Multiple sequence alignment - TraesCS5D01G059500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G059500 chr5D 100.000 4789 0 0 1 4789 56445395 56450183 0.000000e+00 8844
1 TraesCS5D01G059500 chr5D 91.477 176 13 2 87 262 498492518 498492345 1.720000e-59 241
2 TraesCS5D01G059500 chr5A 94.712 2099 91 11 268 2355 44975303 44977392 0.000000e+00 3243
3 TraesCS5D01G059500 chr5A 92.274 1372 77 18 3150 4508 44978059 44979414 0.000000e+00 1919
4 TraesCS5D01G059500 chr5A 92.467 677 33 7 2401 3068 44977393 44978060 0.000000e+00 952
5 TraesCS5D01G059500 chr5B 91.919 2116 103 23 274 2355 59156414 59158495 0.000000e+00 2898
6 TraesCS5D01G059500 chr5B 91.164 1460 84 27 3150 4599 59159161 59160585 0.000000e+00 1940
7 TraesCS5D01G059500 chr5B 95.516 669 27 3 2401 3068 59158496 59159162 0.000000e+00 1066
8 TraesCS5D01G059500 chr5B 98.913 92 0 1 3067 3158 665559938 665560028 3.830000e-36 163
9 TraesCS5D01G059500 chr1D 92.982 171 10 2 84 254 9764221 9764053 1.030000e-61 248
10 TraesCS5D01G059500 chr1D 91.011 178 14 2 91 267 99216245 99216069 6.190000e-59 239
11 TraesCS5D01G059500 chr1D 90.960 177 14 2 91 267 105247634 105247808 2.230000e-58 237
12 TraesCS5D01G059500 chr4D 93.373 166 10 1 91 256 468208806 468208642 1.330000e-60 244
13 TraesCS5D01G059500 chr4D 98.889 90 1 0 3065 3154 10971529 10971618 1.380000e-35 161
14 TraesCS5D01G059500 chr2D 91.209 182 13 3 85 265 475083487 475083666 1.330000e-60 244
15 TraesCS5D01G059500 chr3D 92.857 168 11 1 87 254 59924212 59924378 4.790000e-60 243
16 TraesCS5D01G059500 chr2A 91.525 177 12 3 91 267 674496815 674496988 1.720000e-59 241
17 TraesCS5D01G059500 chr7D 90.960 177 14 2 91 267 24559345 24559171 2.230000e-58 237
18 TraesCS5D01G059500 chr7D 93.204 103 6 1 3060 3161 579751257 579751359 2.990000e-32 150
19 TraesCS5D01G059500 chr6B 97.872 94 1 1 3064 3156 526478336 526478243 1.380000e-35 161
20 TraesCS5D01G059500 chr3B 98.876 89 1 0 3064 3152 360112253 360112165 4.960000e-35 159
21 TraesCS5D01G059500 chr7B 94.118 102 4 2 3067 3166 15307969 15307868 2.310000e-33 154
22 TraesCS5D01G059500 chr4A 94.949 99 3 2 3059 3156 58913139 58913236 2.310000e-33 154
23 TraesCS5D01G059500 chr3A 94.059 101 5 1 3058 3158 581850076 581850175 8.300000e-33 152
24 TraesCS5D01G059500 chr1A 92.381 105 6 2 3067 3171 193040025 193040127 1.070000e-31 148


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G059500 chr5D 56445395 56450183 4788 False 8844 8844 100.000000 1 4789 1 chr5D.!!$F1 4788
1 TraesCS5D01G059500 chr5A 44975303 44979414 4111 False 2038 3243 93.151000 268 4508 3 chr5A.!!$F1 4240
2 TraesCS5D01G059500 chr5B 59156414 59160585 4171 False 1968 2898 92.866333 274 4599 3 chr5B.!!$F2 4325

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
743 769 0.108329 TTCCCTGGAGAAATCGACGC 60.108 55.0 0.00 0.0 0.0 5.19 F
1500 1536 0.249322 AAGTTCGATCGGTATGGCGG 60.249 55.0 16.41 0.0 0.0 6.13 F
3080 3129 0.324091 TGTTCTACTCCCTCCGTCCC 60.324 60.0 0.00 0.0 0.0 4.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1579 1616 2.748209 ATAGGAAAAATCCCCACGGG 57.252 50.000 0.0 0.0 46.11 5.28 R
3320 3369 1.001378 GCAGCACAAAGAATCCAACGT 60.001 47.619 0.0 0.0 0.00 3.99 R
3955 4013 0.180406 ATTATCCACACCCGCACTCC 59.820 55.000 0.0 0.0 0.00 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 7.538303 AAACACATGTTTTCACAGAATTTCC 57.462 32.000 4.13 0.00 45.07 3.13
51 52 5.600696 ACACATGTTTTCACAGAATTTCCC 58.399 37.500 0.00 0.00 35.94 3.97
52 53 5.128499 ACACATGTTTTCACAGAATTTCCCA 59.872 36.000 0.00 0.00 35.94 4.37
53 54 6.047870 CACATGTTTTCACAGAATTTCCCAA 58.952 36.000 0.00 0.00 35.94 4.12
54 55 6.201425 CACATGTTTTCACAGAATTTCCCAAG 59.799 38.462 0.00 0.00 35.94 3.61
55 56 5.930837 TGTTTTCACAGAATTTCCCAAGT 57.069 34.783 0.00 0.00 0.00 3.16
56 57 7.069331 ACATGTTTTCACAGAATTTCCCAAGTA 59.931 33.333 0.00 0.00 35.94 2.24
57 58 7.411486 TGTTTTCACAGAATTTCCCAAGTAA 57.589 32.000 0.00 0.00 0.00 2.24
58 59 7.841956 TGTTTTCACAGAATTTCCCAAGTAAA 58.158 30.769 0.00 0.00 0.00 2.01
59 60 8.314751 TGTTTTCACAGAATTTCCCAAGTAAAA 58.685 29.630 0.00 0.00 0.00 1.52
60 61 8.600625 GTTTTCACAGAATTTCCCAAGTAAAAC 58.399 33.333 0.00 0.00 0.00 2.43
61 62 7.411486 TTCACAGAATTTCCCAAGTAAAACA 57.589 32.000 0.00 0.00 0.00 2.83
62 63 7.038154 TCACAGAATTTCCCAAGTAAAACAG 57.962 36.000 0.00 0.00 0.00 3.16
63 64 6.040391 TCACAGAATTTCCCAAGTAAAACAGG 59.960 38.462 0.00 0.00 0.00 4.00
64 65 5.304357 ACAGAATTTCCCAAGTAAAACAGGG 59.696 40.000 0.00 0.00 42.86 4.45
65 66 4.838423 AGAATTTCCCAAGTAAAACAGGGG 59.162 41.667 0.00 0.00 41.77 4.79
66 67 2.687003 TTCCCAAGTAAAACAGGGGG 57.313 50.000 0.00 0.00 41.77 5.40
67 68 1.536644 TCCCAAGTAAAACAGGGGGT 58.463 50.000 0.00 0.00 41.77 4.95
68 69 1.860906 TCCCAAGTAAAACAGGGGGTT 59.139 47.619 0.00 0.00 41.77 4.11
69 70 1.967779 CCCAAGTAAAACAGGGGGTTG 59.032 52.381 0.00 0.00 40.35 3.77
70 71 2.425102 CCCAAGTAAAACAGGGGGTTGA 60.425 50.000 0.00 0.00 40.35 3.18
71 72 3.301274 CCAAGTAAAACAGGGGGTTGAA 58.699 45.455 0.00 0.00 40.35 2.69
