627218 GCCGAACGCATCCTACGC 61.627 66.667 0.00 0.00 37.47 4.42
959 1017 1.303643 CCCACCTTCTTCCAGCACC 60.304 63.158 0.00 0.00 0.00 5.01
964 1029 0.890996 CCTTCTTCCAGCACCCACAC 60.891 60.000 0.00 0.00 0.00 3.82
996 1067 3.771160 CCCCACTCTCCCGAACCG 61.771 72.222 0.00 0.00 0.00 4.44
1550 1649 3.316308 AGCTGGTTCTGTTGCTTTAGTTG 59.684 43.478 0.00 0.00 30.96 3.16
1557 1685 3.066621 TCTGTTGCTTTAGTTGGTGCTTG 59.933 43.478 0.00 0.00 0.00 4.01
1558 1686 2.127251 GTTGCTTTAGTTGGTGCTTGC 58.873 47.619 0.00 0.00 0.00 4.01
1559 1687 0.673437 TGCTTTAGTTGGTGCTTGCC 59.327 50.000 0.00 0.00 0.00 4.52
1560 1688 0.387239 GCTTTAGTTGGTGCTTGCCG 60.387 55.000 0.00 0.00 0.00 5.69
1561 1689 1.234821 CTTTAGTTGGTGCTTGCCGA 58.765 50.000 0.00 0.00 0.00 5.54
1562 1690 0.948678 TTTAGTTGGTGCTTGCCGAC 59.051 50.000 5.21 5.21 42.04 4.79
1563 1691 2.510906 AGTTGGTGCTTGCCGACT 59.489 55.556 8.87 8.87 45.86 4.18
1564 1692 2.946762 GTTGGTGCTTGCCGACTC 59.053 61.111 5.90 0.00 39.33 3.36
1565 1693 1.598130 GTTGGTGCTTGCCGACTCT 60.598 57.895 5.90 0.00 39.33 3.24
1566 1694 1.597854 TTGGTGCTTGCCGACTCTG 60.598 57.895 0.00 0.00 0.00 3.35
1567 1695 2.743928 GGTGCTTGCCGACTCTGG 60.744 66.667 0.00 0.00 0.00 3.86
1568 1696 2.031163 GTGCTTGCCGACTCTGGT 59.969 61.111 0.00 0.00 0.00 4.00
1569 1697 1.598130 GTGCTTGCCGACTCTGGTT 60.598 57.895 0.00 0.00 0.00 3.67
1570 1698 0.320421 GTGCTTGCCGACTCTGGTTA 60.320 55.000 0.00 0.00 0.00 2.85
1571 1699 0.613260 TGCTTGCCGACTCTGGTTAT 59.387 50.000 0.00 0.00 0.00 1.89
1572 1700 1.291132 GCTTGCCGACTCTGGTTATC 58.709 55.000 0.00 0.00 0.00 1.75
1573 1701 1.134670 GCTTGCCGACTCTGGTTATCT 60.135 52.381 0.00 0.00 0.00 1.98
1574 1702 2.544685 CTTGCCGACTCTGGTTATCTG 58.455 52.381 0.00 0.00 0.00 2.90
1575 1703 0.824109 TGCCGACTCTGGTTATCTGG 59.176 55.000 0.00 0.00 0.00 3.86
1576 1704 1.112113 GCCGACTCTGGTTATCTGGA 58.888 55.000 0.00 0.00 0.00 3.86
1577 1705 1.480954 GCCGACTCTGGTTATCTGGAA 59.519 52.381 0.00 0.00 0.00 3.53
1578 1706 2.738964 GCCGACTCTGGTTATCTGGAAC 60.739 54.545 0.00 0.00 0.00 3.62
1579 1707 2.761208 CCGACTCTGGTTATCTGGAACT 59.239 50.000 0.00 0.00 0.00 3.01
1580 1708 3.181485 CCGACTCTGGTTATCTGGAACTC 60.181 52.174 0.00 0.00 0.00 3.01
1581 1709 3.697045 CGACTCTGGTTATCTGGAACTCT 59.303 47.826 0.00 0.00 0.00 3.24
1582 1710 4.201970 CGACTCTGGTTATCTGGAACTCTC 60.202 50.000 0.00 0.00 0.00 3.20
1583 1711 4.678256 ACTCTGGTTATCTGGAACTCTCA 58.322 43.478 0.00 0.00 0.00 3.27
1584 1712 5.087323 ACTCTGGTTATCTGGAACTCTCAA 58.913 41.667 0.00 0.00 0.00 3.02
1585 1713 5.186797 ACTCTGGTTATCTGGAACTCTCAAG 59.813 44.000 0.00 0.00 0.00 3.02
1586 1714 5.087323 TCTGGTTATCTGGAACTCTCAAGT 58.913 41.667 0.00 0.00 37.32 3.16
1587 1715 5.047021 TCTGGTTATCTGGAACTCTCAAGTG 60.047 44.000 0.00 0.00 35.36 3.16
1588 1716 3.935828 GGTTATCTGGAACTCTCAAGTGC 59.064 47.826 0.00 0.00 35.36 4.40
1589 1717 4.323104 GGTTATCTGGAACTCTCAAGTGCT 60.323 45.833 0.00 0.00 35.36 4.40
1590 1718 3.608316 ATCTGGAACTCTCAAGTGCTC 57.392 47.619 0.00 0.00 35.36 4.26
1670 1827 8.477984 TTTTGGCAAACTGATATATCAAAAGC 57.522 30.769 13.10 15.66 36.18 3.51
1674 1831 7.555914 TGGCAAACTGATATATCAAAAGCAGTA 59.444 33.333 16.08 6.43 35.73 2.74
1675 1832 8.072567 GGCAAACTGATATATCAAAAGCAGTAG 58.927 37.037 16.08 4.42 35.73 2.57
1690 1847 2.746362 GCAGTAGTTCATTTCAGCAGCT 59.254 45.455 0.00 0.00 0.00 4.24
1692 1849 4.671250 GCAGTAGTTCATTTCAGCAGCTTC 60.671 45.833 0.00 0.00 0.00 3.86
1695 1852 3.748083 AGTTCATTTCAGCAGCTTCTGA 58.252 40.909 12.33 12.33 40.99 3.27
1700 1857 4.637534 TCATTTCAGCAGCTTCTGATTACC 59.362 41.667 16.97 0.00 42.12 2.85
1713 1870 3.118629 TCTGATTACCATCTCTGCCACAC 60.119 47.826 0.00 0.00 0.00 3.82
1735 1892 7.616103 CACGATTGTGCTTTTTGTAATGTAA 57.384 32.000 0.00 0.00 39.67 2.41
1736 1893 7.710273 CACGATTGTGCTTTTTGTAATGTAAG 58.290 34.615 0.00 0.00 39.67 2.34
1737 1894 7.378461 CACGATTGTGCTTTTTGTAATGTAAGT 59.622 33.333 0.00 0.00 39.67 2.24
1738 1895 7.918562 ACGATTGTGCTTTTTGTAATGTAAGTT 59.081 29.630 0.00 0.00 0.00 2.66
1739 1896 8.751335 CGATTGTGCTTTTTGTAATGTAAGTTT 58.249 29.630 0.00 0.00 0.00 2.66
1754 1911 8.986477 AATGTAAGTTTTTAGGTTGATGATGC 57.014 30.769 0.00 0.00 0.00 3.91
1755 1912 6.607689 TGTAAGTTTTTAGGTTGATGATGCG 58.392 36.000 0.00 0.00 0.00 4.73
1756 1913 4.096732 AGTTTTTAGGTTGATGATGCGC 57.903 40.909 0.00 0.00 0.00 6.09
1757 1914 3.758554 AGTTTTTAGGTTGATGATGCGCT 59.241 39.130 9.73 0.00 0.00 5.92
1758 1915 4.098416 GTTTTTAGGTTGATGATGCGCTC 58.902 43.478 9.73 4.27 0.00 5.03
1759 1916 2.689553 TTAGGTTGATGATGCGCTCA 57.310 45.000 9.73 10.58 38.53 4.26
1760 1917 1.939974 TAGGTTGATGATGCGCTCAC 58.060 50.000 9.73 0.00 36.48 3.51
1761 1918 0.036105 AGGTTGATGATGCGCTCACA 60.036 50.000 9.73 6.58 36.48 3.58
1762 1919 0.376152 GGTTGATGATGCGCTCACAG 59.624 55.000 9.73 0.00 36.48 3.66
1763 1920 1.081892 GTTGATGATGCGCTCACAGT 58.918 50.000 9.73 0.00 36.48 3.55
1764 1921 2.270923 GTTGATGATGCGCTCACAGTA 58.729 47.619 9.73 0.00 36.48 2.74
1765 1922 2.671130 TGATGATGCGCTCACAGTAA 57.329 45.000 9.73 0.00 36.48 2.24
1766 1923 2.543641 TGATGATGCGCTCACAGTAAG 58.456 47.619 9.73 0.00 36.48 2.34
