Multiple sequence alignment - TraesCS5D01G062900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G062900 chr5D 100.000 4212 0 0 1 4212 58503841 58508052 0.000000e+00 7779.0
1 TraesCS5D01G062900 chr5D 79.190 889 123 32 1 851 527144934 527145798 1.020000e-155 560.0
2 TraesCS5D01G062900 chr5B 90.613 2919 145 52 850 3668 62026299 62023410 0.000000e+00 3753.0
3 TraesCS5D01G062900 chr5B 90.612 2812 149 47 850 3581 63546847 63549623 0.000000e+00 3624.0
4 TraesCS5D01G062900 chr5B 78.394 847 130 32 10 825 338933622 338934446 6.290000e-138 501.0
5 TraesCS5D01G062900 chr5B 95.652 161 7 0 3575 3735 63549679 63549839 4.180000e-65 259.0
6 TraesCS5D01G062900 chr5B 90.000 130 10 2 4086 4212 62020030 62019901 9.370000e-37 165.0
7 TraesCS5D01G062900 chr5B 95.455 88 4 0 3664 3751 62020174 62020087 1.580000e-29 141.0
8 TraesCS5D01G062900 chr5A 91.395 2696 137 38 850 3465 46714463 46717143 0.000000e+00 3605.0
9 TraesCS5D01G062900 chr5A 87.500 656 35 23 1 648 46712975 46713591 0.000000e+00 713.0
10 TraesCS5D01G062900 chr6B 83.827 810 91 21 46 825 163224073 163224872 0.000000e+00 734.0
11 TraesCS5D01G062900 chr6B 81.818 660 94 19 1 648 641899022 641899667 8.020000e-147 531.0
12 TraesCS5D01G062900 chr6B 90.991 333 26 4 3754 4085 4226209 4225880 2.990000e-121 446.0
13 TraesCS5D01G062900 chr6B 85.305 279 24 6 3469 3746 606298557 606298295 5.370000e-69 272.0
14 TraesCS5D01G062900 chr1D 85.515 718 73 17 1 705 423304733 423305432 0.000000e+00 721.0
15 TraesCS5D01G062900 chr1D 80.000 825 109 37 36 825 240986520 240987323 3.680000e-155 558.0
16 TraesCS5D01G062900 chr1D 96.073 331 13 0 3754 4084 186103682 186103352 1.330000e-149 540.0
17 TraesCS5D01G062900 chr1D 91.018 334 27 3 3754 4086 17669327 17669658 8.310000e-122 448.0
18 TraesCS5D01G062900 chr4A 79.977 854 126 30 10 825 681616592 681615746 4.690000e-164 588.0
19 TraesCS5D01G062900 chr4A 79.363 848 120 34 10 825 91597382 91596558 2.860000e-151 545.0
20 TraesCS5D01G062900 chr4A 91.411 326 27 1 3759 4084 620580887 620581211 2.990000e-121 446.0
21 TraesCS5D01G062900 chr7D 96.364 330 12 0 3754 4083 514067088 514067417 1.030000e-150 544.0
22 TraesCS5D01G062900 chr7D 80.743 727 102 28 1 705 592567799 592567089 2.230000e-147 532.0
23 TraesCS5D01G062900 chr7D 78.413 857 129 35 1 825 552309568 552310400 1.350000e-139 507.0
24 TraesCS5D01G062900 chr7D 78.130 599 88 24 260 825 551607052 551606464 1.450000e-89 340.0
25 TraesCS5D01G062900 chr7D 78.533 559 68 26 322 851 431360452 431360987 1.890000e-83 320.0
26 TraesCS5D01G062900 chr6D 80.190 737 114 28 1 715 380588939 380589665 1.340000e-144 523.0
27 TraesCS5D01G062900 chr6D 92.515 334 21 4 3754 4085 333375698 333376029 3.810000e-130 475.0
28 TraesCS5D01G062900 chr6D 77.504 569 70 20 318 851 11444428 11443883 5.330000e-74 289.0
29 TraesCS5D01G062900 chr6D 83.636 275 28 6 3473 3746 404226025 404225767 4.210000e-60 243.0
30 TraesCS5D01G062900 chr6D 89.286 140 15 0 3469 3608 404225553 404225692 4.330000e-40 176.0
31 TraesCS5D01G062900 chr7A 93.994 333 19 1 3754 4086 733497463 733497794 1.750000e-138 503.0
32 TraesCS5D01G062900 chr7A 77.358 106 23 1 3487 3592 620400518 620400622 1.260000e-05 62.1
33 TraesCS5D01G062900 chr3D 93.656 331 18 2 3754 4084 256979556 256979229 3.780000e-135 492.0
34 TraesCS5D01G062900 chr3D 90.746 335 28 3 3754 4086 286777847 286778180 1.070000e-120 444.0
35 TraesCS5D01G062900 chr4D 75.650 846 121 53 43 848 4145040 4144240 4.030000e-90 342.0
36 TraesCS5D01G062900 chr6A 83.618 293 28 10 3457 3746 550741798 550741523 1.500000e-64 257.0
37 TraesCS5D01G062900 chr6A 77.616 344 46 18 530 851 83606925 83606591 3.350000e-41 180.0
38 TraesCS5D01G062900 chr6A 88.889 117 13 0 3469 3585 550741309 550741425 1.220000e-30 145.0
39 TraesCS5D01G062900 chr2B 85.906 149 21 0 3469 3617 245886260 245886112 4.360000e-35 159.0
40 TraesCS5D01G062900 chr3B 82.203 118 19 2 3463 3579 297340284 297340168 2.680000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G062900 chr5D 58503841 58508052 4211 False 7779.0 7779 100.000000 1 4212 1 chr5D.!!$F1 4211
1 TraesCS5D01G062900 chr5D 527144934 527145798 864 False 560.0 560 79.190000 1 851 1 chr5D.!!$F2 850
2 TraesCS5D01G062900 chr5B 63546847 63549839 2992 False 1941.5 3624 93.132000 850 3735 2 chr5B.!!$F2 2885
3 TraesCS5D01G062900 chr5B 62019901 62026299 6398 True 1353.0 3753 92.022667 850 4212 3 chr5B.!!$R1 3362
4 TraesCS5D01G062900 chr5B 338933622 338934446 824 False 501.0 501 78.394000 10 825 1 chr5B.!!$F1 815
5 TraesCS5D01G062900 chr5A 46712975 46717143 4168 False 2159.0 3605 89.447500 1 3465 2 chr5A.!!$F1 3464
6 TraesCS5D01G062900 chr6B 163224073 163224872 799 False 734.0 734 83.827000 46 825 1 chr6B.!!$F1 779
7 TraesCS5D01G062900 chr6B 641899022 641899667 645 False 531.0 531 81.818000 1 648 1 chr6B.!!$F2 647
8 TraesCS5D01G062900 chr1D 423304733 423305432 699 False 721.0 721 85.515000 1 705 1 chr1D.!!$F3 704
9 TraesCS5D01G062900 chr1D 240986520 240987323 803 False 558.0 558 80.000000 36 825 1 chr1D.!!$F2 789
10 TraesCS5D01G062900 chr4A 681615746 681616592 846 True 588.0 588 79.977000 10 825 1 chr4A.!!$R2 815
11 TraesCS5D01G062900 chr4A 91596558 91597382 824 True 545.0 545 79.363000 10 825 1 chr4A.!!$R1 815
12 TraesCS5D01G062900 chr7D 592567089 592567799 710 True 532.0 532 80.743000 1 705 1 chr7D.!!$R2 704
13 TraesCS5D01G062900 chr7D 552309568 552310400 832 False 507.0 507 78.413000 1 825 1 chr7D.!!$F3 824
14 TraesCS5D01G062900 chr7D 551606464 551607052 588 True 340.0 340 78.130000 260 825 1 chr7D.!!$R1 565
15 TraesCS5D01G062900 chr7D 431360452 431360987 535 False 320.0 320 78.533000 322 851 1 chr7D.!!$F1 529
16 TraesCS5D01G062900 chr6D 380588939 380589665 726 False 523.0 523 80.190000 1 715 1 chr6D.!!$F2 714
17 TraesCS5D01G062900 chr6D 11443883 11444428 545 True 289.0 289 77.504000 318 851 1 chr6D.!!$R1 533
18 TraesCS5D01G062900 chr4D 4144240 4145040 800 True 342.0 342 75.650000 43 848 1 chr4D.!!$R1 805

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
971 1779 0.398318 GGTCCACTTCTTCACTGGCT 59.602 55.0 0.0 0.0 0.0 4.75 F
1564 2484 0.104356 TGGAGGACAAGTACCCCCAA 60.104 55.0 0.0 0.0 0.0 4.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2931 3884 2.489938 AAAGAGGATGCGGCAGTTAA 57.510 45.0 9.25 0.0 0.0 2.01 R
3255 4209 0.898789 ACGGGACAGGACACAGGTAG 60.899 60.0 0.00 0.0 0.0 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 7.333174 AGTGTTGTTGGGTTTCTTAAAAACATG 59.667 33.333 12.29 0.00 33.49 3.21
34 38 6.342111 TGTTGGGTTTCTTAAAAACATGACC 58.658 36.000 0.00 0.00 33.49 4.02
478 522 4.060205 CCTGGTGGCATTTTCTTTTTCTG 58.940 43.478 0.00 0.00 0.00 3.02
