Multiple sequence alignment - TraesCS5D01G060600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G060600 chr5D 100.000 8766 0 0 1 8766 57398056 57389291 0.000000e+00 16188.0
1 TraesCS5D01G060600 chr5D 96.915 551 17 0 1 551 213683931 213684481 0.000000e+00 924.0
2 TraesCS5D01G060600 chr5D 96.733 551 18 0 1 551 77714712 77715262 0.000000e+00 918.0
3 TraesCS5D01G060600 chr5D 96.733 551 18 0 1 551 213774243 213774793 0.000000e+00 918.0
4 TraesCS5D01G060600 chr5D 96.558 552 18 1 1 551 57421613 57421062 0.000000e+00 913.0
5 TraesCS5D01G060600 chr5D 84.795 171 24 2 2985 3155 416211706 416211874 4.210000e-38 171.0
6 TraesCS5D01G060600 chr5D 88.506 87 8 1 4242 4328 539963186 539963270 4.330000e-18 104.0
7 TraesCS5D01G060600 chr5D 88.506 87 8 1 4242 4328 539963270 539963186 4.330000e-18 104.0
8 TraesCS5D01G060600 chr5D 95.349 43 0 1 4610 4652 57393406 57393366 5.680000e-07 67.6
9 TraesCS5D01G060600 chr5D 95.349 43 0 1 4651 4691 57393447 57393405 5.680000e-07 67.6
10 TraesCS5D01G060600 chr5B 96.434 3505 99 16 746 4236 60891733 60895225 0.000000e+00 5757.0
11 TraesCS5D01G060600 chr5B 91.313 1508 80 25 6428 7909 60897279 60898761 0.000000e+00 2012.0
12 TraesCS5D01G060600 chr5B 98.230 791 13 1 4253 5043 60895272 60896061 0.000000e+00 1382.0
13 TraesCS5D01G060600 chr5B 96.628 682 21 1 5749 6428 60896552 60897233 0.000000e+00 1131.0
14 TraesCS5D01G060600 chr5B 98.783 493 6 0 5118 5610 60896060 60896552 0.000000e+00 878.0
15 TraesCS5D01G060600 chr5B 86.455 598 20 7 7905 8477 60898832 60899393 4.530000e-167 599.0
16 TraesCS5D01G060600 chr5B 94.118 289 17 0 8478 8766 60899811 60900099 2.900000e-119 440.0
17 TraesCS5D01G060600 chr5B 92.462 199 9 5 551 745 60891504 60891700 6.700000e-71 279.0
18 TraesCS5D01G060600 chr5B 95.349 43 0 1 4610 4652 60895669 60895709 5.680000e-07 67.6
19 TraesCS5D01G060600 chr5A 92.208 3170 145 38 629 3735 45714999 45711869 0.000000e+00 4392.0
20 TraesCS5D01G060600 chr5A 93.835 1395 60 12 6469 7846 45709002 45707617 0.000000e+00 2076.0
21 TraesCS5D01G060600 chr5A 96.458 960 32 2 4651 5610 45710638 45709681 0.000000e+00 1583.0
22 TraesCS5D01G060600 chr5A 94.035 922 46 7 3734 4652 45711513 45710598 0.000000e+00 1389.0
23 TraesCS5D01G060600 chr5A 95.015 682 29 4 5749 6428 45709681 45709003 0.000000e+00 1066.0
24 TraesCS5D01G060600 chr5A 83.626 171 24 3 2985 3155 528940588 528940754 3.280000e-34 158.0
25 TraesCS5D01G060600 chr5A 86.486 111 9 5 4238 4346 624795599 624795493 5.560000e-22 117.0
26 TraesCS5D01G060600 chr3D 96.733 551 18 0 1 551 86950046 86949496 0.000000e+00 918.0
27 TraesCS5D01G060600 chr3D 84.795 171 23 3 2986 3155 540562637 540562469 1.510000e-37 169.0
28 TraesCS5D01G060600 chr7D 96.558 552 19 0 1 552 307619650 307619099 0.000000e+00 915.0
29 TraesCS5D01G060600 chr6D 96.552 551 19 0 1 551 140576815 140577365 0.000000e+00 913.0
30 TraesCS5D01G060600 chr6D 79.412 170 33 2 2986 3155 277021653 277021486 1.550000e-22 119.0
31 TraesCS5D01G060600 chr6D 87.368 95 5 3 4238 4332 72021725 72021812 1.560000e-17 102.0
32 TraesCS5D01G060600 chr6D 97.297 37 1 0 669 705 449180804 449180768 7.350000e-06 63.9
33 TraesCS5D01G060600 chr6D 89.583 48 5 0 664 711 78360780 78360827 2.640000e-05 62.1
34 TraesCS5D01G060600 chr4D 96.552 551 19 0 1 551 65529454 65528904 0.000000e+00 913.0
35 TraesCS5D01G060600 chr1D 96.552 551 19 0 1 551 101975815 101975265 0.000000e+00 913.0
36 TraesCS5D01G060600 chr1D 99.301 143 1 0 5607 5749 212431287 212431429 8.730000e-65 259.0
37 TraesCS5D01G060600 chr1D 99.301 143 1 0 5607 5749 350953353 350953495 8.730000e-65 259.0
38 TraesCS5D01G060600 chrUn 99.301 143 1 0 5607 5749 233522855 233522713 8.730000e-65 259.0
39 TraesCS5D01G060600 chrUn 99.301 143 1 0 5607 5749 369796588 369796730 8.730000e-65 259.0
40 TraesCS5D01G060600 chrUn 94.737 76 4 0 4242 4317 31520667 31520742 1.550000e-22 119.0
41 TraesCS5D01G060600 chr7B 99.301 143 1 0 5607 5749 698124521 698124379 8.730000e-65 259.0
42 TraesCS5D01G060600 chr7B 99.301 143 1 0 5607 5749 716793425 716793283 8.730000e-65 259.0
43 TraesCS5D01G060600 chr7B 80.588 170 33 0 2986 3155 697560160 697559991 1.990000e-26 132.0
44 TraesCS5D01G060600 chr7B 80.347 173 29 3 2986 3155 695361155 695360985 9.240000e-25 126.0
45 TraesCS5D01G060600 chr4B 99.301 143 1 0 5607 5749 495535362 495535220 8.730000e-65 259.0
46 TraesCS5D01G060600 chr1B 99.301 143 1 0 5607 5749 49820259 49820401 8.730000e-65 259.0
47 TraesCS5D01G060600 chr1B 99.301 143 1 0 5607 5749 491510151 491510009 8.730000e-65 259.0
48 TraesCS5D01G060600 chr1B 88.636 88 10 0 4242 4329 571427586 571427499 3.350000e-19 108.0
49 TraesCS5D01G060600 chr2A 88.957 163 17 1 8478 8639 356720715 356720877 5.370000e-47 200.0
50 TraesCS5D01G060600 chr2A 84.756 164 19 5 2986 3147 719490184 719490343 9.110000e-35 159.0
51 TraesCS5D01G060600 chr6A 81.395 172 27 5 2986 3154 398639656 398639825 1.540000e-27 135.0
52 TraesCS5D01G060600 chr6A 86.598 97 6 3 4236 4332 88767582 88767671 5.600000e-17 100.0
53 TraesCS5D01G060600 chr6A 93.750 48 3 0 665 712 595007471 595007424 1.220000e-08 73.1
54 TraesCS5D01G060600 chr3B 93.750 48 3 0 669 716 79295758 79295711 1.220000e-08 73.1
55 TraesCS5D01G060600 chr3B 88.235 51 4 1 649 697 79298181 79298231 9.500000e-05 60.2
56 TraesCS5D01G060600 chr1A 92.857 42 2 1 559 600 575370517 575370477 9.500000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G060600 chr5D 57389291 57398056 8765 True 16188.000000 16188 100.000000 1 8766 1 chr5D.!!$R1 8765
1 TraesCS5D01G060600 chr5D 213683931 213684481 550 False 924.000000 924 96.915000 1 551 1 chr5D.!!$F2 550
2 TraesCS5D01G060600 chr5D 77714712 77715262 550 False 918.000000 918 96.733000 1 551 1 chr5D.!!$F1 550
3 TraesCS5D01G060600 chr5D 213774243 213774793 550 False 918.000000 918 96.733000 1 551 1 chr5D.!!$F3 550
4 TraesCS5D01G060600 chr5D 57421062 57421613 551 True 913.000000 913 96.558000 1 551 1 chr5D.!!$R2 550
5 TraesCS5D01G060600 chr5B 60891504 60900099 8595 False 1393.955556 5757 94.419111 551 8766 9 chr5B.!!$F1 8215
6 TraesCS5D01G060600 chr5A 45707617 45714999 7382 True 2101.200000 4392 94.310200 629 7846 5 chr5A.!!$R2 7217