72 73 3.901222 CCAAGTAAAACAGGGGGTTGAAT 59.099 43.478 0.00 0.00 40.35 2.57
73 74 4.021456 CCAAGTAAAACAGGGGGTTGAATC 60.021 45.833 0.00 0.00 40.35 2.52
74 75 3.774734 AGTAAAACAGGGGGTTGAATCC 58.225 45.455 0.00 0.00 40.35 3.01
75 76 3.401342 AGTAAAACAGGGGGTTGAATCCT 59.599 43.478 0.00 0.00 40.35 3.24
77 78 4.344237 CAGGGGGTTGAATCCTGC 57.656 61.111 0.00 0.00 41.12 4.85
78 79 1.693640 CAGGGGGTTGAATCCTGCT 59.306 57.895 0.00 0.00 41.12 4.24
79 80 0.682209 CAGGGGGTTGAATCCTGCTG 60.682 60.000 0.00 0.00 41.12 4.41
80 81 1.380380 GGGGGTTGAATCCTGCTGG 60.380 63.158 2.58 2.58 0.00 4.85
81 82 1.380380 GGGGTTGAATCCTGCTGGG 60.380 63.158 10.07 0.00 0.00 4.45
94 95 5.552870 TCCTGCTGGGAAAGAATATACTC 57.447 43.478 10.07 0.00 41.91 2.59
95 96 4.348168 TCCTGCTGGGAAAGAATATACTCC 59.652 45.833 10.07 0.00 41.91 3.85
96 97 4.103153 CCTGCTGGGAAAGAATATACTCCA 59.897 45.833 0.71 0.00 37.23 3.86
97 98 5.222007 CCTGCTGGGAAAGAATATACTCCAT 60.222 44.000 0.71 0.00 37.23 3.41
98 99 5.869579 TGCTGGGAAAGAATATACTCCATC 58.130 41.667 0.00 0.00 0.00 3.51
99 100 5.221925 TGCTGGGAAAGAATATACTCCATCC 60.222 44.000 0.00 0.00 0.00 3.51
100 101 5.482908 CTGGGAAAGAATATACTCCATCCG 58.517 45.833 0.00 0.00 0.00 4.18
101 102 4.905456 TGGGAAAGAATATACTCCATCCGT 59.095 41.667 0.00 0.00 0.00 4.69
102 103 5.368523 TGGGAAAGAATATACTCCATCCGTT 59.631 40.000 0.00 0.00 0.00 4.44
103 104 5.932883 GGGAAAGAATATACTCCATCCGTTC 59.067 44.000 0.00 0.00 0.00 3.95
104 105 5.932883 GGAAAGAATATACTCCATCCGTTCC 59.067 44.000 0.00 0.00 0.00 3.62
105 106 6.239629 GGAAAGAATATACTCCATCCGTTCCT 60.240 42.308 0.00 0.00 0.00 3.36
106 107 7.039223 GGAAAGAATATACTCCATCCGTTCCTA 60.039 40.741 0.00 0.00 0.00 2.94
107 108 7.850935 AAGAATATACTCCATCCGTTCCTAA 57.149 36.000 0.00 0.00 0.00 2.69
108 109 7.850935 AGAATATACTCCATCCGTTCCTAAA 57.149 36.000 0.00 0.00 0.00 1.85
109 110 8.437274 AGAATATACTCCATCCGTTCCTAAAT 57.563 34.615 0.00 0.00 0.00 1.40
110 111 9.543231 AGAATATACTCCATCCGTTCCTAAATA 57.457 33.333 0.00 0.00 0.00 1.40
113 114 7.792364 ATACTCCATCCGTTCCTAAATATGA 57.208 36.000 0.00 0.00 0.00 2.15
114 115 6.102897 ACTCCATCCGTTCCTAAATATGAG 57.897 41.667 0.00 0.00 0.00 2.90
115 116 5.602978 ACTCCATCCGTTCCTAAATATGAGT 59.397 40.000 0.00 0.00 0.00 3.41
116 117 6.097915 TCCATCCGTTCCTAAATATGAGTC 57.902 41.667 0.00 0.00 0.00 3.36
117 118 5.839063 TCCATCCGTTCCTAAATATGAGTCT 59.161 40.000 0.00 0.00 0.00 3.24
118 119 6.326583 TCCATCCGTTCCTAAATATGAGTCTT 59.673 38.462 0.00 0.00 0.00 3.01
119 120 6.992715 CCATCCGTTCCTAAATATGAGTCTTT 59.007 38.462 0.00 0.00 0.00 2.52
120 121 8.148351 CCATCCGTTCCTAAATATGAGTCTTTA 58.852 37.037 0.00 0.00 0.00 1.85
121 122 9.712305 CATCCGTTCCTAAATATGAGTCTTTAT 57.288 33.333 0.00 0.00 0.00 1.40
147 148 8.370493 AGAGATTTCATTATGAACCACATACG 57.630 34.615 7.19 0.00 40.62 3.06
148 149 8.204160 AGAGATTTCATTATGAACCACATACGA 58.796 33.333 7.19 0.00 40.62 3.43
149 150 8.731275 AGATTTCATTATGAACCACATACGAA 57.269 30.769 7.19 0.00 40.62 3.85
150 151 9.342308 AGATTTCATTATGAACCACATACGAAT 57.658 29.630 7.19 0.00 40.62 3.34
151 152 9.385902 GATTTCATTATGAACCACATACGAATG 57.614 33.333 7.19 0.00 40.62 2.67
152 153 7.857734 TTCATTATGAACCACATACGAATGT 57.142 32.000 3.20 0.00 40.62 2.71
153 154 8.950208 TTCATTATGAACCACATACGAATGTA 57.050 30.769 3.20 0.00 40.62 2.29
154 155 9.554395 TTCATTATGAACCACATACGAATGTAT 57.446 29.630 3.20 0.00 40.62 2.29
161 162 9.855021 TGAACCACATACGAATGTATATAGATG 57.145 33.333 0.00 0.00 44.70 2.90
162 163 8.703604 AACCACATACGAATGTATATAGATGC 57.296 34.615 0.00 0.00 44.70 3.91
163 164 7.836842 ACCACATACGAATGTATATAGATGCA 58.163 34.615 0.00 0.00 44.70 3.96
164 165 8.478066 ACCACATACGAATGTATATAGATGCAT 58.522 33.333 0.00 0.00 44.70 3.96
194 195 9.559958 AAGTGTAGATTTATTCATTTTGCTTCG 57.440 29.630 0.00 0.00 0.00 3.79
195 196 8.730680 AGTGTAGATTTATTCATTTTGCTTCGT 58.269 29.630 0.00 0.00 0.00 3.85
196 197 9.982291 GTGTAGATTTATTCATTTTGCTTCGTA 57.018 29.630 0.00 0.00 0.00 3.43
203 204 9.982291 TTTATTCATTTTGCTTCGTATGTAGTC 57.018 29.630 0.00 0.00 0.00 2.59
204 205 6.417191 TTCATTTTGCTTCGTATGTAGTCC 57.583 37.500 0.00 0.00 0.00 3.85
205 206 5.483811 TCATTTTGCTTCGTATGTAGTCCA 58.516 37.500 0.00 0.00 0.00 4.02
206 207 5.350365 TCATTTTGCTTCGTATGTAGTCCAC 59.650 40.000 0.00 0.00 0.00 4.02
207 208 2.953466 TGCTTCGTATGTAGTCCACC 57.047 50.000 0.00 0.00 0.00 4.61
208 209 2.453521 TGCTTCGTATGTAGTCCACCT 58.546 47.619 0.00 0.00 0.00 4.00
209 210 3.623703 TGCTTCGTATGTAGTCCACCTA 58.376 45.455 0.00 0.00 0.00 3.08
210 211 3.630769 TGCTTCGTATGTAGTCCACCTAG 59.369 47.826 0.00 0.00 0.00 3.02
211 212 3.631227 GCTTCGTATGTAGTCCACCTAGT 59.369 47.826 0.00 0.00 0.00 2.57
212 213 4.497674 GCTTCGTATGTAGTCCACCTAGTG 60.498 50.000 0.00 0.00 0.00 2.74
249 250 8.919777 AAGATTTTATATTTAGGAACGGAGGG 57.080 34.615 0.00 0.00 0.00 4.30
250 251 8.271398 AGATTTTATATTTAGGAACGGAGGGA 57.729 34.615 0.00 0.00 0.00 4.20
251 252 8.376270 AGATTTTATATTTAGGAACGGAGGGAG 58.624 37.037 0.00 0.00 0.00 4.30
252 253 7.441903 TTTTATATTTAGGAACGGAGGGAGT 57.558 36.000 0.00 0.00 0.00 3.85
253 254 8.551682 TTTTATATTTAGGAACGGAGGGAGTA 57.448 34.615 0.00 0.00 0.00 2.59