1767 1924 2.094026 TGATGATGCGCTCACAGTAAGT 60.094 45.455 9.73 0.00 36.48 2.24
1768 1925 2.455674 TGATGCGCTCACAGTAAGTT 57.544 45.000 9.73 0.00 0.00 2.66
1769 1926 3.586100 TGATGCGCTCACAGTAAGTTA 57.414 42.857 9.73 0.00 0.00 2.24
1770 1927 3.250744 TGATGCGCTCACAGTAAGTTAC 58.749 45.455 9.73 4.78 0.00 2.50
1771 1928 2.804697 TGCGCTCACAGTAAGTTACA 57.195 45.000 15.28 0.00 0.00 2.41
1772 1929 3.313012 TGCGCTCACAGTAAGTTACAT 57.687 42.857 15.28 0.10 0.00 2.29
1773 1930 3.659786 TGCGCTCACAGTAAGTTACATT 58.340 40.909 15.28 0.00 0.00 2.71
1774 1931 4.062293 TGCGCTCACAGTAAGTTACATTT 58.938 39.130 15.28 0.00 0.00 2.32
1775 1932 5.231702 TGCGCTCACAGTAAGTTACATTTA 58.768 37.500 15.28 0.00 0.00 1.40
1776 1933 5.872617 TGCGCTCACAGTAAGTTACATTTAT 59.127 36.000 15.28 0.00 0.00 1.40
1777 1934 6.183360 TGCGCTCACAGTAAGTTACATTTATG 60.183 38.462 15.28 6.72 0.00 1.90
1778 1935 6.185399 CGCTCACAGTAAGTTACATTTATGC 58.815 40.000 15.28 10.25 0.00 3.14
1779 1936 6.185399 GCTCACAGTAAGTTACATTTATGCG 58.815 40.000 15.28 0.00 0.00 4.73
1780 1937 6.183360 GCTCACAGTAAGTTACATTTATGCGT 60.183 38.462 15.28 0.00 0.00 5.24
1781 1938 7.623506 GCTCACAGTAAGTTACATTTATGCGTT 60.624 37.037 15.28 0.00 0.00 4.84
1782 1939 8.760103 TCACAGTAAGTTACATTTATGCGTTA 57.240 30.769 15.28 0.00 0.00 3.18
1783 1940 8.865978 TCACAGTAAGTTACATTTATGCGTTAG 58.134 33.333 15.28 0.00 0.00 2.34
1784 1941 8.114290 CACAGTAAGTTACATTTATGCGTTAGG 58.886 37.037 15.28 0.00 0.00 2.69
1785 1942 7.123830 CAGTAAGTTACATTTATGCGTTAGGC 58.876 38.462 15.28 0.00 43.96 3.93
1794 1951 4.371975 GCGTTAGGCACAGAACCA 57.628 55.556 0.00 0.00 42.87 3.67
1795 1952 2.624169 GCGTTAGGCACAGAACCAA 58.376 52.632 0.00 0.00 42.87 3.67
1796 1953 0.237498 GCGTTAGGCACAGAACCAAC 59.763 55.000 0.00 0.00 42.87 3.77
1797 1954 1.878953 CGTTAGGCACAGAACCAACT 58.121 50.000 0.00 0.00 0.00 3.16
1798 1955 1.531149 CGTTAGGCACAGAACCAACTG 59.469 52.381 0.00 0.00 42.78 3.16
1816 1973 4.545823 ACTGTATTGTTGAACGTGTTGG 57.454 40.909 0.00 0.00 0.00 3.77
1817 1974 3.314080 ACTGTATTGTTGAACGTGTTGGG 59.686 43.478 0.00 0.00 0.00 4.12
1818 1975 3.280295 TGTATTGTTGAACGTGTTGGGT 58.720 40.909 0.00 0.00 0.00 4.51
1819 1976 3.695060 TGTATTGTTGAACGTGTTGGGTT 59.305 39.130 0.00 0.00 0.00 4.11
1820 1977 3.878160 ATTGTTGAACGTGTTGGGTTT 57.122 38.095 0.00 0.00 0.00 3.27
1821 1978 4.985538 ATTGTTGAACGTGTTGGGTTTA 57.014 36.364 0.00 0.00 0.00 2.01
1822 1979 4.778534 TTGTTGAACGTGTTGGGTTTAA 57.221 36.364 0.00 0.00 0.00 1.52
1823 1980 4.094090 TGTTGAACGTGTTGGGTTTAAC 57.906 40.909 0.00 5.65 41.51 2.01
1824 1981 3.757493 TGTTGAACGTGTTGGGTTTAACT 59.243 39.130 11.72 0.00 41.62 2.24
1825 1982 4.099824 GTTGAACGTGTTGGGTTTAACTG 58.900 43.478 0.00 0.00 39.42 3.16
1826 1983 3.607741 TGAACGTGTTGGGTTTAACTGA 58.392 40.909 0.00 0.00 0.00 3.41
1827 1984 3.623960 TGAACGTGTTGGGTTTAACTGAG 59.376 43.478 0.00 0.00 0.00 3.35
1828 1985 1.944709 ACGTGTTGGGTTTAACTGAGC 59.055 47.619 0.00 0.00 0.00 4.26
1829 1986 1.944024 CGTGTTGGGTTTAACTGAGCA 59.056 47.619 0.00 0.00 0.00 4.26
1830 1987 2.286772 CGTGTTGGGTTTAACTGAGCAC 60.287 50.000 0.00 0.27 0.00 4.40
1831 1988 1.944024 TGTTGGGTTTAACTGAGCACG 59.056 47.619 0.00 0.00 0.00 5.34
1832 1989 0.948678 TTGGGTTTAACTGAGCACGC 59.051 50.000 0.00 0.00 0.00 5.34
1833 1990 0.179043 TGGGTTTAACTGAGCACGCA 60.179 50.000 0.00 0.00 0.00 5.24
1834 1991 0.517316 GGGTTTAACTGAGCACGCAG 59.483 55.000 0.00 0.00 41.63 5.18
1835 1992 1.508632 GGTTTAACTGAGCACGCAGA 58.491 50.000 8.44 0.00 39.20 4.26
1836 1993 1.461127 GGTTTAACTGAGCACGCAGAG 59.539 52.381 8.44 0.00 39.20 3.35
1837 1994 1.136224 GTTTAACTGAGCACGCAGAGC 60.136 52.381 8.44 0.00 46.67 4.09
1844 2001 3.163655 GCACGCAGAGCTTGACTC 58.836 61.111 0.00 0.00 46.66 3.36
1855 2012 3.194062 GAGCTTGACTCTGGTTATCTGC 58.806 50.000 0.00 0.00 42.62 4.26
1856 2013 2.568956 AGCTTGACTCTGGTTATCTGCA 59.431 45.455 0.00 0.00 0.00 4.41
1857 2014 3.008375 AGCTTGACTCTGGTTATCTGCAA 59.992 43.478 0.00 0.00 0.00 4.08
1858 2015 3.373439 GCTTGACTCTGGTTATCTGCAAG 59.627 47.826 0.00 0.00 35.75 4.01
1859 2016 4.573900 CTTGACTCTGGTTATCTGCAAGT 58.426 43.478 0.00 0.00 33.76 3.16
1860 2017 5.724328 CTTGACTCTGGTTATCTGCAAGTA 58.276 41.667 0.00 0.00 33.76 2.24
1861 2018 5.330455 TGACTCTGGTTATCTGCAAGTAG 57.670 43.478 0.00 0.00 33.76 2.57
1862 2019 4.772624 TGACTCTGGTTATCTGCAAGTAGT 59.227 41.667 0.00 0.00 33.76 2.73
1863 2020 5.246203 TGACTCTGGTTATCTGCAAGTAGTT 59.754 40.000 0.00 0.00 33.76 2.24
1864 2021 5.482908 ACTCTGGTTATCTGCAAGTAGTTG 58.517 41.667 5.89 5.89 36.67 3.16
1865 2022 5.012148 ACTCTGGTTATCTGCAAGTAGTTGT 59.988 40.000 11.85 0.00 35.92 3.32
1866 2023 6.210784 ACTCTGGTTATCTGCAAGTAGTTGTA 59.789 38.462 11.85 6.54 35.92 2.41
1867 2024 6.395629 TCTGGTTATCTGCAAGTAGTTGTAC 58.604 40.000 11.85 0.00 35.92 2.90
1868 2025 6.210784 TCTGGTTATCTGCAAGTAGTTGTACT 59.789 38.462 11.85 0.00 41.61 2.73
1869 2026 7.395206 TCTGGTTATCTGCAAGTAGTTGTACTA 59.605 37.037 11.85 0.00 38.66 1.82
1895 2052 9.284968 ACTATTGTTACTTTGTTAGTGATTGCT 57.715 29.630 0.00 0.00 37.73 3.91
1898 2055 7.801716 TGTTACTTTGTTAGTGATTGCTTCT 57.198 32.000 0.00 0.00 37.73 2.85
1899 2056 7.639039 TGTTACTTTGTTAGTGATTGCTTCTG 58.361 34.615 0.00 0.00 37.73 3.02