7 TraesCS5D01G060600 chr3D 86949496 86950046 550 True 918.000000 918 96.733000 1 551 1 chr3D.!!$R1 550
8 TraesCS5D01G060600 chr7D 307619099 307619650 551 True 915.000000 915 96.558000 1 552 1 chr7D.!!$R1 551
9 TraesCS5D01G060600 chr6D 140576815 140577365 550 False 913.000000 913 96.552000 1 551 1 chr6D.!!$F3 550
10 TraesCS5D01G060600 chr4D 65528904 65529454 550 True 913.000000 913 96.552000 1 551 1 chr4D.!!$R1 550
11 TraesCS5D01G060600 chr1D 101975265 101975815 550 True 913.000000 913 96.552000 1 551 1 chr1D.!!$R1 550

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
918 953 0.031585 GGTTTCCGACCCAACAAAGC 59.968 55.000 0.0 0.0 43.06 3.51 F
959 996 1.463553 AAAACAGCCCTCTTTGCCCG 61.464 55.000 0.0 0.0 0.00 6.13 F
1305 1359 2.012673 GCCTCGTGATTGAAGCTGATT 58.987 47.619 0.0 0.0 0.00 2.57 F
1587 1641 3.120511 GCCTGTTGATTTGAAGTCGAGAC 60.121 47.826 0.0 0.0 0.00 3.36 F
2956 3026 2.350772 GGATGCATAAATCCGCTTTCCG 60.351 50.000 0.0 0.0 36.99 4.30 F
3601 3696 1.780309 ACATGGAGGTCCTGAAAACCA 59.220 47.619 0.0 0.0 39.39 3.67 F
3807 4260 1.202687 TCAGATGCCTATTGCTTCCGG 60.203 52.381 0.0 0.0 43.37 5.14 F
4620 5107 1.271379 GCCTCACAGGTTGGTGTACAT 60.271 52.381 0.0 0.0 37.80 2.29 F
5644 6131 0.032813 CACTTGGGATGGGAATGGCT 60.033 55.000 0.0 0.0 0.00 4.75 F
5687 6174 0.034059 AAAGCACTCCAGTCCAGTCG 59.966 55.000 0.0 0.0 0.00 4.18 F
6463 6954 0.034574 TCCCGTGATTTGGTGGATGG 60.035 55.000 0.0 0.0 0.00 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2078 2135 2.045536 GAAGGCCAGGGTGCTCAG 60.046 66.667 5.01 0.0 0.00 3.35 R
2672 2729 2.289882 TGCCAGAAGACCAGATTCACAG 60.290 50.000 0.00 0.0 0.00 3.66 R
2956 3026 2.484264 AGCAGCAACACGATAAAAGGAC 59.516 45.455 0.00 0.0 0.00 3.85 R
3233 3316 4.753610 GTGAACCAACCTTCTAACAGTACC 59.246 45.833 0.00 0.0 0.00 3.34 R
3807 4260 1.096416 ATCTCGTCGACTCAAGTCCC 58.904 55.000 14.70 0.0 41.86 4.46 R
5210 5697 1.373999 GACGCTCTCAGCTGCAACT 60.374 57.895 9.47 0.0 39.60 3.16 R
5625 6112 0.032813 AGCCATTCCCATCCCAAGTG 60.033 55.000 0.00 0.0 0.00 3.16 R
5668 6155 0.034059 CGACTGGACTGGAGTGCTTT 59.966 55.000 0.00 0.0 37.28 3.51 R
6463 6954 0.109132 CGAAAAATGCTGTGAGGGCC 60.109 55.000 0.00 0.0 0.00 5.80 R
7490 8086 0.113972 TTCATTGCCATCACCCACCA 59.886 50.000 0.00 0.0 0.00 4.17 R
8115 8793 0.105039 GTGGGATGGGTCGATGAGTC 59.895 60.000 0.00 0.0 0.00 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
166 168 4.511082 GCTCTGGATAAGATTTGCTCTCAC 59.489 45.833 0.00 0.00 33.29 3.51
259 261 3.493002 CCACTTAACAGTACGGTGGTTCA 60.493 47.826 0.00 0.00 41.52 3.18
266 268 3.118884 ACAGTACGGTGGTTCATATGACC 60.119 47.826 4.48 10.67 0.00 4.02
283 285 7.723616 TCATATGACCCAACAAAGAAGAAAAGA 59.276 33.333 0.00 0.00 0.00 2.52
356 358 8.971073 TGTCTTCTCATGTCATAGTCTTCATTA 58.029 33.333 0.00 0.00 0.00 1.90
451 453 5.148502 ACCGAATCAATGAGGGACTACTAT 58.851 41.667 5.03 0.00 41.55 2.12
533 535 2.107552 CTCCAAAACCAACTAGGGGTGA 59.892 50.000 8.90 2.30 43.89 4.02
552 554 4.556233 GTGACACTAGATGCACTTACACA 58.444 43.478 0.00 0.00 34.45 3.72
553 555 4.386049 GTGACACTAGATGCACTTACACAC 59.614 45.833 0.00 0.00 34.45 3.82
554 556 3.575630 ACACTAGATGCACTTACACACG 58.424 45.455 0.00 0.00 0.00 4.49
555 557 3.005472 ACACTAGATGCACTTACACACGT 59.995 43.478 0.00 0.00 0.00 4.49
556 558 3.987868 CACTAGATGCACTTACACACGTT 59.012 43.478 0.00 0.00 0.00 3.99
557 559 4.090066 CACTAGATGCACTTACACACGTTC 59.910 45.833 0.00 0.00 0.00 3.95
558 560 2.413837 AGATGCACTTACACACGTTCC 58.586 47.619 0.00 0.00 0.00 3.62
566 568 4.093703 CACTTACACACGTTCCTTGTGAAA 59.906 41.667 9.78 0.00 46.18 2.69
573 575 5.173673 CACACGTTCCTTGTGAAAATTCATG 59.826 40.000 0.00 0.00 46.18 3.07
616 618 3.959495 ACATGGGAGCATTTAGGATGT 57.041 42.857 0.00 0.00 0.00 3.06
716 718 4.132336 CACTGGATATTCACCCATCTGTG 58.868 47.826 0.00 0.00 37.59 3.66
797 832 2.901249 CTTATATGAATACGGCCCGGG 58.099 52.381 19.09 19.09 0.00 5.73
883 918 1.042559 CACTGGCACAAACCCAAGGT 61.043 55.000 0.00 0.00 38.70 3.50
918 953 0.031585 GGTTTCCGACCCAACAAAGC 59.968 55.000 0.00 0.00 43.06 3.51
959 996 1.463553 AAAACAGCCCTCTTTGCCCG 61.464 55.000 0.00 0.00 0.00 6.13
1305 1359 2.012673 GCCTCGTGATTGAAGCTGATT 58.987 47.619 0.00 0.00 0.00 2.57
1563 1617 3.201290 CTCGAGCCATTGTCTTATGCTT 58.799 45.455 0.00 0.00 0.00 3.91
1587 1641 3.120511 GCCTGTTGATTTGAAGTCGAGAC 60.121 47.826 0.00 0.00 0.00 3.36
1738 1795 4.889995 GCTATTCAAGATAAGGCAAAGGGT 59.110 41.667 0.00 0.00 0.00 4.34
1846 1903 5.003804 GCTCAGGTGAGGTTTTCAGATTTA 58.996 41.667 9.03 0.00 42.29 1.40
1848 1905 5.935945 TCAGGTGAGGTTTTCAGATTTACA 58.064 37.500 0.00 0.00 36.21 2.41
1910 1967 6.915544 TGCTTAGAACTTCATCATGTCATC 57.084 37.500 0.00 0.00 0.00 2.92
1984 2041 4.021192 TGTTCTGGAGAATTTTTGGGCATC 60.021 41.667 0.00 0.00 36.33 3.91
2035 2092 6.547510 GGAGCATACCTACCAAAGATTTCAAT 59.452 38.462 0.00 0.00 0.00 2.57
2164 2221 3.523564 TCCTAATCTGGAGAGGTTTTGGG 59.476 47.826 0.00 0.00 0.00 4.12
2352 2409 8.515414 AGGTTTTGATTACTGATGCTTTTACTC 58.485 33.333 0.00 0.00 0.00 2.59
2361 2418 7.763172 ACTGATGCTTTTACTCTTTATCGAG 57.237 36.000 0.00 0.00 37.07 4.04
2372 2429 8.780846 TTACTCTTTATCGAGTGCCATTTTTA 57.219 30.769 3.87 0.00 43.68 1.52
2585 2642 7.607991 CCATTTCCTGTGTAAGTATCACTTCTT 59.392 37.037 0.00 0.00 39.51 2.52
2685 2742 7.730364 TTTAAGAAGTTCTGTGAATCTGGTC 57.270 36.000 6.06 0.00 0.00 4.02
2956 3026 2.350772 GGATGCATAAATCCGCTTTCCG 60.351 50.000 0.00 0.00 36.99 4.30
2984 3054 7.116233 CCTTTTATCGTGTTGCTGCTAAATTTT 59.884 33.333 0.00 0.00 0.00 1.82
3233 3316 5.911280 CACAGCAGTAGAACATTTCAAAGTG 59.089 40.000 0.00 0.00 0.00 3.16
3512 3599 2.035442 GGGTCGCCAAGAGTCAAGC 61.035 63.158 0.00 0.00 0.00 4.01
3520 3615 3.304928 CGCCAAGAGTCAAGCTTTTCAAT 60.305 43.478 0.00 0.00 0.00 2.57
3601 3696 1.780309 ACATGGAGGTCCTGAAAACCA 59.220 47.619 0.00 0.00 39.39 3.67
3628 3723 5.183713 TCTGGAATTAAGGTTTGTGCATCAG 59.816 40.000 0.00 0.00 0.00 2.90
3791 4244 3.070159 CCTTCTGTGTTTGTCTCCTCAGA 59.930 47.826 0.00 0.00 0.00 3.27
3807 4260 1.202687 TCAGATGCCTATTGCTTCCGG 60.203 52.381 0.00 0.00 43.37 5.14
4246 4701 4.990257 TGCTGTGTCGTATTTACTACTCC 58.010 43.478 0.00 0.00 0.00 3.85
