Multiple sequence alignment - TraesCS5D01G063100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G063100 chr5D 100.000 4013 0 0 1 4013 58676492 58680504 0.000000e+00 7411.0
1 TraesCS5D01G063100 chr5D 84.044 2275 241 63 1135 3361 58659031 58661231 0.000000e+00 2078.0
2 TraesCS5D01G063100 chr5D 89.692 1135 96 13 1080 2196 58946843 58947974 0.000000e+00 1428.0
3 TraesCS5D01G063100 chr5D 93.701 381 22 2 620 998 59921291 59921671 1.620000e-158 569.0
4 TraesCS5D01G063100 chr5D 80.145 826 104 40 2259 3054 58947998 58948793 2.710000e-156 562.0
5 TraesCS5D01G063100 chr5D 93.750 288 14 2 342 625 520371530 520371243 2.870000e-116 429.0
6 TraesCS5D01G063100 chr5D 90.000 300 19 5 344 635 491287169 491286873 1.050000e-100 377.0
7 TraesCS5D01G063100 chr5D 93.254 252 15 2 1172 1422 58945961 58946211 1.760000e-98 370.0
8 TraesCS5D01G063100 chr5D 82.663 398 45 15 3448 3824 58663358 58663752 8.310000e-87 331.0
9 TraesCS5D01G063100 chr5B 93.583 2400 89 27 1053 3438 72252755 72255103 0.000000e+00 3518.0
10 TraesCS5D01G063100 chr5B 94.642 1717 52 13 1053 2758 63844117 63845804 0.000000e+00 2625.0
11 TraesCS5D01G063100 chr5B 84.558 2273 228 66 1135 3366 63631876 63634066 0.000000e+00 2139.0
12 TraesCS5D01G063100 chr5B 83.562 2111 210 73 1080 3120 72631476 72629433 0.000000e+00 1849.0
13 TraesCS5D01G063100 chr5B 93.544 697 39 3 2742 3438 63845974 63846664 0.000000e+00 1033.0
14 TraesCS5D01G063100 chr5B 91.434 572 34 8 3442 4013 63846751 63847307 0.000000e+00 771.0
15 TraesCS5D01G063100 chr5B 89.354 573 45 8 3442 4013 72255190 72255747 0.000000e+00 706.0
16 TraesCS5D01G063100 chr5B 89.354 573 45 8 3442 4013 72824473 72823916 0.000000e+00 706.0
17 TraesCS5D01G063100 chr5B 83.558 371 52 9 641 1007 545932479 545932114 4.970000e-89 339.0
18 TraesCS5D01G063100 chr5B 94.258 209 12 0 3236 3444 72824762 72824554 1.800000e-83 320.0
19 TraesCS5D01G063100 chr5B 93.333 45 2 1 1009 1053 72248905 72248948 9.310000e-07 65.8
20 TraesCS5D01G063100 chr5A 90.953 1039 52 15 1278 2313 47120790 47121789 0.000000e+00 1360.0
21 TraesCS5D01G063100 chr5A 93.850 374 22 1 623 995 660200743 660200370 2.710000e-156 562.0
22 TraesCS5D01G063100 chr5A 85.631 515 40 14 3508 4003 47126070 47126569 9.950000e-141 510.0
23 TraesCS5D01G063100 chr5A 84.309 376 50 5 623 996 121929993 121930361 3.810000e-95 359.0
24 TraesCS5D01G063100 chr5A 97.351 151 4 0 1135 1285 47115682 47115832 1.430000e-64 257.0
25 TraesCS5D01G063100 chr5A 94.118 119 4 2 2500 2615 47125050 47125168 1.150000e-40 178.0
26 TraesCS5D01G063100 chr5A 87.273 55 0 2 1053 1107 47115634 47115681 5.600000e-04 56.5
27 TraesCS5D01G063100 chr7B 77.842 1381 235 42 1240 2578 558211237 558212588 0.000000e+00 789.0
28 TraesCS5D01G063100 chr7B 80.579 932 157 15 1240 2150 558318238 558319166 0.000000e+00 697.0
29 TraesCS5D01G063100 chr7D 78.625 1207 204 31 1240 2414 523195511 523196695 0.000000e+00 750.0
30 TraesCS5D01G063100 chr7D 92.876 379 25 2 620 996 608419789 608420167 2.110000e-152 549.0
31 TraesCS5D01G063100 chr7D 92.042 289 18 2 342 625 412234482 412234194 6.250000e-108 401.0
32 TraesCS5D01G063100 chr7D 86.000 100 9 4 246 341 87511279 87511377 7.100000e-18 102.0
33 TraesCS5D01G063100 chr7D 94.286 35 2 0 298 332 64694015 64693981 2.000000e-03 54.7
34 TraesCS5D01G063100 chr6D 94.385 374 20 1 623 995 411765006 411764633 1.250000e-159 573.0
35 TraesCS5D01G063100 chr6D 93.369 377 22 3 620 994 50728063 50728438 4.530000e-154 555.0
36 TraesCS5D01G063100 chr6D 91.837 294 13 4 342 625 429002134 429002426 2.250000e-107 399.0
37 TraesCS5D01G063100 chr6D 91.379 290 19 2 342 625 75112792 75113081 3.760000e-105 392.0
38 TraesCS5D01G063100 chr6D 91.638 287 18 2 345 625 430018872 430018586 3.760000e-105 392.0
39 TraesCS5D01G063100 chr6D 85.200 250 29 6 1338 1583 61003130 61003375 2.390000e-62 250.0
40 TraesCS5D01G063100 chr6D 82.840 169 29 0 1331 1499 380576962 380576794 6.950000e-33 152.0
41 TraesCS5D01G063100 chr3D 93.421 380 24 1 623 1001 113788692 113788313 2.710000e-156 562.0
42 TraesCS5D01G063100 chr3D 93.850 374 20 3 620 992 565077095 565077466 9.740000e-156 560.0
43 TraesCS5D01G063100 chr3D 93.351 376 24 1 620 994 121901956 121902331 4.530000e-154 555.0
44 TraesCS5D01G063100 chr3D 75.868 634 111 31 1337 1955 134964188 134963582 6.560000e-73 285.0
45 TraesCS5D01G063100 chr3D 73.613 739 151 27 1264 1964 560198835 560198103 1.110000e-60 244.0
46 TraesCS5D01G063100 chr3D 83.562 219 28 7 1273 1490 560112554 560112343 8.800000e-47 198.0
47 TraesCS5D01G063100 chr1D 92.895 380 23 4 620 997 202849002 202849379 2.110000e-152 549.0
48 TraesCS5D01G063100 chr1D 91.696 289 16 3 342 625 467497884 467498169 1.050000e-105 394.0
49 TraesCS5D01G063100 chr1D 90.000 310 22 6 342 644 366488610 366488303 3.760000e-105 392.0
50 TraesCS5D01G063100 chr2D 89.091 385 36 6 623 1003 435155598 435155216 1.310000e-129 473.0
51 TraesCS5D01G063100 chr7A 88.402 388 42 3 620 1005 634713404 634713790 7.860000e-127 464.0
52 TraesCS5D01G063100 chr7A 84.794 388 50 8 620 1003 24447903 24448285 8.140000e-102 381.0
53 TraesCS5D01G063100 chr7A 85.556 90 13 0 252 341 57704835 57704924 1.190000e-15 95.3
54 TraesCS5D01G063100 chr1A 88.402 388 39 6 623 1005 60529391 60529777 2.830000e-126 462.0
55 TraesCS5D01G063100 chr3A 88.021 384 43 3 623 1004 747049405 747049787 6.120000e-123 451.0
56 TraesCS5D01G063100 chr4A 86.753 385 43 6 623 1003 743397568 743397188 4.800000e-114 422.0
57 TraesCS5D01G063100 chr4D 90.541 296 16 3 342 625 42263544 42263249 8.140000e-102 381.0
58 TraesCS5D01G063100 chr4D 75.524 715 131 32 1281 1955 93612635 93611925 1.080000e-80 311.0
59 TraesCS5D01G063100 chr4D 76.829 410 55 22 1271 1677 418854471 418854099 1.140000e-45 195.0
60 TraesCS5D01G063100 chr2B 84.921 378 52 5 620 994 787047087 787047462 1.050000e-100 377.0
61 TraesCS5D01G063100 chr4B 75.354 706 132 30 1287 1955 132056501 132055801 6.520000e-78 302.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G063100 chr5D 58676492 58680504 4012 False 7411.000000 7411 100.000000 1 4013 1 chr5D.!!$F1 4012
1 TraesCS5D01G063100 chr5D 58659031 58663752 4721 False 1204.500000 2078 83.353500 1135 3824 2 chr5D.!!$F3 2689
2 TraesCS5D01G063100 chr5D 58945961 58948793 2832 False 786.666667 1428 87.697000 1080 3054 3 chr5D.!!$F4 1974
3 TraesCS5D01G063100 chr5B 63631876 63634066 2190 False 2139.000000 2139 84.558000 1135 3366 1 chr5B.!!$F1 2231
4 TraesCS5D01G063100 chr5B 72629433 72631476 2043 True 1849.000000 1849 83.562000 1080 3120 1 chr5B.!!$R1 2040
5 TraesCS5D01G063100 chr5B 63844117 63847307 3190 False 1476.333333 2625 93.206667 1053 4013 3 chr5B.!!$F2 2960
6 TraesCS5D01G063100 chr5B 72248905 72255747 6842 False 1429.933333 3518 92.090000 1009 4013 3 chr5B.!!$F3 3004
7 TraesCS5D01G063100 chr5B 72823916 72824762 846 True 513.000000 706 91.806000 3236 4013 2 chr5B.!!$R3 777
8 TraesCS5D01G063100 chr5A 47120790 47126569 5779 False 682.666667 1360 90.234000 1278 4003 3 chr5A.!!$F3 2725
9 TraesCS5D01G063100 chr7B 558211237 558212588 1351 False 789.000000 789 77.842000 1240 2578 1 chr7B.!!$F1 1338
10 TraesCS5D01G063100 chr7B 558318238 558319166 928 False 697.000000 697 80.579000 1240 2150 1 chr7B.!!$F2 910
11 TraesCS5D01G063100 chr7D 523195511 523196695 1184 False 750.000000 750 78.625000 1240 2414 1 chr7D.!!$F2 1174
12 TraesCS5D01G063100 chr3D 134963582 134964188 606 True 285.000000 285 75.868000 1337 1955 1 chr3D.!!$R2 618
13 TraesCS5D01G063100 chr3D 560198103 560198835 732 True 244.000000 244 73.613000 1264 1964 1 chr3D.!!$R4 700
14 TraesCS5D01G063100 chr4D 93611925 93612635 710 True 311.000000 311 75.524000 1281 1955 1 chr4D.!!$R2 674
15 TraesCS5D01G063100 chr4B 132055801 132056501 700 True 302.000000 302 75.354000 1287 1955 1 chr4B.!!$R1 668

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
742 743 0.035439 GGGAAACAAGGCGATGAGGA 60.035 55.0 0.26 0.0 0.00 3.71 F
746 747 0.389948 AACAAGGCGATGAGGACGAC 60.390 55.0 0.00 0.0 39.24 4.34 F
1980 5853 0.171231 TTCGTCATGGAGAGCGTCAG 59.829 55.0 0.00 0.0 0.00 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1705 5569 0.976641 TGGAGATGGTGAAGAGCGTT 59.023 50.000 0.0 0.0 0.00 4.84 R
2463 9602 1.202065 CGTGAACATTTCATCGGCAGG 60.202 52.381 0.0 0.0 42.47 4.85 R
3836 13350 0.179000 CCATAGACCACACAGCTCCC 59.821 60.000 0.0 0.0 0.00 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.520748 CCTGCCCCTCATTTTATATAGGT 57.479 43.478 0.00 0.00 0.00 3.08
24 25 7.213178 CCTGCCCCTCATTTTATATAGGTAT 57.787 40.000 0.00 0.00 0.00 2.73
25 26 7.283329 CCTGCCCCTCATTTTATATAGGTATC 58.717 42.308 0.00 0.00 0.00 2.24
26 27 6.884832 TGCCCCTCATTTTATATAGGTATCG 58.115 40.000 0.00 0.00 0.00 2.92
27 28 6.670464 TGCCCCTCATTTTATATAGGTATCGA 59.330 38.462 0.00 0.00 0.00 3.59