254 255 7.771927 TTATATTTAGGAACGGAGGGAGTAG 57.228 40.000 0.00 0.00 0.00 2.57
255 256 3.744940 TTTAGGAACGGAGGGAGTAGA 57.255 47.619 0.00 0.00 0.00 2.59
256 257 3.967467 TTAGGAACGGAGGGAGTAGAT 57.033 47.619 0.00 0.00 0.00 1.98
257 258 5.393068 TTTAGGAACGGAGGGAGTAGATA 57.607 43.478 0.00 0.00 0.00 1.98
258 259 5.595814 TTAGGAACGGAGGGAGTAGATAT 57.404 43.478 0.00 0.00 0.00 1.63
259 260 6.708885 TTAGGAACGGAGGGAGTAGATATA 57.291 41.667 0.00 0.00 0.00 0.86
260 261 5.799978 AGGAACGGAGGGAGTAGATATAT 57.200 43.478 0.00 0.00 0.00 0.86
261 262 6.905067 AGGAACGGAGGGAGTAGATATATA 57.095 41.667 0.00 0.00 0.00 0.86
262 263 7.468752 AGGAACGGAGGGAGTAGATATATAT 57.531 40.000 0.00 0.00 0.00 0.86
263 264 8.578593 AGGAACGGAGGGAGTAGATATATATA 57.421 38.462 0.00 0.00 0.00 0.86
264 265 8.662255 AGGAACGGAGGGAGTAGATATATATAG 58.338 40.741 0.00 0.00 0.00 1.31
265 266 8.658619 GGAACGGAGGGAGTAGATATATATAGA 58.341 40.741 0.00 0.00 0.00 1.98
266 267 9.715121 GAACGGAGGGAGTAGATATATATAGAG 57.285 40.741 0.00 0.00 0.00 2.43
371 390 0.889638 AGAAGAGTGAGACCGACGCA 60.890 55.000 0.00 0.00 0.00 5.24
742 768 1.927895 CTTCCCTGGAGAAATCGACG 58.072 55.000 0.00 0.00 0.00 5.12
743 769 0.108329 TTCCCTGGAGAAATCGACGC 60.108 55.000 0.00 0.00 0.00 5.19
746 772 1.878522 CTGGAGAAATCGACGCGGG 60.879 63.158 12.47 1.12 0.00 6.13
747 773 2.585247 GGAGAAATCGACGCGGGG 60.585 66.667 12.47 0.66 0.00 5.73
776 802 1.078426 GTTGGGCGTATGCTGGAGT 60.078 57.895 6.92 0.00 42.25 3.85
805 831 3.118223 AGGATTTGGGTCCTCTCGAAATC 60.118 47.826 0.00 0.00 45.51 2.17
852 878 0.813610 CCCCGTGCTAATTGATCGCA 60.814 55.000 0.00 0.00 0.00 5.10
892 918 2.703409 CAAGGTGCTGATACGCGC 59.297 61.111 5.73 0.00 39.59 6.86
986 1012 3.721706 CCTGACAGGCCCTGGTCC 61.722 72.222 16.70 4.41 35.51 4.46
1240 1272 5.977635 TCATATGCTATATGTGGTAGTGGC 58.022 41.667 0.00 0.00 0.00 5.01
1259 1291 1.268899 GCATGCTGATGAATGGGTAGC 59.731 52.381 11.37 0.00 35.06 3.58
1274 1306 1.475213 GGTAGCGAAATGAAGGAGGGG 60.475 57.143 0.00 0.00 0.00 4.79
1334 1366 6.617879 GGAAACCTCACGTAGCAATTTTATT 58.382 36.000 0.00 0.00 0.00 1.40
1387 1419 4.072131 TGCTGTCCATTTCTAGGTTTGAC 58.928 43.478 0.00 0.00 0.00 3.18
1388 1420 3.440522 GCTGTCCATTTCTAGGTTTGACC 59.559 47.826 0.00 0.00 38.99 4.02
1402 1434 5.092259 AGGTTTGACCCTACTAGCTTAACT 58.908 41.667 0.00 0.00 39.75 2.24
1406 1438 3.835978 TGACCCTACTAGCTTAACTTGCA 59.164 43.478 0.00 0.00 0.00 4.08
1412 1444 4.928661 ACTAGCTTAACTTGCACATTCG 57.071 40.909 0.00 0.00 0.00 3.34
1415 1447 2.157668 AGCTTAACTTGCACATTCGTCG 59.842 45.455 0.00 0.00 0.00 5.12
1483 1519 5.875359 GTGTACTCCCCAGAGAAATGTTAAG 59.125 44.000 0.00 0.00 43.39 1.85
1491 1527 5.005779 CCCAGAGAAATGTTAAGTTCGATCG 59.994 44.000 9.36 9.36 35.55 3.69
1500 1536 0.249322 AAGTTCGATCGGTATGGCGG 60.249 55.000 16.41 0.00 0.00 6.13
1664 1701 0.890996 GGGTGACTGGTGGCAGAAAG 60.891 60.000 0.00 0.00 0.00 2.62
1833 1871 6.018098 CCTTCTAATCTAGCTGTCATTGCTTG 60.018 42.308 0.00 0.00 41.46 4.01
1841 1879 2.291465 GCTGTCATTGCTTGAACAGTCA 59.709 45.455 10.20 0.00 36.59 3.41
1978 2016 8.407832 CCATTGTGATGTTCTATCTTTTATGCA 58.592 33.333 0.00 0.00 0.00 3.96
2155 2195 7.847096 TGGTAGTGCTTCAAATATCTAGTTGA 58.153 34.615 0.00 0.00 38.35 3.18
2355 2395 9.823647 GTCAAATTATTCTGTAGATCCTTGAGA 57.176 33.333 0.00 0.00 0.00 3.27
2357 2397 9.829507 CAAATTATTCTGTAGATCCTTGAGAGT 57.170 33.333 0.00 0.00 0.00 3.24
2359 2399 8.774546 ATTATTCTGTAGATCCTTGAGAGTCA 57.225 34.615 0.00 0.00 0.00 3.41
2360 2400 6.713762 ATTCTGTAGATCCTTGAGAGTCAG 57.286 41.667 0.00 0.00 0.00 3.51
2361 2401 5.443230 TCTGTAGATCCTTGAGAGTCAGA 57.557 43.478 0.00 0.00 0.00 3.27
2362 2402 5.821097 TCTGTAGATCCTTGAGAGTCAGAA 58.179 41.667 0.00 0.00 0.00 3.02
2363 2403 6.249192 TCTGTAGATCCTTGAGAGTCAGAAA 58.751 40.000 0.00 0.00 0.00 2.52
2364 2404 6.376864 TCTGTAGATCCTTGAGAGTCAGAAAG 59.623 42.308 0.00 0.00 0.00 2.62
2365 2405 6.013379 TGTAGATCCTTGAGAGTCAGAAAGT 58.987 40.000 0.00 0.00 0.00 2.66
2366 2406 7.175797 TGTAGATCCTTGAGAGTCAGAAAGTA 58.824 38.462 0.00 0.00 0.00 2.24
2367 2407 6.773976 AGATCCTTGAGAGTCAGAAAGTAG 57.226 41.667 0.00 0.00 0.00 2.57
2368 2408 5.656416 AGATCCTTGAGAGTCAGAAAGTAGG 59.344 44.000 0.00 0.00 0.00 3.18
2369 2409 4.999310 TCCTTGAGAGTCAGAAAGTAGGA 58.001 43.478 0.00 0.00 0.00 2.94
2370 2410 5.394738 TCCTTGAGAGTCAGAAAGTAGGAA 58.605 41.667 0.00 0.00 26.70 3.36
2371 2411 5.839063 TCCTTGAGAGTCAGAAAGTAGGAAA 59.161 40.000 0.00 0.00 26.70 3.13
2372 2412 6.498651 TCCTTGAGAGTCAGAAAGTAGGAAAT 59.501 38.462 0.00 0.00 26.70 2.17
2373 2413 6.816140 CCTTGAGAGTCAGAAAGTAGGAAATC 59.184 42.308 0.00 0.00 0.00 2.17
2374 2414 7.310361 CCTTGAGAGTCAGAAAGTAGGAAATCT 60.310 40.741 0.00 0.00 0.00 2.40
2375 2415 6.929625 TGAGAGTCAGAAAGTAGGAAATCTG 58.070 40.000 0.00 0.00 40.46 2.90
2376 2416 6.495181 TGAGAGTCAGAAAGTAGGAAATCTGT 59.505 38.462 0.00 0.00 40.11 3.41
2377 2417 7.015682 TGAGAGTCAGAAAGTAGGAAATCTGTT 59.984 37.037 0.00 0.00 40.11 3.16
2378 2418 7.382898 AGAGTCAGAAAGTAGGAAATCTGTTC 58.617 38.462 0.00 0.00 40.11 3.18