480 524 3.708631 TGGTGGCATTTTCTTTTTCTGGA 59.291 39.130 0.00 0.00 0.00 3.86
488 532 5.789643 TTTTCTTTTTCTGGATGGTGGAG 57.210 39.130 0.00 0.00 0.00 3.86
495 539 2.044946 GGATGGTGGAGGGTGCAC 60.045 66.667 8.80 8.80 38.03 4.57
506 559 4.521256 GTGGAGGGTGCACTATGTTTTTAA 59.479 41.667 17.98 0.00 35.71 1.52
616 670 7.524717 TTGAGGAGTTTCAAAATTAGGGAAG 57.475 36.000 0.00 0.00 34.32 3.46
654 709 9.479549 AAAATAAATGAATGGGAGAGCTTCTTA 57.520 29.630 0.00 0.00 0.00 2.10
664 720 5.940470 TGGGAGAGCTTCTTAAGAAATTGTC 59.060 40.000 18.25 15.31 33.07 3.18
670 726 4.142665 GCTTCTTAAGAAATTGTCGACCCC 60.143 45.833 18.25 0.00 33.07 4.95
798 879 4.014406 GACCCGGTCAAAATCAGGTAATT 58.986 43.478 13.05 0.00 32.09 1.40
800 881 4.263771 ACCCGGTCAAAATCAGGTAATTCT 60.264 41.667 0.00 0.00 0.00 2.40
827 909 7.687941 TTTAATTGGAGACCTCAATTGAGTC 57.312 36.000 29.03 24.51 42.59 3.36
830 918 2.834549 TGGAGACCTCAATTGAGTCCTC 59.165 50.000 29.55 29.00 40.48 3.71
932 1727 2.430382 TTCCGTGTCCCACTTCGCTC 62.430 60.000 0.00 0.00 31.34 5.03
971 1779 0.398318 GGTCCACTTCTTCACTGGCT 59.602 55.000 0.00 0.00 0.00 4.75
986 1794 4.752879 GCTGCCGGCTACGAACCA 62.753 66.667 29.70 2.78 44.60 3.67
988 1796 2.992689 TGCCGGCTACGAACCAGA 60.993 61.111 29.70 0.00 44.60 3.86
991 1799 2.579787 CGGCTACGAACCAGAGCG 60.580 66.667 0.00 0.00 44.60 5.03
992 1800 2.882876 GGCTACGAACCAGAGCGA 59.117 61.111 0.00 0.00 37.07 4.93
996 1828 0.524392 CTACGAACCAGAGCGAGCTG 60.524 60.000 0.84 0.00 35.66 4.24
1138 1982 1.323412 CCCTATCTGGTCTCACTCCG 58.677 60.000 0.00 0.00 0.00 4.63
1159 2003 2.931320 GCCCTCGTCGTTTCTCTGATTT 60.931 50.000 0.00 0.00 0.00 2.17
1165 2009 3.421826 CGTCGTTTCTCTGATTTCGTTGG 60.422 47.826 0.00 0.00 0.00 3.77
1210 2073 6.013842 TGCAGGTATCGATTATGAGTACAG 57.986 41.667 1.71 0.00 0.00 2.74
1253 2116 0.324368 AGCAGTCTGATCCCGGTACA 60.324 55.000 3.32 0.00 0.00 2.90
1284 2161 2.676463 GCTTTCTACCTGTCCTCTGCAG 60.676 54.545 7.63 7.63 0.00 4.41
1304 2181 3.011119 AGTTGCGTCAGTTGTTTGGTAA 58.989 40.909 0.00 0.00 0.00 2.85
1305 2182 3.440872 AGTTGCGTCAGTTGTTTGGTAAA 59.559 39.130 0.00 0.00 0.00 2.01
1306 2183 4.082679 AGTTGCGTCAGTTGTTTGGTAAAA 60.083 37.500 0.00 0.00 0.00 1.52
1465 2380 0.116342 TCACTCTTGCCCAGGGTCTA 59.884 55.000 7.55 0.00 31.53 2.59
1472 2387 3.589735 TCTTGCCCAGGGTCTACAAATTA 59.410 43.478 7.55 0.00 0.00 1.40
1500 2419 1.674441 CTCCTACGCAGTACCATTCGA 59.326 52.381 0.00 0.00 45.11 3.71
1535 2455 1.563111 CACTTGCTTTGTTGTGGCTG 58.437 50.000 0.00 0.00 0.00 4.85
1564 2484 0.104356 TGGAGGACAAGTACCCCCAA 60.104 55.000 0.00 0.00 0.00 4.12
1650 2571 2.472695 TTACTCACCATGGTCAGCAC 57.527 50.000 16.80 0.00 0.00 4.40
1667 2588 5.344128 GTCAGCACAAGTATTTCATGCTTTG 59.656 40.000 4.08 0.00 44.01 2.77
1668 2589 4.090930 CAGCACAAGTATTTCATGCTTTGC 59.909 41.667 4.08 10.67 44.01 3.68
1671 2592 5.706916 CACAAGTATTTCATGCTTTGCTCT 58.293 37.500 0.00 0.00 32.71 4.09
1773 2723 7.654923 ACAGTTTGCTTACAGGTTAGTTAGTAC 59.345 37.037 0.00 0.00 0.00 2.73
1774 2724 7.871463 CAGTTTGCTTACAGGTTAGTTAGTACT 59.129 37.037 0.00 0.00 38.44 2.73
1775 2725 9.082313 AGTTTGCTTACAGGTTAGTTAGTACTA 57.918 33.333 0.00 0.00 35.78 1.82
2450 3402 7.038799 AGCATTACTTCCATCCAGAAAATTTGT 60.039 33.333 0.00 0.00 0.00 2.83
2452 3404 9.143631 CATTACTTCCATCCAGAAAATTTGTTC 57.856 33.333 0.00 0.00 0.00 3.18
2702 3654 6.155136 GGTTCGTATGCTACCCTACTATTTC 58.845 44.000 0.00 0.00 0.00 2.17
2703 3655 6.015603 GGTTCGTATGCTACCCTACTATTTCT 60.016 42.308 0.00 0.00 0.00 2.52
2705 3657 6.978338 TCGTATGCTACCCTACTATTTCTTG 58.022 40.000 0.00 0.00 0.00 3.02
2914 3867 2.344025 CAAGTGTAAACTACCCCGAGC 58.656 52.381 0.00 0.00 0.00 5.03
2931 3884 2.018515 GAGCCGACTCAGCTAAGTAGT 58.981 52.381 0.00 0.00 41.75 2.73
3011 3965 2.063266 TGCGGTGACTCGTTATCAAAC 58.937 47.619 0.00 0.00 0.00 2.93
3138 4092 4.598894 CCTCGCGAGGCTCCATGG 62.599 72.222 39.83 17.23 42.44 3.66
3255 4209 6.281405 TCAGTAGTTCTCACTCCTTTGTTTC 58.719 40.000 0.00 0.00 34.06 2.78
3309 4275 7.499232 ACTCTGTAACAATAAGCACAGAACTTT 59.501 33.333 4.96 0.00 44.89 2.66
3381 4353 9.495754 GAAATAATTGTGATCACTAGTCTTTGC 57.504 33.333 25.55 10.51 0.00 3.68
3388 4368 7.559486 TGTGATCACTAGTCTTTGCATATCTT 58.441 34.615 25.55 0.00 0.00 2.40
3440 4420 1.434555 TGAAACATCGGTGGCTTACG 58.565 50.000 0.00 0.00 0.00 3.18
3659 4702 1.134995 CGACATTCCTCTGTAGCTGCA 60.135 52.381 3.90 3.90 0.00 4.41
3741 8094 8.898983 TTTTTGGTGTTTACGTTTTTAGAGAG 57.101 30.769 0.00 0.00 0.00 3.20
3742 8095 7.846644 TTTGGTGTTTACGTTTTTAGAGAGA 57.153 32.000 0.00 0.00 0.00 3.10
3743 8096 7.846644 TTGGTGTTTACGTTTTTAGAGAGAA 57.153 32.000 0.00 0.00 0.00 2.87
3744 8097 8.441312 TTGGTGTTTACGTTTTTAGAGAGAAT 57.559 30.769 0.00 0.00 0.00 2.40
3745 8098 9.545105 TTGGTGTTTACGTTTTTAGAGAGAATA 57.455 29.630 0.00 0.00 0.00 1.75
3746 8099 9.199982 TGGTGTTTACGTTTTTAGAGAGAATAG 57.800 33.333 0.00 0.00 0.00 1.73
3747 8100 9.415544 GGTGTTTACGTTTTTAGAGAGAATAGA 57.584 33.333 0.00 0.00 0.00 1.98
3749 8102 9.635520 TGTTTACGTTTTTAGAGAGAATAGAGG 57.364 33.333 0.00 0.00 0.00 3.69
3750 8103 9.085250 GTTTACGTTTTTAGAGAGAATAGAGGG 57.915 37.037 0.00 0.00 0.00 4.30
3751 8104 6.854091 ACGTTTTTAGAGAGAATAGAGGGT 57.146 37.500 0.00 0.00 0.00 4.34
3752 8105 7.242322 ACGTTTTTAGAGAGAATAGAGGGTT 57.758 36.000 0.00 0.00 0.00 4.11
3753 8106 7.321908 ACGTTTTTAGAGAGAATAGAGGGTTC 58.678 38.462 0.00 0.00 0.00 3.62
3754 8107 6.757478 CGTTTTTAGAGAGAATAGAGGGTTCC 59.243 42.308 0.00 0.00 0.00 3.62
3755 8108 6.466885 TTTTAGAGAGAATAGAGGGTTCCG 57.533 41.667 0.00 0.00 0.00 4.30
3756 8109 2.312390 AGAGAGAATAGAGGGTTCCGC 58.688 52.381 0.00 0.00 0.00 5.54
3757 8110 2.091555 AGAGAGAATAGAGGGTTCCGCT 60.092 50.000 0.00 0.00 37.45 5.52
3758 8111 2.696187 GAGAGAATAGAGGGTTCCGCTT 59.304 50.000 0.00 0.00 34.91 4.68
3759 8112 2.432510 AGAGAATAGAGGGTTCCGCTTG 59.567 50.000 0.00 0.00 34.91 4.01
3760 8113 2.431057 GAGAATAGAGGGTTCCGCTTGA 59.569 50.000 0.00 0.00 34.91 3.02
3761 8114 2.838202 AGAATAGAGGGTTCCGCTTGAA 59.162 45.455 0.00 0.00 34.91 2.69
3762 8115 3.456277 AGAATAGAGGGTTCCGCTTGAAT 59.544 43.478 0.00 0.00 34.91 2.57
3763 8116 2.981859 TAGAGGGTTCCGCTTGAATC 57.018 50.000 0.00 0.00 34.91 2.52
3765 8118 3.497879 GGGTTCCGCTTGAATCCG 58.502 61.111 0.00 0.00 44.21 4.18
3766 8119 1.376812 GGGTTCCGCTTGAATCCGT 60.377 57.895 0.00 0.00 44.21 4.69
3767 8120 0.108041 GGGTTCCGCTTGAATCCGTA 60.108 55.000 0.00 0.00 44.21 4.02
3768 8121 1.004595 GGTTCCGCTTGAATCCGTAC 58.995 55.000 0.00 0.00 34.90 3.67
3769 8122 0.643820 GTTCCGCTTGAATCCGTACG 59.356 55.000 8.69 8.69 34.90 3.67
3770 8123 0.244450 TTCCGCTTGAATCCGTACGT 59.756 50.000 15.21 0.00 0.00 3.57