28 29 7.147724 TGCCCCTCATTTTATATAGGTATCGAG 60.148 40.741 0.00 0.00 0.00 4.04
29 30 7.069578 GCCCCTCATTTTATATAGGTATCGAGA 59.930 40.741 0.00 0.00 0.00 4.04
31 32 8.634444 CCCTCATTTTATATAGGTATCGAGAGG 58.366 40.741 0.00 0.00 36.92 3.69
35 36 5.728937 TTATATAGGTATCGAGAGGGCCT 57.271 43.478 5.25 5.25 0.00 5.19
36 37 6.836714 TTATATAGGTATCGAGAGGGCCTA 57.163 41.667 5.73 0.00 35.14 3.93
38 39 1.150872 AGGTATCGAGAGGGCCTAGT 58.849 55.000 5.73 0.00 0.00 2.57
40 41 1.158434 GTATCGAGAGGGCCTAGTCG 58.842 60.000 24.97 24.97 0.00 4.18
41 42 0.036448 TATCGAGAGGGCCTAGTCGG 59.964 60.000 28.25 15.41 33.21 4.79
42 43 1.997256 ATCGAGAGGGCCTAGTCGGT 61.997 60.000 28.25 22.70 33.21 4.69
43 44 1.753463 CGAGAGGGCCTAGTCGGTT 60.753 63.158 23.78 0.00 34.25 4.44
45 46 1.031235 GAGAGGGCCTAGTCGGTTAC 58.969 60.000 5.73 0.00 34.25 2.50
46 47 0.630134 AGAGGGCCTAGTCGGTTACT 59.370 55.000 5.73 0.00 42.62 2.24
47 48 1.006878 AGAGGGCCTAGTCGGTTACTT 59.993 52.381 5.73 0.00 39.80 2.24
48 49 2.243221 AGAGGGCCTAGTCGGTTACTTA 59.757 50.000 5.73 0.00 39.80 2.24
51 52 2.497273 GGGCCTAGTCGGTTACTTACAA 59.503 50.000 0.84 0.00 39.80 2.41
52 53 3.055891 GGGCCTAGTCGGTTACTTACAAA 60.056 47.826 0.84 0.00 39.80 2.83
53 54 4.179298 GGCCTAGTCGGTTACTTACAAAG 58.821 47.826 0.00 0.00 39.80 2.77
54 55 4.082026 GGCCTAGTCGGTTACTTACAAAGA 60.082 45.833 0.00 0.00 39.80 2.52
55 56 5.100943 GCCTAGTCGGTTACTTACAAAGAG 58.899 45.833 0.00 0.00 39.80 2.85
56 57 5.105997 GCCTAGTCGGTTACTTACAAAGAGA 60.106 44.000 0.00 0.00 39.80 3.10
57 58 6.571150 GCCTAGTCGGTTACTTACAAAGAGAA 60.571 42.308 0.00 0.00 39.80 2.87
58 59 6.805760 CCTAGTCGGTTACTTACAAAGAGAAC 59.194 42.308 0.00 0.00 39.80 3.01
60 61 6.756221 AGTCGGTTACTTACAAAGAGAACAT 58.244 36.000 0.00 0.00 33.35 2.71
61 62 6.645415 AGTCGGTTACTTACAAAGAGAACATG 59.355 38.462 0.00 0.00 33.35 3.21
62 63 6.423001 GTCGGTTACTTACAAAGAGAACATGT 59.577 38.462 0.00 0.00 32.94 3.21
63 64 6.987992 TCGGTTACTTACAAAGAGAACATGTT 59.012 34.615 11.78 11.78 32.94 2.71
64 65 7.170320 TCGGTTACTTACAAAGAGAACATGTTC 59.830 37.037 27.69 27.69 39.78 3.18
82 83 3.068873 TGTTCTAAAACAACACCCCATGC 59.931 43.478 0.00 0.00 42.34 4.06
83 84 3.237268 TCTAAAACAACACCCCATGCT 57.763 42.857 0.00 0.00 0.00 3.79
84 85 3.571590 TCTAAAACAACACCCCATGCTT 58.428 40.909 0.00 0.00 0.00 3.91
85 86 4.730966 TCTAAAACAACACCCCATGCTTA 58.269 39.130 0.00 0.00 0.00 3.09
86 87 4.764823 TCTAAAACAACACCCCATGCTTAG 59.235 41.667 0.00 0.00 0.00 2.18
87 88 1.923356 AACAACACCCCATGCTTAGG 58.077 50.000 0.00 0.00 0.00 2.69
88 89 0.777446 ACAACACCCCATGCTTAGGT 59.223 50.000 0.00 0.00 0.00 3.08
90 91 2.377193 ACAACACCCCATGCTTAGGTTA 59.623 45.455 0.00 0.00 0.00 2.85
91 92 3.016736 CAACACCCCATGCTTAGGTTAG 58.983 50.000 0.00 0.00 0.00 2.34
92 93 2.275466 ACACCCCATGCTTAGGTTAGT 58.725 47.619 0.00 0.00 0.00 2.24
93 94 2.647802 ACACCCCATGCTTAGGTTAGTT 59.352 45.455 0.00 0.00 0.00 2.24
94 95 3.847780 ACACCCCATGCTTAGGTTAGTTA 59.152 43.478 0.00 0.00 0.00 2.24
96 97 5.044402 ACACCCCATGCTTAGGTTAGTTAAT 60.044 40.000 0.00 0.00 0.00 1.40
97 98 5.891551 CACCCCATGCTTAGGTTAGTTAATT 59.108 40.000 0.00 0.00 0.00 1.40
99 100 7.724061 CACCCCATGCTTAGGTTAGTTAATTAT 59.276 37.037 0.00 0.00 0.00 1.28
100 101 8.286620 ACCCCATGCTTAGGTTAGTTAATTATT 58.713 33.333 0.00 0.00 0.00 1.40
101 102 9.802039 CCCCATGCTTAGGTTAGTTAATTATTA 57.198 33.333 0.00 0.00 0.00 0.98
130 131 7.792374 ATGTATTTGTATAGTCAGCAACTGG 57.208 36.000 2.27 0.00 39.11 4.00
131 132 5.584649 TGTATTTGTATAGTCAGCAACTGGC 59.415 40.000 2.27 0.00 39.11 4.85
145 146 4.380531 GCAACTGGCTATGCTATTAGTCA 58.619 43.478 3.12 0.00 39.46 3.41
146 147 4.999950 GCAACTGGCTATGCTATTAGTCAT 59.000 41.667 3.12 6.08 39.46 3.06
147 148 5.106791 GCAACTGGCTATGCTATTAGTCATG 60.107 44.000 9.49 0.00 39.46 3.07
148 149 4.573900 ACTGGCTATGCTATTAGTCATGC 58.426 43.478 9.49 10.00 33.58 4.06
149 150 4.285517 ACTGGCTATGCTATTAGTCATGCT 59.714 41.667 9.49 0.00 33.58 3.79
150 151 5.221803 ACTGGCTATGCTATTAGTCATGCTT 60.222 40.000 9.49 0.00 33.58 3.91
151 152 6.014242 ACTGGCTATGCTATTAGTCATGCTTA 60.014 38.462 9.49 0.00 33.58 3.09
153 154 5.814705 GGCTATGCTATTAGTCATGCTTAGG 59.185 44.000 0.00 0.00 35.26 2.69
155 156 6.876257 GCTATGCTATTAGTCATGCTTAGGTT 59.124 38.462 0.00 0.00 35.26 3.50
156 157 8.035394 GCTATGCTATTAGTCATGCTTAGGTTA 58.965 37.037 0.00 0.00 35.26 2.85
157 158 9.579768 CTATGCTATTAGTCATGCTTAGGTTAG 57.420 37.037 9.49 0.00 32.84 2.34
158 159 7.361457 TGCTATTAGTCATGCTTAGGTTAGT 57.639 36.000 0.00 0.00 0.00 2.24
159 160 7.792032 TGCTATTAGTCATGCTTAGGTTAGTT 58.208 34.615 0.00 0.00 0.00 2.24
160 161 8.920174 TGCTATTAGTCATGCTTAGGTTAGTTA 58.080 33.333 0.00 0.00 0.00 2.24
164 165 9.953565 ATTAGTCATGCTTAGGTTAGTTAACAA 57.046 29.630 8.61 0.00 37.92 2.83
165 166 9.781633 TTAGTCATGCTTAGGTTAGTTAACAAA 57.218 29.630 8.61 0.00 37.92 2.83
166 167 8.863872 AGTCATGCTTAGGTTAGTTAACAAAT 57.136 30.769 8.61 0.00 37.92 2.32
167 168 9.953565 AGTCATGCTTAGGTTAGTTAACAAATA 57.046 29.630 8.61 0.00 37.92 1.40
182 183 8.126700 AGTTAACAAATATTTATACTGCACCGC 58.873 33.333 8.61 0.00 0.00 5.68
184 185 4.884744 ACAAATATTTATACTGCACCGCCA 59.115 37.500 0.00 0.00 0.00 5.69
186 187 5.627499 AATATTTATACTGCACCGCCATG 57.373 39.130 0.00 0.00 0.00 3.66
188 189 3.545366 TTTATACTGCACCGCCATGTA 57.455 42.857 0.00 0.00 0.00 2.29
190 191 0.830648 ATACTGCACCGCCATGTACT 59.169 50.000 0.00 0.00 0.00 2.73
191 192 0.174845 TACTGCACCGCCATGTACTC 59.825 55.000 0.00 0.00 0.00 2.59
193 194 2.244117 CTGCACCGCCATGTACTCCT 62.244 60.000 0.00 0.00 0.00 3.69
194 195 1.078426 GCACCGCCATGTACTCCTT 60.078 57.895 0.00 0.00 0.00 3.36
196 197 0.744414 CACCGCCATGTACTCCTTGG 60.744 60.000 0.00 0.00 40.53 3.61
197 198 0.907704 ACCGCCATGTACTCCTTGGA 60.908 55.000 8.34 0.00 40.10 3.53
198 199 0.251916 CCGCCATGTACTCCTTGGAA 59.748 55.000 8.34 0.00 40.10 3.53
199 200 1.134098 CCGCCATGTACTCCTTGGAAT 60.134 52.381 8.34 0.00 40.10 3.01
201 202 3.433031 CCGCCATGTACTCCTTGGAATTA 60.433 47.826 8.34 0.00 40.10 1.40
202 203 4.196193 CGCCATGTACTCCTTGGAATTAA 58.804 43.478 8.34 0.00 40.10 1.40
206 207 5.829924 CCATGTACTCCTTGGAATTAAGCAT 59.170 40.000 0.00 0.00 40.10 3.79
207 208 6.238842 CCATGTACTCCTTGGAATTAAGCATG 60.239 42.308 0.00 0.00 40.10 4.06
208 209 4.640201 TGTACTCCTTGGAATTAAGCATGC 59.360 41.667 10.51 10.51 0.00 4.06
209 210 3.700538 ACTCCTTGGAATTAAGCATGCA 58.299 40.909 21.98 0.00 0.00 3.96
210 211 4.284178 ACTCCTTGGAATTAAGCATGCAT 58.716 39.130 21.98 11.22 0.00 3.96
211 212 4.340381 ACTCCTTGGAATTAAGCATGCATC 59.660 41.667 21.98 9.43 0.00 3.91
212 213 3.638160 TCCTTGGAATTAAGCATGCATCC 59.362 43.478 21.98 17.87 0.00 3.51
213 214 3.385433 CCTTGGAATTAAGCATGCATCCA 59.615 43.478 21.98 20.07 35.27 3.41
224 225 5.494390 AGCATGCATCCATGATTACTAGA 57.506 39.130 21.98 0.00 45.15 2.43
225 226 5.872963 AGCATGCATCCATGATTACTAGAA 58.127 37.500 21.98 0.00 45.15 2.10
228 229 7.908153 AGCATGCATCCATGATTACTAGAAGTT 60.908 37.037 21.98 0.00 45.15 2.66
232 233 9.494271 TGCATCCATGATTACTAGAAGTTAATC 57.506 33.333 0.00 0.28 0.00 1.75
233 234 9.717942 GCATCCATGATTACTAGAAGTTAATCT 57.282 33.333 0.00 0.00 32.01 2.40
236 237 9.661954 TCCATGATTACTAGAAGTTAATCTCCT 57.338 33.333 0.00 0.00 32.01 3.69
247 248 8.673456 AGAAGTTAATCTCCTTCTTAAGAGGT 57.327 34.615 13.05 0.00 43.69 3.85
248 249 9.106977 AGAAGTTAATCTCCTTCTTAAGAGGTT 57.893 33.333 13.05 3.92 43.69 3.50
249 250 9.157104 GAAGTTAATCTCCTTCTTAAGAGGTTG 57.843 37.037 13.05 5.94 35.33 3.77
250 251 8.208575 AGTTAATCTCCTTCTTAAGAGGTTGT 57.791 34.615 13.05 4.91 0.00 3.32
251 252 8.315482 AGTTAATCTCCTTCTTAAGAGGTTGTC 58.685 37.037 13.05 0.63 0.00 3.18
252 253 6.943899 AATCTCCTTCTTAAGAGGTTGTCT 57.056 37.500 13.05 0.00 36.94 3.41
254 255 6.749036 TCTCCTTCTTAAGAGGTTGTCTTT 57.251 37.500 13.05 0.00 43.54 2.52
255 256 6.760291 TCTCCTTCTTAAGAGGTTGTCTTTC 58.240 40.000 13.05 0.00 43.54 2.62
256 257 5.866207 TCCTTCTTAAGAGGTTGTCTTTCC 58.134 41.667 13.05 0.00 43.54 3.13
257 258 5.607171 TCCTTCTTAAGAGGTTGTCTTTCCT 59.393 40.000 13.05 0.00 43.54 3.36
258 259 6.785963 TCCTTCTTAAGAGGTTGTCTTTCCTA 59.214 38.462 13.05 0.00 43.54 2.94
259 260 6.874664 CCTTCTTAAGAGGTTGTCTTTCCTAC 59.125 42.308 13.05 0.00 43.54 3.18
262 263 7.011382 TCTTAAGAGGTTGTCTTTCCTACTCT 58.989 38.462 0.00 0.00 43.54 3.24
265 266 7.613551 AAGAGGTTGTCTTTCCTACTCTTTA 57.386 36.000 0.00 0.00 43.54 1.85
267 268 7.672240 AGAGGTTGTCTTTCCTACTCTTTAAG 58.328 38.462 0.00 0.00 33.83 1.85
269 270 8.030913 AGGTTGTCTTTCCTACTCTTTAAGAA 57.969 34.615 0.00 0.00 31.66 2.52
271 272 9.117183 GGTTGTCTTTCCTACTCTTTAAGAAAA 57.883 33.333 0.00 0.00 0.00 2.29
273 274 9.901172 TTGTCTTTCCTACTCTTTAAGAAAAGT 57.099 29.630 12.78 4.07 42.36 2.66
274 275 9.543783 TGTCTTTCCTACTCTTTAAGAAAAGTC 57.456 33.333 12.78 9.56 42.36 3.01
275 276 9.767228 GTCTTTCCTACTCTTTAAGAAAAGTCT 57.233 33.333 12.78 0.00 42.36 3.24
276 277 9.984190 TCTTTCCTACTCTTTAAGAAAAGTCTC 57.016 33.333 12.78 0.00 42.36 3.36