4412 4899 9.209175 GTCACTCTCTGTTTATTATTCACAGTT 57.791 33.333 0.00 0.00 39.24 3.16
4540 5027 3.412237 TTAGGTGGCCTTGTTACACTC 57.588 47.619 3.32 0.00 34.61 3.51
4620 5107 1.271379 GCCTCACAGGTTGGTGTACAT 60.271 52.381 0.00 0.00 37.80 2.29
4624 5111 2.158682 TCACAGGTTGGTGTACATGCTT 60.159 45.455 0.00 0.00 39.76 3.91
4979 5466 4.331168 GCTCATACAAGTGAGTTGACCATC 59.669 45.833 7.07 0.00 45.80 3.51
5087 5574 8.982723 ACCTGTCTAATCACACATATAAAGAGT 58.017 33.333 0.00 0.00 0.00 3.24
5088 5575 9.254133 CCTGTCTAATCACACATATAAAGAGTG 57.746 37.037 0.00 0.00 39.12 3.51
5210 5697 1.372582 GCGATGGATCTGTTCTTGCA 58.627 50.000 0.00 0.00 0.00 4.08
5541 6028 3.644966 ACTTCCATGAAGGCGGAATAA 57.355 42.857 8.56 0.00 43.25 1.40
5617 6104 4.553668 GGTAACCCAGGCCGAATC 57.446 61.111 0.00 0.00 0.00 2.52
5618 6105 1.523032 GGTAACCCAGGCCGAATCG 60.523 63.158 0.00 0.00 0.00 3.34
5628 6115 4.096003 CCGAATCGGGCCACCACT 62.096 66.667 14.91 0.00 44.15 4.00
5629 6116 2.046314 CGAATCGGGCCACCACTT 60.046 61.111 4.39 0.00 36.13 3.16
5630 6117 2.398554 CGAATCGGGCCACCACTTG 61.399 63.158 4.39 0.00 36.13 3.16
5638 6125 3.506808 CCACCACTTGGGATGGGA 58.493 61.111 0.00 0.00 42.54 4.37
5639 6126 1.773635 CCACCACTTGGGATGGGAA 59.226 57.895 0.00 0.00 42.54 3.97
5640 6127 0.336048 CCACCACTTGGGATGGGAAT 59.664 55.000 0.00 0.00 42.54 3.01
5641 6128 1.477553 CACCACTTGGGATGGGAATG 58.522 55.000 0.00 0.00 41.97 2.67
5642 6129 0.336048 ACCACTTGGGATGGGAATGG 59.664 55.000 0.00 0.00 41.97 3.16
5643 6130 1.044790 CCACTTGGGATGGGAATGGC 61.045 60.000 0.00 0.00 40.01 4.40
5644 6131 0.032813 CACTTGGGATGGGAATGGCT 60.033 55.000 0.00 0.00 0.00 4.75
5645 6132 0.259938 ACTTGGGATGGGAATGGCTC 59.740 55.000 0.00 0.00 0.00 4.70
5646 6133 0.259647 CTTGGGATGGGAATGGCTCA 59.740 55.000 0.00 0.00 0.00 4.26
5647 6134 0.259647 TTGGGATGGGAATGGCTCAG 59.740 55.000 0.00 0.00 0.00 3.35
5648 6135 1.530183 GGGATGGGAATGGCTCAGC 60.530 63.158 0.00 0.00 30.82 4.26
5658 6145 2.441532 GGCTCAGCCCACATGCAT 60.442 61.111 3.37 0.00 44.06 3.96
5659 6146 2.487532 GGCTCAGCCCACATGCATC 61.488 63.158 3.37 0.00 44.06 3.91
5660 6147 1.751544 GCTCAGCCCACATGCATCA 60.752 57.895 0.00 0.00 0.00 3.07
5661 6148 1.107538 GCTCAGCCCACATGCATCAT 61.108 55.000 0.00 0.00 0.00 2.45
5662 6149 1.399714 CTCAGCCCACATGCATCATT 58.600 50.000 0.00 0.00 0.00 2.57
5663 6150 1.754803 CTCAGCCCACATGCATCATTT 59.245 47.619 0.00 0.00 0.00 2.32
5664 6151 1.478916 TCAGCCCACATGCATCATTTG 59.521 47.619 0.00 0.00 0.00 2.32
5665 6152 1.478916 CAGCCCACATGCATCATTTGA 59.521 47.619 0.00 0.00 0.00 2.69
5666 6153 2.102420 CAGCCCACATGCATCATTTGAT 59.898 45.455 0.00 0.00 34.56 2.57
5679 6166 5.578005 ATCATTTGATGAAAGCACTCCAG 57.422 39.130 0.00 0.00 43.50 3.86
5680 6167 4.401022 TCATTTGATGAAAGCACTCCAGT 58.599 39.130 0.00 0.00 36.11 4.00
5681 6168 4.456911 TCATTTGATGAAAGCACTCCAGTC 59.543 41.667 0.00 0.00 36.11 3.51
5682 6169 2.479566 TGATGAAAGCACTCCAGTCC 57.520 50.000 0.00 0.00 0.00 3.85
5683 6170 1.699083 TGATGAAAGCACTCCAGTCCA 59.301 47.619 0.00 0.00 0.00 4.02
5684 6171 2.289882 TGATGAAAGCACTCCAGTCCAG 60.290 50.000 0.00 0.00 0.00 3.86
5685 6172 1.131638 TGAAAGCACTCCAGTCCAGT 58.868 50.000 0.00 0.00 0.00 4.00
5686 6173 1.070758 TGAAAGCACTCCAGTCCAGTC 59.929 52.381 0.00 0.00 0.00 3.51
5687 6174 0.034059 AAAGCACTCCAGTCCAGTCG 59.966 55.000 0.00 0.00 0.00 4.18
5688 6175 2.433318 GCACTCCAGTCCAGTCGC 60.433 66.667 0.00 0.00 0.00 5.19
5689 6176 2.262915 CACTCCAGTCCAGTCGCC 59.737 66.667 0.00 0.00 0.00 5.54
5690 6177 2.118513 ACTCCAGTCCAGTCGCCT 59.881 61.111 0.00 0.00 0.00 5.52
5691 6178 1.979693 ACTCCAGTCCAGTCGCCTC 60.980 63.158 0.00 0.00 0.00 4.70
5692 6179 2.680352 TCCAGTCCAGTCGCCTCC 60.680 66.667 0.00 0.00 0.00 4.30
5693 6180 4.135153 CCAGTCCAGTCGCCTCCG 62.135 72.222 0.00 0.00 0.00 4.63
5694 6181 3.062466 CAGTCCAGTCGCCTCCGA 61.062 66.667 0.00 0.00 42.01 4.55
5695 6182 2.043852 AGTCCAGTCGCCTCCGAT 60.044 61.111 0.00 0.00 46.38 4.18
5696 6183 2.122167 AGTCCAGTCGCCTCCGATC 61.122 63.158 0.00 0.00 46.38 3.69
5697 6184 2.044352 TCCAGTCGCCTCCGATCA 60.044 61.111 0.00 0.00 46.38 2.92
5698 6185 2.121538 TCCAGTCGCCTCCGATCAG 61.122 63.158 0.00 0.00 46.38 2.90
5699 6186 2.418910 CCAGTCGCCTCCGATCAGT 61.419 63.158 0.00 0.00 46.38 3.41
5700 6187 1.226802 CAGTCGCCTCCGATCAGTG 60.227 63.158 0.00 0.00 46.38 3.66
5701 6188 2.105128 GTCGCCTCCGATCAGTGG 59.895 66.667 0.00 0.00 46.38 4.00
5702 6189 3.838271 TCGCCTCCGATCAGTGGC 61.838 66.667 11.30 11.30 38.82 5.01
5703 6190 3.842923 CGCCTCCGATCAGTGGCT 61.843 66.667 17.56 0.00 42.90 4.75
5704 6191 2.586792 GCCTCCGATCAGTGGCTT 59.413 61.111 13.62 0.00 41.92 4.35
5705 6192 1.817099 GCCTCCGATCAGTGGCTTG 60.817 63.158 13.62 0.00 41.92 4.01
5706 6193 1.599047 CCTCCGATCAGTGGCTTGT 59.401 57.895 0.00 0.00 0.00 3.16
5707 6194 0.460987 CCTCCGATCAGTGGCTTGTC 60.461 60.000 0.00 0.00 0.00 3.18
5708 6195 0.247460 CTCCGATCAGTGGCTTGTCA 59.753 55.000 0.00 0.00 0.00 3.58
5709 6196 0.684535 TCCGATCAGTGGCTTGTCAA 59.315 50.000 0.00 0.00 0.00 3.18
5710 6197 0.798776 CCGATCAGTGGCTTGTCAAC 59.201 55.000 0.00 0.00 0.00 3.18
5711 6198 0.798776 CGATCAGTGGCTTGTCAACC 59.201 55.000 0.00 0.00 0.00 3.77
5712 6199 1.877680 CGATCAGTGGCTTGTCAACCA 60.878 52.381 0.00 3.58 0.00 3.67
5716 6203 2.203280 TGGCTTGTCAACCACCGG 60.203 61.111 0.00 0.00 0.00 5.28
5717 6204 2.112297 GGCTTGTCAACCACCGGA 59.888 61.111 9.46 0.00 0.00 5.14
5718 6205 2.258726 GGCTTGTCAACCACCGGAC 61.259 63.158 9.46 0.00 34.63 4.79
5719 6206 2.258726 GCTTGTCAACCACCGGACC 61.259 63.158 9.46 0.00 33.09 4.46
5720 6207 1.959226 CTTGTCAACCACCGGACCG 60.959 63.158 9.46 6.99 33.09 4.79
5721 6208 2.653953 CTTGTCAACCACCGGACCGT 62.654 60.000 9.46 0.00 33.09 4.83
5722 6209 1.398174 TTGTCAACCACCGGACCGTA 61.398 55.000 9.46 0.00 33.09 4.02
5723 6210 1.080298 GTCAACCACCGGACCGTAG 60.080 63.158 9.46 4.41 0.00 3.51
5724 6211 2.433664 CAACCACCGGACCGTAGC 60.434 66.667 9.46 0.00 0.00 3.58
5725 6212 2.602568 AACCACCGGACCGTAGCT 60.603 61.111 9.46 0.00 0.00 3.32
5726 6213 2.643232 AACCACCGGACCGTAGCTC 61.643 63.158 9.46 0.00 0.00 4.09
5727 6214 3.834799 CCACCGGACCGTAGCTCC 61.835 72.222 9.46 0.00 0.00 4.70
5728 6215 2.754658 CACCGGACCGTAGCTCCT 60.755 66.667 9.46 0.00 0.00 3.69