2379 2419 7.234577 AGAGTCAGAAAGTAGGAAATCTGTTCT 59.765 37.037 0.00 0.00 40.11 3.01
2380 2420 8.423906 AGTCAGAAAGTAGGAAATCTGTTCTA 57.576 34.615 0.00 0.00 40.11 2.10
2381 2421 9.041354 AGTCAGAAAGTAGGAAATCTGTTCTAT 57.959 33.333 0.00 0.00 40.11 1.98
2388 2428 9.804758 AAGTAGGAAATCTGTTCTATAAAGTCG 57.195 33.333 0.00 0.00 0.00 4.18
2389 2429 9.186837 AGTAGGAAATCTGTTCTATAAAGTCGA 57.813 33.333 0.00 0.00 0.00 4.20
2390 2430 9.798994 GTAGGAAATCTGTTCTATAAAGTCGAA 57.201 33.333 0.00 0.00 0.00 3.71
2392 2432 9.892130 AGGAAATCTGTTCTATAAAGTCGAATT 57.108 29.630 0.00 0.00 0.00 2.17
2393 2433 9.922305 GGAAATCTGTTCTATAAAGTCGAATTG 57.078 33.333 0.00 0.00 0.00 2.32
2416 2456 7.176589 TGACCAACCTTGTAAGTTGAAATTT 57.823 32.000 5.25 0.00 46.03 1.82
2495 2537 4.168101 ACCCAGGAGAGTTCAAGTTGATA 58.832 43.478 6.36 0.00 0.00 2.15
2576 2618 6.306356 CAGAAACTTCGTATGGCTTGAAATTG 59.694 38.462 0.00 0.00 0.00 2.32
2613 2655 2.031682 AGTTTGATCGCAGCAGTTTCAC 60.032 45.455 0.00 0.00 0.00 3.18
2684 2726 7.470900 ACATTGCTGGTTGTTTTGTTTTTATG 58.529 30.769 0.00 0.00 0.00 1.90
3033 3082 4.877823 TGTTCCTATGTCTGATGCATGTTC 59.122 41.667 2.46 0.00 0.00 3.18
3066 3115 7.550551 CCTTTGTGTGTCTATCATATGTGTTCT 59.449 37.037 1.90 0.00 0.00 3.01
3067 3116 9.586435 CTTTGTGTGTCTATCATATGTGTTCTA 57.414 33.333 1.90 0.00 0.00 2.10
3068 3117 8.926715 TTGTGTGTCTATCATATGTGTTCTAC 57.073 34.615 1.90 0.00 0.00 2.59
3069 3118 8.293699 TGTGTGTCTATCATATGTGTTCTACT 57.706 34.615 1.90 0.00 0.00 2.57
3070 3119 8.406297 TGTGTGTCTATCATATGTGTTCTACTC 58.594 37.037 1.90 0.20 0.00 2.59
3071 3120 7.863375 GTGTGTCTATCATATGTGTTCTACTCC 59.137 40.741 1.90 0.00 0.00 3.85
3072 3121 7.014326 TGTGTCTATCATATGTGTTCTACTCCC 59.986 40.741 1.90 0.00 0.00 4.30
3073 3122 7.231722 GTGTCTATCATATGTGTTCTACTCCCT 59.768 40.741 1.90 0.00 0.00 4.20
3074 3123 7.448777 TGTCTATCATATGTGTTCTACTCCCTC 59.551 40.741 1.90 0.00 0.00 4.30
3075 3124 6.948886 TCTATCATATGTGTTCTACTCCCTCC 59.051 42.308 1.90 0.00 0.00 4.30
3076 3125 3.889538 TCATATGTGTTCTACTCCCTCCG 59.110 47.826 1.90 0.00 0.00 4.63
3077 3126 2.233305 ATGTGTTCTACTCCCTCCGT 57.767 50.000 0.00 0.00 0.00 4.69
3078 3127 1.542492 TGTGTTCTACTCCCTCCGTC 58.458 55.000 0.00 0.00 0.00 4.79
3079 3128 0.816373 GTGTTCTACTCCCTCCGTCC 59.184 60.000 0.00 0.00 0.00 4.79
3080 3129 0.324091 TGTTCTACTCCCTCCGTCCC 60.324 60.000 0.00 0.00 0.00 4.46
3081 3130 0.324091 GTTCTACTCCCTCCGTCCCA 60.324 60.000 0.00 0.00 0.00 4.37
3082 3131 0.635009 TTCTACTCCCTCCGTCCCAT 59.365 55.000 0.00 0.00 0.00 4.00
3083 3132 1.526315 TCTACTCCCTCCGTCCCATA 58.474 55.000 0.00 0.00 0.00 2.74
3084 3133 1.854939 TCTACTCCCTCCGTCCCATAA 59.145 52.381 0.00 0.00 0.00 1.90
3085 3134 2.449730 TCTACTCCCTCCGTCCCATAAT 59.550 50.000 0.00 0.00 0.00 1.28
3086 3135 1.424638 ACTCCCTCCGTCCCATAATG 58.575 55.000 0.00 0.00 0.00 1.90
3087 3136 1.344087 ACTCCCTCCGTCCCATAATGT 60.344 52.381 0.00 0.00 0.00 2.71
3088 3137 2.090943 ACTCCCTCCGTCCCATAATGTA 60.091 50.000 0.00 0.00 0.00 2.29
3089 3138 2.969950 CTCCCTCCGTCCCATAATGTAA 59.030 50.000 0.00 0.00 0.00 2.41
3090 3139 2.969950 TCCCTCCGTCCCATAATGTAAG 59.030 50.000 0.00 0.00 0.00 2.34
3091 3140 2.969950 CCCTCCGTCCCATAATGTAAGA 59.030 50.000 0.00 0.00 0.00 2.10
3092 3141 3.244112 CCCTCCGTCCCATAATGTAAGAC 60.244 52.174 0.00 0.00 0.00 3.01
3094 3143 3.025978 TCCGTCCCATAATGTAAGACGT 58.974 45.455 9.63 0.00 46.62 4.34
3095 3144 3.448301 TCCGTCCCATAATGTAAGACGTT 59.552 43.478 9.63 0.00 46.62 3.99
3096 3145 4.081531 TCCGTCCCATAATGTAAGACGTTT 60.082 41.667 9.63 0.00 46.62 3.60
3097 3146 4.632688 CCGTCCCATAATGTAAGACGTTTT 59.367 41.667 9.63 0.00 46.62 2.43
3098 3147 5.122711 CCGTCCCATAATGTAAGACGTTTTT 59.877 40.000 9.63 0.00 46.62 1.94
3143 3192 3.720949 CGTCTTACATTATGGGACGGA 57.279 47.619 20.50 2.30 43.69 4.69
3144 3193 3.639538 CGTCTTACATTATGGGACGGAG 58.360 50.000 20.50 2.74 43.69 4.63
3145 3194 3.552273 CGTCTTACATTATGGGACGGAGG 60.552 52.174 20.50 5.87 43.69 4.30
3146 3195 2.969950 TCTTACATTATGGGACGGAGGG 59.030 50.000 0.00 0.00 0.00 4.30
3147 3196 2.779429 TACATTATGGGACGGAGGGA 57.221 50.000 0.00 0.00 0.00 4.20
3148 3197 1.424638 ACATTATGGGACGGAGGGAG 58.575 55.000 0.00 0.00 0.00 4.30
3322 3371 8.818141 AACATTGGAGTATGTCAATATCTACG 57.182 34.615 0.00 0.00 37.76 3.51
3370 3420 4.764823 TCAGTGAAACCGGCTGATTTTAAT 59.235 37.500 0.00 0.00 37.80 1.40
3461 3511 6.183361 ACGGAATTTCATATAGTGTCCCATCA 60.183 38.462 0.00 0.00 0.00 3.07
3506 3556 0.112995 AGCCCTTTGAGCATTCACCA 59.887 50.000 0.00 0.00 31.71 4.17
3515 3565 2.684374 TGAGCATTCACCATGAATTCCG 59.316 45.455 2.27 0.00 44.03 4.30
3557 3613 0.629058 TCCCTTTCCCCTGTATTGGC 59.371 55.000 0.00 0.00 0.00 4.52
3567 3623 0.106569 CTGTATTGGCCAGCCATCCA 60.107 55.000 13.10 8.52 46.64 3.41
3572 3628 2.124403 GGCCAGCCATCCACTCAG 60.124 66.667 3.12 0.00 35.81 3.35
3630 3686 5.305585 TGACAGTAGATGACAAGGGAAAAC 58.694 41.667 0.00 0.00 30.44 2.43
3660 3716 0.745845 CCTCTGCGCTTTGCTACCAT 60.746 55.000 9.73 0.00 46.63 3.55
3662 3718 0.744414 TCTGCGCTTTGCTACCATCC 60.744 55.000 9.73 0.00 46.63 3.51