1900 2057 7.282224 TGTTACTTTGTTAGTGATTGCTTCTGT 59.718 33.333 0.00 0.00 37.73 3.41
1901 2058 6.064846 ACTTTGTTAGTGATTGCTTCTGTG 57.935 37.500 0.00 0.00 35.19 3.66
1902 2059 5.822519 ACTTTGTTAGTGATTGCTTCTGTGA 59.177 36.000 0.00 0.00 35.19 3.58
1903 2060 6.488006 ACTTTGTTAGTGATTGCTTCTGTGAT 59.512 34.615 0.00 0.00 35.19 3.06
1904 2061 6.882610 TTGTTAGTGATTGCTTCTGTGATT 57.117 33.333 0.00 0.00 0.00 2.57
1905 2062 6.882610 TGTTAGTGATTGCTTCTGTGATTT 57.117 33.333 0.00 0.00 0.00 2.17
1906 2063 6.671190 TGTTAGTGATTGCTTCTGTGATTTG 58.329 36.000 0.00 0.00 0.00 2.32
1907 2064 6.486320 TGTTAGTGATTGCTTCTGTGATTTGA 59.514 34.615 0.00 0.00 0.00 2.69
1908 2065 7.175467 TGTTAGTGATTGCTTCTGTGATTTGAT 59.825 33.333 0.00 0.00 0.00 2.57
1909 2066 6.585695 AGTGATTGCTTCTGTGATTTGATT 57.414 33.333 0.00 0.00 0.00 2.57
1910 2067 6.989659 AGTGATTGCTTCTGTGATTTGATTT 58.010 32.000 0.00 0.00 0.00 2.17
1911 2068 6.866770 AGTGATTGCTTCTGTGATTTGATTTG 59.133 34.615 0.00 0.00 0.00 2.32
1912 2069 6.643770 GTGATTGCTTCTGTGATTTGATTTGT 59.356 34.615 0.00 0.00 0.00 2.83
1913 2070 7.809331 GTGATTGCTTCTGTGATTTGATTTGTA 59.191 33.333 0.00 0.00 0.00 2.41
1914 2071 7.809331 TGATTGCTTCTGTGATTTGATTTGTAC 59.191 33.333 0.00 0.00 0.00 2.90
1915 2072 6.882610 TGCTTCTGTGATTTGATTTGTACT 57.117 33.333 0.00 0.00 0.00 2.73
1916 2073 7.977789 TGCTTCTGTGATTTGATTTGTACTA 57.022 32.000 0.00 0.00 0.00 1.82
1917 2074 8.032952 TGCTTCTGTGATTTGATTTGTACTAG 57.967 34.615 0.00 0.00 0.00 2.57
1918 2075 7.877612 TGCTTCTGTGATTTGATTTGTACTAGA 59.122 33.333 0.00 0.00 0.00 2.43
1919 2076 8.721478 GCTTCTGTGATTTGATTTGTACTAGAA 58.279 33.333 0.00 0.00 0.00 2.10
1921 2078 9.778741 TTCTGTGATTTGATTTGTACTAGAAGT 57.221 29.630 0.00 0.00 0.00 3.01
1922 2079 9.778741 TCTGTGATTTGATTTGTACTAGAAGTT 57.221 29.630 0.00 0.00 0.00 2.66
1935 2092 8.223177 TGTACTAGAAGTTACTAATCTCTGCC 57.777 38.462 0.00 0.00 0.00 4.85
1936 2093 7.832685 TGTACTAGAAGTTACTAATCTCTGCCA 59.167 37.037 0.00 0.00 0.00 4.92
1937 2094 7.102847 ACTAGAAGTTACTAATCTCTGCCAC 57.897 40.000 0.00 0.00 0.00 5.01
1938 2095 5.000012 AGAAGTTACTAATCTCTGCCACG 58.000 43.478 0.00 0.00 0.00 4.94
1939 2096 4.463186 AGAAGTTACTAATCTCTGCCACGT 59.537 41.667 0.00 0.00 0.00 4.49
1940 2097 4.111375 AGTTACTAATCTCTGCCACGTG 57.889 45.455 9.08 9.08 0.00 4.49
1941 2098 3.762288 AGTTACTAATCTCTGCCACGTGA 59.238 43.478 19.30 0.00 0.00 4.35
1942 2099 4.402793 AGTTACTAATCTCTGCCACGTGAT 59.597 41.667 19.30 0.00 0.00 3.06
1943 2100 3.895232 ACTAATCTCTGCCACGTGATT 57.105 42.857 19.30 10.06 33.31 2.57
1944 2101 3.525537 ACTAATCTCTGCCACGTGATTG 58.474 45.455 19.30 6.21 31.72 2.67
1945 2102 1.089920 AATCTCTGCCACGTGATTGC 58.910 50.000 19.30 12.92 0.00 3.56
1946 2103 1.086067 ATCTCTGCCACGTGATTGCG 61.086 55.000 19.30 8.69 37.94 4.85
1947 2104 3.372676 CTCTGCCACGTGATTGCGC 62.373 63.158 19.30 12.11 34.88 6.09
1948 2105 3.425713 CTGCCACGTGATTGCGCT 61.426 61.111 19.30 0.00 34.88 5.92
1949 2106 2.969806 CTGCCACGTGATTGCGCTT 61.970 57.895 19.30 0.00 34.88 4.68
1950 2107 1.634757 CTGCCACGTGATTGCGCTTA 61.635 55.000 19.30 0.00 34.88 3.09
1951 2108 1.024046 TGCCACGTGATTGCGCTTAT 61.024 50.000 19.30 1.37 34.88 1.73
1952 2109 0.589729 GCCACGTGATTGCGCTTATG 60.590 55.000 19.30 0.04 34.88 1.90
1953 2110 0.726827 CCACGTGATTGCGCTTATGT 59.273 50.000 19.30 0.72 34.88 2.29
1954 2111 1.930503 CCACGTGATTGCGCTTATGTA 59.069 47.619 19.30 0.00 34.88 2.29
1955 2112 2.033747 CCACGTGATTGCGCTTATGTAG 60.034 50.000 19.30 0.00 34.88 2.74
1956 2113 1.593006 ACGTGATTGCGCTTATGTAGC 59.407 47.619 9.73 0.00 46.83 3.58
1978 2135 7.961326 AGCAATATAAGTTTCCACAATCCTT 57.039 32.000 0.00 0.00 0.00 3.36
1981 2138 9.683069 GCAATATAAGTTTCCACAATCCTTATG 57.317 33.333 0.00 0.00 32.30 1.90
1990 2147 6.357579 TCCACAATCCTTATGTTTTGCATT 57.642 33.333 0.00 0.00 38.94 3.56
1999 2156 5.393027 CCTTATGTTTTGCATTAGGCGAGTT 60.393 40.000 0.00 0.00 44.34 3.01
2000 2157 6.183360 CCTTATGTTTTGCATTAGGCGAGTTA 60.183 38.462 0.00 0.00 44.34 2.24
2013 2170 1.217882 CGAGTTATGTCCAATCGCCC 58.782 55.000 0.00 0.00 0.00 6.13
2062 2219 6.039270 TCGTTAAATAAGAGCATTCCAATGGG 59.961 38.462 0.00 0.00 36.90 4.00
2063 2220 6.515832 GTTAAATAAGAGCATTCCAATGGGG 58.484 40.000 0.00 0.00 36.90 4.96
2131 2292 5.003160 TCCACAAGTATCAGTCAATTGGTG 58.997 41.667 5.42 4.05 0.00 4.17
2162 2323 3.737850 CAGCTTGGTCCTGATCCTATTC 58.262 50.000 0.00 0.00 32.03 1.75
2182 2343 8.960591 CCTATTCATGGTGTTACTCTGAAAATT 58.039 33.333 0.00 0.00 30.39 1.82
2183 2344 9.778993 CTATTCATGGTGTTACTCTGAAAATTG 57.221 33.333 0.00 0.00 30.39 2.32
2185 2346 7.581213 TCATGGTGTTACTCTGAAAATTGTT 57.419 32.000 0.00 0.00 0.00 2.83
2187 2348 8.564574 TCATGGTGTTACTCTGAAAATTGTTAC 58.435 33.333 0.00 0.00 0.00 2.50
2208 2369 5.056894 ACGCGTGAGAAAATTAGACTAGT 57.943 39.130 12.93 0.00 0.00 2.57
2215 2376 7.545965 CGTGAGAAAATTAGACTAGTTGTCCAT 59.454 37.037 0.00 0.00 46.46 3.41
2261 2426 5.674052 AACAAGATGATGTGCTAGAGACT 57.326 39.130 0.00 0.00 32.81 3.24
2428 2596 6.209986 TGGTGGTCTGATATTTATACCCGTAG 59.790 42.308 0.00 0.00 0.00 3.51