3771 8124 0.457166 TCCGCTTGAATCCGTACGTG 60.457 55.000 15.21 5.96 0.00 4.49
3772 8125 1.418342 CCGCTTGAATCCGTACGTGG 61.418 60.000 15.21 0.00 0.00 4.94
3773 8126 0.734942 CGCTTGAATCCGTACGTGGT 60.735 55.000 15.21 0.00 0.00 4.16
3774 8127 0.997196 GCTTGAATCCGTACGTGGTC 59.003 55.000 15.21 8.31 0.00 4.02
3775 8128 1.636988 CTTGAATCCGTACGTGGTCC 58.363 55.000 15.21 0.00 0.00 4.46
3776 8129 1.203994 CTTGAATCCGTACGTGGTCCT 59.796 52.381 15.21 0.00 0.00 3.85
3777 8130 1.259609 TGAATCCGTACGTGGTCCTT 58.740 50.000 15.21 0.00 0.00 3.36
3778 8131 2.445427 TGAATCCGTACGTGGTCCTTA 58.555 47.619 15.21 0.00 0.00 2.69
3779 8132 2.164219 TGAATCCGTACGTGGTCCTTAC 59.836 50.000 15.21 0.00 0.00 2.34
3780 8133 2.134789 ATCCGTACGTGGTCCTTACT 57.865 50.000 15.21 0.00 0.00 2.24
3781 8134 1.453155 TCCGTACGTGGTCCTTACTC 58.547 55.000 15.21 0.00 0.00 2.59
3782 8135 1.167851 CCGTACGTGGTCCTTACTCA 58.832 55.000 15.21 0.00 0.00 3.41
3783 8136 1.747355 CCGTACGTGGTCCTTACTCAT 59.253 52.381 15.21 0.00 0.00 2.90
3784 8137 2.165030 CCGTACGTGGTCCTTACTCATT 59.835 50.000 15.21 0.00 0.00 2.57
3785 8138 3.432782 CGTACGTGGTCCTTACTCATTC 58.567 50.000 7.22 0.00 0.00 2.67
3786 8139 3.733077 CGTACGTGGTCCTTACTCATTCC 60.733 52.174 7.22 0.00 0.00 3.01
3787 8140 2.537143 ACGTGGTCCTTACTCATTCCT 58.463 47.619 0.00 0.00 0.00 3.36
3788 8141 2.233922 ACGTGGTCCTTACTCATTCCTG 59.766 50.000 0.00 0.00 0.00 3.86
3789 8142 2.633488 GTGGTCCTTACTCATTCCTGC 58.367 52.381 0.00 0.00 0.00 4.85
3790 8143 1.207089 TGGTCCTTACTCATTCCTGCG 59.793 52.381 0.00 0.00 0.00 5.18
3791 8144 1.473434 GGTCCTTACTCATTCCTGCGG 60.473 57.143 0.00 0.00 0.00 5.69
3792 8145 1.480954 GTCCTTACTCATTCCTGCGGA 59.519 52.381 0.00 0.00 0.00 5.54
3793 8146 1.480954 TCCTTACTCATTCCTGCGGAC 59.519 52.381 0.00 0.00 0.00 4.79
3794 8147 1.482593 CCTTACTCATTCCTGCGGACT 59.517 52.381 0.00 0.00 0.00 3.85
3795 8148 2.482142 CCTTACTCATTCCTGCGGACTC 60.482 54.545 0.00 0.00 0.00 3.36
3796 8149 1.112113 TACTCATTCCTGCGGACTCC 58.888 55.000 0.00 0.00 0.00 3.85
3797 8150 0.904865 ACTCATTCCTGCGGACTCCA 60.905 55.000 0.00 0.00 0.00 3.86
3798 8151 0.179089 CTCATTCCTGCGGACTCCAG 60.179 60.000 0.00 0.00 0.00 3.86
3803 8156 3.382111 CTGCGGACTCCAGGAAGT 58.618 61.111 0.00 0.00 0.00 3.01
3804 8157 1.216710 CTGCGGACTCCAGGAAGTC 59.783 63.158 9.48 9.48 44.08 3.01
3805 8158 1.228894 TGCGGACTCCAGGAAGTCT 60.229 57.895 14.96 0.00 44.21 3.24
3806 8159 0.832135 TGCGGACTCCAGGAAGTCTT 60.832 55.000 14.96 0.00 44.21 3.01
3807 8160 0.321996 GCGGACTCCAGGAAGTCTTT 59.678 55.000 14.96 0.00 44.21 2.52
3808 8161 1.941668 GCGGACTCCAGGAAGTCTTTG 60.942 57.143 14.96 9.06 44.21 2.77
3809 8162 1.338200 CGGACTCCAGGAAGTCTTTGG 60.338 57.143 14.96 0.00 44.21 3.28
3810 8163 1.700186 GGACTCCAGGAAGTCTTTGGT 59.300 52.381 14.96 0.00 44.21 3.67
3811 8164 2.106684 GGACTCCAGGAAGTCTTTGGTT 59.893 50.000 14.96 0.00 44.21 3.67
3812 8165 3.326880 GGACTCCAGGAAGTCTTTGGTTA 59.673 47.826 14.96 0.00 44.21 2.85
3813 8166 4.316645 GACTCCAGGAAGTCTTTGGTTAC 58.683 47.826 10.34 0.00 42.01 2.50
3814 8167 3.974642 ACTCCAGGAAGTCTTTGGTTACT 59.025 43.478 3.70 0.00 33.65 2.24
3815 8168 4.202367 ACTCCAGGAAGTCTTTGGTTACTG 60.202 45.833 3.70 0.00 33.65 2.74
3816 8169 3.072476 TCCAGGAAGTCTTTGGTTACTGG 59.928 47.826 6.97 6.97 44.20 4.00
3817 8170 3.412386 CAGGAAGTCTTTGGTTACTGGG 58.588 50.000 0.00 0.00 0.00 4.45
3818 8171 3.053826 AGGAAGTCTTTGGTTACTGGGT 58.946 45.455 0.00 0.00 0.00 4.51
3819 8172 3.146847 GGAAGTCTTTGGTTACTGGGTG 58.853 50.000 0.00 0.00 0.00 4.61
3820 8173 2.271944 AGTCTTTGGTTACTGGGTGC 57.728 50.000 0.00 0.00 0.00 5.01
3821 8174 1.493022 AGTCTTTGGTTACTGGGTGCA 59.507 47.619 0.00 0.00 0.00 4.57
3822 8175 2.092103 AGTCTTTGGTTACTGGGTGCAA 60.092 45.455 0.00 0.00 0.00 4.08
3823 8176 2.034179 GTCTTTGGTTACTGGGTGCAAC 59.966 50.000 0.00 0.00 0.00 4.17
3836 8189 0.819582 GTGCAACCAATGGGAGATGG 59.180 55.000 3.55 0.00 42.60 3.51
3842 8195 1.972872 CCAATGGGAGATGGTAGCAC 58.027 55.000 0.00 0.00 35.59 4.40
3843 8196 1.586422 CAATGGGAGATGGTAGCACG 58.414 55.000 0.00 0.00 0.00 5.34
3844 8197 0.469917 AATGGGAGATGGTAGCACGG 59.530 55.000 0.00 0.00 0.00 4.94
3845 8198 1.410850 ATGGGAGATGGTAGCACGGG 61.411 60.000 0.00 0.00 0.00 5.28
3846 8199 2.808206 GGGAGATGGTAGCACGGGG 61.808 68.421 0.00 0.00 0.00 5.73
3847 8200 2.064581 GGAGATGGTAGCACGGGGT 61.065 63.158 0.00 0.00 0.00 4.95
3848 8201 0.757935 GGAGATGGTAGCACGGGGTA 60.758 60.000 0.00 0.00 0.00 3.69
3849 8202 1.339097 GAGATGGTAGCACGGGGTAT 58.661 55.000 0.00 0.00 0.00 2.73
3850 8203 2.522185 GAGATGGTAGCACGGGGTATA 58.478 52.381 0.00 0.00 0.00 1.47
3851 8204 3.097614 GAGATGGTAGCACGGGGTATAT 58.902 50.000 0.00 0.00 0.00 0.86
3852 8205 3.514309 GAGATGGTAGCACGGGGTATATT 59.486 47.826 0.00 0.00 0.00 1.28
3853 8206 3.514309 AGATGGTAGCACGGGGTATATTC 59.486 47.826 0.00 0.00 0.00 1.75
3854 8207 2.680251 TGGTAGCACGGGGTATATTCA 58.320 47.619 0.00 0.00 0.00 2.57
3855 8208 3.039743 TGGTAGCACGGGGTATATTCAA 58.960 45.455 0.00 0.00 0.00 2.69
3856 8209 3.181463 TGGTAGCACGGGGTATATTCAAC 60.181 47.826 0.00 0.00 0.00 3.18
3857 8210 2.632987 AGCACGGGGTATATTCAACC 57.367 50.000 0.00 0.00 36.19 3.77
3861 8214 2.625695 CGGGGTATATTCAACCGGTT 57.374 50.000 15.86 15.86 40.79 4.44
3862 8215 2.486918 CGGGGTATATTCAACCGGTTC 58.513 52.381 19.24 3.86 40.79 3.62
3863 8216 2.486918 GGGGTATATTCAACCGGTTCG 58.513 52.381 19.24 13.41 37.93 3.95
3877 8230 4.155733 TTCGGATGGCGGTCGCAT 62.156 61.111 17.21 8.55 44.11 4.73
3878 8231 2.787567 TTCGGATGGCGGTCGCATA 61.788 57.895 17.21 5.89 44.11 3.14
3879 8232 2.279851 CGGATGGCGGTCGCATAA 60.280 61.111 17.21 2.61 44.11 1.90
3880 8233 2.594962 CGGATGGCGGTCGCATAAC 61.595 63.158 17.21 4.44 44.11 1.89
3881 8234 1.522806 GGATGGCGGTCGCATAACA 60.523 57.895 17.21 6.12 44.11 2.41
3882 8235 1.498865 GGATGGCGGTCGCATAACAG 61.499 60.000 17.21 0.00 44.11 3.16
3883 8236 1.498865 GATGGCGGTCGCATAACAGG 61.499 60.000 17.21 0.00 44.11 4.00
3884 8237 1.966901 ATGGCGGTCGCATAACAGGA 61.967 55.000 17.21 0.00 44.11 3.86
3885 8238 1.227556 GGCGGTCGCATAACAGGAT 60.228 57.895 17.21 0.00 44.11 3.24
3886 8239 0.032952 GGCGGTCGCATAACAGGATA 59.967 55.000 17.21 0.00 44.11 2.59
3887 8240 1.419374 GCGGTCGCATAACAGGATAG 58.581 55.000 10.67 0.00 41.49 2.08
3888 8241 1.935300 GCGGTCGCATAACAGGATAGG 60.935 57.143 10.67 0.00 41.49 2.57
3889 8242 1.611977 CGGTCGCATAACAGGATAGGA 59.388 52.381 0.00 0.00 0.00 2.94
3890 8243 2.351835 CGGTCGCATAACAGGATAGGAG 60.352 54.545 0.00 0.00 0.00 3.69
3891 8244 2.628657 GGTCGCATAACAGGATAGGAGT 59.371 50.000 0.00 0.00 0.00 3.85
3892 8245 3.305471 GGTCGCATAACAGGATAGGAGTC 60.305 52.174 0.00 0.00 0.00 3.36
3893 8246 3.570550 GTCGCATAACAGGATAGGAGTCT 59.429 47.826 0.00 0.00 0.00 3.24