277 278 9.210329 CTTTCCTACTCTTTAAGAAAAGTCTCC 57.790 37.037 7.53 0.00 42.36 3.71
278 279 8.493787 TTCCTACTCTTTAAGAAAAGTCTCCT 57.506 34.615 0.00 0.00 42.36 3.69
280 281 8.586744 TCCTACTCTTTAAGAAAAGTCTCCTTC 58.413 37.037 0.00 0.00 42.36 3.46
281 282 7.820386 CCTACTCTTTAAGAAAAGTCTCCTTCC 59.180 40.741 0.00 0.00 42.36 3.46
282 283 7.381789 ACTCTTTAAGAAAAGTCTCCTTCCT 57.618 36.000 0.00 0.00 42.36 3.36
283 284 7.446769 ACTCTTTAAGAAAAGTCTCCTTCCTC 58.553 38.462 0.00 0.00 42.36 3.71
284 285 6.770542 TCTTTAAGAAAAGTCTCCTTCCTCC 58.229 40.000 0.00 0.00 42.36 4.30
285 286 6.559157 TCTTTAAGAAAAGTCTCCTTCCTCCT 59.441 38.462 0.00 0.00 42.36 3.69
287 288 5.654901 AAGAAAAGTCTCCTTCCTCCTTT 57.345 39.130 0.00 0.00 30.70 3.11
288 289 5.235850 AGAAAAGTCTCCTTCCTCCTTTC 57.764 43.478 0.00 0.00 0.00 2.62
289 290 3.686916 AAAGTCTCCTTCCTCCTTTCG 57.313 47.619 0.00 0.00 0.00 3.46
291 292 2.172679 AGTCTCCTTCCTCCTTTCGTC 58.827 52.381 0.00 0.00 0.00 4.20
292 293 1.135344 GTCTCCTTCCTCCTTTCGTCG 60.135 57.143 0.00 0.00 0.00 5.12
294 295 1.448013 CCTTCCTCCTTTCGTCGGC 60.448 63.158 0.00 0.00 0.00 5.54
295 296 1.805945 CTTCCTCCTTTCGTCGGCG 60.806 63.158 1.15 1.15 39.92 6.46
296 297 3.927163 TTCCTCCTTTCGTCGGCGC 62.927 63.158 3.52 0.00 38.14 6.53
319 320 2.765807 CTGATCCGCCCCACCTCT 60.766 66.667 0.00 0.00 0.00 3.69
321 322 2.764128 GATCCGCCCCACCTCTGA 60.764 66.667 0.00 0.00 0.00 3.27
322 323 2.040464 ATCCGCCCCACCTCTGAT 60.040 61.111 0.00 0.00 0.00 2.90
323 324 2.388890 GATCCGCCCCACCTCTGATG 62.389 65.000 0.00 0.00 0.00 3.07
324 325 4.181010 CCGCCCCACCTCTGATGG 62.181 72.222 0.00 0.00 36.94 3.51
325 326 4.864334 CGCCCCACCTCTGATGGC 62.864 72.222 0.00 0.00 35.74 4.40
326 327 4.512914 GCCCCACCTCTGATGGCC 62.513 72.222 0.00 0.00 35.74 5.36
327 328 2.693864 CCCCACCTCTGATGGCCT 60.694 66.667 3.32 0.00 35.74 5.19
328 329 2.311854 CCCCACCTCTGATGGCCTT 61.312 63.158 3.32 0.00 35.74 4.35
329 330 1.693640 CCCACCTCTGATGGCCTTT 59.306 57.895 3.32 0.00 35.74 3.11
330 331 0.682209 CCCACCTCTGATGGCCTTTG 60.682 60.000 3.32 0.00 35.74 2.77
331 332 0.682209 CCACCTCTGATGGCCTTTGG 60.682 60.000 3.32 0.00 0.00 3.28
332 333 0.682209 CACCTCTGATGGCCTTTGGG 60.682 60.000 3.32 1.23 0.00 4.12
333 334 1.142688 ACCTCTGATGGCCTTTGGGT 61.143 55.000 3.32 1.92 34.45 4.51
334 335 0.394899 CCTCTGATGGCCTTTGGGTC 60.395 60.000 3.32 0.00 37.81 4.46
335 336 0.745845 CTCTGATGGCCTTTGGGTCG 60.746 60.000 3.32 0.00 40.80 4.79
336 337 1.002134 CTGATGGCCTTTGGGTCGT 60.002 57.895 3.32 0.00 40.80 4.34
337 338 1.303236 TGATGGCCTTTGGGTCGTG 60.303 57.895 3.32 0.00 40.80 4.35
338 339 2.035626 ATGGCCTTTGGGTCGTGG 59.964 61.111 3.32 0.00 40.80 4.94
339 340 2.478335 GATGGCCTTTGGGTCGTGGA 62.478 60.000 3.32 0.00 40.80 4.02
340 341 2.359975 GGCCTTTGGGTCGTGGAG 60.360 66.667 0.00 0.00 34.45 3.86
341 342 2.747686 GCCTTTGGGTCGTGGAGA 59.252 61.111 0.00 0.00 34.45 3.71
350 351 4.063967 TCGTGGAGACGGCGCAAT 62.064 61.111 10.83 0.00 46.11 3.56
353 354 1.355796 CGTGGAGACGGCGCAATTTA 61.356 55.000 10.83 0.00 42.18 1.40
356 357 1.198178 TGGAGACGGCGCAATTTAAAC 59.802 47.619 10.83 0.00 0.00 2.01
357 358 1.466866 GGAGACGGCGCAATTTAAACC 60.467 52.381 10.83 0.00 0.00 3.27
358 359 1.198178 GAGACGGCGCAATTTAAACCA 59.802 47.619 10.83 0.00 0.00 3.67
359 360 1.609555 AGACGGCGCAATTTAAACCAA 59.390 42.857 10.83 0.00 0.00 3.67
361 362 2.128821 ACGGCGCAATTTAAACCAAAC 58.871 42.857 10.83 0.00 0.00 2.93
362 363 2.223852 ACGGCGCAATTTAAACCAAACT 60.224 40.909 10.83 0.00 0.00 2.66
363 364 2.797719 CGGCGCAATTTAAACCAAACTT 59.202 40.909 10.83 0.00 0.00 2.66
366 367 4.084589 GGCGCAATTTAAACCAAACTTCTG 60.085 41.667 10.83 0.00 0.00 3.02
367 368 4.608222 GCGCAATTTAAACCAAACTTCTGC 60.608 41.667 0.30 0.00 0.00 4.26
368 369 4.374906 CGCAATTTAAACCAAACTTCTGCG 60.375 41.667 0.00 0.00 37.65 5.18
369 370 4.742659 GCAATTTAAACCAAACTTCTGCGA 59.257 37.500 0.00 0.00 0.00 5.10
370 371 5.107875 GCAATTTAAACCAAACTTCTGCGAG 60.108 40.000 0.00 0.00 0.00 5.03
371 372 5.767816 ATTTAAACCAAACTTCTGCGAGT 57.232 34.783 0.00 0.00 0.00 4.18
372 373 5.570234 TTTAAACCAAACTTCTGCGAGTT 57.430 34.783 0.00 0.00 41.44 3.01
373 374 3.692791 AAACCAAACTTCTGCGAGTTC 57.307 42.857 0.00 0.00 38.86 3.01
374 375 1.217882 ACCAAACTTCTGCGAGTTCG 58.782 50.000 0.00 0.00 38.86 3.95
377 378 2.348591 CCAAACTTCTGCGAGTTCGTTC 60.349 50.000 3.27 0.00 38.86 3.95
378 379 2.218953 AACTTCTGCGAGTTCGTTCA 57.781 45.000 3.27 0.00 42.22 3.18
379 380 2.440539 ACTTCTGCGAGTTCGTTCAT 57.559 45.000 3.27 0.00 42.22 2.57
381 382 4.111375 ACTTCTGCGAGTTCGTTCATAT 57.889 40.909 3.27 0.00 42.22 1.78
382 383 4.495422 ACTTCTGCGAGTTCGTTCATATT 58.505 39.130 3.27 0.00 42.22 1.28
383 384 4.929808 ACTTCTGCGAGTTCGTTCATATTT 59.070 37.500 3.27 0.00 42.22 1.40
385 386 6.588756 ACTTCTGCGAGTTCGTTCATATTTAA 59.411 34.615 3.27 0.00 42.22 1.52
388 389 7.970384 TCTGCGAGTTCGTTCATATTTAAAAT 58.030 30.769 3.27 0.00 42.22 1.82
389 390 9.089601 TCTGCGAGTTCGTTCATATTTAAAATA 57.910 29.630 3.27 0.00 42.22 1.40
419 420 2.943449 AAACCGCTACTACTCTGCTC 57.057 50.000 0.00 0.00 0.00 4.26
420 421 1.104630 AACCGCTACTACTCTGCTCC 58.895 55.000 0.00 0.00 0.00 4.70
421 422 0.256464 ACCGCTACTACTCTGCTCCT 59.744 55.000 0.00 0.00 0.00 3.69
422 423 0.948678 CCGCTACTACTCTGCTCCTC 59.051 60.000 0.00 0.00 0.00 3.71
425 426 0.948678 CTACTACTCTGCTCCTCGCC 59.051 60.000 0.00 0.00 38.05 5.54
426 427 0.814410 TACTACTCTGCTCCTCGCCG 60.814 60.000 0.00 0.00 38.05 6.46
427 428 2.045242 TACTCTGCTCCTCGCCGT 60.045 61.111 0.00 0.00 38.05 5.68
428 429 2.054140 CTACTCTGCTCCTCGCCGTC 62.054 65.000 0.00 0.00 38.05 4.79
429 430 2.538512 TACTCTGCTCCTCGCCGTCT 62.539 60.000 0.00 0.00 38.05 4.18
430 431 3.119709 CTCTGCTCCTCGCCGTCTC 62.120 68.421 0.00 0.00 38.05 3.36
431 432 4.200283 CTGCTCCTCGCCGTCTCC 62.200 72.222 0.00 0.00 38.05 3.71
469 470 2.046314 GCCGCCCTTGCAGTTCTA 60.046 61.111 0.00 0.00 37.32 2.10
473 474 0.729116 CGCCCTTGCAGTTCTACATG 59.271 55.000 0.00 0.00 37.32 3.21
474 475 0.453390 GCCCTTGCAGTTCTACATGC 59.547 55.000 0.00 0.00 42.86 4.06
475 476 1.098050 CCCTTGCAGTTCTACATGCC 58.902 55.000 0.00 0.00 41.85 4.40
476 477 0.729116 CCTTGCAGTTCTACATGCCG 59.271 55.000 0.00 0.00 41.85 5.69
478 479 1.662629 CTTGCAGTTCTACATGCCGAG 59.337 52.381 0.00 0.00 41.85 4.63
479 480 0.108186 TGCAGTTCTACATGCCGAGG 60.108 55.000 0.00 0.00 41.85 4.63
480 481 0.175760 GCAGTTCTACATGCCGAGGA 59.824 55.000 0.00 0.00 36.41 3.71
482 483 2.544685 CAGTTCTACATGCCGAGGAAG 58.455 52.381 0.00 0.00 0.00 3.46
484 485 1.134670 GTTCTACATGCCGAGGAAGCT 60.135 52.381 0.00 0.00 0.00 3.74
485 486 0.461548 TCTACATGCCGAGGAAGCTG 59.538 55.000 0.00 0.00 0.00 4.24
486 487 0.176680 CTACATGCCGAGGAAGCTGT 59.823 55.000 0.00 0.00 0.00 4.40
487 488 1.409064 CTACATGCCGAGGAAGCTGTA 59.591 52.381 0.00 0.00 0.00 2.74
491 492 0.246635 TGCCGAGGAAGCTGTAGAAC 59.753 55.000 0.00 0.00 0.00 3.01
492 493 0.460459 GCCGAGGAAGCTGTAGAACC 60.460 60.000 0.00 0.00 0.00 3.62
494 495 0.802607 CGAGGAAGCTGTAGAACCGC 60.803 60.000 0.00 0.00 0.00 5.68
496 497 1.080025 GGAAGCTGTAGAACCGCGT 60.080 57.895 4.92 0.00 33.37 6.01
497 498 1.352156 GGAAGCTGTAGAACCGCGTG 61.352 60.000 4.92 0.00 33.37 5.34
501 502 0.109412 GCTGTAGAACCGCGTGTAGT 60.109 55.000 4.92 0.00 0.00 2.73
502 503 1.892468 CTGTAGAACCGCGTGTAGTC 58.108 55.000 4.92 0.00 0.00 2.59
562 563 4.792804 GTCCCTGCTGCAGCCCTC 62.793 72.222 34.64 16.77 41.18 4.30
613 614 4.808238 GGCGTCCTCGTCGTCGTC 62.808 72.222 1.33 0.00 39.49 4.20
615 616 3.771491 CGTCCTCGTCGTCGTCGT 61.771 66.667 11.41 0.00 38.33 4.34
616 617 2.553268 GTCCTCGTCGTCGTCGTT 59.447 61.111 11.41 0.00 38.33 3.85
617 618 1.791283 GTCCTCGTCGTCGTCGTTG 60.791 63.158 11.41 6.30 38.33 4.10
620 621 2.128017 TCGTCGTCGTCGTTGTCG 60.128 61.111 11.41 4.14 38.33 4.35
621 622 2.128017 CGTCGTCGTCGTTGTCGA 60.128 61.111 3.67 0.00 44.12 4.20
622 623 2.130219 CGTCGTCGTCGTTGTCGAG 61.130 63.158 3.67 0.00 46.96 4.04
628 629 3.164011 GTCGTTGTCGAGGACGCG 61.164 66.667 3.53 3.53 46.96 6.01
646 647 2.050351 CGTCGTCACGCCTTCACT 60.050 61.111 0.00 0.00 39.69 3.41
647 648 2.365068 CGTCGTCACGCCTTCACTG 61.365 63.158 0.00 0.00 39.69 3.66
648 649 2.355837 TCGTCACGCCTTCACTGC 60.356 61.111 0.00 0.00 0.00 4.40
713 714 2.812178 GCGGCAGCTTTGGCATTG 60.812 61.111 0.00 0.00 41.70 2.82
715 716 1.514087 CGGCAGCTTTGGCATTGAT 59.486 52.632 0.46 0.00 41.70 2.57
717 718 1.648504 GGCAGCTTTGGCATTGATTC 58.351 50.000 0.00 0.00 41.70 2.52
718 719 1.274596 GCAGCTTTGGCATTGATTCG 58.725 50.000 0.00 0.00 41.70 3.34
719 720 1.274596 CAGCTTTGGCATTGATTCGC 58.725 50.000 0.00 0.00 41.70 4.70
724 725 4.612536 GGCATTGATTCGCCGCGG 62.613 66.667 24.05 24.05 38.82 6.46
725 726 4.612536 GCATTGATTCGCCGCGGG 62.613 66.667 29.38 17.41 0.00 6.13
726 727 2.894879 CATTGATTCGCCGCGGGA 60.895 61.111 29.38 19.62 0.00 5.14
727 728 2.124901 ATTGATTCGCCGCGGGAA 60.125 55.556 29.38 26.61 38.75 3.97