2475 2643 4.214310 TGAAACCATCAAGAAGAAAGCCA 58.786 39.130 0.00 0.00 34.30 4.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 4.791069 TACCCCCACCTCCCTCGC 62.791 72.222 0.00 0.00 0.00 5.03
13 14 2.140792 CATACCCCCACCTCCCTCG 61.141 68.421 0.00 0.00 0.00 4.63
15 16 2.146224 AACCATACCCCCACCTCCCT 62.146 60.000 0.00 0.00 0.00 4.20
16 17 1.621514 AACCATACCCCCACCTCCC 60.622 63.158 0.00 0.00 0.00 4.30
17 18 1.613061 CAACCATACCCCCACCTCC 59.387 63.158 0.00 0.00 0.00 4.30
18 19 1.613061 CCAACCATACCCCCACCTC 59.387 63.158 0.00 0.00 0.00 3.85
19 20 1.933812 CCCAACCATACCCCCACCT 60.934 63.158 0.00 0.00 0.00 4.00
20 21 2.219449 GACCCAACCATACCCCCACC 62.219 65.000 0.00 0.00 0.00 4.61
21 22 1.305287 GACCCAACCATACCCCCAC 59.695 63.158 0.00 0.00 0.00 4.61
22 23 1.151565 TGACCCAACCATACCCCCA 60.152 57.895 0.00 0.00 0.00 4.96
23 24 1.613061 CTGACCCAACCATACCCCC 59.387 63.158 0.00 0.00 0.00 5.40
24 25 1.613061 CCTGACCCAACCATACCCC 59.387 63.158 0.00 0.00 0.00 4.95
25 26 1.212250 ACCCTGACCCAACCATACCC 61.212 60.000 0.00 0.00 0.00 3.69
26 27 0.034477 CACCCTGACCCAACCATACC 60.034 60.000 0.00 0.00 0.00 2.73
27 28 0.034477 CCACCCTGACCCAACCATAC 60.034 60.000 0.00 0.00 0.00 2.39
28 29 0.476808 ACCACCCTGACCCAACCATA 60.477 55.000 0.00 0.00 0.00 2.74
29 30 1.778383 ACCACCCTGACCCAACCAT 60.778 57.895 0.00 0.00 0.00 3.55
30 31 2.369015 ACCACCCTGACCCAACCA 60.369 61.111 0.00 0.00 0.00 3.67
31 32 2.411765 CTGACCACCCTGACCCAACC 62.412 65.000 0.00 0.00 0.00 3.77
32 33 1.073199 CTGACCACCCTGACCCAAC 59.927 63.158 0.00 0.00 0.00 3.77
33 34 0.696143 TTCTGACCACCCTGACCCAA 60.696 55.000 0.00 0.00 0.00 4.12
34 35 1.074090 TTCTGACCACCCTGACCCA 60.074 57.895 0.00 0.00 0.00 4.51
35 36 1.679898 CTTCTGACCACCCTGACCC 59.320 63.158 0.00 0.00 0.00 4.46
36 37 1.003233 GCTTCTGACCACCCTGACC 60.003 63.158 0.00 0.00 0.00 4.02
37 38 1.374758 CGCTTCTGACCACCCTGAC 60.375 63.158 0.00 0.00 0.00 3.51
38 39 2.583441 CCGCTTCTGACCACCCTGA 61.583 63.158 0.00 0.00 0.00 3.86
39 40 2.046892 CCGCTTCTGACCACCCTG 60.047 66.667 0.00 0.00 0.00 4.45
40 41 3.322466 CCCGCTTCTGACCACCCT 61.322 66.667 0.00 0.00 0.00 4.34
41 42 3.637273 ACCCGCTTCTGACCACCC 61.637 66.667 0.00 0.00 0.00 4.61
42 43 2.358737 CACCCGCTTCTGACCACC 60.359 66.667 0.00 0.00 0.00 4.61
43 44 1.961277 CACACCCGCTTCTGACCAC 60.961 63.158 0.00 0.00 0.00 4.16
44 45 2.425592 CACACCCGCTTCTGACCA 59.574 61.111 0.00 0.00 0.00 4.02
45 46 2.358737 CCACACCCGCTTCTGACC 60.359 66.667 0.00 0.00 0.00 4.02
46 47 2.358737 CCCACACCCGCTTCTGAC 60.359 66.667 0.00 0.00 0.00 3.51
47 48 2.847234 ACCCACACCCGCTTCTGA 60.847 61.111 0.00 0.00 0.00 3.27
48 49 2.669569 CACCCACACCCGCTTCTG 60.670 66.667 0.00 0.00 0.00 3.02
49 50 3.953775 CCACCCACACCCGCTTCT 61.954 66.667 0.00 0.00 0.00 2.85
50 51 4.265056 ACCACCCACACCCGCTTC 62.265 66.667 0.00 0.00 0.00 3.86
51 52 4.579384 CACCACCCACACCCGCTT 62.579 66.667 0.00 0.00 0.00 4.68
57 58 4.555709 TCCGCACACCACCCACAC 62.556 66.667 0.00 0.00 0.00 3.82
58 59 4.555709 GTCCGCACACCACCCACA 62.556 66.667 0.00 0.00 0.00 4.17
133 134 1.712018 CGTCGCTCACGGATAGTCCA 61.712 60.000 0.00 0.00 45.46 4.02
165 166 3.634448 TGAACATCTAGGAGCTAGCACTC 59.366 47.826 18.83 6.45 34.36 3.51
168 169 2.695666 GGTGAACATCTAGGAGCTAGCA 59.304 50.000 18.83 0.00 34.36 3.49
179 180 1.469940 GCTCATCGACGGTGAACATCT 60.470 52.381 12.62 0.00 0.00 2.90
181 182 0.532573 AGCTCATCGACGGTGAACAT 59.467 50.000 12.62 0.00 0.00 2.71
183 184 2.654939 GAGCTCATCGACGGTGAAC 58.345 57.895 12.62 7.90 0.00 3.18
234 235 1.382146 TCCGCCCTATCCCTCGTTT 60.382 57.895 0.00 0.00 0.00 3.60
236 237 2.203509 CTCCGCCCTATCCCTCGT 60.204 66.667 0.00 0.00 0.00 4.18
252 253 3.796111 TCATCTCCTCACCTTCCTTTCT 58.204 45.455 0.00 0.00 0.00 2.52
339 340 1.757340 GTCCTCACCCTAGTCCCCG 60.757 68.421 0.00 0.00 0.00 5.73
345 346 2.893398 GTGCCGTCCTCACCCTAG 59.107 66.667 0.00 0.00 0.00 3.02
346 347 3.066190 CGTGCCGTCCTCACCCTA 61.066 66.667 0.00 0.00 0.00 3.53
347 348 4.988716 TCGTGCCGTCCTCACCCT 62.989 66.667 0.00 0.00 0.00 4.34
368 369 1.068472 CACGTCAGACCAGACCACTAC 60.068 57.143 0.00 0.00 35.07 2.73
375 376 1.838568 CGTCGTCACGTCAGACCAGA 61.839 60.000 0.00 0.00 41.42 3.86
376 377 1.440518 CGTCGTCACGTCAGACCAG 60.441 63.158 0.00 0.00 41.42 4.00
401 402 2.496817 GAAGATCCAGACGCGCCT 59.503 61.111 5.73 0.00 0.00 5.52
418 419 6.467677 AGTTCATATATGAGACGGATTTGGG 58.532 40.000 14.86 0.00 38.19 4.12
425 426 8.507524 TCATACCTAGTTCATATATGAGACGG 57.492 38.462 14.86 15.11 38.19 4.79
433 434 7.524863 CGGCAAACCTCATACCTAGTTCATATA 60.525 40.741 0.00 0.00 0.00 0.86
442 443 1.483415 GTCCGGCAAACCTCATACCTA 59.517 52.381 0.00 0.00 0.00 3.08
443 444 0.252197 GTCCGGCAAACCTCATACCT 59.748 55.000 0.00 0.00 0.00 3.08
450 451 0.178975 TTGGATTGTCCGGCAAACCT 60.179 50.000 26.22 9.90 46.47 3.50
465 466 3.644966 ACAAAGCCCGAATATCTTGGA 57.355 42.857 0.00 0.00 0.00 3.53
469 470 4.843728 TCTCAAACAAAGCCCGAATATCT 58.156 39.130 0.00 0.00 0.00 1.98
470 471 5.449177 CCTTCTCAAACAAAGCCCGAATATC 60.449 44.000 0.00 0.00 0.00 1.63
514 516 2.757868 TGGGTCACTGTCCAAACAAAAG 59.242 45.455 0.00 0.00 34.24 2.27
515 517 2.757868 CTGGGTCACTGTCCAAACAAAA 59.242 45.455 0.00 0.00 34.24 2.44
516 518 2.374184 CTGGGTCACTGTCCAAACAAA 58.626 47.619 0.00 0.00 34.24 2.83