3894 8247 4.760715 GTCGCATAACAGGATAGGAGTCTA 59.239 45.833 0.00 0.00 0.00 2.59
3895 8248 5.004448 TCGCATAACAGGATAGGAGTCTAG 58.996 45.833 0.00 0.00 0.00 2.43
3896 8249 4.156922 CGCATAACAGGATAGGAGTCTAGG 59.843 50.000 0.00 0.00 0.00 3.02
3897 8250 4.464597 GCATAACAGGATAGGAGTCTAGGG 59.535 50.000 0.00 0.00 0.00 3.53
3898 8251 5.752332 GCATAACAGGATAGGAGTCTAGGGA 60.752 48.000 0.00 0.00 0.00 4.20
3899 8252 4.463050 AACAGGATAGGAGTCTAGGGAG 57.537 50.000 0.00 0.00 0.00 4.30
3900 8253 2.109304 ACAGGATAGGAGTCTAGGGAGC 59.891 54.545 0.00 0.00 0.00 4.70
3901 8254 2.378547 CAGGATAGGAGTCTAGGGAGCT 59.621 54.545 0.00 0.00 0.00 4.09
3902 8255 3.068237 AGGATAGGAGTCTAGGGAGCTT 58.932 50.000 0.00 0.00 0.00 3.74
3903 8256 4.043561 CAGGATAGGAGTCTAGGGAGCTTA 59.956 50.000 0.00 0.00 0.00 3.09
3904 8257 4.861454 AGGATAGGAGTCTAGGGAGCTTAT 59.139 45.833 0.00 0.00 0.00 1.73
3905 8258 5.044402 AGGATAGGAGTCTAGGGAGCTTATC 60.044 48.000 0.00 0.00 0.00 1.75
3934 8287 7.571080 TTTTTGACTTACCGGTTGTATTTCT 57.429 32.000 15.04 0.00 0.00 2.52
3935 8288 6.548441 TTTGACTTACCGGTTGTATTTCTG 57.452 37.500 15.04 0.00 0.00 3.02
3936 8289 5.471556 TGACTTACCGGTTGTATTTCTGA 57.528 39.130 15.04 0.00 0.00 3.27
3937 8290 5.475719 TGACTTACCGGTTGTATTTCTGAG 58.524 41.667 15.04 0.00 0.00 3.35
3938 8291 4.251268 ACTTACCGGTTGTATTTCTGAGC 58.749 43.478 15.04 0.00 0.00 4.26
3939 8292 2.851263 ACCGGTTGTATTTCTGAGCA 57.149 45.000 0.00 0.00 0.00 4.26
3940 8293 3.350219 ACCGGTTGTATTTCTGAGCAT 57.650 42.857 0.00 0.00 0.00 3.79
3941 8294 3.009723 ACCGGTTGTATTTCTGAGCATG 58.990 45.455 0.00 0.00 0.00 4.06
3942 8295 3.009723 CCGGTTGTATTTCTGAGCATGT 58.990 45.455 0.00 0.00 0.00 3.21
3943 8296 4.188462 CCGGTTGTATTTCTGAGCATGTA 58.812 43.478 0.00 0.00 0.00 2.29
3944 8297 4.034048 CCGGTTGTATTTCTGAGCATGTAC 59.966 45.833 0.00 0.00 0.00 2.90
3945 8298 4.870426 CGGTTGTATTTCTGAGCATGTACT 59.130 41.667 0.00 0.00 0.00 2.73
3946 8299 5.351465 CGGTTGTATTTCTGAGCATGTACTT 59.649 40.000 0.00 0.00 0.00 2.24
3947 8300 6.128282 CGGTTGTATTTCTGAGCATGTACTTT 60.128 38.462 0.00 0.00 0.00 2.66
3948 8301 7.573096 CGGTTGTATTTCTGAGCATGTACTTTT 60.573 37.037 0.00 0.00 0.00 2.27
3949 8302 8.726988 GGTTGTATTTCTGAGCATGTACTTTTA 58.273 33.333 0.00 0.00 0.00 1.52
3958 8311 9.897744 TCTGAGCATGTACTTTTATTTTCTTTG 57.102 29.630 0.00 0.00 0.00 2.77
3959 8312 9.683069 CTGAGCATGTACTTTTATTTTCTTTGT 57.317 29.630 0.00 0.00 0.00 2.83
3969 8322 8.387354 ACTTTTATTTTCTTTGTTTTTGCTCCG 58.613 29.630 0.00 0.00 0.00 4.63
3970 8323 4.794248 ATTTTCTTTGTTTTTGCTCCGC 57.206 36.364 0.00 0.00 0.00 5.54
3971 8324 3.518634 TTTCTTTGTTTTTGCTCCGCT 57.481 38.095 0.00 0.00 0.00 5.52
3972 8325 3.518634 TTCTTTGTTTTTGCTCCGCTT 57.481 38.095 0.00 0.00 0.00 4.68
3973 8326 2.808244 TCTTTGTTTTTGCTCCGCTTG 58.192 42.857 0.00 0.00 0.00 4.01
3974 8327 1.258720 CTTTGTTTTTGCTCCGCTTGC 59.741 47.619 0.00 0.00 0.00 4.01
3975 8328 0.869454 TTGTTTTTGCTCCGCTTGCG 60.869 50.000 8.14 8.14 0.00 4.85
3976 8329 1.008995 GTTTTTGCTCCGCTTGCGA 60.009 52.632 16.99 2.09 0.00 5.10
3977 8330 0.998727 GTTTTTGCTCCGCTTGCGAG 60.999 55.000 16.99 12.25 0.00 5.03
3983 8336 3.569916 CTCCGCTTGCGAGCTATAA 57.430 52.632 23.42 5.45 46.96 0.98
3984 8337 2.071688 CTCCGCTTGCGAGCTATAAT 57.928 50.000 23.42 0.00 46.96 1.28
3985 8338 3.217599 CTCCGCTTGCGAGCTATAATA 57.782 47.619 23.42 2.05 46.96 0.98
3986 8339 2.917971 CTCCGCTTGCGAGCTATAATAC 59.082 50.000 23.42 0.00 46.96 1.89
3987 8340 1.993370 CCGCTTGCGAGCTATAATACC 59.007 52.381 23.42 0.00 46.96 2.73
3988 8341 2.352814 CCGCTTGCGAGCTATAATACCT 60.353 50.000 23.42 0.00 46.96 3.08
3989 8342 3.318017 CGCTTGCGAGCTATAATACCTT 58.682 45.455 23.42 0.00 46.96 3.50
3990 8343 3.365220 CGCTTGCGAGCTATAATACCTTC 59.635 47.826 23.42 0.00 46.96 3.46
3991 8344 4.307432 GCTTGCGAGCTATAATACCTTCA 58.693 43.478 19.25 0.00 45.65 3.02
3992 8345 4.932200 GCTTGCGAGCTATAATACCTTCAT 59.068 41.667 19.25 0.00 45.65 2.57
3993 8346 5.163913 GCTTGCGAGCTATAATACCTTCATG 60.164 44.000 19.25 0.00 45.65 3.07
3994 8347 5.722021 TGCGAGCTATAATACCTTCATGA 57.278 39.130 0.00 0.00 0.00 3.07
3995 8348 5.470368 TGCGAGCTATAATACCTTCATGAC 58.530 41.667 0.00 0.00 0.00 3.06
3996 8349 5.243954 TGCGAGCTATAATACCTTCATGACT 59.756 40.000 0.00 0.00 0.00 3.41
3997 8350 6.159988 GCGAGCTATAATACCTTCATGACTT 58.840 40.000 0.00 0.00 0.00 3.01
3998 8351 6.647067 GCGAGCTATAATACCTTCATGACTTT 59.353 38.462 0.00 0.00 0.00 2.66
3999 8352 7.359598 GCGAGCTATAATACCTTCATGACTTTG 60.360 40.741 0.00 0.00 0.00 2.77
4000 8353 7.116948 CGAGCTATAATACCTTCATGACTTTGG 59.883 40.741 0.00 0.00 0.00 3.28
4001 8354 7.227156 AGCTATAATACCTTCATGACTTTGGG 58.773 38.462 0.00 0.00 0.00 4.12
4002 8355 7.072454 AGCTATAATACCTTCATGACTTTGGGA 59.928 37.037 0.00 0.00 0.00 4.37
4003 8356 7.885399 GCTATAATACCTTCATGACTTTGGGAT 59.115 37.037 0.00 0.00 0.00 3.85
4004 8357 9.799106 CTATAATACCTTCATGACTTTGGGATT 57.201 33.333 14.37 14.37 35.67 3.01
4005 8358 8.697507 ATAATACCTTCATGACTTTGGGATTC 57.302 34.615 13.70 0.00 33.74 2.52
4006 8359 4.664688 ACCTTCATGACTTTGGGATTCT 57.335 40.909 0.00 0.00 0.00 2.40
4007 8360 5.003096 ACCTTCATGACTTTGGGATTCTT 57.997 39.130 0.00 0.00 0.00 2.52
4008 8361 5.012893 ACCTTCATGACTTTGGGATTCTTC 58.987 41.667 0.00 0.00 0.00 2.87
4009 8362 4.095483 CCTTCATGACTTTGGGATTCTTCG 59.905 45.833 0.00 0.00 0.00 3.79
4010 8363 4.551702 TCATGACTTTGGGATTCTTCGA 57.448 40.909 0.00 0.00 0.00 3.71
4011 8364 4.507710 TCATGACTTTGGGATTCTTCGAG 58.492 43.478 0.00 0.00 0.00 4.04
4012 8365 4.222810 TCATGACTTTGGGATTCTTCGAGA 59.777 41.667 0.00 0.00 0.00 4.04
4013 8366 3.926616 TGACTTTGGGATTCTTCGAGAC 58.073 45.455 0.00 0.00 0.00 3.36
4014 8367 3.578716 TGACTTTGGGATTCTTCGAGACT 59.421 43.478 0.00 0.00 0.00 3.24
4015 8368 4.040461 TGACTTTGGGATTCTTCGAGACTT 59.960 41.667 0.00 0.00 0.00 3.01
4016 8369 4.570930 ACTTTGGGATTCTTCGAGACTTC 58.429 43.478 0.00 0.00 0.00 3.01
4017 8370 4.284746 ACTTTGGGATTCTTCGAGACTTCT 59.715 41.667 0.00 0.00 0.00 2.85
4018 8371 4.891992 TTGGGATTCTTCGAGACTTCTT 57.108 40.909 0.00 0.00 0.00 2.52
4019 8372 5.995565 TTGGGATTCTTCGAGACTTCTTA 57.004 39.130 0.00 0.00 0.00 2.10
4020 8373 5.995565 TGGGATTCTTCGAGACTTCTTAA 57.004 39.130 0.00 0.00 0.00 1.85
4021 8374 6.546428 TGGGATTCTTCGAGACTTCTTAAT 57.454 37.500 0.00 0.00 0.00 1.40
4022 8375 7.655521 TGGGATTCTTCGAGACTTCTTAATA 57.344 36.000 0.00 0.00 0.00 0.98
4023 8376 8.074613 TGGGATTCTTCGAGACTTCTTAATAA 57.925 34.615 0.00 0.00 0.00 1.40
4024 8377 8.198109 TGGGATTCTTCGAGACTTCTTAATAAG 58.802 37.037 0.00 0.00 0.00 1.73
4025 8378 8.414778 GGGATTCTTCGAGACTTCTTAATAAGA 58.585 37.037 7.53 0.00 35.26 2.10