729 730 1.988834 ATTGATTCGCCGCGGGAAAC 61.989 55.000 29.38 24.36 37.97 2.78
730 731 3.122323 GATTCGCCGCGGGAAACA 61.122 61.111 29.38 8.07 37.97 2.83
732 733 2.577763 GATTCGCCGCGGGAAACAAG 62.578 60.000 29.38 0.00 37.97 3.16
738 739 2.485122 GCGGGAAACAAGGCGATG 59.515 61.111 0.00 0.00 0.00 3.84
739 740 2.038269 GCGGGAAACAAGGCGATGA 61.038 57.895 0.26 0.00 0.00 2.92
740 741 1.982073 GCGGGAAACAAGGCGATGAG 61.982 60.000 0.26 0.00 0.00 2.90
741 742 1.369091 CGGGAAACAAGGCGATGAGG 61.369 60.000 0.26 0.00 0.00 3.86
742 743 0.035439 GGGAAACAAGGCGATGAGGA 60.035 55.000 0.26 0.00 0.00 3.71
743 744 1.087501 GGAAACAAGGCGATGAGGAC 58.912 55.000 0.26 0.00 0.00 3.85
746 747 0.389948 AACAAGGCGATGAGGACGAC 60.390 55.000 0.00 0.00 39.24 4.34
747 748 1.874019 CAAGGCGATGAGGACGACG 60.874 63.158 0.00 0.00 44.04 5.12
750 751 1.586564 GGCGATGAGGACGACGAAG 60.587 63.158 0.00 0.00 0.00 3.79
751 752 2.224885 GCGATGAGGACGACGAAGC 61.225 63.158 0.00 0.00 0.00 3.86
752 753 1.934956 CGATGAGGACGACGAAGCG 60.935 63.158 0.00 0.00 37.29 4.68
753 754 1.586564 GATGAGGACGACGAAGCGG 60.587 63.158 0.00 0.00 35.12 5.52
754 755 3.701604 ATGAGGACGACGAAGCGGC 62.702 63.158 0.00 0.00 38.96 6.53
770 771 2.481464 GCGAGAAGCGAGACGAGT 59.519 61.111 0.00 0.00 44.57 4.18
771 772 1.581657 GCGAGAAGCGAGACGAGTC 60.582 63.158 0.00 0.00 44.57 3.36
772 773 1.296288 CGAGAAGCGAGACGAGTCG 60.296 63.158 11.85 11.85 44.57 4.18
778 779 4.103103 CGAGACGAGTCGCTGGCA 62.103 66.667 13.59 0.00 32.22 4.92
779 780 2.258591 GAGACGAGTCGCTGGCAA 59.741 61.111 13.59 0.00 34.09 4.52
780 781 1.803519 GAGACGAGTCGCTGGCAAG 60.804 63.158 13.59 0.00 34.09 4.01
783 784 2.507992 CGAGTCGCTGGCAAGGAG 60.508 66.667 0.00 0.00 0.00 3.69
784 785 2.125350 GAGTCGCTGGCAAGGAGG 60.125 66.667 0.00 0.00 0.00 4.30
785 786 3.672295 GAGTCGCTGGCAAGGAGGG 62.672 68.421 0.00 0.00 0.00 4.30
807 808 3.722295 CGGCTCTTTCGCGCCAAA 61.722 61.111 0.00 0.00 46.62 3.28
808 809 2.642700 GGCTCTTTCGCGCCAAAA 59.357 55.556 0.00 1.69 45.59 2.44
809 810 1.007849 GGCTCTTTCGCGCCAAAAA 60.008 52.632 0.00 0.00 45.59 1.94
812 813 1.833860 CTCTTTCGCGCCAAAAACAA 58.166 45.000 0.00 0.00 0.00 2.83
813 814 2.393764 CTCTTTCGCGCCAAAAACAAT 58.606 42.857 0.00 0.00 0.00 2.71
814 815 2.794350 CTCTTTCGCGCCAAAAACAATT 59.206 40.909 0.00 0.00 0.00 2.32
816 817 1.124462 TTCGCGCCAAAAACAATTCG 58.876 45.000 0.00 0.00 0.00 3.34
819 820 1.896339 GCGCCAAAAACAATTCGCCC 61.896 55.000 0.00 0.00 37.02 6.13
820 821 1.613347 CGCCAAAAACAATTCGCCCG 61.613 55.000 0.00 0.00 0.00 6.13
821 822 1.288419 GCCAAAAACAATTCGCCCGG 61.288 55.000 0.00 0.00 0.00 5.73
876 877 3.370231 GTCCGCCGGCACCAATTT 61.370 61.111 28.98 0.00 0.00 1.82
877 878 3.059386 TCCGCCGGCACCAATTTC 61.059 61.111 28.98 0.00 0.00 2.17
878 879 4.474846 CCGCCGGCACCAATTTCG 62.475 66.667 28.98 6.19 0.00 3.46
879 880 4.474846 CGCCGGCACCAATTTCGG 62.475 66.667 28.98 0.98 44.70 4.30
881 882 4.128388 CCGGCACCAATTTCGGCC 62.128 66.667 0.00 0.00 42.98 6.13
883 884 4.128388 GGCACCAATTTCGGCCCG 62.128 66.667 0.00 0.00 40.55 6.13
884 885 3.059386 GCACCAATTTCGGCCCGA 61.059 61.111 0.00 0.00 0.00 5.14
885 886 3.051392 GCACCAATTTCGGCCCGAG 62.051 63.158 5.73 0.00 37.14 4.63
897 898 3.131478 CCCGAGCCGGCGAAAATT 61.131 61.111 23.20 0.68 46.86 1.82
898 899 2.100216 CCGAGCCGGCGAAAATTG 59.900 61.111 23.20 6.86 41.17 2.32
899 900 2.100216 CGAGCCGGCGAAAATTGG 59.900 61.111 23.20 0.00 0.00 3.16
900 901 2.489751 GAGCCGGCGAAAATTGGG 59.510 61.111 23.20 0.00 0.00 4.12
901 902 3.699955 GAGCCGGCGAAAATTGGGC 62.700 63.158 23.20 0.00 44.07 5.36
902 903 4.812476 GCCGGCGAAAATTGGGCC 62.812 66.667 12.58 0.00 43.42 5.80
903 904 4.141965 CCGGCGAAAATTGGGCCC 62.142 66.667 17.59 17.59 43.99 5.80
904 905 3.068064 CGGCGAAAATTGGGCCCT 61.068 61.111 25.70 0.15 43.99 5.19
905 906 2.645192 CGGCGAAAATTGGGCCCTT 61.645 57.895 25.70 8.87 43.99 3.95
906 907 1.079197 GGCGAAAATTGGGCCCTTG 60.079 57.895 25.70 7.14 41.01 3.61
907 908 1.079197 GCGAAAATTGGGCCCTTGG 60.079 57.895 25.70 11.33 0.00 3.61
908 909 1.596408 CGAAAATTGGGCCCTTGGG 59.404 57.895 25.70 0.32 0.00 4.12
919 920 4.760047 CCTTGGGGACGCGACTGG 62.760 72.222 15.93 0.57 33.58 4.00
920 921 3.691342 CTTGGGGACGCGACTGGA 61.691 66.667 15.93 0.00 0.00 3.86
921 922 3.934391 CTTGGGGACGCGACTGGAC 62.934 68.421 15.93 0.00 0.00 4.02
925 926 3.823330 GGACGCGACTGGACCGAT 61.823 66.667 15.93 0.00 0.00 4.18
926 927 2.181021 GACGCGACTGGACCGATT 59.819 61.111 15.93 0.00 0.00 3.34
927 928 1.445582 GACGCGACTGGACCGATTT 60.446 57.895 15.93 0.00 0.00 2.17
928 929 1.005394 ACGCGACTGGACCGATTTT 60.005 52.632 15.93 0.00 0.00 1.82
929 930 0.601841 ACGCGACTGGACCGATTTTT 60.602 50.000 15.93 0.00 0.00 1.94
951 952 4.103103 GCCGGCGGCTGAAAAGTC 62.103 66.667 41.44 11.38 46.69 3.01
952 953 3.788766 CCGGCGGCTGAAAAGTCG 61.789 66.667 15.42 0.00 40.23 4.18
956 957 2.863153 CGGCTGAAAAGTCGCCTG 59.137 61.111 0.00 0.00 39.69 4.85
957 958 2.680913 CGGCTGAAAAGTCGCCTGG 61.681 63.158 0.00 0.00 39.69 4.45
958 959 2.335712 GGCTGAAAAGTCGCCTGGG 61.336 63.158 0.00 0.00 39.14 4.45
959 960 2.335712 GCTGAAAAGTCGCCTGGGG 61.336 63.158 4.03 4.03 0.00 4.96
960 961 1.675641 CTGAAAAGTCGCCTGGGGG 60.676 63.158 11.17 0.78 0.00 5.40
974 975 3.737122 GGGGGTCTAGTTGGGGAC 58.263 66.667 0.00 0.00 0.00 4.46
975 976 2.364780 GGGGGTCTAGTTGGGGACG 61.365 68.421 0.00 0.00 33.70 4.79
976 977 2.582978 GGGTCTAGTTGGGGACGC 59.417 66.667 0.00 0.00 38.01 5.19
977 978 2.288025 GGGTCTAGTTGGGGACGCA 61.288 63.158 0.00 0.00 42.41 5.24
978 979 1.218316 GGTCTAGTTGGGGACGCAG 59.782 63.158 0.00 0.00 33.70 5.18
979 980 1.448013 GTCTAGTTGGGGACGCAGC 60.448 63.158 0.00 0.00 0.00 5.25
980 981 1.609501 TCTAGTTGGGGACGCAGCT 60.610 57.895 10.27 10.27 0.00 4.24
981 982 1.448540 CTAGTTGGGGACGCAGCTG 60.449 63.158 10.11 10.11 0.00 4.24
982 983 2.859273 CTAGTTGGGGACGCAGCTGG 62.859 65.000 17.12 8.27 0.00 4.85
983 984 4.329545 GTTGGGGACGCAGCTGGA 62.330 66.667 17.12 0.00 0.00 3.86
984 985 4.020617 TTGGGGACGCAGCTGGAG 62.021 66.667 17.12 0.36 0.00 3.86
986 987 3.474570 GGGGACGCAGCTGGAGAT 61.475 66.667 17.12 0.00 0.00 2.75
987 988 2.202987 GGGACGCAGCTGGAGATG 60.203 66.667 17.12 0.00 34.00 2.90
995 996 1.868469 CAGCTGGAGATGCTCTTAGC 58.132 55.000 5.57 12.79 42.82 3.09
1014 1015 7.527796 TCTTAGCACTAGTATAACTGGGATCT 58.472 38.462 0.00 0.00 30.19 2.75
1016 1017 6.658188 AGCACTAGTATAACTGGGATCTTC 57.342 41.667 0.00 0.00 30.19 2.87
1049 1050 1.206578 GCAACCACGTTCCGACATG 59.793 57.895 0.00 0.00 0.00 3.21
1051 1052 0.941542 CAACCACGTTCCGACATGTT 59.058 50.000 0.00 0.00 0.00 2.71
1980 5853 0.171231 TTCGTCATGGAGAGCGTCAG 59.829 55.000 0.00 0.00 0.00 3.51
2173 6067 1.517242 GCATCCATCCTCCGAATGAC 58.483 55.000 0.00 0.00 0.00 3.06
2244 6142 4.741321 TTTTTGCTGAATCCATCCATCC 57.259 40.909 0.00 0.00 0.00 3.51
2248 6146 2.224942 TGCTGAATCCATCCATCCATCC 60.225 50.000 0.00 0.00 0.00 3.51
2250 6148 3.752868 GCTGAATCCATCCATCCATCCAA 60.753 47.826 0.00 0.00 0.00 3.53
2251 6149 4.673968 CTGAATCCATCCATCCATCCAAT 58.326 43.478 0.00 0.00 0.00 3.16
2252 6150 5.082633 TGAATCCATCCATCCATCCAATT 57.917 39.130 0.00 0.00 0.00 2.32
2253 6151 5.081728 TGAATCCATCCATCCATCCAATTC 58.918 41.667 0.00 0.00 0.00 2.17
2254 6152 4.752621 ATCCATCCATCCATCCAATTCA 57.247 40.909 0.00 0.00 0.00 2.57
2255 6153 3.836146 TCCATCCATCCATCCAATTCAC 58.164 45.455 0.00 0.00 0.00 3.18
2256 6154 3.464456 TCCATCCATCCATCCAATTCACT 59.536 43.478 0.00 0.00 0.00 3.41
2257 6155 3.572682 CCATCCATCCATCCAATTCACTG 59.427 47.826 0.00 0.00 0.00 3.66
2423 9546 7.088272 TGCATATTACGGTACTACTAGCATTG 58.912 38.462 0.00 0.00 0.00 2.82
2440 9565 5.243981 AGCATTGCATCCTCATACATACTC 58.756 41.667 11.91 0.00 0.00 2.59
2464 9603 3.805422 TCGTGCACGATCCATTAATTACC 59.195 43.478 36.40 0.00 44.22 2.85
2465 9604 3.807622 CGTGCACGATCCATTAATTACCT 59.192 43.478 34.93 0.00 43.02 3.08
2466 9605 4.318760 CGTGCACGATCCATTAATTACCTG 60.319 45.833 34.93 0.00 43.02 4.00
2467 9606 3.563808 TGCACGATCCATTAATTACCTGC 59.436 43.478 0.00 0.00 0.00 4.85
2468 9607 3.058224 GCACGATCCATTAATTACCTGCC 60.058 47.826 0.00 0.00 0.00 4.85
2470 9609 3.070446 ACGATCCATTAATTACCTGCCGA 59.930 43.478 0.00 0.00 0.00 5.54
2489 9628 4.342772 CCGATGAAATGTTCACGAAATCC 58.657 43.478 11.75 0.00 43.48 3.01
2493 9632 5.309323 TGAAATGTTCACGAAATCCCATC 57.691 39.130 0.00 0.00 34.08 3.51
2496 9635 5.920193 AATGTTCACGAAATCCCATCATT 57.080 34.783 0.00 0.00 0.00 2.57
2497 9636 5.920193 ATGTTCACGAAATCCCATCATTT 57.080 34.783 0.00 0.00 0.00 2.32
2498 9637 5.058149 TGTTCACGAAATCCCATCATTTG 57.942 39.130 0.00 0.00 0.00 2.32
2530 9669 2.907910 AAATGTGATCAACTCGCTGC 57.092 45.000 0.00 0.00 35.31 5.25
2602 9744 1.375908 GCGGCTCAAGGTGATCACA 60.376 57.895 26.47 5.82 0.00 3.58
2765 10093 2.926778 AGACAATATGCAGCCTCCTC 57.073 50.000 0.00 0.00 0.00 3.71
2771 10099 4.713321 ACAATATGCAGCCTCCTCAAAATT 59.287 37.500 0.00 0.00 0.00 1.82