517 519 2.021723 GCTGGGTCACTGTCCAAACAA 61.022 52.381 0.00 0.00 34.24 2.83
518 520 0.465460 GCTGGGTCACTGTCCAAACA 60.465 55.000 0.00 0.00 31.97 2.83
519 521 0.465460 TGCTGGGTCACTGTCCAAAC 60.465 55.000 0.00 0.00 31.97 2.93
520 522 0.257328 TTGCTGGGTCACTGTCCAAA 59.743 50.000 0.00 0.00 31.97 3.28
522 524 1.148273 GTTGCTGGGTCACTGTCCA 59.852 57.895 0.00 0.00 0.00 4.02
539 541 0.322322 TATCCAAACGCTCCAACGGT 59.678 50.000 0.00 0.00 37.37 4.83
543 545 2.418368 ATGCTATCCAAACGCTCCAA 57.582 45.000 0.00 0.00 0.00 3.53
545 547 2.744202 CCATATGCTATCCAAACGCTCC 59.256 50.000 0.00 0.00 0.00 4.70
574 579 8.691661 AACAAATCATTAGAACACCTACAACT 57.308 30.769 0.00 0.00 0.00 3.16
585 590 6.009589 TGGCCTTCAGAACAAATCATTAGAA 58.990 36.000 3.32 0.00 0.00 2.10
652 664 3.573967 AGAATGGTTTTGGAATTCGCAGT 59.426 39.130 0.00 0.00 35.83 4.40
660 683 0.878416 CCGCGAGAATGGTTTTGGAA 59.122 50.000 8.23 0.00 0.00 3.53
689 723 1.434696 GGTCGATTTACGGAGCGGA 59.565 57.895 0.00 0.00 42.82 5.54
799 838 1.442017 GTTCGGCGATGTTTGGTGC 60.442 57.895 11.76 0.00 0.00 5.01
828 867 2.786495 CGGATCGGTGAGGTGGAGG 61.786 68.421 0.00 0.00 0.00 4.30
910 951 2.161855 CGAGATGAGAGGAGAGGATGG 58.838 57.143 0.00 0.00 0.00 3.51
911 952 1.541147 GCGAGATGAGAGGAGAGGATG 59.459 57.143 0.00 0.00 0.00 3.51
912 953 1.547675 GGCGAGATGAGAGGAGAGGAT 60.548 57.143 0.00 0.00 0.00 3.24
1269 1353 0.703488 TGATGGACATGGCCTTGGAA 59.297 50.000 21.02 0.00 0.00 3.53
1550 1649 2.743928 CCAGAGTCGGCAAGCACC 60.744 66.667 0.00 0.00 0.00 5.01
1557 1685 1.112113 TCCAGATAACCAGAGTCGGC 58.888 55.000 1.54 0.00 0.00 5.54
1558 1686 2.761208 AGTTCCAGATAACCAGAGTCGG 59.239 50.000 0.23 0.23 0.00 4.79
1559 1687 3.697045 AGAGTTCCAGATAACCAGAGTCG 59.303 47.826 0.00 0.00 0.00 4.18
1560 1688 4.707448 TGAGAGTTCCAGATAACCAGAGTC 59.293 45.833 0.00 0.00 0.00 3.36
1561 1689 4.678256 TGAGAGTTCCAGATAACCAGAGT 58.322 43.478 0.00 0.00 0.00 3.24
1562 1690 5.186797 ACTTGAGAGTTCCAGATAACCAGAG 59.813 44.000 0.00 0.00 29.87 3.35
1563 1691 5.047021 CACTTGAGAGTTCCAGATAACCAGA 60.047 44.000 0.00 0.00 32.54 3.86
1564 1692 5.174395 CACTTGAGAGTTCCAGATAACCAG 58.826 45.833 0.00 0.00 32.54 4.00
1565 1693 4.563580 GCACTTGAGAGTTCCAGATAACCA 60.564 45.833 0.00 0.00 32.54 3.67
1566 1694 3.935828 GCACTTGAGAGTTCCAGATAACC 59.064 47.826 0.00 0.00 32.54 2.85
1567 1695 4.826556 AGCACTTGAGAGTTCCAGATAAC 58.173 43.478 0.00 0.00 32.54 1.89
1568 1696 4.774726 AGAGCACTTGAGAGTTCCAGATAA 59.225 41.667 0.00 0.00 32.54 1.75
1569 1697 4.348486 AGAGCACTTGAGAGTTCCAGATA 58.652 43.478 0.00 0.00 32.54 1.98
1570 1698 3.172339 AGAGCACTTGAGAGTTCCAGAT 58.828 45.455 0.00 0.00 32.54 2.90
1571 1699 2.603021 AGAGCACTTGAGAGTTCCAGA 58.397 47.619 0.00 0.00 32.54 3.86
1572 1700 3.399440 AAGAGCACTTGAGAGTTCCAG 57.601 47.619 0.00 0.00 34.80 3.86
1573 1701 5.240891 CAATAAGAGCACTTGAGAGTTCCA 58.759 41.667 6.66 0.00 37.53 3.53
1574 1702 4.094146 GCAATAAGAGCACTTGAGAGTTCC 59.906 45.833 6.66 0.00 37.53 3.62
1575 1703 4.934602 AGCAATAAGAGCACTTGAGAGTTC 59.065 41.667 6.66 0.00 37.53 3.01
1576 1704 4.694509 CAGCAATAAGAGCACTTGAGAGTT 59.305 41.667 6.66 0.00 37.53 3.01
1577 1705 4.252073 CAGCAATAAGAGCACTTGAGAGT 58.748 43.478 6.66 0.00 37.53 3.24
1578 1706 3.622163 CCAGCAATAAGAGCACTTGAGAG 59.378 47.826 6.66 0.00 37.53 3.20
1579 1707 3.261643 TCCAGCAATAAGAGCACTTGAGA 59.738 43.478 6.66 0.00 37.53 3.27
1580 1708 3.603532 TCCAGCAATAAGAGCACTTGAG 58.396 45.455 6.66 0.00 37.53 3.02
1581 1709 3.701205 TCCAGCAATAAGAGCACTTGA 57.299 42.857 6.66 0.00 37.53 3.02
1582 1710 3.066342 CCATCCAGCAATAAGAGCACTTG 59.934 47.826 6.66 0.00 37.53 3.16
1583 1711 3.285484 CCATCCAGCAATAAGAGCACTT 58.715 45.455 1.05 1.05 39.81 3.16
1584 1712 2.422519 CCCATCCAGCAATAAGAGCACT 60.423 50.000 0.00 0.00 0.00 4.40
1585 1713 1.952296 CCCATCCAGCAATAAGAGCAC 59.048 52.381 0.00 0.00 0.00 4.40
1586 1714 1.133699 CCCCATCCAGCAATAAGAGCA 60.134 52.381 0.00 0.00 0.00 4.26
1587 1715 1.143684 TCCCCATCCAGCAATAAGAGC 59.856 52.381 0.00 0.00 0.00 4.09
1588 1716 3.582998 TTCCCCATCCAGCAATAAGAG 57.417 47.619 0.00 0.00 0.00 2.85
1589 1717 4.079269 TCAATTCCCCATCCAGCAATAAGA 60.079 41.667 0.00 0.00 0.00 2.10
1590 1718 4.217510 TCAATTCCCCATCCAGCAATAAG 58.782 43.478 0.00 0.00 0.00 1.73
1662 1819 6.016024 TGCTGAAATGAACTACTGCTTTTGAT 60.016 34.615 0.00 0.00 0.00 2.57
1670 1827 4.694509 AGAAGCTGCTGAAATGAACTACTG 59.305 41.667 1.35 0.00 0.00 2.74
1674 1831 3.748083 TCAGAAGCTGCTGAAATGAACT 58.252 40.909 22.83 0.00 41.65 3.01
1675 1832 4.698583 ATCAGAAGCTGCTGAAATGAAC 57.301 40.909 28.30 0.00 46.94 3.18
1685 1842 3.808726 CAGAGATGGTAATCAGAAGCTGC 59.191 47.826 0.00 0.00 35.03 5.25
1690 1847 3.519107 TGTGGCAGAGATGGTAATCAGAA 59.481 43.478 0.00 0.00 35.03 3.02
1692 1849 3.201290 GTGTGGCAGAGATGGTAATCAG 58.799 50.000 0.00 0.00 35.03 2.90
1695 1852 1.831106 TCGTGTGGCAGAGATGGTAAT 59.169 47.619 0.00 0.00 0.00 1.89
1700 1857 1.730501 ACAATCGTGTGGCAGAGATG 58.269 50.000 0.00 0.00 36.31 2.90
1713 1870 7.851822 ACTTACATTACAAAAAGCACAATCG 57.148 32.000 0.00 0.00 0.00 3.34
1729 1886 7.754924 CGCATCATCAACCTAAAAACTTACATT 59.245 33.333 0.00 0.00 0.00 2.71