4026 8379 9.974980 GGATTCTTCGAGACTTCTTAATAAGAT 57.025 33.333 3.28 0.00 37.38 2.40
4028 8381 9.757227 ATTCTTCGAGACTTCTTAATAAGATGG 57.243 33.333 16.83 10.07 37.38 3.51
4029 8382 7.203910 TCTTCGAGACTTCTTAATAAGATGGC 58.796 38.462 16.83 14.74 40.14 4.40
4033 8386 5.994250 AGACTTCTTAATAAGATGGCTGCA 58.006 37.500 19.62 0.00 46.09 4.41
4034 8387 6.599445 AGACTTCTTAATAAGATGGCTGCAT 58.401 36.000 19.62 0.67 46.09 3.96
4035 8388 6.485984 AGACTTCTTAATAAGATGGCTGCATG 59.514 38.462 19.62 0.00 46.09 4.06
4036 8389 5.009410 ACTTCTTAATAAGATGGCTGCATGC 59.991 40.000 11.82 11.82 37.38 4.06
4037 8390 4.463070 TCTTAATAAGATGGCTGCATGCA 58.537 39.130 21.29 21.29 36.54 3.96
4038 8391 5.074804 TCTTAATAAGATGGCTGCATGCAT 58.925 37.500 22.97 5.92 36.54 3.96
4039 8392 3.936372 AATAAGATGGCTGCATGCATC 57.064 42.857 22.97 17.75 45.15 3.91
4040 8393 2.351706 TAAGATGGCTGCATGCATCA 57.648 45.000 22.97 21.78 45.15 3.07
4041 8394 1.704641 AAGATGGCTGCATGCATCAT 58.295 45.000 26.51 26.51 45.15 2.45
4042 8395 1.704641 AGATGGCTGCATGCATCATT 58.295 45.000 26.74 17.93 45.15 2.57
4043 8396 2.871453 AGATGGCTGCATGCATCATTA 58.129 42.857 26.74 13.79 45.15 1.90
4044 8397 3.431415 AGATGGCTGCATGCATCATTAT 58.569 40.909 26.74 19.38 45.15 1.28
4045 8398 3.193479 AGATGGCTGCATGCATCATTATG 59.807 43.478 26.74 14.81 45.15 1.90
4046 8399 2.588620 TGGCTGCATGCATCATTATGA 58.411 42.857 22.97 0.00 45.15 2.15
4047 8400 3.161866 TGGCTGCATGCATCATTATGAT 58.838 40.909 22.97 1.25 45.15 2.45
4057 8410 2.174363 TCATTATGATGCAGAGGCCG 57.826 50.000 0.00 0.00 40.13 6.13
4058 8411 1.162698 CATTATGATGCAGAGGCCGG 58.837 55.000 0.00 0.00 40.13 6.13
4059 8412 0.037303 ATTATGATGCAGAGGCCGGG 59.963 55.000 2.18 0.00 40.13 5.73
4060 8413 2.055689 TTATGATGCAGAGGCCGGGG 62.056 60.000 2.18 0.00 40.13 5.73
4075 8428 3.140814 GGGGCACGCCTCCATTTC 61.141 66.667 8.20 0.00 36.10 2.17
4076 8429 3.140814 GGGCACGCCTCCATTTCC 61.141 66.667 8.20 0.00 36.10 3.13
4077 8430 2.361104 GGCACGCCTCCATTTCCA 60.361 61.111 0.00 0.00 0.00 3.53
4078 8431 1.976474 GGCACGCCTCCATTTCCAA 60.976 57.895 0.00 0.00 0.00 3.53
4079 8432 1.531739 GGCACGCCTCCATTTCCAAA 61.532 55.000 0.00 0.00 0.00 3.28
4080 8433 0.316841 GCACGCCTCCATTTCCAAAA 59.683 50.000 0.00 0.00 0.00 2.44
4081 8434 1.270041 GCACGCCTCCATTTCCAAAAA 60.270 47.619 0.00 0.00 0.00 1.94
4106 8459 5.825593 AAGAGAATAGAGGGTTGTGACAA 57.174 39.130 0.00 0.00 0.00 3.18
4112 8465 6.486993 AGAATAGAGGGTTGTGACAAAAGAAC 59.513 38.462 0.00 0.00 0.00 3.01
4119 8472 5.106442 GGTTGTGACAAAAGAACGGAAAAT 58.894 37.500 0.00 0.00 0.00 1.82
4132 8485 2.027561 ACGGAAAATACTGGCAGCTACA 60.028 45.455 15.89 0.00 0.00 2.74
4133 8486 3.206150 CGGAAAATACTGGCAGCTACAT 58.794 45.455 15.89 0.00 0.00 2.29
4143 8496 1.136305 GGCAGCTACATAGGAACGTCA 59.864 52.381 0.00 0.00 0.00 4.35
4173 8526 3.620488 AGAAAGCAAACAAGACCTGACA 58.380 40.909 0.00 0.00 0.00 3.58
4183 8536 0.935196 AGACCTGACAAAAACGTCGC 59.065 50.000 0.00 0.00 38.84 5.19
4190 8543 1.869132 GACAAAAACGTCGCTTAGGGT 59.131 47.619 0.00 0.00 0.00 4.34
4191 8544 3.059166 GACAAAAACGTCGCTTAGGGTA 58.941 45.455 0.00 0.00 0.00 3.69
4192 8545 3.667360 ACAAAAACGTCGCTTAGGGTAT 58.333 40.909 0.00 0.00 0.00 2.73
4194 8547 4.152938 ACAAAAACGTCGCTTAGGGTATTC 59.847 41.667 0.00 0.00 0.00 1.75
4200 8556 4.457257 ACGTCGCTTAGGGTATTCTATACC 59.543 45.833 7.23 7.23 36.88 2.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
332 362 7.552050 AAGACCCACCAAATCATCAAATAAA 57.448 32.000 0.00 0.00 0.00 1.40
334 364 7.552050 AAAAGACCCACCAAATCATCAAATA 57.448 32.000 0.00 0.00 0.00 1.40
415 450 1.819288 AGTACATGCAGCTACAGACGT 59.181 47.619 0.00 0.00 0.00 4.34
478 522 1.271840 TAGTGCACCCTCCACCATCC 61.272 60.000 14.63 0.00 33.75 3.51
480 524 0.548031 CATAGTGCACCCTCCACCAT 59.452 55.000 14.63 0.00 33.75 3.55
488 532 4.242475 GCCTTTAAAAACATAGTGCACCC 58.758 43.478 14.63 0.00 0.00 4.61
495 539 6.565060 GCAAAAACCGGCCTTTAAAAACATAG 60.565 38.462 0.00 0.00 0.00 2.23
506 559 1.047801 AATCAGCAAAAACCGGCCTT 58.952 45.000 0.00 0.00 0.00 4.35
593 647 6.848069 TCTTCCCTAATTTTGAAACTCCTCA 58.152 36.000 0.00 0.00 0.00 3.86
596 650 9.244292 ACTATTCTTCCCTAATTTTGAAACTCC 57.756 33.333 0.00 0.00 0.00 3.85
654 709 1.071071 TGACGGGGTCGACAATTTCTT 59.929 47.619 18.91 0.00 38.01 2.52
664 720 0.389426 ACTCGATTTTGACGGGGTCG 60.389 55.000 0.00 0.00 43.02 4.79
670 726 4.910746 ATTGAGTCACTCGATTTTGACG 57.089 40.909 1.08 0.00 45.71 4.35
798 879 9.973661 TCAATTGAGGTCTCCAATTAAAATAGA 57.026 29.630 3.38 0.00 40.91 1.98
800 881 9.753674 ACTCAATTGAGGTCTCCAATTAAAATA 57.246 29.630 33.11 0.00 46.13 1.40
825 907 5.603395 ACTAGGCTCCCTAATTTTAGAGGAC 59.397 44.000 0.00 1.26 35.49 3.85
827 909 5.743422 GCACTAGGCTCCCTAATTTTAGAGG 60.743 48.000 0.00 0.00 35.49 3.69
830 918 4.058817 CGCACTAGGCTCCCTAATTTTAG 58.941 47.826 0.00 0.00 41.67 1.85
971 1779 2.992689 TCTGGTTCGTAGCCGGCA 60.993 61.111 31.54 12.31 32.54 5.69
986 1794 2.415010 CCATACGCAGCTCGCTCT 59.585 61.111 5.63 0.00 43.23 4.09
988 1796 3.376935 AAGCCATACGCAGCTCGCT 62.377 57.895 5.63 0.00 43.23 4.93
991 1799 2.240500 CCGAAGCCATACGCAGCTC 61.241 63.158 0.00 0.00 38.74 4.09
992 1800 2.202932 CCGAAGCCATACGCAGCT 60.203 61.111 0.00 0.00 42.40 4.24
996 1828 4.884257 TCCGCCGAAGCCATACGC 62.884 66.667 0.00 0.00 34.57 4.42
999 1831 4.235762 GCCTCCGCCGAAGCCATA 62.236 66.667 0.00 0.00 34.57 2.74
1138 1982 0.173708 ATCAGAGAAACGACGAGGGC 59.826 55.000 0.00 0.00 0.00 5.19
1159 2003 5.423704 TCATAATCCAGTTTACCCAACGA 57.576 39.130 0.00 0.00 40.75 3.85
1165 2009 6.321181 TGCAGGAAATCATAATCCAGTTTACC 59.679 38.462 0.00 0.00 38.23 2.85
1284 2161 3.408288 TTACCAAACAACTGACGCAAC 57.592 42.857 0.00 0.00 0.00 4.17
1319 2216 9.787435 ACAAAGTAACATGAATTACCTAGTGAA 57.213 29.630 0.00 0.00 35.95 3.18
1329 2226 5.596361 TGTCACCCACAAAGTAACATGAATT 59.404 36.000 0.00 0.00 29.30 2.17
1330 2227 5.136828 TGTCACCCACAAAGTAACATGAAT 58.863 37.500 0.00 0.00 29.30 2.57
1331 2228 4.527944 TGTCACCCACAAAGTAACATGAA 58.472 39.130 0.00 0.00 29.30 2.57
1333 2230 4.133820 TCTGTCACCCACAAAGTAACATG 58.866 43.478 0.00 0.00 33.31 3.21
1336 2234 3.805207 ACTCTGTCACCCACAAAGTAAC 58.195 45.455 0.00 0.00 34.25 2.50
1465 2380 4.634443 GCGTAGGAGGAACACATAATTTGT 59.366 41.667 0.00 0.00 39.91 2.83
1500 2419 7.944729 AAGCAAGTGGTTGATAACTGATAAT 57.055 32.000 0.00 0.00 35.46 1.28
1532 2451 4.202245 TGTCCTCCAAATACTGTACAGC 57.798 45.455 22.90 2.45 0.00 4.40
1535 2455 6.104665 GGTACTTGTCCTCCAAATACTGTAC 58.895 44.000 0.00 0.00 36.31 2.90
1564 2484 1.416401 TCTTGAGGCAAAAGAGGACGT 59.584 47.619 0.00 0.00 0.00 4.34
1650 2571 5.946298 TGAGAGCAAAGCATGAAATACTTG 58.054 37.500 0.00 0.00 28.34 3.16
1667 2588 5.182380 ACAAAGTACTACTGAGACTGAGAGC 59.818 44.000 10.96 0.00 0.00 4.09