2775 10103 4.789012 TGCAGCCTCCTCAAAATTAAAG 57.211 40.909 0.00 0.00 0.00 1.85
2786 10114 3.970640 TCAAAATTAAAGGTGGGCCAGTT 59.029 39.130 6.40 4.14 37.19 3.16
2848 10176 3.875134 GAGGTGAAACTTGGACTTTTCGA 59.125 43.478 0.00 0.00 34.93 3.71
2924 10254 3.100671 AGGGGTTAGTGTTGTTTTGCAA 58.899 40.909 0.00 0.00 34.16 4.08
2961 10291 4.022935 ACACATGATCGATGCACAGTTTTT 60.023 37.500 0.54 0.00 35.15 1.94
3010 10359 9.049523 TCTGAAGATTGTGCTAACATGATTATC 57.950 33.333 0.00 0.00 35.83 1.75
3121 10471 7.710907 TCCTGTAATCCTGATTTCTCATTAACG 59.289 37.037 0.00 0.00 32.50 3.18
3124 10474 9.443323 TGTAATCCTGATTTCTCATTAACGAAA 57.557 29.630 0.00 0.00 34.08 3.46
3125 10475 9.704098 GTAATCCTGATTTCTCATTAACGAAAC 57.296 33.333 0.00 0.00 32.55 2.78
3162 10513 6.109359 CCCTTGTACTGTTTCATTCTAGAGG 58.891 44.000 0.00 0.00 0.00 3.69
3165 10516 8.311836 CCTTGTACTGTTTCATTCTAGAGGTAA 58.688 37.037 0.00 0.00 0.00 2.85
3287 10648 3.711704 TCCTAGACCAATTGCTCCTTAGG 59.288 47.826 0.00 5.03 0.00 2.69
3379 12479 2.582052 TGTTGTTTCCACTTAGCCCTG 58.418 47.619 0.00 0.00 0.00 4.45
3382 12482 1.168714 GTTTCCACTTAGCCCTGCTG 58.831 55.000 0.00 0.00 40.10 4.41
3438 12538 4.201910 CCACTAAAATTACAGGCCATCACG 60.202 45.833 5.01 0.00 0.00 4.35
3474 12875 1.671054 GCGCCTCACTTACTGGCAA 60.671 57.895 0.00 0.00 46.39 4.52
3487 12889 7.013750 TCACTTACTGGCAAAATTCACACATTA 59.986 33.333 0.00 0.00 0.00 1.90
3566 13034 4.501071 GTTCCTTCCGTTCTGCTATGTTA 58.499 43.478 0.00 0.00 0.00 2.41
3595 13063 4.382470 CCACTTGTCTACTTCCTCATCCTG 60.382 50.000 0.00 0.00 0.00 3.86
3618 13086 2.819608 TCAGGCTGTCTTTTGTTATGCC 59.180 45.455 15.27 0.00 39.19 4.40
3622 13090 3.255642 GGCTGTCTTTTGTTATGCCTTCA 59.744 43.478 0.00 0.00 36.32 3.02
3759 13250 1.368374 TTAGCCTACCTGGTTGCCTT 58.632 50.000 3.84 0.00 38.35 4.35
3820 13311 3.971032 AGTTGCTACTCTGTTTTGCAC 57.029 42.857 0.00 0.00 33.13 4.57
3832 13346 1.396996 GTTTTGCACGAGTCTGTGTGT 59.603 47.619 13.90 0.00 41.94 3.72
3833 13347 1.006086 TTTGCACGAGTCTGTGTGTG 58.994 50.000 13.90 4.40 41.94 3.82
3835 13349 4.418337 CACGAGTCTGTGTGTGCA 57.582 55.556 0.00 0.00 35.12 4.57
3836 13350 2.219847 CACGAGTCTGTGTGTGCAG 58.780 57.895 0.00 0.00 37.81 4.41
3837 13351 1.068083 ACGAGTCTGTGTGTGCAGG 59.932 57.895 0.00 0.00 37.12 4.85
3838 13352 1.665916 CGAGTCTGTGTGTGCAGGG 60.666 63.158 0.00 0.00 37.12 4.45
3839 13353 1.748403 GAGTCTGTGTGTGCAGGGA 59.252 57.895 0.00 0.00 37.12 4.20
3840 13354 0.320247 GAGTCTGTGTGTGCAGGGAG 60.320 60.000 0.00 0.00 37.12 4.30
3841 13355 1.963338 GTCTGTGTGTGCAGGGAGC 60.963 63.158 0.00 0.00 45.96 4.70
3842 13356 2.142761 TCTGTGTGTGCAGGGAGCT 61.143 57.895 0.00 0.00 45.94 4.09
3843 13357 1.964891 CTGTGTGTGCAGGGAGCTG 60.965 63.158 0.00 0.00 45.94 4.24
3889 13411 7.773224 TCATTCTCCAGTAACTGAAAAAGACAA 59.227 33.333 0.00 0.00 32.44 3.18
3972 13498 9.855361 CTAGTTGCTTCGTTTAATTATGATGAG 57.145 33.333 0.00 0.00 0.00 2.90
4004 13530 2.428890 ACCGGAGCTCATTCTAGTTCTG 59.571 50.000 17.19 0.00 34.01 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 7.069578 TCTCGATACCTATATAAAATGAGGGGC 59.930 40.741 0.00 0.00 33.02 5.80
8 9 7.069578 GGCCCTCTCGATACCTATATAAAATGA 59.930 40.741 0.00 0.00 0.00 2.57
9 10 7.070074 AGGCCCTCTCGATACCTATATAAAATG 59.930 40.741 0.00 0.00 0.00 2.32
10 11 7.133483 AGGCCCTCTCGATACCTATATAAAAT 58.867 38.462 0.00 0.00 0.00 1.82
11 12 6.500336 AGGCCCTCTCGATACCTATATAAAA 58.500 40.000 0.00 0.00 0.00 1.52
12 13 6.088541 AGGCCCTCTCGATACCTATATAAA 57.911 41.667 0.00 0.00 0.00 1.40
13 14 5.728937 AGGCCCTCTCGATACCTATATAA 57.271 43.478 0.00 0.00 0.00 0.98
14 15 5.910003 ACTAGGCCCTCTCGATACCTATATA 59.090 44.000 0.00 0.00 32.71 0.86
15 16 4.727841 ACTAGGCCCTCTCGATACCTATAT 59.272 45.833 0.00 0.00 32.71 0.86
16 17 4.110072 ACTAGGCCCTCTCGATACCTATA 58.890 47.826 0.00 0.00 32.71 1.31
17 18 2.920941 ACTAGGCCCTCTCGATACCTAT 59.079 50.000 0.00 0.00 32.71 2.57
18 19 2.305343 GACTAGGCCCTCTCGATACCTA 59.695 54.545 0.00 0.00 31.79 3.08
19 20 1.074244 GACTAGGCCCTCTCGATACCT 59.926 57.143 0.00 0.00 34.42 3.08
20 21 1.536940 GACTAGGCCCTCTCGATACC 58.463 60.000 0.00 0.00 0.00 2.73
21 22 1.158434 CGACTAGGCCCTCTCGATAC 58.842 60.000 0.00 0.00 0.00 2.24
22 23 0.036448 CCGACTAGGCCCTCTCGATA 59.964 60.000 13.65 0.00 0.00 2.92
24 25 2.192443 CCGACTAGGCCCTCTCGA 59.808 66.667 13.65 0.00 0.00 4.04
25 26 0.465097 TAACCGACTAGGCCCTCTCG 60.465 60.000 0.00 2.39 46.52 4.04
26 27 1.031235 GTAACCGACTAGGCCCTCTC 58.969 60.000 0.00 0.00 46.52 3.20
27 28 0.630134 AGTAACCGACTAGGCCCTCT 59.370 55.000 0.00 0.00 46.52 3.69
28 29 1.482954 AAGTAACCGACTAGGCCCTC 58.517 55.000 0.00 0.00 46.52 4.30
29 30 2.291800 TGTAAGTAACCGACTAGGCCCT 60.292 50.000 0.00 0.00 46.52 5.19
31 32 3.874392 TTGTAAGTAACCGACTAGGCC 57.126 47.619 0.00 0.00 46.52 5.19
35 36 7.275888 TGTTCTCTTTGTAAGTAACCGACTA 57.724 36.000 0.00 0.00 37.44 2.59
36 37 6.152932 TGTTCTCTTTGTAAGTAACCGACT 57.847 37.500 0.00 0.00 41.56 4.18
38 39 6.518493 ACATGTTCTCTTTGTAAGTAACCGA 58.482 36.000 0.00 0.00 0.00 4.69
40 41 8.379457 AGAACATGTTCTCTTTGTAAGTAACC 57.621 34.615 31.06 4.75 46.13 2.85
47 48 9.997482 GTTGTTTTAGAACATGTTCTCTTTGTA 57.003 29.630 37.67 20.75 46.13 2.41
48 49 8.519526 TGTTGTTTTAGAACATGTTCTCTTTGT 58.480 29.630 37.67 19.91 46.13 2.83
51 52 7.416326 GGGTGTTGTTTTAGAACATGTTCTCTT 60.416 37.037 37.67 21.24 46.13 2.85
52 53 6.039382 GGGTGTTGTTTTAGAACATGTTCTCT 59.961 38.462 37.67 22.23 46.13 3.10
53 54 6.206498 GGGTGTTGTTTTAGAACATGTTCTC 58.794 40.000 37.67 25.55 46.13 2.87
55 56 5.163499 TGGGGTGTTGTTTTAGAACATGTTC 60.163 40.000 27.69 27.69 44.71 3.18
56 57 4.712337 TGGGGTGTTGTTTTAGAACATGTT 59.288 37.500 11.78 11.78 44.71 2.71
57 58 4.282496 TGGGGTGTTGTTTTAGAACATGT 58.718 39.130 0.00 0.00 44.71 3.21
58 59 4.927978 TGGGGTGTTGTTTTAGAACATG 57.072 40.909 0.00 0.00 44.71 3.21
60 61 3.068873 GCATGGGGTGTTGTTTTAGAACA 59.931 43.478 0.00 0.00 43.73 3.18
61 62 3.320826 AGCATGGGGTGTTGTTTTAGAAC 59.679 43.478 0.00 0.00 36.29 3.01
62 63 3.571590 AGCATGGGGTGTTGTTTTAGAA 58.428 40.909 0.00 0.00 0.00 2.10
63 64 3.237268 AGCATGGGGTGTTGTTTTAGA 57.763 42.857 0.00 0.00 0.00 2.10
64 65 4.082245 CCTAAGCATGGGGTGTTGTTTTAG 60.082 45.833 0.00 0.00 0.00 1.85
65 66 3.829601 CCTAAGCATGGGGTGTTGTTTTA 59.170 43.478 0.00 0.00 0.00 1.52
66 67 2.632512 CCTAAGCATGGGGTGTTGTTTT 59.367 45.455 0.00 0.00 0.00 2.43
67 68 2.247358 CCTAAGCATGGGGTGTTGTTT 58.753 47.619 0.00 0.00 0.00 2.83
68 69 1.146982 ACCTAAGCATGGGGTGTTGTT 59.853 47.619 0.00 0.00 31.48 2.83
69 70 0.777446 ACCTAAGCATGGGGTGTTGT 59.223 50.000 0.00 0.00 31.48 3.32
70 71 1.923356 AACCTAAGCATGGGGTGTTG 58.077 50.000 0.00 0.00 33.20 3.33
72 73 2.275466 ACTAACCTAAGCATGGGGTGT 58.725 47.619 0.00 0.00 33.20 4.16
75 76 8.706322 AATAATTAACTAACCTAAGCATGGGG 57.294 34.615 0.00 0.00 0.00 4.96
104 105 9.494271 CCAGTTGCTGACTATACAAATACATAT 57.506 33.333 0.00 0.00 36.65 1.78
105 106 7.441157 GCCAGTTGCTGACTATACAAATACATA 59.559 37.037 0.00 0.00 36.65 2.29
106 107 6.260936 GCCAGTTGCTGACTATACAAATACAT 59.739 38.462 0.00 0.00 36.65 2.29
107 108 5.584649 GCCAGTTGCTGACTATACAAATACA 59.415 40.000 0.00 0.00 36.65 2.29
108 109 6.049263 GCCAGTTGCTGACTATACAAATAC 57.951 41.667 0.00 0.00 36.65 1.89
123 124 4.380531 TGACTAATAGCATAGCCAGTTGC 58.619 43.478 0.00 0.00 39.17 4.17
124 125 5.106791 GCATGACTAATAGCATAGCCAGTTG 60.107 44.000 0.00 0.00 0.00 3.16
125 126 4.999950 GCATGACTAATAGCATAGCCAGTT 59.000 41.667 0.00 0.00 0.00 3.16
126 127 4.285517 AGCATGACTAATAGCATAGCCAGT 59.714 41.667 0.00 0.00 0.00 4.00
127 128 4.829968 AGCATGACTAATAGCATAGCCAG 58.170 43.478 0.00 0.00 0.00 4.85
128 129 4.897509 AGCATGACTAATAGCATAGCCA 57.102 40.909 0.00 0.00 0.00 4.75
129 130 5.814705 CCTAAGCATGACTAATAGCATAGCC 59.185 44.000 0.00 0.00 29.65 3.93
130 131 6.402222 ACCTAAGCATGACTAATAGCATAGC 58.598 40.000 0.00 0.65 29.65 2.97
131 132 9.579768 CTAACCTAAGCATGACTAATAGCATAG 57.420 37.037 0.00 0.00 0.00 2.23
132 133 9.090103 ACTAACCTAAGCATGACTAATAGCATA 57.910 33.333 0.00 0.00 0.00 3.14
133 134 7.967908 ACTAACCTAAGCATGACTAATAGCAT 58.032 34.615 0.00 0.00 0.00 3.79
135 136 9.760077 TTAACTAACCTAAGCATGACTAATAGC 57.240 33.333 0.00 0.00 0.00 2.97
138 139 9.953565 TTGTTAACTAACCTAAGCATGACTAAT 57.046 29.630 7.22 0.00 35.37 1.73
139 140 9.781633 TTTGTTAACTAACCTAAGCATGACTAA 57.218 29.630 7.22 0.00 35.37 2.24
140 141 9.953565 ATTTGTTAACTAACCTAAGCATGACTA 57.046 29.630 7.22 0.00 35.37 2.59
141 142 8.863872 ATTTGTTAACTAACCTAAGCATGACT 57.136 30.769 7.22 0.00 35.37 3.41
156 157 8.126700 GCGGTGCAGTATAAATATTTGTTAACT 58.873 33.333 11.05 3.09 0.00 2.24
157 158 7.377662 GGCGGTGCAGTATAAATATTTGTTAAC 59.622 37.037 11.05 0.00 0.00 2.01
158 159 7.067129 TGGCGGTGCAGTATAAATATTTGTTAA 59.933 33.333 11.05 0.00 0.00 2.01
159 160 6.542735 TGGCGGTGCAGTATAAATATTTGTTA 59.457 34.615 11.05 0.36 0.00 2.41
160 161 5.358442 TGGCGGTGCAGTATAAATATTTGTT 59.642 36.000 11.05 1.28 0.00 2.83