3663 3719 2.040213 CTGCGCTTTGCTACCATCCG 62.040 60.000 9.73 0.00 46.63 4.18
3670 3726 0.813610 TTGCTACCATCCGCCAATCG 60.814 55.000 0.00 0.00 38.08 3.34
3678 3734 0.882042 ATCCGCCAATCGATCTGCAC 60.882 55.000 16.46 5.03 41.67 4.57
3679 3735 2.622629 CGCCAATCGATCTGCACG 59.377 61.111 16.46 11.11 41.67 5.34
3688 3745 1.658596 TCGATCTGCACGTGTATTTGC 59.341 47.619 18.38 1.39 39.33 3.68
3689 3746 1.393196 CGATCTGCACGTGTATTTGCA 59.607 47.619 18.38 6.69 46.43 4.08
3702 3759 5.399013 GTGTATTTGCATTACCCAGTGAAC 58.601 41.667 0.00 0.00 0.00 3.18
3710 3767 3.502051 TTACCCAGTGAACCTATCCCT 57.498 47.619 0.00 0.00 0.00 4.20
3712 3769 0.753262 CCCAGTGAACCTATCCCTCG 59.247 60.000 0.00 0.00 0.00 4.63
3723 3780 1.478510 CTATCCCTCGTTGCTCACACT 59.521 52.381 0.00 0.00 0.00 3.55
3790 3848 2.746803 CCGGCGGGAAAAAGTAGCG 61.747 63.158 20.56 0.00 34.06 4.26
3803 3861 2.455674 AGTAGCGAAACATGTCAGCA 57.544 45.000 18.17 5.87 0.00 4.41
3804 3862 2.977914 AGTAGCGAAACATGTCAGCAT 58.022 42.857 18.17 8.96 35.32 3.79
3845 3903 7.390027 CCCTGTTCTATGTCTTATAATCTGGG 58.610 42.308 0.00 0.00 0.00 4.45
3854 3912 5.104109 TGTCTTATAATCTGGGGTTGGGAAG 60.104 44.000 0.00 0.00 0.00 3.46
3912 3970 4.394729 TCGGTTGCATAGAAGAAAAACCT 58.605 39.130 0.00 0.00 35.89 3.50
3925 3983 3.252458 AGAAAAACCTGAAGCGCGTAAAT 59.748 39.130 8.43 0.00 0.00 1.40
3932 3990 1.356527 GAAGCGCGTAAATGGACCGT 61.357 55.000 8.43 0.00 0.00 4.83
3935 3993 2.098233 CGCGTAAATGGACCGTGCT 61.098 57.895 0.00 0.00 0.00 4.40
3937 3995 0.648958 GCGTAAATGGACCGTGCTAC 59.351 55.000 0.00 0.00 0.00 3.58
3938 3996 1.999048 CGTAAATGGACCGTGCTACA 58.001 50.000 6.90 0.00 0.00 2.74
3940 3998 2.737783 CGTAAATGGACCGTGCTACAAA 59.262 45.455 6.90 0.00 0.00 2.83
3941 3999 3.186817 CGTAAATGGACCGTGCTACAAAA 59.813 43.478 6.90 0.00 0.00 2.44
3942 4000 3.915437 AAATGGACCGTGCTACAAAAG 57.085 42.857 0.00 0.00 0.00 2.27
3943 4001 2.851263 ATGGACCGTGCTACAAAAGA 57.149 45.000 0.00 0.00 0.00 2.52
3944 4002 2.623878 TGGACCGTGCTACAAAAGAA 57.376 45.000 0.00 0.00 0.00 2.52
3945 4003 2.920524 TGGACCGTGCTACAAAAGAAA 58.079 42.857 0.00 0.00 0.00 2.52
3946 4004 3.280295 TGGACCGTGCTACAAAAGAAAA 58.720 40.909 0.00 0.00 0.00 2.29
3947 4005 3.314080 TGGACCGTGCTACAAAAGAAAAG 59.686 43.478 0.00 0.00 0.00 2.27
3980 4038 2.038426 TGCGGGTGTGGATAATATGGAG 59.962 50.000 0.00 0.00 0.00 3.86
4066 4124 5.233083 TCACTGTGTGATCAAATCCTCTT 57.767 39.130 7.79 0.00 37.67 2.85
4085 4143 2.391926 TTGTCCTGTCCTGTGTCCTA 57.608 50.000 0.00 0.00 0.00 2.94
4128 4186 7.641411 CGTTCTGGATGAATAAACAGCAAATAG 59.359 37.037 0.00 0.00 36.99 1.73
4173 4231 7.013274 CCACCTGTCGATGATTGGTAATTAAAT 59.987 37.037 0.00 0.00 0.00 1.40
4250 4308 5.391629 CGTACATCTCTACAGTGTAACAGCA 60.392 44.000 4.21 0.00 41.43 4.41
4277 4335 5.682943 AGTGCATGTTTGTATTGTACGTT 57.317 34.783 0.00 0.00 32.19 3.99
4279 4337 6.500041 AGTGCATGTTTGTATTGTACGTTTT 58.500 32.000 0.00 0.00 32.19 2.43
4280 4338 6.416455 AGTGCATGTTTGTATTGTACGTTTTG 59.584 34.615 0.00 0.00 32.19 2.44
4281 4339 6.415280 GTGCATGTTTGTATTGTACGTTTTGA 59.585 34.615 0.00 0.00 0.00 2.69
4307 4367 8.248904 TGTAGTTGGGTATTTATACACCGTAT 57.751 34.615 0.00 0.00 35.82 3.06
4387 4451 6.076981 AGTCCATGTTTGCTCTGTAAAAAG 57.923 37.500 0.00 0.00 0.00 2.27
4395 4459 2.224769 TGCTCTGTAAAAAGGGACAGGG 60.225 50.000 2.44 0.00 45.40 4.45
4577 4644 9.691362 ATTATCGCAAACTGTTAACTGAAAATT 57.309 25.926 18.21 5.85 0.00 1.82
4579 4646 5.231147 TCGCAAACTGTTAACTGAAAATTGC 59.769 36.000 18.21 21.32 37.77 3.56
4599 4666 3.998341 TGCGATGTTTGGGTACTTTAGAC 59.002 43.478 0.00 0.00 0.00 2.59
4600 4667 3.373130 GCGATGTTTGGGTACTTTAGACC 59.627 47.826 0.00 0.00 36.12 3.85
4601 4668 4.571919 CGATGTTTGGGTACTTTAGACCA 58.428 43.478 0.00 0.00 38.86 4.02
4602 4669 5.183228 CGATGTTTGGGTACTTTAGACCAT 58.817 41.667 0.00 0.00 38.86 3.55
4603 4670 6.342906 CGATGTTTGGGTACTTTAGACCATA 58.657 40.000 0.00 0.00 38.86 2.74
4604 4671 6.819649 CGATGTTTGGGTACTTTAGACCATAA 59.180 38.462 0.00 0.00 38.86 1.90
4605 4672 7.497909 CGATGTTTGGGTACTTTAGACCATAAT 59.502 37.037 0.00 0.00 38.86 1.28
4606 4673 9.185680 GATGTTTGGGTACTTTAGACCATAATT 57.814 33.333 0.00 0.00 38.86 1.40
4607 4674 8.943594 TGTTTGGGTACTTTAGACCATAATTT 57.056 30.769 0.00 0.00 38.86 1.82
4643 4710 8.943909 ATAATAACTAGGAACTCGGACAAAAG 57.056 34.615 0.00 0.00 41.75 2.27
4644 4711 4.950205 AACTAGGAACTCGGACAAAAGA 57.050 40.909 0.00 0.00 41.75 2.52
4645 4712 4.950205 ACTAGGAACTCGGACAAAAGAA 57.050 40.909 0.00 0.00 41.75 2.52
4646 4713 5.485209 ACTAGGAACTCGGACAAAAGAAT 57.515 39.130 0.00 0.00 41.75 2.40
4647 4714 6.600882 ACTAGGAACTCGGACAAAAGAATA 57.399 37.500 0.00 0.00 41.75 1.75
4648 4715 7.184067 ACTAGGAACTCGGACAAAAGAATAT 57.816 36.000 0.00 0.00 41.75 1.28
4649 4716 8.302515 ACTAGGAACTCGGACAAAAGAATATA 57.697 34.615 0.00 0.00 41.75 0.86
4650 4717 8.755977 ACTAGGAACTCGGACAAAAGAATATAA 58.244 33.333 0.00 0.00 41.75 0.98
4651 4718 9.595823 CTAGGAACTCGGACAAAAGAATATAAA 57.404 33.333 0.00 0.00 41.75 1.40
4652 4719 8.494016 AGGAACTCGGACAAAAGAATATAAAG 57.506 34.615 0.00 0.00 0.00 1.85