1668 2589 6.205853 ACACAAAGTACTACTGAGACTGAGAG 59.794 42.308 10.96 0.00 0.00 3.20
1671 2592 5.593095 ACACACAAAGTACTACTGAGACTGA 59.407 40.000 10.96 0.00 0.00 3.41
1773 2723 4.995487 GGCGGGTCAGGTAAAATAGAATAG 59.005 45.833 0.00 0.00 0.00 1.73
1774 2724 4.409574 TGGCGGGTCAGGTAAAATAGAATA 59.590 41.667 0.00 0.00 0.00 1.75
1775 2725 3.201266 TGGCGGGTCAGGTAAAATAGAAT 59.799 43.478 0.00 0.00 0.00 2.40
1820 2770 8.184192 GTGTACTTTGTGCTATGCTTTGATAAT 58.816 33.333 0.00 0.00 0.00 1.28
1921 2871 8.980481 ATTTTGTAGATTATACTTGGACCTGG 57.020 34.615 0.00 0.00 0.00 4.45
2450 3402 4.202461 ACTTGGTGAGCAGTATTTCCAGAA 60.202 41.667 0.00 0.00 0.00 3.02
2452 3404 3.679389 ACTTGGTGAGCAGTATTTCCAG 58.321 45.455 0.00 0.00 0.00 3.86
2705 3657 9.439537 GTGTTCAACAGAAGAAAATAAAGAGAC 57.560 33.333 0.00 0.00 0.00 3.36
2914 3867 5.333513 CAGTTAACTACTTAGCTGAGTCGG 58.666 45.833 15.33 11.55 41.45 4.79
2931 3884 2.489938 AAAGAGGATGCGGCAGTTAA 57.510 45.000 9.25 0.00 0.00 2.01
3011 3965 2.746904 TGAAAATGCAGTACCATGTCCG 59.253 45.455 0.00 0.00 0.00 4.79
3012 3966 3.758554 AGTGAAAATGCAGTACCATGTCC 59.241 43.478 0.00 0.00 0.00 4.02
3255 4209 0.898789 ACGGGACAGGACACAGGTAG 60.899 60.000 0.00 0.00 0.00 3.18
3309 4275 3.005472 AGCTACTTTACACTTCGTGCAGA 59.995 43.478 0.00 0.00 36.98 4.26
3339 4305 9.487790 ACAATTATTTCATTGTTTTGGTACAGG 57.512 29.630 0.00 0.00 43.54 4.00
3381 4353 9.045223 TCACGTAAATCCAGAATTCAAGATATG 57.955 33.333 8.44 3.81 0.00 1.78
3388 4368 6.312918 GCTACTTCACGTAAATCCAGAATTCA 59.687 38.462 8.44 0.00 0.00 2.57
3485 4465 2.042162 AGTAGTGGGTTCGAGTTAGGGA 59.958 50.000 0.00 0.00 0.00 4.20
3627 4670 4.054671 GAGGAATGTCGAGAAGCTTATGG 58.945 47.826 0.00 0.00 0.00 2.74
3659 4702 4.584325 TGCTACAAAAGAATGGAAAGCACT 59.416 37.500 0.00 0.00 32.99 4.40
3729 8082 6.757478 GGAACCCTCTATTCTCTCTAAAAACG 59.243 42.308 0.00 0.00 0.00 3.60
3738 8091 2.432510 CAAGCGGAACCCTCTATTCTCT 59.567 50.000 0.00 0.00 0.00 3.10
3739 8092 2.431057 TCAAGCGGAACCCTCTATTCTC 59.569 50.000 0.00 0.00 0.00 2.87
3740 8093 2.467880 TCAAGCGGAACCCTCTATTCT 58.532 47.619 0.00 0.00 0.00 2.40
3741 8094 2.981859 TCAAGCGGAACCCTCTATTC 57.018 50.000 0.00 0.00 0.00 1.75
3742 8095 3.433740 GGATTCAAGCGGAACCCTCTATT 60.434 47.826 0.00 0.00 36.10 1.73
3743 8096 2.104963 GGATTCAAGCGGAACCCTCTAT 59.895 50.000 0.00 0.00 36.10 1.98
3744 8097 1.485066 GGATTCAAGCGGAACCCTCTA 59.515 52.381 0.00 0.00 36.10 2.43
3745 8098 0.253327 GGATTCAAGCGGAACCCTCT 59.747 55.000 0.00 0.00 36.10 3.69
3746 8099 1.090052 CGGATTCAAGCGGAACCCTC 61.090 60.000 3.46 0.00 36.98 4.30
3747 8100 1.078426 CGGATTCAAGCGGAACCCT 60.078 57.895 3.46 0.00 36.98 4.34
3748 8101 0.108041 TACGGATTCAAGCGGAACCC 60.108 55.000 0.00 0.00 38.60 4.11
3749 8102 1.004595 GTACGGATTCAAGCGGAACC 58.995 55.000 0.00 0.86 38.60 3.62
3750 8103 0.643820 CGTACGGATTCAAGCGGAAC 59.356 55.000 7.57 0.00 38.60 3.62
3751 8104 0.244450 ACGTACGGATTCAAGCGGAA 59.756 50.000 21.06 0.00 40.46 4.30
3752 8105 0.457166 CACGTACGGATTCAAGCGGA 60.457 55.000 21.06 0.00 0.00 5.54
3753 8106 1.418342 CCACGTACGGATTCAAGCGG 61.418 60.000 21.06 1.80 0.00 5.52
3754 8107 0.734942 ACCACGTACGGATTCAAGCG 60.735 55.000 21.06 0.00 0.00 4.68
3755 8108 0.997196 GACCACGTACGGATTCAAGC 59.003 55.000 21.06 0.00 0.00 4.01
3756 8109 1.203994 AGGACCACGTACGGATTCAAG 59.796 52.381 21.06 2.29 0.00 3.02
3757 8110 1.259609 AGGACCACGTACGGATTCAA 58.740 50.000 21.06 0.00 0.00 2.69
3758 8111 1.259609 AAGGACCACGTACGGATTCA 58.740 50.000 21.06 0.00 0.00 2.57
3759 8112 2.424956 AGTAAGGACCACGTACGGATTC 59.575 50.000 21.06 11.56 38.79 2.52
3760 8113 2.424956 GAGTAAGGACCACGTACGGATT 59.575 50.000 21.06 1.97 38.79 3.01
3761 8114 2.019984 GAGTAAGGACCACGTACGGAT 58.980 52.381 21.06 3.85 38.79 4.18
3762 8115 1.271325 TGAGTAAGGACCACGTACGGA 60.271 52.381 21.06 0.00 38.79 4.69
3763 8116 1.167851 TGAGTAAGGACCACGTACGG 58.832 55.000 21.06 8.46 38.79 4.02
3764 8117 3.432782 GAATGAGTAAGGACCACGTACG 58.567 50.000 15.01 15.01 38.79 3.67
3765 8118 3.446516 AGGAATGAGTAAGGACCACGTAC 59.553 47.826 0.00 0.00 34.72 3.67
3766 8119 3.446161 CAGGAATGAGTAAGGACCACGTA 59.554 47.826 0.00 0.00 0.00 3.57
3767 8120 2.233922 CAGGAATGAGTAAGGACCACGT 59.766 50.000 0.00 0.00 0.00 4.49
3768 8121 2.893637 CAGGAATGAGTAAGGACCACG 58.106 52.381 0.00 0.00 0.00 4.94
3769 8122 2.633488 GCAGGAATGAGTAAGGACCAC 58.367 52.381 0.00 0.00 0.00 4.16
3770 8123 1.207089 CGCAGGAATGAGTAAGGACCA 59.793 52.381 0.00 0.00 0.00 4.02
3771 8124 1.941325 CGCAGGAATGAGTAAGGACC 58.059 55.000 0.00 0.00 0.00 4.46
3786 8139 1.216710 GACTTCCTGGAGTCCGCAG 59.783 63.158 4.30 0.00 40.10 5.18
3787 8140 0.832135 AAGACTTCCTGGAGTCCGCA 60.832 55.000 17.24 0.00 45.69 5.69
3788 8141 0.321996 AAAGACTTCCTGGAGTCCGC 59.678 55.000 17.24 1.02 45.69 5.54
3789 8142 1.338200 CCAAAGACTTCCTGGAGTCCG 60.338 57.143 17.24 0.00 45.69 4.79
3790 8143 1.700186 ACCAAAGACTTCCTGGAGTCC 59.300 52.381 12.06 0.73 45.69 3.85
3791 8144 3.493767 AACCAAAGACTTCCTGGAGTC 57.506 47.619 12.06 14.60 45.05 3.36
3792 8145 3.974642 AGTAACCAAAGACTTCCTGGAGT 59.025 43.478 12.06 0.00 34.16 3.85
3793 8146 4.319177 CAGTAACCAAAGACTTCCTGGAG 58.681 47.826 12.06 0.00 34.16 3.86
3794 8147 3.072476 CCAGTAACCAAAGACTTCCTGGA 59.928 47.826 12.06 0.00 40.49 3.86
3795 8148 3.412386 CCAGTAACCAAAGACTTCCTGG 58.588 50.000 4.62 4.62 36.24 4.45
3796 8149 3.181443 ACCCAGTAACCAAAGACTTCCTG 60.181 47.826 0.00 0.00 0.00 3.86
3797 8150 3.053826 ACCCAGTAACCAAAGACTTCCT 58.946 45.455 0.00 0.00 0.00 3.36
3798 8151 3.146847 CACCCAGTAACCAAAGACTTCC 58.853 50.000 0.00 0.00 0.00 3.46
3799 8152 2.552743 GCACCCAGTAACCAAAGACTTC 59.447 50.000 0.00 0.00 0.00 3.01
3800 8153 2.092103 TGCACCCAGTAACCAAAGACTT 60.092 45.455 0.00 0.00 0.00 3.01
3801 8154 1.493022 TGCACCCAGTAACCAAAGACT 59.507 47.619 0.00 0.00 0.00 3.24
3802 8155 1.975660 TGCACCCAGTAACCAAAGAC 58.024 50.000 0.00 0.00 0.00 3.01
3803 8156 2.303175 GTTGCACCCAGTAACCAAAGA 58.697 47.619 0.00 0.00 36.91 2.52
3804 8157 2.793278 GTTGCACCCAGTAACCAAAG 57.207 50.000 0.00 0.00 36.91 2.77
3809 8162 1.272212 CCATTGGTTGCACCCAGTAAC 59.728 52.381 2.20 0.00 41.48 2.50
3810 8163 1.626686 CCATTGGTTGCACCCAGTAA 58.373 50.000 2.20 0.00 37.50 2.24
3811 8164 0.251564 CCCATTGGTTGCACCCAGTA 60.252 55.000 2.20 0.00 37.50 2.74
3812 8165 1.533753 CCCATTGGTTGCACCCAGT 60.534 57.895 2.20 0.00 37.50 4.00
3813 8166 1.228831 TCCCATTGGTTGCACCCAG 60.229 57.895 2.20 0.00 37.50 4.45
3814 8167 1.228831 CTCCCATTGGTTGCACCCA 60.229 57.895 0.00 0.00 37.50 4.51
3815 8168 0.324645 ATCTCCCATTGGTTGCACCC 60.325 55.000 1.20 0.00 37.50 4.61
3816 8169 0.819582 CATCTCCCATTGGTTGCACC 59.180 55.000 1.20 0.00 39.22 5.01