163 164 5.534654 ACATGGCGGTGCAGTATAAATATTT 59.465 36.000 5.89 5.89 0.00 1.40
164 165 5.070001 ACATGGCGGTGCAGTATAAATATT 58.930 37.500 0.00 0.00 0.00 1.28
165 166 4.651778 ACATGGCGGTGCAGTATAAATAT 58.348 39.130 0.00 0.00 0.00 1.28
166 167 4.079980 ACATGGCGGTGCAGTATAAATA 57.920 40.909 0.00 0.00 0.00 1.40
167 168 2.930950 ACATGGCGGTGCAGTATAAAT 58.069 42.857 0.00 0.00 0.00 1.40
168 169 2.411628 ACATGGCGGTGCAGTATAAA 57.588 45.000 0.00 0.00 0.00 1.40
169 170 2.432874 AGTACATGGCGGTGCAGTATAA 59.567 45.455 0.00 0.00 0.00 0.98
170 171 2.035449 GAGTACATGGCGGTGCAGTATA 59.965 50.000 0.00 0.00 0.00 1.47
171 172 0.830648 AGTACATGGCGGTGCAGTAT 59.169 50.000 0.00 0.00 0.00 2.12
172 173 0.174845 GAGTACATGGCGGTGCAGTA 59.825 55.000 0.00 0.00 0.00 2.74
173 174 1.079127 GAGTACATGGCGGTGCAGT 60.079 57.895 0.00 0.00 0.00 4.40
175 176 1.836999 AAGGAGTACATGGCGGTGCA 61.837 55.000 0.00 0.00 0.00 4.57
176 177 1.078426 AAGGAGTACATGGCGGTGC 60.078 57.895 0.00 0.00 0.00 5.01
179 180 0.251916 TTCCAAGGAGTACATGGCGG 59.748 55.000 0.00 0.00 34.13 6.13
182 183 5.192927 TGCTTAATTCCAAGGAGTACATGG 58.807 41.667 0.00 0.00 35.49 3.66
184 185 5.300286 GCATGCTTAATTCCAAGGAGTACAT 59.700 40.000 11.37 0.00 28.76 2.29
186 187 4.640201 TGCATGCTTAATTCCAAGGAGTAC 59.360 41.667 20.33 0.00 28.76 2.73
188 189 3.700538 TGCATGCTTAATTCCAAGGAGT 58.299 40.909 20.33 0.00 28.76 3.85
190 191 3.638160 GGATGCATGCTTAATTCCAAGGA 59.362 43.478 20.33 0.00 0.00 3.36
191 192 3.385433 TGGATGCATGCTTAATTCCAAGG 59.615 43.478 20.33 0.00 30.62 3.61
193 194 4.650131 TCATGGATGCATGCTTAATTCCAA 59.350 37.500 21.37 6.82 36.87 3.53
194 195 4.216708 TCATGGATGCATGCTTAATTCCA 58.783 39.130 21.37 20.61 37.63 3.53
196 197 7.600065 AGTAATCATGGATGCATGCTTAATTC 58.400 34.615 20.58 11.52 28.85 2.17
197 198 7.534723 AGTAATCATGGATGCATGCTTAATT 57.465 32.000 20.58 16.99 28.85 1.40
198 199 8.105197 TCTAGTAATCATGGATGCATGCTTAAT 58.895 33.333 21.55 21.55 30.30 1.40
199 200 7.452562 TCTAGTAATCATGGATGCATGCTTAA 58.547 34.615 20.58 9.17 28.85 1.85
201 202 5.872963 TCTAGTAATCATGGATGCATGCTT 58.127 37.500 21.37 19.74 32.87 3.91
202 203 5.494390 TCTAGTAATCATGGATGCATGCT 57.506 39.130 21.37 14.69 32.87 3.79
206 207 9.494271 GATTAACTTCTAGTAATCATGGATGCA 57.506 33.333 0.00 0.00 0.00 3.96
207 208 9.717942 AGATTAACTTCTAGTAATCATGGATGC 57.282 33.333 11.38 0.00 32.88 3.91
210 211 9.661954 AGGAGATTAACTTCTAGTAATCATGGA 57.338 33.333 11.38 0.00 31.69 3.41
223 224 9.157104 CAACCTCTTAAGAAGGAGATTAACTTC 57.843 37.037 20.98 0.00 42.56 3.01
224 225 8.661345 ACAACCTCTTAAGAAGGAGATTAACTT 58.339 33.333 20.98 5.98 0.00 2.66
225 226 8.208575 ACAACCTCTTAAGAAGGAGATTAACT 57.791 34.615 20.98 1.37 0.00 2.24
228 229 8.437274 AAGACAACCTCTTAAGAAGGAGATTA 57.563 34.615 20.98 0.00 37.46 1.75
231 232 6.239629 GGAAAGACAACCTCTTAAGAAGGAGA 60.240 42.308 20.98 0.00 38.37 3.71
232 233 5.935206 GGAAAGACAACCTCTTAAGAAGGAG 59.065 44.000 20.98 16.06 38.37 3.69
233 234 5.607171 AGGAAAGACAACCTCTTAAGAAGGA 59.393 40.000 20.98 0.00 38.37 3.36
235 236 7.672240 AGTAGGAAAGACAACCTCTTAAGAAG 58.328 38.462 6.63 2.82 38.37 2.85
236 237 7.509659 AGAGTAGGAAAGACAACCTCTTAAGAA 59.490 37.037 6.63 0.00 38.37 2.52
237 238 7.011382 AGAGTAGGAAAGACAACCTCTTAAGA 58.989 38.462 4.81 4.81 38.37 2.10
238 239 7.234661 AGAGTAGGAAAGACAACCTCTTAAG 57.765 40.000 0.00 0.00 38.37 1.85
239 240 7.613551 AAGAGTAGGAAAGACAACCTCTTAA 57.386 36.000 0.00 0.00 38.37 1.85
240 241 7.613551 AAAGAGTAGGAAAGACAACCTCTTA 57.386 36.000 0.00 0.00 38.37 2.10
241 242 6.502074 AAAGAGTAGGAAAGACAACCTCTT 57.498 37.500 0.00 0.00 41.39 2.85
242 243 7.509659 TCTTAAAGAGTAGGAAAGACAACCTCT 59.490 37.037 0.00 0.00 37.68 3.69
243 244 7.668492 TCTTAAAGAGTAGGAAAGACAACCTC 58.332 38.462 0.00 0.00 37.68 3.85
245 246 8.672823 TTTCTTAAAGAGTAGGAAAGACAACC 57.327 34.615 0.00 0.00 0.00 3.77
247 248 9.901172 ACTTTTCTTAAAGAGTAGGAAAGACAA 57.099 29.630 9.28 0.00 42.78 3.18
248 249 9.543783 GACTTTTCTTAAAGAGTAGGAAAGACA 57.456 33.333 9.28 0.00 42.78 3.41
249 250 9.767228 AGACTTTTCTTAAAGAGTAGGAAAGAC 57.233 33.333 9.28 4.20 42.78 3.01
250 251 9.984190 GAGACTTTTCTTAAAGAGTAGGAAAGA 57.016 33.333 9.28 0.00 42.78 2.52
251 252 9.210329 GGAGACTTTTCTTAAAGAGTAGGAAAG 57.790 37.037 4.77 3.94 42.78 2.62
252 253 8.935741 AGGAGACTTTTCTTAAAGAGTAGGAAA 58.064 33.333 4.77 0.00 42.78 3.13
253 254 8.493787 AGGAGACTTTTCTTAAAGAGTAGGAA 57.506 34.615 4.77 0.00 42.78 3.36
272 273 1.135344 CGACGAAAGGAGGAAGGAGAC 60.135 57.143 0.00 0.00 0.00 3.36
273 274 1.174783 CGACGAAAGGAGGAAGGAGA 58.825 55.000 0.00 0.00 0.00 3.71
274 275 0.173708 CCGACGAAAGGAGGAAGGAG 59.826 60.000 0.00 0.00 34.33 3.69
275 276 1.885163 GCCGACGAAAGGAGGAAGGA 61.885 60.000 0.00 0.00 34.33 3.36
276 277 1.448013 GCCGACGAAAGGAGGAAGG 60.448 63.158 0.00 0.00 34.33 3.46
277 278 1.805945 CGCCGACGAAAGGAGGAAG 60.806 63.158 0.00 0.00 43.93 3.46
278 279 2.260434 CGCCGACGAAAGGAGGAA 59.740 61.111 0.00 0.00 43.93 3.36
301 302 4.554036 GAGGTGGGGCGGATCAGC 62.554 72.222 9.58 9.58 0.00 4.26
302 303 2.765807 AGAGGTGGGGCGGATCAG 60.766 66.667 0.00 0.00 0.00 2.90
304 305 2.143419 ATCAGAGGTGGGGCGGATC 61.143 63.158 0.00 0.00 0.00 3.36
305 306 2.040464 ATCAGAGGTGGGGCGGAT 60.040 61.111 0.00 0.00 0.00 4.18
307 308 4.181010 CCATCAGAGGTGGGGCGG 62.181 72.222 0.00 0.00 32.98 6.13
308 309 4.864334 GCCATCAGAGGTGGGGCG 62.864 72.222 0.00 0.00 35.65 6.13
309 310 4.512914 GGCCATCAGAGGTGGGGC 62.513 72.222 0.00 0.00 41.33 5.80
310 311 1.867595 AAAGGCCATCAGAGGTGGGG 61.868 60.000 5.01 0.00 37.22 4.96
311 312 0.682209 CAAAGGCCATCAGAGGTGGG 60.682 60.000 5.01 0.00 37.22 4.61
312 313 0.682209 CCAAAGGCCATCAGAGGTGG 60.682 60.000 5.01 0.00 39.80 4.61
313 314 0.682209 CCCAAAGGCCATCAGAGGTG 60.682 60.000 5.01 0.00 0.00 4.00
314 315 1.142688 ACCCAAAGGCCATCAGAGGT 61.143 55.000 5.01 0.13 36.11 3.85
316 317 0.745845 CGACCCAAAGGCCATCAGAG 60.746 60.000 5.01 0.00 36.11 3.35
317 318 1.299648 CGACCCAAAGGCCATCAGA 59.700 57.895 5.01 0.00 36.11 3.27
319 320 1.303236 CACGACCCAAAGGCCATCA 60.303 57.895 5.01 0.00 36.11 3.07
321 322 2.035626 CCACGACCCAAAGGCCAT 59.964 61.111 5.01 0.00 36.11 4.40
322 323 3.172106 TCCACGACCCAAAGGCCA 61.172 61.111 5.01 0.00 36.11 5.36
323 324 2.359975 CTCCACGACCCAAAGGCC 60.360 66.667 0.00 0.00 36.11 5.19
324 325 1.671379 GTCTCCACGACCCAAAGGC 60.671 63.158 0.00 0.00 36.62 4.35
325 326 4.695560 GTCTCCACGACCCAAAGG 57.304 61.111 0.00 0.00 36.62 3.11
334 335 1.355796 TAAATTGCGCCGTCTCCACG 61.356 55.000 4.18 0.00 46.29 4.94
335 336 0.800012 TTAAATTGCGCCGTCTCCAC 59.200 50.000 4.18 0.00 0.00 4.02
336 337 1.198178 GTTTAAATTGCGCCGTCTCCA 59.802 47.619 4.18 0.00 0.00 3.86
337 338 1.466866 GGTTTAAATTGCGCCGTCTCC 60.467 52.381 4.18 0.00 0.00 3.71
338 339 1.198178 TGGTTTAAATTGCGCCGTCTC 59.802 47.619 4.18 0.00 0.00 3.36
339 340 1.240256 TGGTTTAAATTGCGCCGTCT 58.760 45.000 4.18 0.00 0.00 4.18
340 341 2.053282 TTGGTTTAAATTGCGCCGTC 57.947 45.000 4.18 0.00 0.00 4.79
341 342 2.128821 GTTTGGTTTAAATTGCGCCGT 58.871 42.857 4.18 0.00 0.00 5.68
342 343 2.399448 AGTTTGGTTTAAATTGCGCCG 58.601 42.857 4.18 0.00 0.00 6.46
343 344 4.055360 AGAAGTTTGGTTTAAATTGCGCC 58.945 39.130 4.18 0.00 0.00 6.53
344 345 4.608222 GCAGAAGTTTGGTTTAAATTGCGC 60.608 41.667 0.00 0.00 0.00 6.09
348 349 6.144078 ACTCGCAGAAGTTTGGTTTAAATT 57.856 33.333 0.00 0.00 34.09 1.82
349 350 5.767816 ACTCGCAGAAGTTTGGTTTAAAT 57.232 34.783 0.00 0.00 34.09 1.40
350 351 5.570234 AACTCGCAGAAGTTTGGTTTAAA 57.430 34.783 0.00 0.00 34.09 1.52
353 354 2.031683 CGAACTCGCAGAAGTTTGGTTT 59.968 45.455 3.87 0.00 34.09 3.27
356 357 1.217882 ACGAACTCGCAGAAGTTTGG 58.782 50.000 12.85 5.49 44.43 3.28
357 358 2.284150 TGAACGAACTCGCAGAAGTTTG 59.716 45.455 0.00 8.57 44.43 2.93
358 359 2.546778 TGAACGAACTCGCAGAAGTTT 58.453 42.857 0.00 0.00 44.43 2.66
359 360 2.218953 TGAACGAACTCGCAGAAGTT 57.781 45.000 0.00 0.00 44.43 2.66
361 362 5.456192 AAATATGAACGAACTCGCAGAAG 57.544 39.130 0.00 0.00 44.43 2.85
362 363 6.954616 TTAAATATGAACGAACTCGCAGAA 57.045 33.333 0.00 0.00 44.43 3.02
363 364 6.954616 TTTAAATATGAACGAACTCGCAGA 57.045 33.333 0.00 0.00 44.43 4.26
398 399 3.586892 GAGCAGAGTAGTAGCGGTTTTT 58.413 45.455 0.00 0.00 0.00 1.94
399 400 2.094130 GGAGCAGAGTAGTAGCGGTTTT 60.094 50.000 0.00 0.00 0.00 2.43
400 401 1.477295 GGAGCAGAGTAGTAGCGGTTT 59.523 52.381 0.00 0.00 0.00 3.27
402 403 0.256464 AGGAGCAGAGTAGTAGCGGT 59.744 55.000 0.00 0.00 0.00 5.68
403 404 0.948678 GAGGAGCAGAGTAGTAGCGG 59.051 60.000 0.00 0.00 0.00 5.52
404 405 0.584396 CGAGGAGCAGAGTAGTAGCG 59.416 60.000 0.00 0.00 0.00 4.26
417 418 3.213402 GAGGGAGACGGCGAGGAG 61.213 72.222 16.62 0.00 0.00 3.69
454 455 0.729116 CATGTAGAACTGCAAGGGCG 59.271 55.000 0.00 0.00 45.35 6.13
455 456 0.453390 GCATGTAGAACTGCAAGGGC 59.547 55.000 0.00 0.00 39.30 5.19
456 457 1.098050 GGCATGTAGAACTGCAAGGG 58.902 55.000 0.00 0.00 40.18 3.95