1730 1887 7.250569 CGCATCATCAACCTAAAAACTTACAT 58.749 34.615 0.00 0.00 0.00 2.29
1731 1888 6.607689 CGCATCATCAACCTAAAAACTTACA 58.392 36.000 0.00 0.00 0.00 2.41
1732 1889 5.511729 GCGCATCATCAACCTAAAAACTTAC 59.488 40.000 0.30 0.00 0.00 2.34
1733 1890 5.414454 AGCGCATCATCAACCTAAAAACTTA 59.586 36.000 11.47 0.00 0.00 2.24
1734 1891 4.218417 AGCGCATCATCAACCTAAAAACTT 59.782 37.500 11.47 0.00 0.00 2.66
1735 1892 3.758554 AGCGCATCATCAACCTAAAAACT 59.241 39.130 11.47 0.00 0.00 2.66
1736 1893 4.096732 AGCGCATCATCAACCTAAAAAC 57.903 40.909 11.47 0.00 0.00 2.43
1737 1894 3.755905 TGAGCGCATCATCAACCTAAAAA 59.244 39.130 11.47 0.00 31.12 1.94
1738 1895 3.126858 GTGAGCGCATCATCAACCTAAAA 59.873 43.478 11.47 0.00 40.92 1.52
1739 1896 2.677836 GTGAGCGCATCATCAACCTAAA 59.322 45.455 11.47 0.00 40.92 1.85
1740 1897 2.279741 GTGAGCGCATCATCAACCTAA 58.720 47.619 11.47 0.00 40.92 2.69
1741 1898 1.206849 TGTGAGCGCATCATCAACCTA 59.793 47.619 11.47 0.00 40.92 3.08
1742 1899 0.036105 TGTGAGCGCATCATCAACCT 60.036 50.000 11.47 0.00 40.92 3.50
1743 1900 0.376152 CTGTGAGCGCATCATCAACC 59.624 55.000 11.47 0.00 40.92 3.77
1744 1901 1.081892 ACTGTGAGCGCATCATCAAC 58.918 50.000 11.47 0.36 40.92 3.18
1745 1902 2.671130 TACTGTGAGCGCATCATCAA 57.329 45.000 11.47 0.60 40.92 2.57
1746 1903 2.094026 ACTTACTGTGAGCGCATCATCA 60.094 45.455 11.47 0.34 40.92 3.07
1747 1904 2.544685 ACTTACTGTGAGCGCATCATC 58.455 47.619 11.47 0.00 40.92 2.92
1748 1905 2.680312 ACTTACTGTGAGCGCATCAT 57.320 45.000 11.47 0.00 40.92 2.45
1749 1906 2.455674 AACTTACTGTGAGCGCATCA 57.544 45.000 11.47 7.90 34.79 3.07
1750 1907 3.250744 TGTAACTTACTGTGAGCGCATC 58.749 45.455 11.47 4.91 0.00 3.91
1751 1908 3.313012 TGTAACTTACTGTGAGCGCAT 57.687 42.857 11.47 0.00 0.00 4.73
1752 1909 2.804697 TGTAACTTACTGTGAGCGCA 57.195 45.000 11.47 0.00 0.00 6.09
1753 1910 4.663636 AAATGTAACTTACTGTGAGCGC 57.336 40.909 0.00 0.00 0.00 5.92
1754 1911 6.185399 GCATAAATGTAACTTACTGTGAGCG 58.815 40.000 0.00 0.00 0.00 5.03
1755 1912 6.183360 ACGCATAAATGTAACTTACTGTGAGC 60.183 38.462 0.00 0.00 0.00 4.26
1756 1913 7.290857 ACGCATAAATGTAACTTACTGTGAG 57.709 36.000 0.00 0.00 0.00 3.51
1757 1914 7.661127 AACGCATAAATGTAACTTACTGTGA 57.339 32.000 0.71 0.00 0.00 3.58
1758 1915 8.114290 CCTAACGCATAAATGTAACTTACTGTG 58.886 37.037 0.71 0.16 0.00 3.66
1759 1916 7.201582 GCCTAACGCATAAATGTAACTTACTGT 60.202 37.037 0.71 0.00 37.47 3.55
1760 1917 7.123830 GCCTAACGCATAAATGTAACTTACTG 58.876 38.462 0.71 0.00 37.47 2.74
1761 1918 6.819649 TGCCTAACGCATAAATGTAACTTACT 59.180 34.615 0.71 0.00 44.64 2.24
1762 1919 7.007313 TGCCTAACGCATAAATGTAACTTAC 57.993 36.000 0.00 0.00 44.64 2.34
1777 1934 0.237498 GTTGGTTCTGTGCCTAACGC 59.763 55.000 0.00 0.00 38.31 4.84
1778 1935 1.531149 CAGTTGGTTCTGTGCCTAACG 59.469 52.381 0.00 0.00 0.00 3.18
1779 1936 2.572290 ACAGTTGGTTCTGTGCCTAAC 58.428 47.619 0.00 0.00 45.40 2.34
1780 1937 4.634012 ATACAGTTGGTTCTGTGCCTAA 57.366 40.909 9.21 0.00 46.36 2.69
1781 1938 4.202419 ACAATACAGTTGGTTCTGTGCCTA 60.202 41.667 9.21 0.00 46.36 3.93
1782 1939 3.149196 CAATACAGTTGGTTCTGTGCCT 58.851 45.455 9.21 0.00 46.36 4.75
1783 1940 2.884639 ACAATACAGTTGGTTCTGTGCC 59.115 45.455 9.21 0.00 46.36 5.01
1784 1941 4.036262 TCAACAATACAGTTGGTTCTGTGC 59.964 41.667 9.21 0.00 46.74 4.57
1785 1942 5.749596 TCAACAATACAGTTGGTTCTGTG 57.250 39.130 9.21 0.00 46.74 3.66
1786 1943 5.220777 CGTTCAACAATACAGTTGGTTCTGT 60.221 40.000 6.95 4.79 46.74 3.41
1787 1944 5.204833 CGTTCAACAATACAGTTGGTTCTG 58.795 41.667 6.95 0.00 46.74 3.02
1788 1945 4.879545 ACGTTCAACAATACAGTTGGTTCT 59.120 37.500 6.95 0.00 46.74 3.01
1789 1946 4.967575 CACGTTCAACAATACAGTTGGTTC 59.032 41.667 6.95 0.00 46.74 3.62
1790 1947 4.396790 ACACGTTCAACAATACAGTTGGTT 59.603 37.500 6.95 0.00 46.74 3.67
1791 1948 3.942748 ACACGTTCAACAATACAGTTGGT 59.057 39.130 6.95 0.00 46.74 3.67
1792 1949 4.545823 ACACGTTCAACAATACAGTTGG 57.454 40.909 6.95 0.00 46.74 3.77
1794 1951 4.201970 CCCAACACGTTCAACAATACAGTT 60.202 41.667 0.00 0.00 0.00 3.16
1795 1952 3.314080 CCCAACACGTTCAACAATACAGT 59.686 43.478 0.00 0.00 0.00 3.55
1796 1953 3.314080 ACCCAACACGTTCAACAATACAG 59.686 43.478 0.00 0.00 0.00 2.74
1797 1954 3.280295 ACCCAACACGTTCAACAATACA 58.720 40.909 0.00 0.00 0.00 2.29
1798 1955 3.974871 ACCCAACACGTTCAACAATAC 57.025 42.857 0.00 0.00 0.00 1.89
1799 1956 4.985538 AAACCCAACACGTTCAACAATA 57.014 36.364 0.00 0.00 0.00 1.90
1800 1957 3.878160 AAACCCAACACGTTCAACAAT 57.122 38.095 0.00 0.00 0.00 2.71
1801 1958 4.217983 AGTTAAACCCAACACGTTCAACAA 59.782 37.500 0.00 0.00 0.00 2.83
1802 1959 3.757493 AGTTAAACCCAACACGTTCAACA 59.243 39.130 0.00 0.00 0.00 3.33
1803 1960 4.099824 CAGTTAAACCCAACACGTTCAAC 58.900 43.478 0.00 0.00 0.00 3.18
1804 1961 4.008330 TCAGTTAAACCCAACACGTTCAA 58.992 39.130 0.00 0.00 0.00 2.69
1805 1962 3.607741 TCAGTTAAACCCAACACGTTCA 58.392 40.909 0.00 0.00 0.00 3.18
1806 1963 3.547413 GCTCAGTTAAACCCAACACGTTC 60.547 47.826 0.00 0.00 0.00 3.95
1807 1964 2.356695 GCTCAGTTAAACCCAACACGTT 59.643 45.455 0.00 0.00 0.00 3.99
1808 1965 1.944709 GCTCAGTTAAACCCAACACGT 59.055 47.619 0.00 0.00 0.00 4.49
1809 1966 1.944024 TGCTCAGTTAAACCCAACACG 59.056 47.619 0.00 0.00 0.00 4.49