5729 6216 2.439883 ACCGGACCGTAGCTCCTC 60.440 66.667 9.46 0.00 0.00 3.71
5730 6217 2.439701 CCGGACCGTAGCTCCTCA 60.440 66.667 13.94 0.00 0.00 3.86
5731 6218 2.772691 CCGGACCGTAGCTCCTCAC 61.773 68.421 13.94 0.00 0.00 3.51
5732 6219 2.772691 CGGACCGTAGCTCCTCACC 61.773 68.421 5.48 0.00 0.00 4.02
5733 6220 2.772691 GGACCGTAGCTCCTCACCG 61.773 68.421 0.00 0.00 0.00 4.94
5734 6221 1.748122 GACCGTAGCTCCTCACCGA 60.748 63.158 0.00 0.00 0.00 4.69
5735 6222 1.303888 ACCGTAGCTCCTCACCGAA 60.304 57.895 0.00 0.00 0.00 4.30
5736 6223 0.683504 ACCGTAGCTCCTCACCGAAT 60.684 55.000 0.00 0.00 0.00 3.34
5737 6224 0.249073 CCGTAGCTCCTCACCGAATG 60.249 60.000 0.00 0.00 0.00 2.67
5738 6225 0.872021 CGTAGCTCCTCACCGAATGC 60.872 60.000 0.00 0.00 0.00 3.56
5739 6226 0.530870 GTAGCTCCTCACCGAATGCC 60.531 60.000 0.00 0.00 0.00 4.40
5740 6227 1.686325 TAGCTCCTCACCGAATGCCC 61.686 60.000 0.00 0.00 0.00 5.36
5741 6228 2.190578 CTCCTCACCGAATGCCCC 59.809 66.667 0.00 0.00 0.00 5.80
5742 6229 2.285368 TCCTCACCGAATGCCCCT 60.285 61.111 0.00 0.00 0.00 4.79
5743 6230 2.124570 CCTCACCGAATGCCCCTG 60.125 66.667 0.00 0.00 0.00 4.45
5744 6231 2.825836 CTCACCGAATGCCCCTGC 60.826 66.667 0.00 0.00 38.26 4.85
5745 6232 4.776322 TCACCGAATGCCCCTGCG 62.776 66.667 0.00 0.00 41.78 5.18
5898 6385 9.956720 GCACGACTATTACTCCTTTAATAACTA 57.043 33.333 0.00 0.00 0.00 2.24
5917 6404 4.040755 ACTAAGGCCAGTATGACCATTCT 58.959 43.478 5.01 0.00 39.69 2.40
6018 6505 4.925054 GTGGTTCATGATCCAATTGTGTTG 59.075 41.667 23.99 0.00 35.38 3.33
6147 6636 8.834465 GCACATTTGATCTAGTTCTCATGTTAT 58.166 33.333 12.30 0.00 0.00 1.89
6289 6778 5.193663 TCGATGCAGAAAATTCAAAACCA 57.806 34.783 0.00 0.00 0.00 3.67
6428 6919 8.110002 CACTTTAAAAAGTTGCAGCTTTGTAAG 58.890 33.333 27.30 26.46 46.52 2.34
6429 6920 7.277760 ACTTTAAAAAGTTGCAGCTTTGTAAGG 59.722 33.333 29.99 29.99 46.52 2.69
6430 6921 5.337578 AAAAAGTTGCAGCTTTGTAAGGA 57.662 34.783 26.42 0.00 38.54 3.36
6431 6922 5.535753 AAAAGTTGCAGCTTTGTAAGGAT 57.464 34.783 26.42 8.58 38.54 3.24
6432 6923 6.648879 AAAAGTTGCAGCTTTGTAAGGATA 57.351 33.333 26.42 0.00 38.54 2.59
6433 6924 5.886960 AAGTTGCAGCTTTGTAAGGATAG 57.113 39.130 10.35 0.00 0.00 2.08
6434 6925 4.265073 AGTTGCAGCTTTGTAAGGATAGG 58.735 43.478 0.00 0.00 0.00 2.57
6435 6926 4.010349 GTTGCAGCTTTGTAAGGATAGGT 58.990 43.478 0.00 0.00 0.00 3.08
6436 6927 4.301072 TGCAGCTTTGTAAGGATAGGTT 57.699 40.909 0.00 0.00 0.00 3.50
6437 6928 4.009675 TGCAGCTTTGTAAGGATAGGTTG 58.990 43.478 0.00 0.00 0.00 3.77
6438 6929 3.378427 GCAGCTTTGTAAGGATAGGTTGG 59.622 47.826 0.00 0.00 0.00 3.77
6439 6930 3.947834 CAGCTTTGTAAGGATAGGTTGGG 59.052 47.826 0.00 0.00 0.00 4.12
6440 6931 3.850173 AGCTTTGTAAGGATAGGTTGGGA 59.150 43.478 0.00 0.00 0.00 4.37
6441 6932 4.478686 AGCTTTGTAAGGATAGGTTGGGAT 59.521 41.667 0.00 0.00 0.00 3.85
6442 6933 4.822350 GCTTTGTAAGGATAGGTTGGGATC 59.178 45.833 0.00 0.00 0.00 3.36
6443 6934 5.631481 GCTTTGTAAGGATAGGTTGGGATCA 60.631 44.000 0.00 0.00 0.00 2.92
6444 6935 6.590656 TTTGTAAGGATAGGTTGGGATCAT 57.409 37.500 0.00 0.00 0.00 2.45
6445 6936 5.825593 TGTAAGGATAGGTTGGGATCATC 57.174 43.478 0.00 0.00 0.00 2.92
6446 6937 4.597507 TGTAAGGATAGGTTGGGATCATCC 59.402 45.833 0.00 0.00 36.25 3.51
6459 6950 2.057137 ATCATCCCGTGATTTGGTGG 57.943 50.000 0.00 0.00 45.25 4.61
6460 6951 0.988063 TCATCCCGTGATTTGGTGGA 59.012 50.000 0.00 0.00 0.00 4.02
6461 6952 1.563879 TCATCCCGTGATTTGGTGGAT 59.436 47.619 0.00 0.00 36.26 3.41
6462 6953 1.677576 CATCCCGTGATTTGGTGGATG 59.322 52.381 0.00 0.00 44.53 3.51
6463 6954 0.034574 TCCCGTGATTTGGTGGATGG 60.035 55.000 0.00 0.00 0.00 3.51
6464 6955 1.037030 CCCGTGATTTGGTGGATGGG 61.037 60.000 0.00 0.00 0.00 4.00
6465 6956 1.666209 CCGTGATTTGGTGGATGGGC 61.666 60.000 0.00 0.00 0.00 5.36
6466 6957 1.666209 CGTGATTTGGTGGATGGGCC 61.666 60.000 0.00 0.00 37.10 5.80
6467 6958 1.001503 TGATTTGGTGGATGGGCCC 59.998 57.895 17.59 17.59 34.97 5.80
6499 7078 5.916661 TTTTCGACTAGGCTTATGAGAGT 57.083 39.130 0.00 0.00 0.00 3.24
6585 7164 7.535139 AGTTAACATTAAATGGTCCATTCACG 58.465 34.615 17.60 9.15 32.43 4.35
6599 7178 3.403038 CATTCACGGTCTTGTTCCTCTT 58.597 45.455 0.00 0.00 0.00 2.85
6615 7194 4.362677 TCCTCTTAAGGCTCTAACCACAT 58.637 43.478 1.85 0.00 43.02 3.21
6645 7224 3.498397 GTCCATTGTGTGTTGTCTAGGTG 59.502 47.826 0.00 0.00 0.00 4.00
6692 7271 7.575414 TCTTCTCCACTGAATGTATCTACTC 57.425 40.000 0.00 0.00 0.00 2.59
6944 7526 4.109050 GAGCACACGGAAAAACATTCAAA 58.891 39.130 0.00 0.00 0.00 2.69
6946 7528 3.301515 GCACACGGAAAAACATTCAAACG 60.302 43.478 0.00 0.00 0.00 3.60
7018 7600 5.345741 GCGCACTTGATTGTTAAATGTCATT 59.654 36.000 0.30 0.00 0.00 2.57
7086 7670 6.691508 GGTGAAAGCAATTTTGACCTATTCT 58.308 36.000 1.75 0.00 46.05 2.40
7145 7729 1.967319 TCTCTGTTGTTTCAGCACCC 58.033 50.000 0.00 0.00 35.63 4.61
7259 7843 5.853936 TGGGAAACTATATTCACTGGATCG 58.146 41.667 0.00 0.00 33.76 3.69
7310 7894 3.243035 TGTGTTCTGTTTTCTTGGCATCG 60.243 43.478 0.00 0.00 0.00 3.84
7423 8009 1.298339 GTGCAAGCAAACGAACGCT 60.298 52.632 0.00 0.00 41.20 5.07
7465 8051 2.238646 ACGATTTATGCCCTGAAGACCA 59.761 45.455 0.00 0.00 0.00 4.02
7474 8060 2.027192 GCCCTGAAGACCACAGTATCAA 60.027 50.000 0.00 0.00 34.04 2.57
7490 8086 0.463654 TCAAGCTTGTCACGCAACCT 60.464 50.000 25.19 0.00 32.90 3.50
7512 8108 2.419021 GGTGGGTGATGGCAATGAAATG 60.419 50.000 0.00 0.00 0.00 2.32
7572 8168 4.876125 AGTAGTGTCAGTGAATCAGTGTG 58.124 43.478 16.70 0.00 36.33 3.82
7674 8270 1.157870 AAGAGTTTGTGGCACGACGG 61.158 55.000 13.77 0.00 0.00 4.79
7675 8271 1.593209 GAGTTTGTGGCACGACGGA 60.593 57.895 13.77 0.00 0.00 4.69
7692 8288 5.047847 CGACGGAACAATCATAACCTGTAT 58.952 41.667 0.00 0.00 0.00 2.29
7849 8449 0.320073 ACAAACATGTGCATGCAGCC 60.320 50.000 23.41 11.34 44.83 4.85
7878 8478 5.984323 ACGTAAACCATTTTTGGCGTATTTT 59.016 32.000 0.00 0.00 30.19 1.82
7879 8479 7.144000 ACGTAAACCATTTTTGGCGTATTTTA 58.856 30.769 0.00 0.00 30.19 1.52
7880 8480 7.650903 ACGTAAACCATTTTTGGCGTATTTTAA 59.349 29.630 0.00 0.00 30.19 1.52
7918 8595 9.624697 GCTTCACAAATTAGTACATGAAATTCA 57.375 29.630 0.00 0.00 0.00 2.57
7923 8600 9.295825 ACAAATTAGTACATGAAATTCAGGTCA 57.704 29.630 16.80 1.40 40.86 4.02