457 458 0.729116 CGGCATGTAGAACTGCAAGG 59.271 55.000 0.00 0.00 40.18 3.61
458 459 1.662629 CTCGGCATGTAGAACTGCAAG 59.337 52.381 0.00 0.00 40.18 4.01
459 460 1.675714 CCTCGGCATGTAGAACTGCAA 60.676 52.381 0.00 0.00 40.18 4.08
460 461 0.108186 CCTCGGCATGTAGAACTGCA 60.108 55.000 0.00 0.00 40.18 4.41
461 462 0.175760 TCCTCGGCATGTAGAACTGC 59.824 55.000 0.00 0.00 37.66 4.40
462 463 2.544685 CTTCCTCGGCATGTAGAACTG 58.455 52.381 0.00 0.00 0.00 3.16
463 464 1.134670 GCTTCCTCGGCATGTAGAACT 60.135 52.381 0.00 0.00 0.00 3.01
464 465 1.134670 AGCTTCCTCGGCATGTAGAAC 60.135 52.381 0.00 0.00 0.00 3.01
465 466 1.134699 CAGCTTCCTCGGCATGTAGAA 60.135 52.381 0.00 0.00 0.00 2.10
467 468 0.176680 ACAGCTTCCTCGGCATGTAG 59.823 55.000 0.00 0.00 0.00 2.74
468 469 1.409064 CTACAGCTTCCTCGGCATGTA 59.591 52.381 0.00 0.00 0.00 2.29
469 470 0.176680 CTACAGCTTCCTCGGCATGT 59.823 55.000 0.00 0.00 0.00 3.21
473 474 0.460459 GGTTCTACAGCTTCCTCGGC 60.460 60.000 0.00 0.00 0.00 5.54
474 475 0.179134 CGGTTCTACAGCTTCCTCGG 60.179 60.000 0.00 0.00 0.00 4.63
475 476 0.802607 GCGGTTCTACAGCTTCCTCG 60.803 60.000 0.00 0.00 36.37 4.63
476 477 0.802607 CGCGGTTCTACAGCTTCCTC 60.803 60.000 0.00 0.00 37.15 3.71
478 479 1.080025 ACGCGGTTCTACAGCTTCC 60.080 57.895 12.47 0.00 37.15 3.46
479 480 0.666577 ACACGCGGTTCTACAGCTTC 60.667 55.000 12.47 0.00 37.15 3.86
480 481 0.599558 TACACGCGGTTCTACAGCTT 59.400 50.000 12.47 0.00 37.15 3.74
482 483 0.109412 ACTACACGCGGTTCTACAGC 60.109 55.000 12.47 0.00 35.94 4.40
484 485 0.166597 CGACTACACGCGGTTCTACA 59.833 55.000 12.47 0.00 0.00 2.74
485 486 2.921996 CGACTACACGCGGTTCTAC 58.078 57.895 12.47 0.00 0.00 2.59
545 546 4.792804 GAGGGCTGCAGCAGGGAC 62.793 72.222 37.63 20.94 44.36 4.46
596 597 4.808238 GACGACGACGAGGACGCC 62.808 72.222 15.32 0.00 43.96 5.68
603 604 2.128017 CGACAACGACGACGACGA 60.128 61.111 25.15 0.00 41.06 4.20
604 605 2.128017 TCGACAACGACGACGACG 60.128 61.111 17.60 17.60 43.81 5.12
605 606 1.791283 CCTCGACAACGACGACGAC 60.791 63.158 15.32 0.00 43.81 4.34
607 608 1.791283 GTCCTCGACAACGACGACG 60.791 63.158 5.58 5.58 43.81 5.12
608 609 1.791283 CGTCCTCGACAACGACGAC 60.791 63.158 0.00 0.00 44.57 4.34
610 611 3.164011 GCGTCCTCGACAACGACG 61.164 66.667 16.61 14.51 43.81 5.12
611 612 3.164011 CGCGTCCTCGACAACGAC 61.164 66.667 16.61 8.42 43.81 4.34
630 631 2.658707 GCAGTGAAGGCGTGACGAC 61.659 63.158 10.10 5.65 33.59 4.34
631 632 2.355837 GCAGTGAAGGCGTGACGA 60.356 61.111 10.10 0.00 0.00 4.20
653 654 2.484062 GCCATTGATGCCTCACGGG 61.484 63.158 8.23 6.34 38.36 5.28
654 655 2.827051 CGCCATTGATGCCTCACGG 61.827 63.158 0.00 0.00 0.00 4.94
655 656 2.711311 CGCCATTGATGCCTCACG 59.289 61.111 0.00 0.00 0.00 4.35
656 657 1.442526 CTCCGCCATTGATGCCTCAC 61.443 60.000 0.00 0.00 0.00 3.51
658 659 1.895707 CCTCCGCCATTGATGCCTC 60.896 63.158 0.00 0.00 0.00 4.70
659 660 2.194056 CCTCCGCCATTGATGCCT 59.806 61.111 0.00 0.00 0.00 4.75
661 662 2.517875 AGCCTCCGCCATTGATGC 60.518 61.111 0.00 0.00 34.57 3.91
662 663 1.153107 TCAGCCTCCGCCATTGATG 60.153 57.895 0.00 0.00 34.57 3.07
663 664 1.153086 GTCAGCCTCCGCCATTGAT 60.153 57.895 0.00 0.00 34.57 2.57
664 665 2.268920 GTCAGCCTCCGCCATTGA 59.731 61.111 0.00 0.00 34.57 2.57
666 667 4.473520 CGGTCAGCCTCCGCCATT 62.474 66.667 0.00 0.00 41.48 3.16
695 696 4.424566 AATGCCAAAGCTGCCGCG 62.425 61.111 0.00 0.00 42.32 6.46
696 697 2.567564 ATCAATGCCAAAGCTGCCGC 62.568 55.000 0.00 0.00 40.80 6.53
697 698 0.108520 AATCAATGCCAAAGCTGCCG 60.109 50.000 0.00 0.00 40.80 5.69
699 700 1.274596 CGAATCAATGCCAAAGCTGC 58.725 50.000 0.00 0.00 40.80 5.25
700 701 1.274596 GCGAATCAATGCCAAAGCTG 58.725 50.000 0.00 0.00 40.80 4.24
701 702 3.727419 GCGAATCAATGCCAAAGCT 57.273 47.368 0.00 0.00 40.80 3.74
708 709 4.612536 CCCGCGGCGAATCAATGC 62.613 66.667 25.92 0.00 0.00 3.56
713 714 2.577763 CTTGTTTCCCGCGGCGAATC 62.578 60.000 25.92 21.66 0.00 2.52
715 716 3.350612 CTTGTTTCCCGCGGCGAA 61.351 61.111 25.92 21.49 0.00 4.70
720 721 3.124921 ATCGCCTTGTTTCCCGCG 61.125 61.111 0.00 0.00 45.76 6.46
722 723 1.369091 CCTCATCGCCTTGTTTCCCG 61.369 60.000 0.00 0.00 0.00 5.14
723 724 0.035439 TCCTCATCGCCTTGTTTCCC 60.035 55.000 0.00 0.00 0.00 3.97
724 725 1.087501 GTCCTCATCGCCTTGTTTCC 58.912 55.000 0.00 0.00 0.00 3.13
725 726 0.721718 CGTCCTCATCGCCTTGTTTC 59.278 55.000 0.00 0.00 0.00 2.78
726 727 0.320374 TCGTCCTCATCGCCTTGTTT 59.680 50.000 0.00 0.00 0.00 2.83
727 728 0.389948 GTCGTCCTCATCGCCTTGTT 60.390 55.000 0.00 0.00 0.00 2.83
729 730 1.874019 CGTCGTCCTCATCGCCTTG 60.874 63.158 0.00 0.00 0.00 3.61
730 731 1.592400 TTCGTCGTCCTCATCGCCTT 61.592 55.000 0.00 0.00 0.00 4.35
732 733 1.586564 CTTCGTCGTCCTCATCGCC 60.587 63.158 0.00 0.00 0.00 5.54
733 734 2.224885 GCTTCGTCGTCCTCATCGC 61.225 63.158 0.00 0.00 0.00 4.58
735 736 1.586564 CCGCTTCGTCGTCCTCATC 60.587 63.158 0.00 0.00 0.00 2.92
741 742 3.940975 TTCTCGCCGCTTCGTCGTC 62.941 63.158 0.00 0.00 0.00 4.20
742 743 3.948086 CTTCTCGCCGCTTCGTCGT 62.948 63.158 0.00 0.00 0.00 4.34
743 744 3.241059 CTTCTCGCCGCTTCGTCG 61.241 66.667 0.00 0.00 0.00 5.12
747 748 3.251043 CTCGCTTCTCGCCGCTTC 61.251 66.667 0.00 0.00 38.27 3.86
751 752 4.161976 TCGTCTCGCTTCTCGCCG 62.162 66.667 0.00 0.00 38.27 6.46
752 753 2.277628 CTCGTCTCGCTTCTCGCC 60.278 66.667 0.00 0.00 38.27 5.54
753 754 1.581657 GACTCGTCTCGCTTCTCGC 60.582 63.158 0.00 0.00 38.27 5.03
754 755 1.296288 CGACTCGTCTCGCTTCTCG 60.296 63.158 0.00 0.00 40.15 4.04
755 756 4.655154 CGACTCGTCTCGCTTCTC 57.345 61.111 0.00 0.00 0.00 2.87
762 763 1.803519 CTTGCCAGCGACTCGTCTC 60.804 63.158 0.00 0.00 0.00 3.36
763 764 2.259818 CTTGCCAGCGACTCGTCT 59.740 61.111 0.00 0.00 0.00 4.18
765 766 3.288308 CTCCTTGCCAGCGACTCGT 62.288 63.158 0.00 0.00 0.00 4.18
766 767 2.507992 CTCCTTGCCAGCGACTCG 60.508 66.667 0.00 0.00 0.00 4.18
767 768 2.125350 CCTCCTTGCCAGCGACTC 60.125 66.667 0.00 0.00 0.00 3.36
768 769 3.710722 CCCTCCTTGCCAGCGACT 61.711 66.667 0.00 0.00 0.00 4.18
793 794 1.833860 TTGTTTTTGGCGCGAAAGAG 58.166 45.000 17.08 0.00 0.00 2.85
794 795 2.500509 ATTGTTTTTGGCGCGAAAGA 57.499 40.000 17.08 10.76 0.00 2.52
796 797 1.518929 CGAATTGTTTTTGGCGCGAAA 59.481 42.857 13.91 13.91 0.00 3.46
797 798 1.124462 CGAATTGTTTTTGGCGCGAA 58.876 45.000 12.10 0.00 0.00 4.70
798 799 1.272114 GCGAATTGTTTTTGGCGCGA 61.272 50.000 12.10 0.00 35.02 5.87
799 800 1.127620 GCGAATTGTTTTTGGCGCG 59.872 52.632 0.00 0.00 35.02 6.86
800 801 1.491127 GGCGAATTGTTTTTGGCGC 59.509 52.632 0.00 0.00 43.27 6.53
801 802 1.613347 CGGGCGAATTGTTTTTGGCG 61.613 55.000 0.00 0.00 31.83 5.69
802 803 1.288419 CCGGGCGAATTGTTTTTGGC 61.288 55.000 0.00 0.00 0.00 4.52
803 804 1.288419 GCCGGGCGAATTGTTTTTGG 61.288 55.000 1.81 0.00 0.00 3.28
804 805 2.149555 GCCGGGCGAATTGTTTTTG 58.850 52.632 1.81 0.00 0.00 2.44
805 806 4.665431 GCCGGGCGAATTGTTTTT 57.335 50.000 1.81 0.00 0.00 1.94
859 860 3.336715 GAAATTGGTGCCGGCGGAC 62.337 63.158 33.44 23.43 0.00 4.79
860 861 3.059386 GAAATTGGTGCCGGCGGA 61.059 61.111 33.44 12.50 0.00 5.54
861 862 4.474846 CGAAATTGGTGCCGGCGG 62.475 66.667 24.35 24.35 0.00 6.13
865 866 4.128388 GGGCCGAAATTGGTGCCG 62.128 66.667 0.00 0.00 44.96 5.69
866 867 4.128388 CGGGCCGAAATTGGTGCC 62.128 66.667 24.41 4.26 43.26 5.01
867 868 3.051392 CTCGGGCCGAAATTGGTGC 62.051 63.158 30.59 0.00 34.74 5.01
883 884 2.489751 CCCAATTTTCGCCGGCTC 59.510 61.111 26.68 0.00 0.00 4.70
884 885 3.758931 GCCCAATTTTCGCCGGCT 61.759 61.111 26.68 0.86 36.65 5.52
885 886 4.812476 GGCCCAATTTTCGCCGGC 62.812 66.667 19.07 19.07 38.96 6.13
887 888 2.645192 AAGGGCCCAATTTTCGCCG 61.645 57.895 27.56 0.00 43.99 6.46
888 889 1.079197 CAAGGGCCCAATTTTCGCC 60.079 57.895 27.56 0.00 42.23 5.54
889 890 1.079197 CCAAGGGCCCAATTTTCGC 60.079 57.895 27.56 0.00 0.00 4.70
890 891 1.596408 CCCAAGGGCCCAATTTTCG 59.404 57.895 27.56 1.16 0.00 3.46
891 892 0.546507 TCCCCAAGGGCCCAATTTTC 60.547 55.000 27.56 0.00 43.94 2.29
892 893 0.840288 GTCCCCAAGGGCCCAATTTT 60.840 55.000 27.56 6.31 43.94 1.82
893 894 1.229496 GTCCCCAAGGGCCCAATTT 60.229 57.895 27.56 6.77 43.94 1.82
894 895 2.449777 GTCCCCAAGGGCCCAATT 59.550 61.111 27.56 7.69 43.94 2.32
895 896 4.060667 CGTCCCCAAGGGCCCAAT 62.061 66.667 27.56 9.94 43.94 3.16
901 902 4.760047 CAGTCGCGTCCCCAAGGG 62.760 72.222 5.77 0.00 46.11 3.95
902 903 4.760047 CCAGTCGCGTCCCCAAGG 62.760 72.222 5.77 0.00 0.00 3.61
903 904 3.691342 TCCAGTCGCGTCCCCAAG 61.691 66.667 5.77 0.00 0.00 3.61
904 905 3.998672 GTCCAGTCGCGTCCCCAA 61.999 66.667 5.77 0.00 0.00 4.12
908 909 2.830704 AAATCGGTCCAGTCGCGTCC 62.831 60.000 5.77 0.00 0.00 4.79
909 910 1.012486 AAAATCGGTCCAGTCGCGTC 61.012 55.000 5.77 0.00 0.00 5.19
910 911 0.601841 AAAAATCGGTCCAGTCGCGT 60.602 50.000 5.77 0.00 0.00 6.01
911 912 2.159181 AAAAATCGGTCCAGTCGCG 58.841 52.632 0.00 0.00 0.00 5.87
935 936 3.788766 CGACTTTTCAGCCGCCGG 61.789 66.667 0.00 0.00 0.00 6.13