3817 8170 0.819582 CCATCTCCCATTGGTTGCAC 59.180 55.000 1.20 0.00 0.00 4.57
3818 8171 0.409092 ACCATCTCCCATTGGTTGCA 59.591 50.000 1.20 0.00 43.73 4.08
3819 8172 2.301346 CTACCATCTCCCATTGGTTGC 58.699 52.381 1.20 0.00 43.73 4.17
3820 8173 2.301346 GCTACCATCTCCCATTGGTTG 58.699 52.381 1.20 0.00 43.73 3.77
3821 8174 1.922447 TGCTACCATCTCCCATTGGTT 59.078 47.619 1.20 0.00 43.73 3.67
3823 8176 1.811558 CGTGCTACCATCTCCCATTGG 60.812 57.143 0.00 0.00 39.02 3.16
3824 8177 1.586422 CGTGCTACCATCTCCCATTG 58.414 55.000 0.00 0.00 0.00 2.82
3825 8178 0.469917 CCGTGCTACCATCTCCCATT 59.530 55.000 0.00 0.00 0.00 3.16
3826 8179 1.410850 CCCGTGCTACCATCTCCCAT 61.411 60.000 0.00 0.00 0.00 4.00
3827 8180 2.063979 CCCGTGCTACCATCTCCCA 61.064 63.158 0.00 0.00 0.00 4.37
3828 8181 2.808206 CCCCGTGCTACCATCTCCC 61.808 68.421 0.00 0.00 0.00 4.30
3829 8182 0.757935 TACCCCGTGCTACCATCTCC 60.758 60.000 0.00 0.00 0.00 3.71
3830 8183 1.339097 ATACCCCGTGCTACCATCTC 58.661 55.000 0.00 0.00 0.00 2.75
3831 8184 2.688902 TATACCCCGTGCTACCATCT 57.311 50.000 0.00 0.00 0.00 2.90
3832 8185 3.259876 TGAATATACCCCGTGCTACCATC 59.740 47.826 0.00 0.00 0.00 3.51
3833 8186 3.244582 TGAATATACCCCGTGCTACCAT 58.755 45.455 0.00 0.00 0.00 3.55
3834 8187 2.680251 TGAATATACCCCGTGCTACCA 58.320 47.619 0.00 0.00 0.00 3.25
3835 8188 3.396560 GTTGAATATACCCCGTGCTACC 58.603 50.000 0.00 0.00 0.00 3.18
3836 8189 3.396560 GGTTGAATATACCCCGTGCTAC 58.603 50.000 0.00 0.00 0.00 3.58
3837 8190 2.036217 CGGTTGAATATACCCCGTGCTA 59.964 50.000 0.00 0.00 34.10 3.49
3838 8191 1.202604 CGGTTGAATATACCCCGTGCT 60.203 52.381 0.00 0.00 34.10 4.40
3839 8192 1.223187 CGGTTGAATATACCCCGTGC 58.777 55.000 0.00 0.00 34.10 5.34
3840 8193 1.139455 ACCGGTTGAATATACCCCGTG 59.861 52.381 0.00 0.00 36.98 4.94
3841 8194 1.499368 ACCGGTTGAATATACCCCGT 58.501 50.000 0.00 0.00 36.98 5.28
3842 8195 2.486918 GAACCGGTTGAATATACCCCG 58.513 52.381 27.87 0.00 38.39 5.73
3843 8196 2.486918 CGAACCGGTTGAATATACCCC 58.513 52.381 27.87 4.79 31.75 4.95
3844 8197 2.486918 CCGAACCGGTTGAATATACCC 58.513 52.381 27.87 5.62 42.73 3.69
3845 8198 3.744426 CATCCGAACCGGTTGAATATACC 59.256 47.826 27.87 6.43 46.01 2.73
3846 8199 3.744426 CCATCCGAACCGGTTGAATATAC 59.256 47.826 27.87 7.26 46.01 1.47
3847 8200 3.804411 GCCATCCGAACCGGTTGAATATA 60.804 47.826 27.87 4.15 46.01 0.86
3848 8201 2.846193 CCATCCGAACCGGTTGAATAT 58.154 47.619 27.87 9.83 46.01 1.28
3849 8202 1.744456 GCCATCCGAACCGGTTGAATA 60.744 52.381 27.87 7.68 46.01 1.75
3850 8203 1.029947 GCCATCCGAACCGGTTGAAT 61.030 55.000 27.87 12.13 46.01 2.57
3851 8204 1.673009 GCCATCCGAACCGGTTGAA 60.673 57.895 27.87 10.11 46.01 2.69
3852 8205 2.046700 GCCATCCGAACCGGTTGA 60.047 61.111 27.87 17.58 46.01 3.18
3859 8212 2.964438 TATGCGACCGCCATCCGAAC 62.964 60.000 12.08 0.00 41.09 3.95
3860 8213 2.299503 TTATGCGACCGCCATCCGAA 62.300 55.000 12.08 0.00 41.09 4.30
3861 8214 2.787567 TTATGCGACCGCCATCCGA 61.788 57.895 12.08 0.00 41.09 4.55
3862 8215 2.279851 TTATGCGACCGCCATCCG 60.280 61.111 12.08 0.00 41.09 4.18
3863 8216 1.498865 CTGTTATGCGACCGCCATCC 61.499 60.000 12.08 0.00 41.09 3.51
3864 8217 1.498865 CCTGTTATGCGACCGCCATC 61.499 60.000 12.08 1.22 41.09 3.51
3865 8218 1.523711 CCTGTTATGCGACCGCCAT 60.524 57.895 12.08 8.00 41.09 4.40
3866 8219 1.966901 ATCCTGTTATGCGACCGCCA 61.967 55.000 12.08 1.69 41.09 5.69
3867 8220 0.032952 TATCCTGTTATGCGACCGCC 59.967 55.000 12.08 0.00 41.09 6.13
3868 8221 1.419374 CTATCCTGTTATGCGACCGC 58.581 55.000 7.53 7.53 42.35 5.68
3869 8222 1.611977 TCCTATCCTGTTATGCGACCG 59.388 52.381 0.00 0.00 0.00 4.79
3870 8223 2.628657 ACTCCTATCCTGTTATGCGACC 59.371 50.000 0.00 0.00 0.00 4.79
3871 8224 3.570550 AGACTCCTATCCTGTTATGCGAC 59.429 47.826 0.00 0.00 0.00 5.19
3872 8225 3.833732 AGACTCCTATCCTGTTATGCGA 58.166 45.455 0.00 0.00 0.00 5.10
3873 8226 4.156922 CCTAGACTCCTATCCTGTTATGCG 59.843 50.000 0.00 0.00 0.00 4.73
3874 8227 4.464597 CCCTAGACTCCTATCCTGTTATGC 59.535 50.000 0.00 0.00 0.00 3.14
3875 8228 5.893500 TCCCTAGACTCCTATCCTGTTATG 58.106 45.833 0.00 0.00 0.00 1.90
3876 8229 5.517655 GCTCCCTAGACTCCTATCCTGTTAT 60.518 48.000 0.00 0.00 0.00 1.89
3877 8230 4.202588 GCTCCCTAGACTCCTATCCTGTTA 60.203 50.000 0.00 0.00 0.00 2.41
3878 8231 3.437344 GCTCCCTAGACTCCTATCCTGTT 60.437 52.174 0.00 0.00 0.00 3.16
3879 8232 2.109304 GCTCCCTAGACTCCTATCCTGT 59.891 54.545 0.00 0.00 0.00 4.00
3880 8233 2.378547 AGCTCCCTAGACTCCTATCCTG 59.621 54.545 0.00 0.00 0.00 3.86
3881 8234 2.725795 AGCTCCCTAGACTCCTATCCT 58.274 52.381 0.00 0.00 0.00 3.24
3882 8235 3.536075 AAGCTCCCTAGACTCCTATCC 57.464 52.381 0.00 0.00 0.00 2.59
3883 8236 5.044402 AGGATAAGCTCCCTAGACTCCTATC 60.044 48.000 0.00 0.00 46.27 2.08
3884 8237 4.861454 AGGATAAGCTCCCTAGACTCCTAT 59.139 45.833 0.00 0.00 46.27 2.57
3885 8238 4.252853 AGGATAAGCTCCCTAGACTCCTA 58.747 47.826 0.00 0.00 46.27 2.94
3886 8239 3.068237 AGGATAAGCTCCCTAGACTCCT 58.932 50.000 0.00 0.00 46.27 3.69
3887 8240 3.075432 AGAGGATAAGCTCCCTAGACTCC 59.925 52.174 2.66 0.00 46.27 3.85
3888 8241 4.382386 AGAGGATAAGCTCCCTAGACTC 57.618 50.000 2.66 0.00 46.27 3.36
3889 8242 4.825199 AAGAGGATAAGCTCCCTAGACT 57.175 45.455 2.66 0.00 46.27 3.24
3890 8243 5.880164 AAAAGAGGATAAGCTCCCTAGAC 57.120 43.478 2.66 0.00 46.27 2.59
3910 8263 7.282675 TCAGAAATACAACCGGTAAGTCAAAAA 59.717 33.333 8.00 0.00 35.14 1.94
3911 8264 6.766944 TCAGAAATACAACCGGTAAGTCAAAA 59.233 34.615 8.00 0.00 35.14 2.44
3912 8265 6.289834 TCAGAAATACAACCGGTAAGTCAAA 58.710 36.000 8.00 0.00 35.14 2.69
3913 8266 5.856156 TCAGAAATACAACCGGTAAGTCAA 58.144 37.500 8.00 0.00 35.14 3.18
3914 8267 5.471556 TCAGAAATACAACCGGTAAGTCA 57.528 39.130 8.00 0.00 35.14 3.41
3915 8268 4.329256 GCTCAGAAATACAACCGGTAAGTC 59.671 45.833 8.00 0.00 35.14 3.01
3916 8269 4.251268 GCTCAGAAATACAACCGGTAAGT 58.749 43.478 8.00 13.08 35.14 2.24
3917 8270 4.250464 TGCTCAGAAATACAACCGGTAAG 58.750 43.478 8.00 6.45 35.14 2.34
3918 8271 4.274602 TGCTCAGAAATACAACCGGTAA 57.725 40.909 8.00 0.00 35.14 2.85
3919 8272 3.965379 TGCTCAGAAATACAACCGGTA 57.035 42.857 8.00 0.00 36.16 4.02
3920 8273 2.851263 TGCTCAGAAATACAACCGGT 57.149 45.000 0.00 0.00 0.00 5.28
3921 8274 3.009723 ACATGCTCAGAAATACAACCGG 58.990 45.455 0.00 0.00 0.00 5.28
3922 8275 4.870426 AGTACATGCTCAGAAATACAACCG 59.130 41.667 0.00 0.00 0.00 4.44
3923 8276 6.743575 AAGTACATGCTCAGAAATACAACC 57.256 37.500 0.00 0.00 0.00 3.77
3932 8285 9.897744 CAAAGAAAATAAAAGTACATGCTCAGA 57.102 29.630 0.00 0.00 0.00 3.27
3933 8286 9.683069 ACAAAGAAAATAAAAGTACATGCTCAG 57.317 29.630 0.00 0.00 0.00 3.35
3943 8296 8.387354 CGGAGCAAAAACAAAGAAAATAAAAGT 58.613 29.630 0.00 0.00 0.00 2.66