7939 8616 3.748568 CAGGTCAAAGTCCTTTACTGCTC 59.251 47.826 0.00 0.00 38.88 4.26
8012 8690 5.871524 TCACCAAATCTCAAATTCTCGAGAG 59.128 40.000 15.94 4.04 41.39 3.20
8025 8703 1.079543 CGAGAGGGCACTTGGACAG 60.080 63.158 0.00 0.00 0.00 3.51
8078 8756 3.469008 TTGACATTCTCGACCAAGTGT 57.531 42.857 0.00 0.00 0.00 3.55
8119 8797 4.767255 CAGGCTGCGGTGGGACTC 62.767 72.222 0.00 0.00 0.00 3.36
8121 8799 4.101448 GGCTGCGGTGGGACTCAT 62.101 66.667 0.00 0.00 0.00 2.90
8122 8800 2.512515 GCTGCGGTGGGACTCATC 60.513 66.667 0.00 0.00 0.00 2.92
8142 8820 1.996070 GACCCATCCCACCTAAGGCC 61.996 65.000 0.00 0.00 0.00 5.19
8174 8852 4.429505 TCTTATGGAGATGATACCCAGGG 58.570 47.826 2.85 2.85 32.90 4.45
8186 8864 2.045926 CCAGGGAAAGAGGCCACG 60.046 66.667 5.01 0.00 0.00 4.94
8207 8885 0.794605 GGTGAGAATTTTCTGCGCGC 60.795 55.000 27.26 27.26 37.73 6.86
8275 8977 1.064946 CACGAGATGACGGGAGAGC 59.935 63.158 0.00 0.00 39.16 4.09
8281 8983 1.215673 AGATGACGGGAGAGCTAGGAA 59.784 52.381 0.00 0.00 0.00 3.36
8285 8987 2.312390 GACGGGAGAGCTAGGAATTCT 58.688 52.381 5.23 0.00 0.00 2.40
8366 9068 2.032681 GCACTCCCACAGTCCCAC 59.967 66.667 0.00 0.00 30.26 4.61
8372 9074 0.490017 TCCCACAGTCCCACTCCTTA 59.510 55.000 0.00 0.00 0.00 2.69
8373 9075 1.132657 TCCCACAGTCCCACTCCTTAA 60.133 52.381 0.00 0.00 0.00 1.85
8374 9076 1.003233 CCCACAGTCCCACTCCTTAAC 59.997 57.143 0.00 0.00 0.00 2.01
8375 9077 1.003233 CCACAGTCCCACTCCTTAACC 59.997 57.143 0.00 0.00 0.00 2.85
8376 9078 1.697432 CACAGTCCCACTCCTTAACCA 59.303 52.381 0.00 0.00 0.00 3.67
8377 9079 2.105821 CACAGTCCCACTCCTTAACCAA 59.894 50.000 0.00 0.00 0.00 3.67
8378 9080 2.781174 ACAGTCCCACTCCTTAACCAAA 59.219 45.455 0.00 0.00 0.00 3.28
8379 9081 3.397955 ACAGTCCCACTCCTTAACCAAAT 59.602 43.478 0.00 0.00 0.00 2.32
8380 9082 3.758554 CAGTCCCACTCCTTAACCAAATG 59.241 47.826 0.00 0.00 0.00 2.32
8381 9083 3.397955 AGTCCCACTCCTTAACCAAATGT 59.602 43.478 0.00 0.00 0.00 2.71
8382 9084 3.756963 GTCCCACTCCTTAACCAAATGTC 59.243 47.826 0.00 0.00 0.00 3.06
8383 9085 3.396276 TCCCACTCCTTAACCAAATGTCA 59.604 43.478 0.00 0.00 0.00 3.58
8384 9086 3.506067 CCCACTCCTTAACCAAATGTCAC 59.494 47.826 0.00 0.00 0.00 3.67
8385 9087 3.506067 CCACTCCTTAACCAAATGTCACC 59.494 47.826 0.00 0.00 0.00 4.02
8386 9088 3.506067 CACTCCTTAACCAAATGTCACCC 59.494 47.826 0.00 0.00 0.00 4.61
8387 9089 3.397955 ACTCCTTAACCAAATGTCACCCT 59.602 43.478 0.00 0.00 0.00 4.34
8388 9090 3.758554 CTCCTTAACCAAATGTCACCCTG 59.241 47.826 0.00 0.00 0.00 4.45
8389 9091 2.825532 CCTTAACCAAATGTCACCCTGG 59.174 50.000 0.00 0.00 34.95 4.45
8390 9092 1.917872 TAACCAAATGTCACCCTGGC 58.082 50.000 0.00 0.00 31.74 4.85
8391 9093 0.105760 AACCAAATGTCACCCTGGCA 60.106 50.000 0.00 0.00 35.91 4.92
8392 9094 0.105760 ACCAAATGTCACCCTGGCAA 60.106 50.000 0.00 0.00 34.67 4.52
8471 9173 1.693606 AGTTTCCCCTGTTGCCAAATG 59.306 47.619 0.00 0.00 0.00 2.32
8477 9179 1.186917 CCTGTTGCCAAATGAGCCCA 61.187 55.000 0.00 0.00 0.00 5.36
8478 9180 0.245539 CTGTTGCCAAATGAGCCCAG 59.754 55.000 0.00 0.00 0.00 4.45
8479 9181 0.469705 TGTTGCCAAATGAGCCCAGT 60.470 50.000 0.00 0.00 0.00 4.00
8525 9644 5.292589 CACTGCAAAATTTTGATGGGCTATC 59.707 40.000 30.40 12.39 40.55 2.08
8527 9646 4.470664 TGCAAAATTTTGATGGGCTATCCT 59.529 37.500 30.40 0.00 40.55 3.24
8538 9657 3.949430 TGGGCTATCCTAGTTAACCCAT 58.051 45.455 0.88 0.00 40.90 4.00
8572 9691 0.474614 GCCCACTTCTTCTATCCCCC 59.525 60.000 0.00 0.00 0.00 5.40
8588 9707 1.272807 CCCCGGTTAGTTTCCTGAGA 58.727 55.000 0.00 0.00 0.00 3.27
8652 9771 6.974622 CACATGAGCTCGCCTTTAAAAATATT 59.025 34.615 9.64 0.00 0.00 1.28
8705 9824 6.251376 GCTGTGCTTTTATAAAAGGTTCATCG 59.749 38.462 30.00 18.04 44.24 3.84
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
259 261 8.477419 TTCTTTTCTTCTTTGTTGGGTCATAT 57.523 30.769 0.00 0.00 0.00 1.78
266 268 7.966204 TCGTAGTTTTCTTTTCTTCTTTGTTGG 59.034 33.333 0.00 0.00 0.00 3.77
283 285 7.561556 CGAAGACATAGTTGTTTCGTAGTTTT 58.438 34.615 11.61 0.00 39.18 2.43
356 358 8.438373 ACAATGATGGTCTCTGAAGATATTCAT 58.562 33.333 2.71 0.00 33.08 2.57
451 453 4.937620 GTGAGAATTGCAGGATAACACAGA 59.062 41.667 0.00 0.00 0.00 3.41
533 535 3.005472 ACGTGTGTAAGTGCATCTAGTGT 59.995 43.478 0.00 0.00 0.00 3.55
552 554 5.766150 TCATGAATTTTCACAAGGAACGT 57.234 34.783 0.00 0.00 40.49 3.99
553 555 7.642071 AAATCATGAATTTTCACAAGGAACG 57.358 32.000 0.00 0.00 40.49 3.95
593 595 4.646492 ACATCCTAAATGCTCCCATGTTTC 59.354 41.667 0.00 0.00 0.00 2.78
594 596 4.403432 CACATCCTAAATGCTCCCATGTTT 59.597 41.667 0.00 0.00 0.00 2.83
597 599 2.889045 CCACATCCTAAATGCTCCCATG 59.111 50.000 0.00 0.00 0.00 3.66
598 600 2.515429 ACCACATCCTAAATGCTCCCAT 59.485 45.455 0.00 0.00 0.00 4.00
599 601 1.922447 ACCACATCCTAAATGCTCCCA 59.078 47.619 0.00 0.00 0.00 4.37
600 602 2.736670 ACCACATCCTAAATGCTCCC 57.263 50.000 0.00 0.00 0.00 4.30
601 603 4.757149 GTGATACCACATCCTAAATGCTCC 59.243 45.833 0.00 0.00 42.72 4.70
616 618 5.496556 CACACCTTAAATCCAGTGATACCA 58.503 41.667 0.00 0.00 34.33 3.25
667 669 3.129287 CACACCTTAAATGCTCCCATGAC 59.871 47.826 0.00 0.00 0.00 3.06
737 739 4.672409 TGTTACAGACTGATATGTCGCAG 58.328 43.478 10.08 0.00 41.47 5.18
738 740 4.712122 TGTTACAGACTGATATGTCGCA 57.288 40.909 10.08 0.00 41.47 5.10
739 741 4.445718 CCATGTTACAGACTGATATGTCGC 59.554 45.833 10.08 0.00 41.47 5.19
740 742 5.687730 GTCCATGTTACAGACTGATATGTCG 59.312 44.000 10.08 0.00 41.47 4.35
741 743 6.810911 AGTCCATGTTACAGACTGATATGTC 58.189 40.000 10.08 4.22 39.36 3.06
797 832 1.426621 CATCGTGCTGTCATGTGGC 59.573 57.895 0.00 0.00 0.00 5.01
883 918 1.770294 AACCCGCTTCAAGTTTTGGA 58.230 45.000 0.00 0.00 0.00 3.53
918 953 2.333581 GGTTGACGGGTTTTGCCG 59.666 61.111 0.00 0.00 38.44 5.69
1064 1107 1.683441 CCGGTTTGGCTAGGGTTCT 59.317 57.895 0.00 0.00 0.00 3.01
1540 1594 2.554142 CATAAGACAATGGCTCGAGCA 58.446 47.619 36.27 23.25 44.36 4.26
1552 1606 4.551702 TCAACAGGCTAAGCATAAGACA 57.448 40.909 0.00 0.00 0.00 3.41
1563 1617 4.021456 TCTCGACTTCAAATCAACAGGCTA 60.021 41.667 0.00 0.00 0.00 3.93
1587 1641 0.606401 CATTAGCCCCGCCTATGGTG 60.606 60.000 0.00 0.00 0.00 4.17
1846 1903 4.019051 TCTCATCTGGACAATGGAATGTGT 60.019 41.667 0.00 0.00 32.57 3.72