4653 4720 8.319146 AGGAACTCGGACAAAAGAATATAAAGA 58.681 33.333 0.00 0.00 0.00 2.52
4654 4721 8.943002 GGAACTCGGACAAAAGAATATAAAGAA 58.057 33.333 0.00 0.00 0.00 2.52
4672 4739 6.555812 AAAGAAATAAGACAAACGGGAGAC 57.444 37.500 0.00 0.00 0.00 3.36
4685 4752 1.463444 CGGGAGACGAAAATGGAACAC 59.537 52.381 0.00 0.00 45.39 3.32
4686 4753 2.870435 CGGGAGACGAAAATGGAACACT 60.870 50.000 0.00 0.00 45.39 3.55
4687 4754 3.615592 CGGGAGACGAAAATGGAACACTA 60.616 47.826 0.00 0.00 45.39 2.74
4688 4755 4.918166 CGGGAGACGAAAATGGAACACTAT 60.918 45.833 0.00 0.00 45.39 2.12
4689 4756 5.680408 CGGGAGACGAAAATGGAACACTATA 60.680 44.000 0.00 0.00 45.39 1.31
4690 4757 7.657561 CGGGAGACGAAAATGGAACACTATAC 61.658 46.154 0.00 0.00 45.39 1.47
4691 4758 9.913090 CGGGAGACGAAAATGGAACACTATACA 62.913 44.444 0.00 0.00 45.39 2.29
4755 4822 8.879342 TTTTTATGTTAACACCAAGGACATTG 57.121 30.769 11.22 0.00 38.74 2.82
4756 4823 7.825331 TTTATGTTAACACCAAGGACATTGA 57.175 32.000 11.22 0.00 41.83 2.57
4757 4824 7.825331 TTATGTTAACACCAAGGACATTGAA 57.175 32.000 11.22 0.00 41.83 2.69
4758 4825 6.723298 ATGTTAACACCAAGGACATTGAAA 57.277 33.333 11.22 0.00 41.83 2.69
4759 4826 6.531503 TGTTAACACCAAGGACATTGAAAA 57.468 33.333 3.59 0.00 41.83 2.29
4760 4827 7.118496 TGTTAACACCAAGGACATTGAAAAT 57.882 32.000 3.59 0.00 41.83 1.82
4761 4828 7.560368 TGTTAACACCAAGGACATTGAAAATT 58.440 30.769 3.59 0.00 41.83 1.82
4762 4829 8.696374 TGTTAACACCAAGGACATTGAAAATTA 58.304 29.630 3.59 0.00 41.83 1.40
4763 4830 9.535878 GTTAACACCAAGGACATTGAAAATTAA 57.464 29.630 0.42 0.00 41.83 1.40
4766 4833 9.454859 AACACCAAGGACATTGAAAATTAAAAA 57.545 25.926 0.42 0.00 41.83 1.94
4785 4852 2.222227 AAAATTGGGGTGAGAGAGGC 57.778 50.000 0.00 0.00 0.00 4.70
4786 4853 1.376649 AAATTGGGGTGAGAGAGGCT 58.623 50.000 0.00 0.00 0.00 4.58
4787 4854 0.915364 AATTGGGGTGAGAGAGGCTC 59.085 55.000 6.34 6.34 44.21 4.70
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 6.048509 GGGAAATTCTGTGAAAACATGTGTT 58.951 36.000 0.00 0.00 40.50 3.32
28 29 5.128499 TGGGAAATTCTGTGAAAACATGTGT 59.872 36.000 0.00 0.00 0.00 3.72
29 30 5.599732 TGGGAAATTCTGTGAAAACATGTG 58.400 37.500 0.00 0.00 0.00 3.21
30 31 5.867903 TGGGAAATTCTGTGAAAACATGT 57.132 34.783 0.00 0.00 0.00 3.21
31 32 6.282930 ACTTGGGAAATTCTGTGAAAACATG 58.717 36.000 0.00 0.00 0.00 3.21
32 33 6.484364 ACTTGGGAAATTCTGTGAAAACAT 57.516 33.333 0.00 0.00 0.00 2.71
33 34 5.930837 ACTTGGGAAATTCTGTGAAAACA 57.069 34.783 0.00 0.00 0.00 2.83
34 35 8.600625 GTTTTACTTGGGAAATTCTGTGAAAAC 58.399 33.333 0.00 0.00 0.00 2.43
35 36 8.314751 TGTTTTACTTGGGAAATTCTGTGAAAA 58.685 29.630 0.00 0.00 0.00 2.29
36 37 7.841956 TGTTTTACTTGGGAAATTCTGTGAAA 58.158 30.769 0.00 0.00 0.00 2.69
37 38 7.411486 TGTTTTACTTGGGAAATTCTGTGAA 57.589 32.000 0.00 0.00 0.00 3.18
38 39 6.040391 CCTGTTTTACTTGGGAAATTCTGTGA 59.960 38.462 0.00 0.00 0.00 3.58
39 40 6.215845 CCTGTTTTACTTGGGAAATTCTGTG 58.784 40.000 0.00 0.00 0.00 3.66
40 41 5.304357 CCCTGTTTTACTTGGGAAATTCTGT 59.696 40.000 0.00 0.00 42.11 3.41
41 42 5.279456 CCCCTGTTTTACTTGGGAAATTCTG 60.279 44.000 0.00 0.00 42.11 3.02
42 43 4.838423 CCCCTGTTTTACTTGGGAAATTCT 59.162 41.667 0.00 0.00 42.11 2.40
43 44 4.020573 CCCCCTGTTTTACTTGGGAAATTC 60.021 45.833 0.00 0.00 42.11 2.17
44 45 3.907474 CCCCCTGTTTTACTTGGGAAATT 59.093 43.478 0.00 0.00 42.11 1.82
45 46 3.116512 ACCCCCTGTTTTACTTGGGAAAT 60.117 43.478 0.00 0.00 42.11 2.17
46 47 2.247897 ACCCCCTGTTTTACTTGGGAAA 59.752 45.455 0.00 0.00 42.11 3.13
47 48 1.860906 ACCCCCTGTTTTACTTGGGAA 59.139 47.619 0.00 0.00 42.11 3.97
48 49 1.536644 ACCCCCTGTTTTACTTGGGA 58.463 50.000 0.00 0.00 42.11 4.37
49 50 1.967779 CAACCCCCTGTTTTACTTGGG 59.032 52.381 0.00 0.00 39.37 4.12
50 51 2.952116 TCAACCCCCTGTTTTACTTGG 58.048 47.619 0.00 0.00 34.00 3.61
51 52 4.021456 GGATTCAACCCCCTGTTTTACTTG 60.021 45.833 0.00 0.00 34.00 3.16
52 53 4.140782 AGGATTCAACCCCCTGTTTTACTT 60.141 41.667 0.00 0.00 34.00 2.24
53 54 3.401342 AGGATTCAACCCCCTGTTTTACT 59.599 43.478 0.00 0.00 34.00 2.24
54 55 3.509967 CAGGATTCAACCCCCTGTTTTAC 59.490 47.826 0.00 0.00 41.81 2.01
55 56 3.773560 CAGGATTCAACCCCCTGTTTTA 58.226 45.455 0.00 0.00 41.81 1.52
56 57 2.608623 CAGGATTCAACCCCCTGTTTT 58.391 47.619 0.00 0.00 41.81 2.43
57 58 1.827245 GCAGGATTCAACCCCCTGTTT 60.827 52.381 0.00 0.00 46.86 2.83
58 59 0.251787 GCAGGATTCAACCCCCTGTT 60.252 55.000 0.00 0.00 46.86 3.16
59 60 1.142688 AGCAGGATTCAACCCCCTGT 61.143 55.000 0.00 0.00 46.86 4.00
61 62 1.693640 CAGCAGGATTCAACCCCCT 59.306 57.895 0.00 0.00 0.00 4.79
62 63 1.380380 CCAGCAGGATTCAACCCCC 60.380 63.158 0.00 0.00 36.89 5.40
63 64 1.380380 CCCAGCAGGATTCAACCCC 60.380 63.158 0.00 0.00 38.24 4.95
64 65 0.039618 TTCCCAGCAGGATTCAACCC 59.960 55.000 0.00 0.00 46.94 4.11
65 66 1.821136 CTTTCCCAGCAGGATTCAACC 59.179 52.381 0.00 0.00 46.94 3.77
66 67 2.795329 TCTTTCCCAGCAGGATTCAAC 58.205 47.619 0.00 0.00 46.94 3.18
67 68 3.524095 TTCTTTCCCAGCAGGATTCAA 57.476 42.857 0.00 0.00 46.94 2.69
68 69 3.744940 ATTCTTTCCCAGCAGGATTCA 57.255 42.857 0.00 0.00 46.94 2.57
69 70 6.538263 AGTATATTCTTTCCCAGCAGGATTC 58.462 40.000 0.00 0.00 46.94 2.52