1810 1967 2.286772 CGTGCTCAGTTAAACCCAACAC 60.287 50.000 0.00 0.00 0.00 3.32
1811 1968 1.944024 CGTGCTCAGTTAAACCCAACA 59.056 47.619 0.00 0.00 0.00 3.33
1812 1969 1.334689 GCGTGCTCAGTTAAACCCAAC 60.335 52.381 0.00 0.00 0.00 3.77
1813 1970 0.948678 GCGTGCTCAGTTAAACCCAA 59.051 50.000 0.00 0.00 0.00 4.12
1814 1971 0.179043 TGCGTGCTCAGTTAAACCCA 60.179 50.000 0.00 0.00 0.00 4.51
1815 1972 0.517316 CTGCGTGCTCAGTTAAACCC 59.483 55.000 0.00 0.00 0.00 4.11
1816 1973 1.461127 CTCTGCGTGCTCAGTTAAACC 59.539 52.381 0.00 0.00 35.63 3.27
1817 1974 1.136224 GCTCTGCGTGCTCAGTTAAAC 60.136 52.381 0.00 0.00 35.63 2.01
1818 1975 1.148310 GCTCTGCGTGCTCAGTTAAA 58.852 50.000 0.00 0.00 35.63 1.52
1819 1976 0.318441 AGCTCTGCGTGCTCAGTTAA 59.682 50.000 0.00 0.00 35.67 2.01
1820 1977 0.318441 AAGCTCTGCGTGCTCAGTTA 59.682 50.000 5.78 0.00 40.22 2.24
1821 1978 1.070445 AAGCTCTGCGTGCTCAGTT 59.930 52.632 5.78 0.00 40.22 3.16
1822 1979 1.667191 CAAGCTCTGCGTGCTCAGT 60.667 57.895 5.78 0.00 40.22 3.41
1823 1980 1.373873 TCAAGCTCTGCGTGCTCAG 60.374 57.895 5.78 0.00 40.22 3.35
1824 1981 1.665916 GTCAAGCTCTGCGTGCTCA 60.666 57.895 5.78 0.00 40.22 4.26
1825 1982 1.350706 GAGTCAAGCTCTGCGTGCTC 61.351 60.000 11.25 11.25 40.22 4.26
1826 1983 1.373999 GAGTCAAGCTCTGCGTGCT 60.374 57.895 0.00 2.31 43.32 4.40
1827 1984 3.163655 GAGTCAAGCTCTGCGTGC 58.836 61.111 0.00 0.00 40.98 5.34
1834 1991 3.194062 GCAGATAACCAGAGTCAAGCTC 58.806 50.000 0.00 0.00 44.45 4.09
1835 1992 2.568956 TGCAGATAACCAGAGTCAAGCT 59.431 45.455 0.00 0.00 0.00 3.74
1836 1993 2.977914 TGCAGATAACCAGAGTCAAGC 58.022 47.619 0.00 0.00 0.00 4.01
1837 1994 4.573900 ACTTGCAGATAACCAGAGTCAAG 58.426 43.478 0.00 0.00 36.64 3.02
1838 1995 4.623932 ACTTGCAGATAACCAGAGTCAA 57.376 40.909 0.00 0.00 0.00 3.18
1839 1996 4.772624 ACTACTTGCAGATAACCAGAGTCA 59.227 41.667 0.00 0.00 0.00 3.41
1840 1997 5.331876 ACTACTTGCAGATAACCAGAGTC 57.668 43.478 0.00 0.00 0.00 3.36
1841 1998 5.012148 ACAACTACTTGCAGATAACCAGAGT 59.988 40.000 0.00 0.00 0.00 3.24
1842 1999 5.482908 ACAACTACTTGCAGATAACCAGAG 58.517 41.667 0.00 0.00 0.00 3.35
1843 2000 5.483685 ACAACTACTTGCAGATAACCAGA 57.516 39.130 0.00 0.00 0.00 3.86
1844 2001 6.398918 AGTACAACTACTTGCAGATAACCAG 58.601 40.000 0.00 0.00 27.62 4.00
1845 2002 6.354794 AGTACAACTACTTGCAGATAACCA 57.645 37.500 0.00 0.00 27.62 3.67
1846 2003 7.752557 GTAGTACAACTACTTGCAGATAACC 57.247 40.000 9.46 0.00 45.70 2.85
1869 2026 9.284968 AGCAATCACTAACAAAGTAACAATAGT 57.715 29.630 0.00 0.00 35.76 2.12
1872 2029 8.850156 AGAAGCAATCACTAACAAAGTAACAAT 58.150 29.630 0.00 0.00 35.76 2.71
1873 2030 8.128582 CAGAAGCAATCACTAACAAAGTAACAA 58.871 33.333 0.00 0.00 35.76 2.83
1874 2031 7.282224 ACAGAAGCAATCACTAACAAAGTAACA 59.718 33.333 0.00 0.00 35.76 2.41
1875 2032 7.587757 CACAGAAGCAATCACTAACAAAGTAAC 59.412 37.037 0.00 0.00 35.76 2.50
1876 2033 7.497579 TCACAGAAGCAATCACTAACAAAGTAA 59.502 33.333 0.00 0.00 35.76 2.24
1877 2034 6.989759 TCACAGAAGCAATCACTAACAAAGTA 59.010 34.615 0.00 0.00 35.76 2.24
1878 2035 5.822519 TCACAGAAGCAATCACTAACAAAGT 59.177 36.000 0.00 0.00 39.81 2.66
1879 2036 6.304356 TCACAGAAGCAATCACTAACAAAG 57.696 37.500 0.00 0.00 0.00 2.77
1880 2037 6.882610 ATCACAGAAGCAATCACTAACAAA 57.117 33.333 0.00 0.00 0.00 2.83
1881 2038 6.882610 AATCACAGAAGCAATCACTAACAA 57.117 33.333 0.00 0.00 0.00 2.83
1882 2039 6.486320 TCAAATCACAGAAGCAATCACTAACA 59.514 34.615 0.00 0.00 0.00 2.41
1883 2040 6.902341 TCAAATCACAGAAGCAATCACTAAC 58.098 36.000 0.00 0.00 0.00 2.34
1884 2041 7.692460 ATCAAATCACAGAAGCAATCACTAA 57.308 32.000 0.00 0.00 0.00 2.24
1885 2042 7.692460 AATCAAATCACAGAAGCAATCACTA 57.308 32.000 0.00 0.00 0.00 2.74
1886 2043 6.585695 AATCAAATCACAGAAGCAATCACT 57.414 33.333 0.00 0.00 0.00 3.41
1887 2044 6.643770 ACAAATCAAATCACAGAAGCAATCAC 59.356 34.615 0.00 0.00 0.00 3.06
1888 2045 6.751157 ACAAATCAAATCACAGAAGCAATCA 58.249 32.000 0.00 0.00 0.00 2.57
1889 2046 8.025445 AGTACAAATCAAATCACAGAAGCAATC 58.975 33.333 0.00 0.00 0.00 2.67
1890 2047 7.889469 AGTACAAATCAAATCACAGAAGCAAT 58.111 30.769 0.00 0.00 0.00 3.56
1891 2048 7.275888 AGTACAAATCAAATCACAGAAGCAA 57.724 32.000 0.00 0.00 0.00 3.91
1892 2049 6.882610 AGTACAAATCAAATCACAGAAGCA 57.117 33.333 0.00 0.00 0.00 3.91
1893 2050 8.256611 TCTAGTACAAATCAAATCACAGAAGC 57.743 34.615 0.00 0.00 0.00 3.86
1895 2052 9.778741 ACTTCTAGTACAAATCAAATCACAGAA 57.221 29.630 0.00 0.00 0.00 3.02
1896 2053 9.778741 AACTTCTAGTACAAATCAAATCACAGA 57.221 29.630 0.00 0.00 0.00 3.41
1909 2066 8.684520 GGCAGAGATTAGTAACTTCTAGTACAA 58.315 37.037 0.00 0.00 0.00 2.41
1910 2067 7.832685 TGGCAGAGATTAGTAACTTCTAGTACA 59.167 37.037 0.00 0.00 0.00 2.90
1911 2068 8.130469 GTGGCAGAGATTAGTAACTTCTAGTAC 58.870 40.741 0.00 0.00 0.00 2.73
1912 2069 7.012138 CGTGGCAGAGATTAGTAACTTCTAGTA 59.988 40.741 0.00 0.00 0.00 1.82
1913 2070 6.183360 CGTGGCAGAGATTAGTAACTTCTAGT 60.183 42.308 0.00 0.00 0.00 2.57
1914 2071 6.183360 ACGTGGCAGAGATTAGTAACTTCTAG 60.183 42.308 0.00 0.00 0.00 2.43
1915 2072 5.651139 ACGTGGCAGAGATTAGTAACTTCTA 59.349 40.000 0.00 0.00 0.00 2.10