1848 1905 4.849813 TCTCATCTGGACAATGGAATGT 57.150 40.909 0.00 0.00 35.90 2.71
1905 1962 9.912634 TCTGTTTGGATAAAAGAAAATGATGAC 57.087 29.630 0.00 0.00 0.00 3.06
1910 1967 7.114811 CCGTGTCTGTTTGGATAAAAGAAAATG 59.885 37.037 0.00 0.00 0.00 2.32
2078 2135 2.045536 GAAGGCCAGGGTGCTCAG 60.046 66.667 5.01 0.00 0.00 3.35
2144 2201 4.844349 TCCCAAAACCTCTCCAGATTAG 57.156 45.455 0.00 0.00 0.00 1.73
2164 2221 2.693074 TGTTCCAGAAAACTTGGCCTTC 59.307 45.455 3.32 0.00 35.62 3.46
2585 2642 8.768397 ACACTGAAATATCATACAGGAGGTAAA 58.232 33.333 0.00 0.00 35.14 2.01
2616 2673 5.757808 GGAGAAATAGATCTCAGGTTCTTGC 59.242 44.000 0.00 0.00 46.24 4.01
2672 2729 2.289882 TGCCAGAAGACCAGATTCACAG 60.290 50.000 0.00 0.00 0.00 3.66
2685 2742 3.185246 AGGATTACGACATGCCAGAAG 57.815 47.619 0.00 0.00 0.00 2.85
2956 3026 2.484264 AGCAGCAACACGATAAAAGGAC 59.516 45.455 0.00 0.00 0.00 3.85
2984 3054 5.732331 ATTCATTGGAATGGAGGGAGTAA 57.268 39.130 0.00 0.00 42.10 2.24
3062 3132 8.952278 GTACAATCTTTGTCACATATAACCCAA 58.048 33.333 0.00 0.00 44.12 4.12
3233 3316 4.753610 GTGAACCAACCTTCTAACAGTACC 59.246 45.833 0.00 0.00 0.00 3.34
3601 3696 6.418057 TGCACAAACCTTAATTCCAGAAAT 57.582 33.333 0.00 0.00 0.00 2.17
3807 4260 1.096416 ATCTCGTCGACTCAAGTCCC 58.904 55.000 14.70 0.00 41.86 4.46
4175 4628 3.009033 ACAGCAGACTATTGGGTGCTTTA 59.991 43.478 3.37 0.00 43.80 1.85
4400 4886 7.823745 AGAAAGGTGTCAAACTGTGAATAAT 57.176 32.000 0.00 0.00 38.23 1.28
4401 4887 7.639113 AAGAAAGGTGTCAAACTGTGAATAA 57.361 32.000 0.00 0.00 38.23 1.40
4540 5027 4.631131 GAGACCCTTGGTTCCAAAATTTG 58.369 43.478 5.76 0.00 35.25 2.32
4901 5388 4.742438 TTCCGTCACTTGATTGTAAAGC 57.258 40.909 0.00 0.00 0.00 3.51
5107 5594 9.176460 TCATCTGCATCATTTAACAAGTCAATA 57.824 29.630 0.00 0.00 0.00 1.90
5210 5697 1.373999 GACGCTCTCAGCTGCAACT 60.374 57.895 9.47 0.00 39.60 3.16
5541 6028 4.715713 AGCATTCATCATGTGCTAGATGT 58.284 39.130 6.00 0.00 46.54 3.06
5612 6099 2.046314 AAGTGGTGGCCCGATTCG 60.046 61.111 0.00 0.00 0.00 3.34
5613 6100 2.046285 CCAAGTGGTGGCCCGATTC 61.046 63.158 0.00 0.00 41.72 2.52
5614 6101 2.035626 CCAAGTGGTGGCCCGATT 59.964 61.111 0.00 0.00 41.72 3.34
5622 6109 1.477553 CATTCCCATCCCAAGTGGTG 58.522 55.000 0.00 0.00 34.87 4.17
5623 6110 0.336048 CCATTCCCATCCCAAGTGGT 59.664 55.000 0.00 0.00 34.87 4.16
5624 6111 1.044790 GCCATTCCCATCCCAAGTGG 61.045 60.000 0.00 0.00 36.47 4.00
5625 6112 0.032813 AGCCATTCCCATCCCAAGTG 60.033 55.000 0.00 0.00 0.00 3.16
5626 6113 0.259938 GAGCCATTCCCATCCCAAGT 59.740 55.000 0.00 0.00 0.00 3.16
5627 6114 0.259647 TGAGCCATTCCCATCCCAAG 59.740 55.000 0.00 0.00 0.00 3.61
5628 6115 0.259647 CTGAGCCATTCCCATCCCAA 59.740 55.000 0.00 0.00 0.00 4.12
5629 6116 1.925120 CTGAGCCATTCCCATCCCA 59.075 57.895 0.00 0.00 0.00 4.37
5630 6117 1.530183 GCTGAGCCATTCCCATCCC 60.530 63.158 0.00 0.00 0.00 3.85
5631 6118 4.170947 GCTGAGCCATTCCCATCC 57.829 61.111 0.00 0.00 0.00 3.51
5642 6129 1.107538 ATGATGCATGTGGGCTGAGC 61.108 55.000 2.46 0.00 34.04 4.26
5643 6130 1.399714 AATGATGCATGTGGGCTGAG 58.600 50.000 2.46 0.00 34.04 3.35
5644 6131 1.478916 CAAATGATGCATGTGGGCTGA 59.521 47.619 2.46 0.00 34.04 4.26
5645 6132 1.478916 TCAAATGATGCATGTGGGCTG 59.521 47.619 2.46 0.00 30.57 4.85
5646 6133 1.855295 TCAAATGATGCATGTGGGCT 58.145 45.000 2.46 0.00 30.57 5.19
5647 6134 2.479837 CATCAAATGATGCATGTGGGC 58.520 47.619 2.46 0.00 44.44 5.36
5656 6143 9.695217 GGACTGGAGTGCTTTCATCAAATGATG 62.695 44.444 15.65 15.65 41.72 3.07
5657 6144 5.014858 ACTGGAGTGCTTTCATCAAATGAT 58.985 37.500 0.00 0.00 39.39 2.45
5658 6145 4.401022 ACTGGAGTGCTTTCATCAAATGA 58.599 39.130 0.00 0.00 37.55 2.57
5659 6146 4.380233 GGACTGGAGTGCTTTCATCAAATG 60.380 45.833 0.00 0.00 33.32 2.32
5660 6147 3.760684 GGACTGGAGTGCTTTCATCAAAT 59.239 43.478 0.00 0.00 33.32 2.32
5661 6148 3.149196 GGACTGGAGTGCTTTCATCAAA 58.851 45.455 0.00 0.00 33.32 2.69
5662 6149 2.106338 TGGACTGGAGTGCTTTCATCAA 59.894 45.455 0.00 0.00 37.28 2.57
5663 6150 1.699083 TGGACTGGAGTGCTTTCATCA 59.301 47.619 0.00 0.00 37.28 3.07
5664 6151 2.289945 ACTGGACTGGAGTGCTTTCATC 60.290 50.000 0.00 0.00 37.28 2.92
5665 6152 1.701847 ACTGGACTGGAGTGCTTTCAT 59.298 47.619 0.00 0.00 37.28 2.57
5666 6153 1.070758 GACTGGACTGGAGTGCTTTCA 59.929 52.381 0.00 0.00 37.28 2.69
5667 6154 1.802069 GACTGGACTGGAGTGCTTTC 58.198 55.000 0.00 0.00 37.28 2.62
5668 6155 0.034059 CGACTGGACTGGAGTGCTTT 59.966 55.000 0.00 0.00 37.28 3.51
5669 6156 1.668294 CGACTGGACTGGAGTGCTT 59.332 57.895 0.00 0.00 37.28 3.91
5670 6157 2.936912 GCGACTGGACTGGAGTGCT 61.937 63.158 0.00 0.00 37.28 4.40
5671 6158 2.433318 GCGACTGGACTGGAGTGC 60.433 66.667 0.00 0.00 36.87 4.40
5672 6159 2.219325 GAGGCGACTGGACTGGAGTG 62.219 65.000 0.00 0.00 44.43 3.51
5673 6160 1.979693 GAGGCGACTGGACTGGAGT 60.980 63.158 0.00 0.00 44.43 3.85
5674 6161 2.716017 GGAGGCGACTGGACTGGAG 61.716 68.421 0.00 0.00 44.43 3.86
5675 6162 2.680352 GGAGGCGACTGGACTGGA 60.680 66.667 0.00 0.00 44.43 3.86
5676 6163 4.135153 CGGAGGCGACTGGACTGG 62.135 72.222 0.00 0.00 44.43 4.00
5677 6164 2.343163 GATCGGAGGCGACTGGACTG 62.343 65.000 0.00 0.00 44.43 3.51
5678 6165 2.043852 ATCGGAGGCGACTGGACT 60.044 61.111 0.00 0.00 44.43 3.85
5679 6166 2.343163 CTGATCGGAGGCGACTGGAC 62.343 65.000 0.00 0.00 44.43 4.02
5680 6167 2.044352 TGATCGGAGGCGACTGGA 60.044 61.111 0.00 0.00 44.43 3.86
5681 6168 2.415010 CTGATCGGAGGCGACTGG 59.585 66.667 0.00 0.00 44.43 4.00
5682 6169 1.226802 CACTGATCGGAGGCGACTG 60.227 63.158 9.00 0.00 44.43 3.51
5684 6171 2.105128 CCACTGATCGGAGGCGAC 59.895 66.667 9.00 0.00 0.00 5.19
5685 6172 3.838271 GCCACTGATCGGAGGCGA 61.838 66.667 24.65 0.00 37.41 5.54
5688 6175 0.460987 GACAAGCCACTGATCGGAGG 60.461 60.000 13.31 13.31 0.00 4.30
5689 6176 0.247460 TGACAAGCCACTGATCGGAG 59.753 55.000 9.00 0.00 0.00 4.63
5690 6177 0.684535 TTGACAAGCCACTGATCGGA 59.315 50.000 9.00 0.00 0.00 4.55
5691 6178 0.798776 GTTGACAAGCCACTGATCGG 59.201 55.000 0.00 0.00 0.00 4.18
5692 6179 0.798776 GGTTGACAAGCCACTGATCG 59.201 55.000 6.08 0.00 0.00 3.69
5693 6180 1.896220 TGGTTGACAAGCCACTGATC 58.104 50.000 14.49 0.00 0.00 2.92
5699 6186 2.203280 CCGGTGGTTGACAAGCCA 60.203 61.111 14.49 9.66 0.00 4.75