936 937 4.445545 GCGACTTTTCAGCCGCCG 62.446 66.667 0.00 0.00 45.46 6.46
941 942 2.335712 CCCCAGGCGACTTTTCAGC 61.336 63.158 0.00 0.00 40.21 4.26
942 943 1.675641 CCCCCAGGCGACTTTTCAG 60.676 63.158 0.00 0.00 40.21 3.02
943 944 2.434331 CCCCCAGGCGACTTTTCA 59.566 61.111 0.00 0.00 40.21 2.69
957 958 2.364780 CGTCCCCAACTAGACCCCC 61.365 68.421 0.00 0.00 0.00 5.40
958 959 3.027675 GCGTCCCCAACTAGACCCC 62.028 68.421 0.00 0.00 0.00 4.95
959 960 2.240162 CTGCGTCCCCAACTAGACCC 62.240 65.000 0.00 0.00 0.00 4.46
960 961 1.218316 CTGCGTCCCCAACTAGACC 59.782 63.158 0.00 0.00 0.00 3.85
961 962 1.448013 GCTGCGTCCCCAACTAGAC 60.448 63.158 0.00 0.00 0.00 2.59
962 963 1.609501 AGCTGCGTCCCCAACTAGA 60.610 57.895 0.00 0.00 0.00 2.43
963 964 1.448540 CAGCTGCGTCCCCAACTAG 60.449 63.158 0.00 0.00 0.00 2.57
964 965 2.662596 CAGCTGCGTCCCCAACTA 59.337 61.111 0.00 0.00 0.00 2.24
965 966 4.335647 CCAGCTGCGTCCCCAACT 62.336 66.667 8.66 0.00 0.00 3.16
966 967 4.329545 TCCAGCTGCGTCCCCAAC 62.330 66.667 8.66 0.00 0.00 3.77
967 968 4.020617 CTCCAGCTGCGTCCCCAA 62.021 66.667 8.66 0.00 0.00 4.12
969 970 3.474570 ATCTCCAGCTGCGTCCCC 61.475 66.667 8.66 0.00 0.00 4.81
970 971 2.202987 CATCTCCAGCTGCGTCCC 60.203 66.667 8.66 0.00 0.00 4.46
971 972 2.894387 GCATCTCCAGCTGCGTCC 60.894 66.667 8.66 0.00 0.00 4.79
972 973 1.882167 GAGCATCTCCAGCTGCGTC 60.882 63.158 8.66 0.00 43.58 5.19
973 974 2.186384 GAGCATCTCCAGCTGCGT 59.814 61.111 8.66 0.00 43.58 5.24
987 988 5.535406 TCCCAGTTATACTAGTGCTAAGAGC 59.465 44.000 5.39 0.00 42.82 4.09
988 989 7.668052 AGATCCCAGTTATACTAGTGCTAAGAG 59.332 40.741 5.39 0.00 0.00 2.85
989 990 7.527796 AGATCCCAGTTATACTAGTGCTAAGA 58.472 38.462 5.39 0.00 0.00 2.10
990 991 7.768807 AGATCCCAGTTATACTAGTGCTAAG 57.231 40.000 5.39 0.00 0.00 2.18
991 992 8.005388 AGAAGATCCCAGTTATACTAGTGCTAA 58.995 37.037 5.39 0.66 0.00 3.09
992 993 7.448777 CAGAAGATCCCAGTTATACTAGTGCTA 59.551 40.741 5.39 0.00 0.00 3.49
993 994 6.266558 CAGAAGATCCCAGTTATACTAGTGCT 59.733 42.308 5.39 0.00 0.00 4.40
994 995 6.265649 TCAGAAGATCCCAGTTATACTAGTGC 59.734 42.308 5.39 0.00 0.00 4.40
995 996 7.825331 TCAGAAGATCCCAGTTATACTAGTG 57.175 40.000 5.39 0.00 0.00 2.74
996 997 7.453126 CCATCAGAAGATCCCAGTTATACTAGT 59.547 40.741 0.00 0.00 30.20 2.57
997 998 7.093552 CCCATCAGAAGATCCCAGTTATACTAG 60.094 44.444 0.00 0.00 30.20 2.57
998 999 6.726299 CCCATCAGAAGATCCCAGTTATACTA 59.274 42.308 0.00 0.00 30.20 1.82
999 1000 5.545723 CCCATCAGAAGATCCCAGTTATACT 59.454 44.000 0.00 0.00 30.20 2.12
1000 1001 5.799213 CCCATCAGAAGATCCCAGTTATAC 58.201 45.833 0.00 0.00 30.20 1.47
1001 1002 4.287067 GCCCATCAGAAGATCCCAGTTATA 59.713 45.833 0.00 0.00 30.20 0.98
1002 1003 3.073650 GCCCATCAGAAGATCCCAGTTAT 59.926 47.826 0.00 0.00 30.20 1.89
1003 1004 2.439507 GCCCATCAGAAGATCCCAGTTA 59.560 50.000 0.00 0.00 30.20 2.24
1004 1005 1.213926 GCCCATCAGAAGATCCCAGTT 59.786 52.381 0.00 0.00 30.20 3.16
1005 1006 0.842635 GCCCATCAGAAGATCCCAGT 59.157 55.000 0.00 0.00 30.20 4.00
1006 1007 0.110104 GGCCCATCAGAAGATCCCAG 59.890 60.000 0.00 0.00 30.20 4.45
1007 1008 1.355718 GGGCCCATCAGAAGATCCCA 61.356 60.000 19.95 0.00 36.36 4.37
1014 1015 4.161295 CTCGCGGGCCCATCAGAA 62.161 66.667 24.92 0.00 0.00 3.02
1049 1050 4.083271 GGAATGAGTAAAGTGAGTGGCAAC 60.083 45.833 0.00 0.00 0.00 4.17
1051 1052 3.072330 TGGAATGAGTAAAGTGAGTGGCA 59.928 43.478 0.00 0.00 0.00 4.92
1705 5569 0.976641 TGGAGATGGTGAAGAGCGTT 59.023 50.000 0.00 0.00 0.00 4.84
2173 6067 4.376615 CGCAAATTGAACAAAGCTGAATGG 60.377 41.667 0.00 0.00 0.00 3.16
2237 6135 4.801521 TCAGTGAATTGGATGGATGGAT 57.198 40.909 0.00 0.00 0.00 3.41
2238 6136 4.801521 ATCAGTGAATTGGATGGATGGA 57.198 40.909 0.00 0.00 0.00 3.41
2239 6137 5.361571 TGAAATCAGTGAATTGGATGGATGG 59.638 40.000 0.00 0.00 0.00 3.51
2240 6138 6.459670 TGAAATCAGTGAATTGGATGGATG 57.540 37.500 0.00 0.00 0.00 3.51
2241 6139 5.597182 CCTGAAATCAGTGAATTGGATGGAT 59.403 40.000 9.43 0.00 42.27 3.41
2242 6140 4.951715 CCTGAAATCAGTGAATTGGATGGA 59.048 41.667 9.43 0.00 42.27 3.41
2243 6141 4.441079 GCCTGAAATCAGTGAATTGGATGG 60.441 45.833 9.43 0.00 42.27 3.51
2244 6142 4.401519 AGCCTGAAATCAGTGAATTGGATG 59.598 41.667 9.43 0.00 42.27 3.51
2248 6146 3.119245 CCCAGCCTGAAATCAGTGAATTG 60.119 47.826 9.43 1.28 42.27 2.32
2250 6148 2.309755 TCCCAGCCTGAAATCAGTGAAT 59.690 45.455 9.43 0.00 42.27 2.57
2251 6149 1.704628 TCCCAGCCTGAAATCAGTGAA 59.295 47.619 9.43 0.00 42.27 3.18
2252 6150 1.361204 TCCCAGCCTGAAATCAGTGA 58.639 50.000 9.43 0.00 42.27 3.41
2253 6151 2.431954 ATCCCAGCCTGAAATCAGTG 57.568 50.000 9.43 2.47 42.27 3.66
2254 6152 4.228210 TCTTAATCCCAGCCTGAAATCAGT 59.772 41.667 9.43 0.00 42.27 3.41
2255 6153 4.578105 GTCTTAATCCCAGCCTGAAATCAG 59.422 45.833 3.37 3.37 43.40 2.90
2256 6154 4.018506 TGTCTTAATCCCAGCCTGAAATCA 60.019 41.667 0.00 0.00 0.00 2.57
2257 6155 4.526970 TGTCTTAATCCCAGCCTGAAATC 58.473 43.478 0.00 0.00 0.00 2.17
2423 9546 4.861462 CACGATGAGTATGTATGAGGATGC 59.139 45.833 0.00 0.00 0.00 3.91
2459 9598 4.096382 GTGAACATTTCATCGGCAGGTAAT 59.904 41.667 0.00 0.00 42.47 1.89
2462 9601 1.812571 GTGAACATTTCATCGGCAGGT 59.187 47.619 0.00 0.00 42.47 4.00
2463 9602 1.202065 CGTGAACATTTCATCGGCAGG 60.202 52.381 0.00 0.00 42.47 4.85
2464 9603 1.731709 TCGTGAACATTTCATCGGCAG 59.268 47.619 9.44 0.00 42.47 4.85
2465 9604 1.802069 TCGTGAACATTTCATCGGCA 58.198 45.000 9.44 0.00 42.47 5.69
2466 9605 2.892373 TTCGTGAACATTTCATCGGC 57.108 45.000 9.44 0.00 42.47 5.54
2467 9606 4.342772 GGATTTCGTGAACATTTCATCGG 58.657 43.478 9.44 0.00 42.47 4.18
2468 9607 4.142708 TGGGATTTCGTGAACATTTCATCG 60.143 41.667 0.00 0.00 42.47 3.84
2470 9609 5.418524 TGATGGGATTTCGTGAACATTTCAT 59.581 36.000 0.00 0.00 42.47 2.57
2489 9628 4.508461 TTCAGACTGCAACAAATGATGG 57.492 40.909 0.00 0.00 0.00 3.51
2493 9632 6.256104 TCACATTTTTCAGACTGCAACAAATG 59.744 34.615 17.77 17.77 36.59 2.32
2496 9635 5.321959 TCACATTTTTCAGACTGCAACAA 57.678 34.783 0.00 0.00 0.00 2.83
2497 9636 4.979943 TCACATTTTTCAGACTGCAACA 57.020 36.364 0.00 0.00 0.00 3.33
2498 9637 5.522456 TGATCACATTTTTCAGACTGCAAC 58.478 37.500 0.00 0.00 0.00 4.17
2530 9669 3.326747 CCAGAACTTAGGTCGAACTTGG 58.673 50.000 9.04 5.04 0.00 3.61
2602 9744 2.872245 CCTGGCACGATATTCACGAAAT 59.128 45.455 0.00 0.00 34.70 2.17
2765 10093 4.202305 TGAACTGGCCCACCTTTAATTTTG 60.202 41.667 0.00 0.00 36.63 2.44
2771 10099 1.145571 ACTGAACTGGCCCACCTTTA 58.854 50.000 0.00 0.00 36.63 1.85
2775 10103 1.903404 CCAACTGAACTGGCCCACC 60.903 63.158 0.00 0.00 0.00 4.61
2979 10309 8.695456 TCATGTTAGCACAATCTTCAGATACTA 58.305 33.333 0.00 0.00 36.16 1.82
3133 10484 9.449719 CTAGAATGAAACAGTACAAGGGTAATT 57.550 33.333 0.00 0.00 0.00 1.40
3146 10497 7.560368 ACTGGATTACCTCTAGAATGAAACAG 58.440 38.462 0.00 0.64 36.06 3.16
3165 10516 8.464404 CACAAAGATTCACATTTCATACTGGAT 58.536 33.333 0.00 0.00 0.00 3.41
3287 10648 2.945668 ACCTGAAAGTTGAGACTTGTGC 59.054 45.455 0.00 0.00 45.18 4.57
3382 12482 4.203654 AGGTAAGTACTTTGGCTAGTGC 57.796 45.455 14.49 2.49 38.76 4.40
3438 12538 6.370442 TGAGGCGCATTACATAAATGGTATAC 59.630 38.462 10.83 0.00 44.45 1.47
3474 12875 5.860941 TGGTGTTGGTAATGTGTGAATTT 57.139 34.783 0.00 0.00 0.00 1.82
3487 12889 4.953940 AATGCAAACTTATGGTGTTGGT 57.046 36.364 0.00 0.00 0.00 3.67
3595 13063 4.439289 GGCATAACAAAAGACAGCCTGATC 60.439 45.833 0.00 0.00 37.67 2.92
3618 13086 3.616935 CAACTGATGCCGCATGAAG 57.383 52.632 11.49 10.56 0.00 3.02
3759 13250 3.767131 TCGATCACTACAAGAACCATGGA 59.233 43.478 21.47 0.00 0.00 3.41
3820 13311 1.665916 CCCTGCACACACAGACTCG 60.666 63.158 0.00 0.00 40.25 4.18
3832 13346 3.170672 ACCACACAGCTCCCTGCA 61.171 61.111 0.00 0.00 45.94 4.41
3833 13347 1.544825 TAGACCACACAGCTCCCTGC 61.545 60.000 0.00 0.00 43.02 4.85
3834 13348 1.134580 CATAGACCACACAGCTCCCTG 60.135 57.143 0.00 0.00 44.80 4.45
3835 13349 1.198713 CATAGACCACACAGCTCCCT 58.801 55.000 0.00 0.00 0.00 4.20
3836 13350 0.179000 CCATAGACCACACAGCTCCC 59.821 60.000 0.00 0.00 0.00 4.30
3837 13351 0.462759 GCCATAGACCACACAGCTCC 60.463 60.000 0.00 0.00 0.00 4.70
3838 13352 0.462759 GGCCATAGACCACACAGCTC 60.463 60.000 0.00 0.00 0.00 4.09
3839 13353 1.200760 TGGCCATAGACCACACAGCT 61.201 55.000 0.00 0.00 30.29 4.24
3840 13354 0.745845 CTGGCCATAGACCACACAGC 60.746 60.000 5.51 0.00 32.49 4.40
3841 13355 0.904649 TCTGGCCATAGACCACACAG 59.095 55.000 5.51 0.00 32.49 3.66
3842 13356 0.904649 CTCTGGCCATAGACCACACA 59.095 55.000 12.76 0.00 32.49 3.72
3843 13357 1.195115 TCTCTGGCCATAGACCACAC 58.805 55.000 16.47 0.00 32.49 3.82
3889 13411 3.751518 CCTAAAGTTGCCAACTACACCT 58.248 45.455 11.10 0.00 41.91 4.00
3924 13446 4.586001 AGAGTTGACACCATTGCAGAATTT 59.414 37.500 0.00 0.00 0.00 1.82
3926 13448 3.759581 AGAGTTGACACCATTGCAGAAT 58.240 40.909 0.00 0.00 0.00 2.40
3972 13498 1.540707 GAGCTCCGGTATACAGGTAGC 59.459 57.143 24.84 24.84 35.96 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.