1916 2073 4.463186 ACGTGGCAGAGATTAGTAACTTCT 59.537 41.667 0.00 0.00 0.00 2.85
1917 2074 4.563184 CACGTGGCAGAGATTAGTAACTTC 59.437 45.833 7.95 0.00 0.00 3.01
1918 2075 4.219944 TCACGTGGCAGAGATTAGTAACTT 59.780 41.667 17.00 0.00 0.00 2.66
1919 2076 3.762288 TCACGTGGCAGAGATTAGTAACT 59.238 43.478 17.00 0.00 0.00 2.24
1920 2077 4.106029 TCACGTGGCAGAGATTAGTAAC 57.894 45.455 17.00 0.00 0.00 2.50
1921 2078 5.109210 CAATCACGTGGCAGAGATTAGTAA 58.891 41.667 17.00 0.00 31.85 2.24
1922 2079 4.682787 CAATCACGTGGCAGAGATTAGTA 58.317 43.478 17.00 0.00 31.85 1.82
1923 2080 3.525537 CAATCACGTGGCAGAGATTAGT 58.474 45.455 17.00 0.00 31.85 2.24
1924 2081 2.286294 GCAATCACGTGGCAGAGATTAG 59.714 50.000 17.00 3.69 31.85 1.73
1925 2082 2.279741 GCAATCACGTGGCAGAGATTA 58.720 47.619 17.00 0.00 31.85 1.75
1926 2083 1.089920 GCAATCACGTGGCAGAGATT 58.910 50.000 17.00 3.79 32.95 2.40
1927 2084 1.086067 CGCAATCACGTGGCAGAGAT 61.086 55.000 17.00 0.00 0.00 2.75
1928 2085 1.737735 CGCAATCACGTGGCAGAGA 60.738 57.895 17.00 0.00 0.00 3.10
1929 2086 2.780643 CGCAATCACGTGGCAGAG 59.219 61.111 17.00 3.61 0.00 3.35
1930 2087 3.422303 GCGCAATCACGTGGCAGA 61.422 61.111 17.00 0.00 34.88 4.26
1931 2088 1.634757 TAAGCGCAATCACGTGGCAG 61.635 55.000 17.00 6.69 34.88 4.85
1932 2089 1.024046 ATAAGCGCAATCACGTGGCA 61.024 50.000 17.00 0.00 34.88 4.92
1933 2090 0.589729 CATAAGCGCAATCACGTGGC 60.590 55.000 17.00 10.76 34.88 5.01
1934 2091 0.726827 ACATAAGCGCAATCACGTGG 59.273 50.000 17.00 0.08 34.88 4.94
1935 2092 2.597505 GCTACATAAGCGCAATCACGTG 60.598 50.000 11.47 9.94 42.53 4.49
1936 2093 1.593006 GCTACATAAGCGCAATCACGT 59.407 47.619 11.47 0.85 42.53 4.49
1937 2094 2.285319 GCTACATAAGCGCAATCACG 57.715 50.000 11.47 0.00 42.53 4.35
1950 2107 8.850156 GGATTGTGGAAACTTATATTGCTACAT 58.150 33.333 0.00 0.00 0.00 2.29
1951 2108 8.052748 AGGATTGTGGAAACTTATATTGCTACA 58.947 33.333 0.00 0.00 0.00 2.74
1952 2109 8.451908 AGGATTGTGGAAACTTATATTGCTAC 57.548 34.615 0.00 0.00 0.00 3.58
1954 2111 7.961326 AAGGATTGTGGAAACTTATATTGCT 57.039 32.000 0.00 0.00 0.00 3.91
1955 2112 9.683069 CATAAGGATTGTGGAAACTTATATTGC 57.317 33.333 0.00 0.00 33.15 3.56
1960 2117 9.927668 CAAAACATAAGGATTGTGGAAACTTAT 57.072 29.630 0.00 0.00 41.94 1.73
1961 2118 7.870445 GCAAAACATAAGGATTGTGGAAACTTA 59.130 33.333 0.00 0.00 41.94 2.24
1962 2119 6.705825 GCAAAACATAAGGATTGTGGAAACTT 59.294 34.615 0.00 0.00 41.94 2.66
1963 2120 6.183360 TGCAAAACATAAGGATTGTGGAAACT 60.183 34.615 0.00 0.00 41.94 2.66
1964 2121 5.988561 TGCAAAACATAAGGATTGTGGAAAC 59.011 36.000 0.00 0.00 41.94 2.78
1965 2122 6.166984 TGCAAAACATAAGGATTGTGGAAA 57.833 33.333 0.00 0.00 41.94 3.13
1966 2123 5.798125 TGCAAAACATAAGGATTGTGGAA 57.202 34.783 0.00 0.00 41.94 3.53
1967 2124 5.999205 ATGCAAAACATAAGGATTGTGGA 57.001 34.783 0.00 0.00 41.94 4.02
1968 2125 6.757947 CCTAATGCAAAACATAAGGATTGTGG 59.242 38.462 0.00 0.00 41.94 4.17
1969 2126 6.256321 GCCTAATGCAAAACATAAGGATTGTG 59.744 38.462 0.00 0.00 40.74 3.33
1970 2127 6.340522 GCCTAATGCAAAACATAAGGATTGT 58.659 36.000 0.00 0.00 38.34 2.71
1971 2128 5.459762 CGCCTAATGCAAAACATAAGGATTG 59.540 40.000 0.00 0.00 38.34 2.67
1972 2129 5.359576 TCGCCTAATGCAAAACATAAGGATT 59.640 36.000 0.00 0.00 38.34 3.01
1973 2130 4.887071 TCGCCTAATGCAAAACATAAGGAT 59.113 37.500 0.00 0.00 38.34 3.24
1974 2131 4.265893 TCGCCTAATGCAAAACATAAGGA 58.734 39.130 0.00 0.00 38.34 3.36
1978 2135 6.317642 ACATAACTCGCCTAATGCAAAACATA 59.682 34.615 0.00 0.00 38.34 2.29
1981 2138 4.981794 ACATAACTCGCCTAATGCAAAAC 58.018 39.130 0.00 0.00 41.33 2.43
1984 2141 3.202906 GGACATAACTCGCCTAATGCAA 58.797 45.455 0.00 0.00 41.33 4.08
1990 2147 2.545113 GCGATTGGACATAACTCGCCTA 60.545 50.000 4.03 0.00 46.55 3.93
1994 2151 1.217882 GGGCGATTGGACATAACTCG 58.782 55.000 0.00 0.00 0.00 4.18
1999 2156 2.825982 CCCGGGCGATTGGACATA 59.174 61.111 8.08 0.00 0.00 2.29
2000 2157 4.875713 GCCCGGGCGATTGGACAT 62.876 66.667 33.60 0.00 0.00 3.06
2013 2170 0.734889 CACAGCAGGAAATAAGCCCG 59.265 55.000 0.00 0.00 0.00 6.13
2062 2219 2.118132 CCATACATGGCAAGGCACC 58.882 57.895 0.00 0.00 41.75 5.01
2083 2240 7.552459 ACAAAGCAAACTACTACCAAAACAAT 58.448 30.769 0.00 0.00 0.00 2.71
2162 2323 7.533900 CGTAACAATTTTCAGAGTAACACCATG 59.466 37.037 0.00 0.00 0.00 3.66
2182 2343 5.224888 AGTCTAATTTTCTCACGCGTAACA 58.775 37.500 13.44 0.00 0.00 2.41
2183 2344 5.758570 AGTCTAATTTTCTCACGCGTAAC 57.241 39.130 13.44 0.00 0.00 2.50
2185 2346 6.187125 ACTAGTCTAATTTTCTCACGCGTA 57.813 37.500 13.44 0.00 0.00 4.42
2187 2348 5.345202 ACAACTAGTCTAATTTTCTCACGCG 59.655 40.000 3.53 3.53 0.00 6.01
2208 2369 2.297033 GCTTCCAGCAAGAAATGGACAA 59.703 45.455 0.00 0.00 45.20 3.18
2215 2376 1.956477 GGAACAGCTTCCAGCAAGAAA 59.044 47.619 0.00 0.00 45.56 2.52
2428 2596 1.296715 CCTCCATATGCCTACGCCC 59.703 63.158 0.00 0.00 0.00 6.13
2429 2597 1.376037 GCCTCCATATGCCTACGCC 60.376 63.158 0.00 0.00 0.00 5.68
2430 2598 0.895530 TAGCCTCCATATGCCTACGC 59.104 55.000 0.00 0.00 0.00 4.42
2431 2599 2.101582 GGATAGCCTCCATATGCCTACG 59.898 54.545 0.00 0.00 44.26 3.51
2432 2600 3.828875 GGATAGCCTCCATATGCCTAC 57.171 52.381 0.00 0.00 44.26 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.