5700 6187 2.112297 TCCGGTGGTTGACAAGCC 59.888 61.111 14.49 7.28 0.00 4.35
5701 6188 2.258726 GGTCCGGTGGTTGACAAGC 61.259 63.158 10.46 10.46 33.09 4.01
5702 6189 1.959226 CGGTCCGGTGGTTGACAAG 60.959 63.158 2.34 0.00 33.09 3.16
5703 6190 1.398174 TACGGTCCGGTGGTTGACAA 61.398 55.000 17.28 0.00 33.09 3.18
5704 6191 1.808531 CTACGGTCCGGTGGTTGACA 61.809 60.000 17.28 0.00 33.09 3.58
5705 6192 1.080298 CTACGGTCCGGTGGTTGAC 60.080 63.158 17.28 0.00 0.00 3.18
5706 6193 2.934570 GCTACGGTCCGGTGGTTGA 61.935 63.158 17.28 0.00 0.00 3.18
5707 6194 2.433664 GCTACGGTCCGGTGGTTG 60.434 66.667 17.28 0.34 0.00 3.77
5708 6195 2.602568 AGCTACGGTCCGGTGGTT 60.603 61.111 17.28 0.03 0.00 3.67
5709 6196 3.066814 GAGCTACGGTCCGGTGGT 61.067 66.667 17.28 12.95 0.00 4.16
5710 6197 3.834799 GGAGCTACGGTCCGGTGG 61.835 72.222 17.28 6.14 40.45 4.61
5716 6203 1.310933 TTCGGTGAGGAGCTACGGTC 61.311 60.000 0.00 0.00 0.00 4.79
5717 6204 0.683504 ATTCGGTGAGGAGCTACGGT 60.684 55.000 0.00 0.00 0.00 4.83
5718 6205 0.249073 CATTCGGTGAGGAGCTACGG 60.249 60.000 0.00 0.00 0.00 4.02
5719 6206 0.872021 GCATTCGGTGAGGAGCTACG 60.872 60.000 0.00 0.00 0.00 3.51
5720 6207 0.530870 GGCATTCGGTGAGGAGCTAC 60.531 60.000 0.00 0.00 0.00 3.58
5721 6208 1.686325 GGGCATTCGGTGAGGAGCTA 61.686 60.000 0.00 0.00 0.00 3.32
5722 6209 2.586792 GGCATTCGGTGAGGAGCT 59.413 61.111 0.00 0.00 0.00 4.09
5723 6210 2.514824 GGGCATTCGGTGAGGAGC 60.515 66.667 0.00 0.00 0.00 4.70
5724 6211 2.190578 GGGGCATTCGGTGAGGAG 59.809 66.667 0.00 0.00 0.00 3.69
5725 6212 2.285368 AGGGGCATTCGGTGAGGA 60.285 61.111 0.00 0.00 0.00 3.71
5726 6213 2.124570 CAGGGGCATTCGGTGAGG 60.125 66.667 0.00 0.00 0.00 3.86
5727 6214 2.825836 GCAGGGGCATTCGGTGAG 60.826 66.667 0.00 0.00 40.72 3.51
5728 6215 4.776322 CGCAGGGGCATTCGGTGA 62.776 66.667 0.00 0.00 41.24 4.02
5730 6217 4.344865 AACGCAGGGGCATTCGGT 62.345 61.111 0.00 0.00 41.24 4.69
5731 6218 3.814268 CAACGCAGGGGCATTCGG 61.814 66.667 0.00 0.00 41.24 4.30
5732 6219 2.625823 AACAACGCAGGGGCATTCG 61.626 57.895 0.00 0.00 41.24 3.34
5733 6220 1.080569 CAACAACGCAGGGGCATTC 60.081 57.895 0.00 0.00 41.24 2.67
5734 6221 1.832167 ACAACAACGCAGGGGCATT 60.832 52.632 0.00 0.00 41.24 3.56
5735 6222 2.203480 ACAACAACGCAGGGGCAT 60.203 55.556 0.00 0.00 41.24 4.40
5736 6223 3.215568 CACAACAACGCAGGGGCA 61.216 61.111 0.00 0.00 41.24 5.36
5737 6224 3.977244 CCACAACAACGCAGGGGC 61.977 66.667 0.00 0.00 0.00 5.80
5738 6225 2.203280 TCCACAACAACGCAGGGG 60.203 61.111 0.00 0.00 0.00 4.79
5739 6226 1.101049 AACTCCACAACAACGCAGGG 61.101 55.000 0.00 0.00 0.00 4.45
5740 6227 0.307760 GAACTCCACAACAACGCAGG 59.692 55.000 0.00 0.00 0.00 4.85
5741 6228 1.003545 CAGAACTCCACAACAACGCAG 60.004 52.381 0.00 0.00 0.00 5.18
5742 6229 1.013596 CAGAACTCCACAACAACGCA 58.986 50.000 0.00 0.00 0.00 5.24
5743 6230 1.295792 TCAGAACTCCACAACAACGC 58.704 50.000 0.00 0.00 0.00 4.84
5744 6231 3.809832 AGATTCAGAACTCCACAACAACG 59.190 43.478 0.00 0.00 0.00 4.10
5745 6232 4.576463 ACAGATTCAGAACTCCACAACAAC 59.424 41.667 0.00 0.00 0.00 3.32
5746 6233 4.780815 ACAGATTCAGAACTCCACAACAA 58.219 39.130 0.00 0.00 0.00 2.83
5747 6234 4.422073 ACAGATTCAGAACTCCACAACA 57.578 40.909 0.00 0.00 0.00 3.33
5782 6269 2.911484 AGCAGCTTGGTACTTCTATGC 58.089 47.619 0.00 0.00 0.00 3.14
5784 6271 4.698575 GCTAAGCAGCTTGGTACTTCTAT 58.301 43.478 18.54 0.00 44.93 1.98
5898 6385 2.846206 TCAGAATGGTCATACTGGCCTT 59.154 45.455 3.32 0.00 44.07 4.35
5917 6404 6.040842 GCCCTTGAAGATAGCCAAATTTATCA 59.959 38.462 0.00 0.00 0.00 2.15
6018 6505 3.341823 ACTCCATCTGATGAAAGTGTGC 58.658 45.455 18.92 0.00 0.00 4.57
6032 6519 2.770164 AGTGTGGTGCTTACTCCATC 57.230 50.000 0.00 0.00 41.31 3.51
6356 6847 8.621532 TTTCACAAAGTCTATATTGCACTTCT 57.378 30.769 0.00 0.00 29.85 2.85
6441 6932 0.988063 TCCACCAAATCACGGGATGA 59.012 50.000 0.00 0.00 43.13 2.92
6442 6933 1.677576 CATCCACCAAATCACGGGATG 59.322 52.381 0.00 0.00 46.24 3.51
6443 6934 1.410083 CCATCCACCAAATCACGGGAT 60.410 52.381 0.00 0.00 38.87 3.85
6444 6935 0.034574 CCATCCACCAAATCACGGGA 60.035 55.000 0.00 0.00 0.00 5.14
6445 6936 1.037030 CCCATCCACCAAATCACGGG 61.037 60.000 0.00 0.00 0.00 5.28
6446 6937 1.666209 GCCCATCCACCAAATCACGG 61.666 60.000 0.00 0.00 0.00 4.94
6447 6938 1.666209 GGCCCATCCACCAAATCACG 61.666 60.000 0.00 0.00 34.01 4.35
6448 6939 1.329913 GGGCCCATCCACCAAATCAC 61.330 60.000 19.95 0.00 36.21 3.06
6449 6940 1.001503 GGGCCCATCCACCAAATCA 59.998 57.895 19.95 0.00 36.21 2.57
6450 6941 0.756815 GAGGGCCCATCCACCAAATC 60.757 60.000 27.56 4.28 36.21 2.17
6451 6942 1.311059 GAGGGCCCATCCACCAAAT 59.689 57.895 27.56 0.00 36.21 2.32
6452 6943 2.166346 TGAGGGCCCATCCACCAAA 61.166 57.895 27.56 0.00 36.21 3.28
6453 6944 2.534011 TGAGGGCCCATCCACCAA 60.534 61.111 27.56 0.00 36.21 3.67
6454 6945 3.338250 GTGAGGGCCCATCCACCA 61.338 66.667 27.56 8.72 36.21 4.17
6455 6946 3.338250 TGTGAGGGCCCATCCACC 61.338 66.667 27.56 13.10 36.21 4.61
6456 6947 2.273449 CTGTGAGGGCCCATCCAC 59.727 66.667 27.56 26.53 36.21 4.02
6457 6948 3.731728 GCTGTGAGGGCCCATCCA 61.732 66.667 27.56 16.21 36.21 3.41
6458 6949 2.578586 AATGCTGTGAGGGCCCATCC 62.579 60.000 27.56 13.45 0.00 3.51
6459 6950 0.685458 AAATGCTGTGAGGGCCCATC 60.685 55.000 27.56 18.86 0.00 3.51
6460 6951 0.252375 AAAATGCTGTGAGGGCCCAT 60.252 50.000 27.56 9.36 0.00 4.00
6461 6952 0.471591 AAAAATGCTGTGAGGGCCCA 60.472 50.000 27.56 0.00 0.00 5.36
6462 6953 0.247460 GAAAAATGCTGTGAGGGCCC 59.753 55.000 16.46 16.46 0.00 5.80
6463 6954 0.109132 CGAAAAATGCTGTGAGGGCC 60.109 55.000 0.00 0.00 0.00 5.80
6464 6955 0.881118 TCGAAAAATGCTGTGAGGGC 59.119 50.000 0.00 0.00 0.00 5.19
6465 6956 2.154462 AGTCGAAAAATGCTGTGAGGG 58.846 47.619 0.00 0.00 0.00 4.30
6466 6957 3.372206 CCTAGTCGAAAAATGCTGTGAGG 59.628 47.826 0.00 0.00 0.00 3.86
6467 6958 3.181516 GCCTAGTCGAAAAATGCTGTGAG 60.182 47.826 0.00 0.00 0.00 3.51
6585 7164 3.262151 AGAGCCTTAAGAGGAACAAGACC 59.738 47.826 3.36 0.00 46.74 3.85
6645 7224 3.070748 ACCAAACAACAAAACCAACAGC 58.929 40.909 0.00 0.00 0.00 4.40
6692 7271 5.279960 CCCTGGTGAATTCCCCTTTTAAAAG 60.280 44.000 19.19 19.19 35.79 2.27
6944 7526 1.056660 AACTCACCAGGTTCATCCGT 58.943 50.000 0.00 0.00 41.99 4.69