70 71 6.466470 GGAGTATATTCTTTCCCAGCAGGATT 60.466 42.308 0.00 0.00 46.94 3.01
71 72 5.013599 GGAGTATATTCTTTCCCAGCAGGAT 59.986 44.000 0.00 0.00 46.94 3.24
72 73 4.348168 GGAGTATATTCTTTCCCAGCAGGA 59.652 45.833 0.00 0.00 45.68 3.86
73 74 4.103153 TGGAGTATATTCTTTCCCAGCAGG 59.897 45.833 0.00 0.00 0.00 4.85
74 75 5.296151 TGGAGTATATTCTTTCCCAGCAG 57.704 43.478 0.00 0.00 0.00 4.24
75 76 5.221925 GGATGGAGTATATTCTTTCCCAGCA 60.222 44.000 0.00 0.00 30.96 4.41
76 77 5.249420 GGATGGAGTATATTCTTTCCCAGC 58.751 45.833 0.00 0.00 0.00 4.85
77 78 5.012148 ACGGATGGAGTATATTCTTTCCCAG 59.988 44.000 9.69 3.03 0.00 4.45
78 79 4.905456 ACGGATGGAGTATATTCTTTCCCA 59.095 41.667 9.69 0.00 0.00 4.37
79 80 5.485209 ACGGATGGAGTATATTCTTTCCC 57.515 43.478 9.69 0.00 0.00 3.97
80 81 5.932883 GGAACGGATGGAGTATATTCTTTCC 59.067 44.000 0.00 2.06 0.00 3.13
81 82 6.760291 AGGAACGGATGGAGTATATTCTTTC 58.240 40.000 0.00 0.00 0.00 2.62
82 83 6.749036 AGGAACGGATGGAGTATATTCTTT 57.251 37.500 0.00 0.00 0.00 2.52
83 84 7.850935 TTAGGAACGGATGGAGTATATTCTT 57.149 36.000 0.00 0.00 0.00 2.52
84 85 7.850935 TTTAGGAACGGATGGAGTATATTCT 57.149 36.000 0.00 0.00 0.00 2.40
87 88 9.488762 TCATATTTAGGAACGGATGGAGTATAT 57.511 33.333 0.00 0.00 0.00 0.86
88 89 8.888836 TCATATTTAGGAACGGATGGAGTATA 57.111 34.615 0.00 0.00 0.00 1.47
89 90 7.455008 ACTCATATTTAGGAACGGATGGAGTAT 59.545 37.037 0.00 0.00 0.00 2.12
90 91 6.781014 ACTCATATTTAGGAACGGATGGAGTA 59.219 38.462 0.00 0.00 0.00 2.59
91 92 5.602978 ACTCATATTTAGGAACGGATGGAGT 59.397 40.000 0.00 0.00 0.00 3.85
92 93 6.015010 AGACTCATATTTAGGAACGGATGGAG 60.015 42.308 0.00 0.00 0.00 3.86
93 94 5.839063 AGACTCATATTTAGGAACGGATGGA 59.161 40.000 0.00 0.00 0.00 3.41
94 95 6.102897 AGACTCATATTTAGGAACGGATGG 57.897 41.667 0.00 0.00 0.00 3.51
95 96 9.712305 ATAAAGACTCATATTTAGGAACGGATG 57.288 33.333 0.00 0.00 0.00 3.51
121 122 9.476202 CGTATGTGGTTCATAATGAAATCTCTA 57.524 33.333 0.00 0.00 38.22 2.43
122 123 8.204160 TCGTATGTGGTTCATAATGAAATCTCT 58.796 33.333 0.00 0.00 38.22 3.10
123 124 8.365399 TCGTATGTGGTTCATAATGAAATCTC 57.635 34.615 0.00 0.00 38.22 2.75
124 125 8.731275 TTCGTATGTGGTTCATAATGAAATCT 57.269 30.769 0.00 0.00 38.22 2.40
125 126 9.385902 CATTCGTATGTGGTTCATAATGAAATC 57.614 33.333 0.00 0.00 38.22 2.17
126 127 8.902806 ACATTCGTATGTGGTTCATAATGAAAT 58.097 29.630 6.89 0.00 43.29 2.17
127 128 8.275015 ACATTCGTATGTGGTTCATAATGAAA 57.725 30.769 6.89 0.00 43.29 2.69
128 129 7.857734 ACATTCGTATGTGGTTCATAATGAA 57.142 32.000 6.89 0.00 43.29 2.57
135 136 9.855021 CATCTATATACATTCGTATGTGGTTCA 57.145 33.333 16.91 0.00 44.56 3.18
136 137 8.808529 GCATCTATATACATTCGTATGTGGTTC 58.191 37.037 16.91 0.00 44.56 3.62
137 138 8.311109 TGCATCTATATACATTCGTATGTGGTT 58.689 33.333 16.91 5.39 44.56 3.67
138 139 7.836842 TGCATCTATATACATTCGTATGTGGT 58.163 34.615 16.91 8.59 44.56 4.16
139 140 8.877808 ATGCATCTATATACATTCGTATGTGG 57.122 34.615 16.91 3.59 44.56 4.17
168 169 9.559958 CGAAGCAAAATGAATAAATCTACACTT 57.440 29.630 0.00 0.00 0.00 3.16
169 170 8.730680 ACGAAGCAAAATGAATAAATCTACACT 58.269 29.630 0.00 0.00 0.00 3.55
170 171 8.895932 ACGAAGCAAAATGAATAAATCTACAC 57.104 30.769 0.00 0.00 0.00 2.90
177 178 9.982291 GACTACATACGAAGCAAAATGAATAAA 57.018 29.630 0.00 0.00 0.00 1.40
178 179 8.609176 GGACTACATACGAAGCAAAATGAATAA 58.391 33.333 0.00 0.00 0.00 1.40
179 180 7.766738 TGGACTACATACGAAGCAAAATGAATA 59.233 33.333 0.00 0.00 0.00 1.75
180 181 6.597672 TGGACTACATACGAAGCAAAATGAAT 59.402 34.615 0.00 0.00 0.00 2.57
181 182 5.935206 TGGACTACATACGAAGCAAAATGAA 59.065 36.000 0.00 0.00 0.00 2.57
182 183 5.350365 GTGGACTACATACGAAGCAAAATGA 59.650 40.000 0.00 0.00 0.00 2.57
183 184 5.447279 GGTGGACTACATACGAAGCAAAATG 60.447 44.000 0.00 0.00 0.00 2.32
184 185 4.634443 GGTGGACTACATACGAAGCAAAAT 59.366 41.667 0.00 0.00 0.00 1.82
185 186 3.998341 GGTGGACTACATACGAAGCAAAA 59.002 43.478 0.00 0.00 0.00 2.44
186 187 3.259876 AGGTGGACTACATACGAAGCAAA 59.740 43.478 0.00 0.00 0.00 3.68
187 188 2.829720 AGGTGGACTACATACGAAGCAA 59.170 45.455 0.00 0.00 0.00 3.91
188 189 2.453521 AGGTGGACTACATACGAAGCA 58.546 47.619 0.00 0.00 0.00 3.91
189 190 3.631227 ACTAGGTGGACTACATACGAAGC 59.369 47.826 0.00 0.00 0.00 3.86
190 191 5.171147 CACTAGGTGGACTACATACGAAG 57.829 47.826 0.00 0.00 0.00 3.79
202 203 8.235230 ATCTTTATAGAGATTCCACTAGGTGGA 58.765 37.037 14.51 14.51 46.19 4.02
203 204 8.429237 ATCTTTATAGAGATTCCACTAGGTGG 57.571 38.462 10.16 10.16 43.42 4.61
223 224 9.350951 CCCTCCGTTCCTAAATATAAAATCTTT 57.649 33.333 0.00 0.00 0.00 2.52
224 225 8.720537 TCCCTCCGTTCCTAAATATAAAATCTT 58.279 33.333 0.00 0.00 0.00 2.40
225 226 8.271398 TCCCTCCGTTCCTAAATATAAAATCT 57.729 34.615 0.00 0.00 0.00 2.40
226 227 8.155510 ACTCCCTCCGTTCCTAAATATAAAATC 58.844 37.037 0.00 0.00 0.00 2.17
227 228 8.042286 ACTCCCTCCGTTCCTAAATATAAAAT 57.958 34.615 0.00 0.00 0.00 1.82
228 229 7.441903 ACTCCCTCCGTTCCTAAATATAAAA 57.558 36.000 0.00 0.00 0.00 1.52
229 230 8.006564 TCTACTCCCTCCGTTCCTAAATATAAA 58.993 37.037 0.00 0.00 0.00 1.40