3944 8297 8.752061 CGGAGCAAAAACAAAGAAAATAAAAG 57.248 30.769 0.00 0.00 0.00 2.27
3970 8323 6.090088 GTCATGAAGGTATTATAGCTCGCAAG 59.910 42.308 4.32 4.34 35.05 4.01
3971 8324 5.926542 GTCATGAAGGTATTATAGCTCGCAA 59.073 40.000 4.32 0.00 35.05 4.85
3972 8325 5.243954 AGTCATGAAGGTATTATAGCTCGCA 59.756 40.000 4.32 6.86 35.05 5.10
3973 8326 5.715070 AGTCATGAAGGTATTATAGCTCGC 58.285 41.667 4.32 1.60 35.05 5.03
3974 8327 7.116948 CCAAAGTCATGAAGGTATTATAGCTCG 59.883 40.741 4.32 0.00 35.05 5.03
3975 8328 7.389053 CCCAAAGTCATGAAGGTATTATAGCTC 59.611 40.741 4.32 0.26 35.05 4.09
3976 8329 7.072454 TCCCAAAGTCATGAAGGTATTATAGCT 59.928 37.037 0.00 0.00 38.32 3.32
3977 8330 7.224297 TCCCAAAGTCATGAAGGTATTATAGC 58.776 38.462 0.00 0.00 0.00 2.97
3978 8331 9.799106 AATCCCAAAGTCATGAAGGTATTATAG 57.201 33.333 0.00 0.00 0.00 1.31
3979 8332 9.793259 GAATCCCAAAGTCATGAAGGTATTATA 57.207 33.333 0.00 0.00 0.00 0.98
3980 8333 8.506083 AGAATCCCAAAGTCATGAAGGTATTAT 58.494 33.333 0.00 0.00 0.00 1.28
3981 8334 7.872138 AGAATCCCAAAGTCATGAAGGTATTA 58.128 34.615 0.00 0.00 0.00 0.98
3982 8335 6.735556 AGAATCCCAAAGTCATGAAGGTATT 58.264 36.000 0.00 0.00 0.00 1.89
3983 8336 6.332976 AGAATCCCAAAGTCATGAAGGTAT 57.667 37.500 0.00 0.00 0.00 2.73
3984 8337 5.779241 AGAATCCCAAAGTCATGAAGGTA 57.221 39.130 0.00 0.00 0.00 3.08
3985 8338 4.664688 AGAATCCCAAAGTCATGAAGGT 57.335 40.909 0.00 0.00 0.00 3.50
3986 8339 4.095483 CGAAGAATCCCAAAGTCATGAAGG 59.905 45.833 0.00 0.00 0.00 3.46
3987 8340 4.937620 TCGAAGAATCCCAAAGTCATGAAG 59.062 41.667 0.00 0.00 0.00 3.02
3988 8341 4.905429 TCGAAGAATCCCAAAGTCATGAA 58.095 39.130 0.00 0.00 0.00 2.57
3989 8342 4.222810 TCTCGAAGAATCCCAAAGTCATGA 59.777 41.667 0.00 0.00 34.09 3.07
3990 8343 4.331168 GTCTCGAAGAATCCCAAAGTCATG 59.669 45.833 0.00 0.00 34.09 3.07
3991 8344 4.223923 AGTCTCGAAGAATCCCAAAGTCAT 59.776 41.667 0.00 0.00 34.09 3.06
3992 8345 3.578716 AGTCTCGAAGAATCCCAAAGTCA 59.421 43.478 0.00 0.00 34.09 3.41
3993 8346 4.195225 AGTCTCGAAGAATCCCAAAGTC 57.805 45.455 0.00 0.00 34.09 3.01
3994 8347 4.284746 AGAAGTCTCGAAGAATCCCAAAGT 59.715 41.667 0.00 0.00 34.09 2.66
3995 8348 4.826556 AGAAGTCTCGAAGAATCCCAAAG 58.173 43.478 0.00 0.00 34.09 2.77
3996 8349 4.891992 AGAAGTCTCGAAGAATCCCAAA 57.108 40.909 0.00 0.00 34.09 3.28
3997 8350 4.891992 AAGAAGTCTCGAAGAATCCCAA 57.108 40.909 0.00 0.00 34.09 4.12
3998 8351 5.995565 TTAAGAAGTCTCGAAGAATCCCA 57.004 39.130 0.00 0.00 34.09 4.37
3999 8352 8.414778 TCTTATTAAGAAGTCTCGAAGAATCCC 58.585 37.037 9.55 0.00 31.76 3.85
4000 8353 9.974980 ATCTTATTAAGAAGTCTCGAAGAATCC 57.025 33.333 10.07 0.00 41.63 3.01
4002 8355 9.757227 CCATCTTATTAAGAAGTCTCGAAGAAT 57.243 33.333 10.07 0.00 41.63 2.40
4003 8356 7.707035 GCCATCTTATTAAGAAGTCTCGAAGAA 59.293 37.037 10.07 0.00 41.63 2.52
4004 8357 7.068839 AGCCATCTTATTAAGAAGTCTCGAAGA 59.931 37.037 10.07 0.00 41.63 2.87
4005 8358 7.168972 CAGCCATCTTATTAAGAAGTCTCGAAG 59.831 40.741 10.07 0.00 41.63 3.79
4006 8359 6.980978 CAGCCATCTTATTAAGAAGTCTCGAA 59.019 38.462 10.07 0.00 41.63 3.71
4007 8360 6.507900 CAGCCATCTTATTAAGAAGTCTCGA 58.492 40.000 10.07 0.00 41.63 4.04
4008 8361 5.176590 GCAGCCATCTTATTAAGAAGTCTCG 59.823 44.000 10.07 0.41 41.63 4.04
4009 8362 6.051717 TGCAGCCATCTTATTAAGAAGTCTC 58.948 40.000 10.07 0.67 41.63 3.36
4010 8363 5.994250 TGCAGCCATCTTATTAAGAAGTCT 58.006 37.500 10.07 0.00 41.63 3.24
4011 8364 6.666417 CATGCAGCCATCTTATTAAGAAGTC 58.334 40.000 10.07 0.00 41.63 3.01
4012 8365 5.009410 GCATGCAGCCATCTTATTAAGAAGT 59.991 40.000 14.21 0.00 38.03 3.01
4013 8366 5.009310 TGCATGCAGCCATCTTATTAAGAAG 59.991 40.000 18.46 3.35 44.83 2.85
4014 8367 4.888823 TGCATGCAGCCATCTTATTAAGAA 59.111 37.500 18.46 0.00 44.83 2.52
4015 8368 4.463070 TGCATGCAGCCATCTTATTAAGA 58.537 39.130 18.46 8.53 44.83 2.10
4016 8369 4.841443 TGCATGCAGCCATCTTATTAAG 57.159 40.909 18.46 0.00 44.83 1.85
4017 8370 4.828387 TGATGCATGCAGCCATCTTATTAA 59.172 37.500 31.30 7.33 44.83 1.40
4018 8371 4.400120 TGATGCATGCAGCCATCTTATTA 58.600 39.130 31.30 8.11 44.83 0.98
4019 8372 3.227614 TGATGCATGCAGCCATCTTATT 58.772 40.909 31.30 8.21 44.83 1.40
4020 8373 2.871453 TGATGCATGCAGCCATCTTAT 58.129 42.857 31.30 9.02 44.83 1.73
4021 8374 2.351706 TGATGCATGCAGCCATCTTA 57.648 45.000 31.30 10.43 44.83 2.10
4022 8375 1.704641 ATGATGCATGCAGCCATCTT 58.295 45.000 31.30 16.09 44.83 2.40
4023 8376 1.704641 AATGATGCATGCAGCCATCT 58.295 45.000 31.30 18.87 44.83 2.90
4024 8377 3.192633 TCATAATGATGCATGCAGCCATC 59.807 43.478 31.30 20.98 44.83 3.51
4025 8378 3.161866 TCATAATGATGCATGCAGCCAT 58.838 40.909 31.30 27.32 44.83 4.40
4026 8379 2.588620 TCATAATGATGCATGCAGCCA 58.411 42.857 31.30 26.44 44.83 4.75
4027 8380 3.511699 CATCATAATGATGCATGCAGCC 58.488 45.455 31.30 22.02 46.37 4.85
4037 8390 2.617276 CCGGCCTCTGCATCATAATGAT 60.617 50.000 0.00 0.00 37.65 2.45
4038 8391 1.271001 CCGGCCTCTGCATCATAATGA 60.271 52.381 0.00 0.00 40.13 2.57
4039 8392 1.162698 CCGGCCTCTGCATCATAATG 58.837 55.000 0.00 0.00 40.13 1.90
4040 8393 0.037303 CCCGGCCTCTGCATCATAAT 59.963 55.000 0.00 0.00 40.13 1.28
4041 8394 1.451504 CCCGGCCTCTGCATCATAA 59.548 57.895 0.00 0.00 40.13 1.90
4042 8395 2.519622 CCCCGGCCTCTGCATCATA 61.520 63.158 0.00 0.00 40.13 2.15
4043 8396 3.882326 CCCCGGCCTCTGCATCAT 61.882 66.667 0.00 0.00 40.13 2.45
4057 8410 4.759205 AAATGGAGGCGTGCCCCC 62.759 66.667 7.39 5.75 36.58 5.40
4058 8411 3.140814 GAAATGGAGGCGTGCCCC 61.141 66.667 7.39 9.22 36.58 5.80
4059 8412 3.140814 GGAAATGGAGGCGTGCCC 61.141 66.667 7.39 0.00 36.58 5.36
4060 8413 1.531739 TTTGGAAATGGAGGCGTGCC 61.532 55.000 1.67 1.67 0.00 5.01
4061 8414 0.316841 TTTTGGAAATGGAGGCGTGC 59.683 50.000 0.00 0.00 0.00 5.34
4062 8415 2.810439 TTTTTGGAAATGGAGGCGTG 57.190 45.000 0.00 0.00 0.00 5.34
4081 8434 6.601332 TGTCACAACCCTCTATTCTCTTTTT 58.399 36.000 0.00 0.00 0.00 1.94
4082 8435 6.187727 TGTCACAACCCTCTATTCTCTTTT 57.812 37.500 0.00 0.00 0.00 2.27
4083 8436 5.825593 TGTCACAACCCTCTATTCTCTTT 57.174 39.130 0.00 0.00 0.00 2.52
4084 8437 5.825593 TTGTCACAACCCTCTATTCTCTT 57.174 39.130 0.00 0.00 0.00 2.85
4098 8451 6.970043 CAGTATTTTCCGTTCTTTTGTCACAA 59.030 34.615 0.00 0.00 0.00 3.33
4106 8459 3.057526 GCTGCCAGTATTTTCCGTTCTTT 60.058 43.478 0.00 0.00 0.00 2.52
4112 8465 2.627945 TGTAGCTGCCAGTATTTTCCG 58.372 47.619 0.00 0.00 0.00 4.30
4119 8472 2.361119 CGTTCCTATGTAGCTGCCAGTA 59.639 50.000 0.00 0.00 0.00 2.74
4132 8485 5.854010 TCTAAGCTTCATGACGTTCCTAT 57.146 39.130 0.00 0.00 0.00 2.57
4133 8486 5.654603 TTCTAAGCTTCATGACGTTCCTA 57.345 39.130 0.00 0.00 0.00 2.94
4173 8526 4.572909 AGAATACCCTAAGCGACGTTTTT 58.427 39.130 1.29 0.00 0.00 1.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.