6946 7528 2.863809 ACAAACTCACCAGGTTCATCC 58.136 47.619 0.00 0.00 0.00 3.51
7086 7670 5.405935 TCTATCACTTCTAGTGCAGCAAA 57.594 39.130 0.00 0.00 45.54 3.68
7145 7729 7.819415 TCTCCATAAATAGAAGCATAACCGATG 59.181 37.037 0.00 0.00 38.73 3.84
7259 7843 4.500116 GGCGGGAGAGCGTGAGAC 62.500 72.222 0.00 0.00 38.18 3.36
7310 7894 2.091852 CTGGTCTCTTCTCCAGCAAC 57.908 55.000 0.00 0.00 43.45 4.17
7331 7915 1.413382 GTGCTTCTCACTCGTCTGTG 58.587 55.000 0.00 0.00 42.38 3.66
7408 7992 0.304705 AGTCAGCGTTCGTTTGCTTG 59.695 50.000 0.00 0.00 40.03 4.01
7447 8033 3.010584 ACTGTGGTCTTCAGGGCATAAAT 59.989 43.478 0.00 0.00 37.25 1.40
7457 8043 4.202357 ACAAGCTTGATACTGTGGTCTTCA 60.202 41.667 32.50 0.00 0.00 3.02
7465 8051 2.069273 GCGTGACAAGCTTGATACTGT 58.931 47.619 32.50 10.10 0.00 3.55
7490 8086 0.113972 TTCATTGCCATCACCCACCA 59.886 50.000 0.00 0.00 0.00 4.17
7512 8108 0.901124 AGCTCTGATCCAGTCACCAC 59.099 55.000 0.00 0.00 32.61 4.16
7625 8221 6.922957 GGCTGAAAACACTCAATTATCACAAA 59.077 34.615 0.00 0.00 0.00 2.83
7674 8270 7.510630 GCGTGATATACAGGTTATGATTGTTC 58.489 38.462 0.00 0.00 36.83 3.18
7675 8271 6.145534 CGCGTGATATACAGGTTATGATTGTT 59.854 38.462 0.00 0.00 36.83 2.83
7692 8288 0.526739 CCGGTCAACATCGCGTGATA 60.527 55.000 11.84 0.00 32.18 2.15
7752 8350 1.141657 ACCATGCGTGCAAGGATAGAT 59.858 47.619 21.68 0.00 38.11 1.98
7802 8402 6.095377 CCATTTGGCATGAAAGTAGAGAAAC 58.905 40.000 0.00 0.00 0.00 2.78
7849 8449 4.380382 CGCCAAAAATGGTTTACGTAGTTG 59.620 41.667 0.00 0.00 37.78 3.16
7878 8478 0.398696 TGAAGCAGGGCCGTTCTTTA 59.601 50.000 11.64 5.03 0.00 1.85
7879 8479 1.150536 TGAAGCAGGGCCGTTCTTT 59.849 52.632 11.64 0.00 0.00 2.52
7880 8480 1.600916 GTGAAGCAGGGCCGTTCTT 60.601 57.895 10.19 10.19 0.00 2.52
7918 8595 3.391296 TGAGCAGTAAAGGACTTTGACCT 59.609 43.478 7.53 0.00 35.64 3.85
7923 8600 7.175119 GGTTCTTATTGAGCAGTAAAGGACTTT 59.825 37.037 2.57 2.57 35.64 2.66
7939 8616 9.685828 TTCCTTGTAATTTTTCGGTTCTTATTG 57.314 29.630 0.00 0.00 0.00 1.90
7999 8677 2.393271 AGTGCCCTCTCGAGAATTTG 57.607 50.000 17.36 4.44 0.00 2.32
8000 8678 2.616510 CCAAGTGCCCTCTCGAGAATTT 60.617 50.000 17.36 1.61 0.00 1.82
8012 8690 0.323360 TTATGCCTGTCCAAGTGCCC 60.323 55.000 0.00 0.00 0.00 5.36
8046 8724 7.324616 GGTCGAGAATGTCAAATTCAAAGAAAG 59.675 37.037 0.00 0.00 0.00 2.62
8052 8730 5.530915 ACTTGGTCGAGAATGTCAAATTCAA 59.469 36.000 0.00 0.00 0.00 2.69
8109 8787 2.494918 GGTCGATGAGTCCCACCG 59.505 66.667 0.00 0.00 0.00 4.94
8110 8788 2.901042 GGGTCGATGAGTCCCACC 59.099 66.667 3.22 0.00 45.90 4.61
8113 8791 1.749033 GGATGGGTCGATGAGTCCC 59.251 63.158 1.05 1.05 46.66 4.46
8114 8792 1.048724 TGGGATGGGTCGATGAGTCC 61.049 60.000 0.00 0.00 0.00 3.85
8115 8793 0.105039 GTGGGATGGGTCGATGAGTC 59.895 60.000 0.00 0.00 0.00 3.36
8116 8794 1.338136 GGTGGGATGGGTCGATGAGT 61.338 60.000 0.00 0.00 0.00 3.41
8117 8795 1.050988 AGGTGGGATGGGTCGATGAG 61.051 60.000 0.00 0.00 0.00 2.90
8118 8796 0.263468 TAGGTGGGATGGGTCGATGA 59.737 55.000 0.00 0.00 0.00 2.92
8119 8797 1.070758 CTTAGGTGGGATGGGTCGATG 59.929 57.143 0.00 0.00 0.00 3.84
8120 8798 1.424638 CTTAGGTGGGATGGGTCGAT 58.575 55.000 0.00 0.00 0.00 3.59
8121 8799 0.689745 CCTTAGGTGGGATGGGTCGA 60.690 60.000 0.00 0.00 0.00 4.20
8122 8800 1.830145 CCTTAGGTGGGATGGGTCG 59.170 63.158 0.00 0.00 0.00 4.79
8123 8801 1.532238 GCCTTAGGTGGGATGGGTC 59.468 63.158 0.00 0.00 0.00 4.46
8142 8820 7.636150 ATCATCTCCATAAGAACCAAACAAG 57.364 36.000 0.00 0.00 37.61 3.16
8174 8852 2.359975 CACCCCGTGGCCTCTTTC 60.360 66.667 3.32 0.00 33.59 2.62
8186 8864 0.171231 GCGCAGAAAATTCTCACCCC 59.829 55.000 0.30 0.00 34.74 4.95
8281 8983 2.154462 CTTGTGAGGCGTGGAAAGAAT 58.846 47.619 0.00 0.00 0.00 2.40
8285 8987 4.473643 CCTTGTGAGGCGTGGAAA 57.526 55.556 0.00 0.00 35.94 3.13
8366 9068 3.758554 CAGGGTGACATTTGGTTAAGGAG 59.241 47.826 0.00 0.00 0.00 3.69
8372 9074 0.105760 TGCCAGGGTGACATTTGGTT 60.106 50.000 0.00 0.00 33.21 3.67
8373 9075 0.105760 TTGCCAGGGTGACATTTGGT 60.106 50.000 0.00 0.00 33.21 3.67
8374 9076 1.047002 TTTGCCAGGGTGACATTTGG 58.953 50.000 0.00 0.00 0.00 3.28
8375 9077 2.482864 GTTTTGCCAGGGTGACATTTG 58.517 47.619 0.00 0.00 0.00 2.32
8376 9078 1.416030 GGTTTTGCCAGGGTGACATTT 59.584 47.619 0.00 0.00 37.17 2.32
8377 9079 1.047801 GGTTTTGCCAGGGTGACATT 58.952 50.000 0.00 0.00 37.17 2.71
8378 9080 0.105760 TGGTTTTGCCAGGGTGACAT 60.106 50.000 0.00 0.00 43.61 3.06
8379 9081 1.307986 TGGTTTTGCCAGGGTGACA 59.692 52.632 0.00 0.00 43.61 3.58
8380 9082 4.268720 TGGTTTTGCCAGGGTGAC 57.731 55.556 0.00 0.00 43.61 3.67
8387 9089 3.740495 TTCGGCCCTGGTTTTGCCA 62.740 57.895 11.49 0.00 45.63 4.92
8388 9090 1.826340 AATTCGGCCCTGGTTTTGCC 61.826 55.000 0.00 1.95 41.85 4.52
8389 9091 0.670239 CAATTCGGCCCTGGTTTTGC 60.670 55.000 0.00 0.00 0.00 3.68
8390 9092 0.670239 GCAATTCGGCCCTGGTTTTG 60.670 55.000 0.00 0.00 0.00 2.44
8391 9093 1.671166 GCAATTCGGCCCTGGTTTT 59.329 52.632 0.00 0.00 0.00 2.43
8392 9094 3.376546 GCAATTCGGCCCTGGTTT 58.623 55.556 0.00 0.00 0.00 3.27
8450 9152 4.597032 TGGCAACAGGGGAAACTG 57.403 55.556 0.00 0.00 46.17 3.16
8471 9173 1.302832 CCCACTGAACACTGGGCTC 60.303 63.158 6.59 0.00 40.95 4.70
8477 9179 2.515901 GGGTGCCCACTGAACACT 59.484 61.111 1.66 0.00 34.70 3.55
8478 9180 2.978010 CGGGTGCCCACTGAACAC 60.978 66.667 8.14 0.00 35.37 3.32
8479 9181 3.484806 ACGGGTGCCCACTGAACA 61.485 61.111 8.14 0.00 35.37 3.18
8493 9612 2.507339 AATTTTGCAGTGTTCCACGG 57.493 45.000 0.00 0.00 39.64 4.94
8525 9644 2.158856 GGTTCCCGATGGGTTAACTAGG 60.159 54.545 5.42 2.51 44.74 3.02
8527 9646 2.836667 AGGTTCCCGATGGGTTAACTA 58.163 47.619 5.42 0.00 44.74 2.24
8538 9657 1.075748 GGGCCTAGTAGGTTCCCGA 60.076 63.158 17.69 0.00 37.80 5.14
8553 9672 0.474614 GGGGGATAGAAGAAGTGGGC 59.525 60.000 0.00 0.00 0.00 5.36
8588 9707 0.460284 CTATCGTCGGCAGGCTGTTT 60.460 55.000 17.16 0.00 0.00 2.83
8592 9711 2.835431 AGCTATCGTCGGCAGGCT 60.835 61.111 0.00 0.00 0.00 4.58
8595 9714 2.050895 CGGAGCTATCGTCGGCAG 60.051 66.667 0.00 0.00 0.00 4.85
8680 9799 6.251376 CGATGAACCTTTTATAAAAGCACAGC 59.749 38.462 26.10 23.28 43.07 4.40
8705 9824 8.891671 ATGCCATGAAATGTTTTTATATCCAC 57.108 30.769 0.00 0.00 44.81 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.