230 231 7.529555 TCTACTCCCTCCGTTCCTAAATATAA 58.470 38.462 0.00 0.00 0.00 0.98
231 232 7.095183 TCTACTCCCTCCGTTCCTAAATATA 57.905 40.000 0.00 0.00 0.00 0.86
232 233 5.961897 TCTACTCCCTCCGTTCCTAAATAT 58.038 41.667 0.00 0.00 0.00 1.28
233 234 5.393068 TCTACTCCCTCCGTTCCTAAATA 57.607 43.478 0.00 0.00 0.00 1.40
234 235 4.261411 TCTACTCCCTCCGTTCCTAAAT 57.739 45.455 0.00 0.00 0.00 1.40
235 236 3.744940 TCTACTCCCTCCGTTCCTAAA 57.255 47.619 0.00 0.00 0.00 1.85
236 237 3.967467 ATCTACTCCCTCCGTTCCTAA 57.033 47.619 0.00 0.00 0.00 2.69
237 238 6.905067 ATATATCTACTCCCTCCGTTCCTA 57.095 41.667 0.00 0.00 0.00 2.94
238 239 5.799978 ATATATCTACTCCCTCCGTTCCT 57.200 43.478 0.00 0.00 0.00 3.36
239 240 8.658619 TCTATATATATCTACTCCCTCCGTTCC 58.341 40.741 0.00 0.00 0.00 3.62
240 241 9.715121 CTCTATATATATCTACTCCCTCCGTTC 57.285 40.741 0.00 0.00 0.00 3.95
241 242 9.449896 TCTCTATATATATCTACTCCCTCCGTT 57.550 37.037 0.00 0.00 0.00 4.44
242 243 9.096823 CTCTCTATATATATCTACTCCCTCCGT 57.903 40.741 0.00 0.00 0.00 4.69
243 244 9.316594 TCTCTCTATATATATCTACTCCCTCCG 57.683 40.741 0.00 0.00 0.00 4.63
263 264 7.984617 CGGAATTCCTTTTCTTTATCTCTCTCT 59.015 37.037 22.05 0.00 0.00 3.10
264 265 7.766738 ACGGAATTCCTTTTCTTTATCTCTCTC 59.233 37.037 22.05 0.00 0.00 3.20
265 266 7.625469 ACGGAATTCCTTTTCTTTATCTCTCT 58.375 34.615 22.05 0.00 0.00 3.10
266 267 7.851387 ACGGAATTCCTTTTCTTTATCTCTC 57.149 36.000 22.05 0.00 0.00 3.20
287 288 0.941542 ACCGTGTCAATGAACAACGG 59.058 50.000 23.28 23.28 43.35 4.44
288 289 1.396690 CGACCGTGTCAATGAACAACG 60.397 52.381 7.22 7.22 32.09 4.10
380 399 1.292541 GGAGGAGAAGACCGCGTTT 59.707 57.895 4.92 0.00 34.73 3.60
712 737 3.127533 AGGGAAGCAACGCGATGC 61.128 61.111 31.07 31.07 46.78 3.91
743 769 2.995574 AACCTCTGACCGACCCCG 60.996 66.667 0.00 0.00 0.00 5.73
746 772 2.663196 CCCAACCTCTGACCGACC 59.337 66.667 0.00 0.00 0.00 4.79
747 773 2.047179 GCCCAACCTCTGACCGAC 60.047 66.667 0.00 0.00 0.00 4.79
750 776 0.462047 CATACGCCCAACCTCTGACC 60.462 60.000 0.00 0.00 0.00 4.02
751 777 1.090052 GCATACGCCCAACCTCTGAC 61.090 60.000 0.00 0.00 0.00 3.51
759 785 0.464036 CTACTCCAGCATACGCCCAA 59.536 55.000 0.00 0.00 39.83 4.12
776 802 0.255890 GGACCCAAATCCTGCTGCTA 59.744 55.000 0.00 0.00 35.68 3.49
805 831 2.859273 AATCGCCAGGTGAAGCTCCG 62.859 60.000 6.84 0.00 0.00 4.63
892 918 1.135139 CATCCGTATCCTATCGCCCAG 59.865 57.143 0.00 0.00 0.00 4.45
980 1006 1.937546 GCCTGCAAAATCCGGACCAG 61.938 60.000 6.12 8.54 0.00 4.00
1101 1127 2.039951 CCGTTACCTGGAGGGGGA 59.960 66.667 0.00 0.00 40.27 4.81
1104 1130 2.375345 ATGGCCGTTACCTGGAGGG 61.375 63.158 0.00 0.00 40.27 4.30
1168 1194 4.142204 ACATGACACAATCTTGTTTGCACA 60.142 37.500 0.00 0.00 41.68 4.57
1182 1208 9.761504 ATTATCAACAAAATTGAACATGACACA 57.238 25.926 0.00 0.00 31.55 3.72
1240 1272 1.534163 CGCTACCCATTCATCAGCATG 59.466 52.381 0.00 0.00 37.54 4.06
1259 1291 0.322456 TGTGCCCCTCCTTCATTTCG 60.322 55.000 0.00 0.00 0.00 3.46
1334 1366 6.565974 AGGAATCCATCTACTATCTTAGGCA 58.434 40.000 0.61 0.00 0.00 4.75
1387 1419 4.202245 TGTGCAAGTTAAGCTAGTAGGG 57.798 45.455 0.00 0.00 0.00 3.53
1388 1420 5.005779 CGAATGTGCAAGTTAAGCTAGTAGG 59.994 44.000 0.00 0.00 0.00 3.18
1402 1434 0.713329 CACGATCGACGAATGTGCAA 59.287 50.000 24.34 0.00 45.77 4.08
1406 1438 1.625616 GAACCACGATCGACGAATGT 58.374 50.000 24.34 6.15 45.77 2.71
1412 1444 3.070060 GTGCGAACCACGATCGAC 58.930 61.111 24.34 2.47 45.77 4.20
1483 1519 1.663702 CCCGCCATACCGATCGAAC 60.664 63.158 18.66 0.00 0.00 3.95
1500 1536 1.636003 ACCTCAATCTTCTGAACCCCC 59.364 52.381 0.00 0.00 0.00 5.40
1579 1616 2.748209 ATAGGAAAAATCCCCACGGG 57.252 50.000 0.00 0.00 46.11 5.28
1664 1701 7.363007 GGTCAAATAAGGAAGGGAAAGTTCATC 60.363 40.741 0.00 0.00 0.00 2.92
1841 1879 9.988815 GGAAGATGTATCTAATGTAGACAACAT 57.011 33.333 11.88 11.88 42.84 2.71
1870 1908 4.865905 ACACCCAATATACATGGCAAAGA 58.134 39.130 0.00 0.00 36.58 2.52
2355 2395 7.309770 AGAACAGATTTCCTACTTTCTGACT 57.690 36.000 5.84 2.71 38.25 3.41
2362 2402 9.804758 CGACTTTATAGAACAGATTTCCTACTT 57.195 33.333 0.00 0.00 0.00 2.24
2363 2403 9.186837 TCGACTTTATAGAACAGATTTCCTACT 57.813 33.333 0.00 0.00 0.00 2.57
2364 2404 9.798994 TTCGACTTTATAGAACAGATTTCCTAC 57.201 33.333 0.00 0.00 0.00 3.18
2366 2406 9.892130 AATTCGACTTTATAGAACAGATTTCCT 57.108 29.630 0.00 0.00 0.00 3.36
2367 2407 9.922305 CAATTCGACTTTATAGAACAGATTTCC 57.078 33.333 0.00 0.00 0.00 3.13
2370 2410 9.099454 GGTCAATTCGACTTTATAGAACAGATT 57.901 33.333 7.61 0.00 44.70 2.40
2371 2411 8.258007 TGGTCAATTCGACTTTATAGAACAGAT 58.742 33.333 7.61 0.00 44.70 2.90
2372 2412 7.608153 TGGTCAATTCGACTTTATAGAACAGA 58.392 34.615 7.61 0.00 44.70 3.41
2373 2413 7.827819 TGGTCAATTCGACTTTATAGAACAG 57.172 36.000 7.61 0.00 44.70 3.16
2374 2414 7.118680 GGTTGGTCAATTCGACTTTATAGAACA 59.881 37.037 7.61 0.00 44.70 3.18
2375 2415 7.333672 AGGTTGGTCAATTCGACTTTATAGAAC 59.666 37.037 7.61 0.00 44.70 3.01
2376 2416 7.391620 AGGTTGGTCAATTCGACTTTATAGAA 58.608 34.615 7.61 0.00 44.70 2.10
2377 2417 6.942976 AGGTTGGTCAATTCGACTTTATAGA 58.057 36.000 7.61 0.00 44.70 1.98
2378 2418 7.119262 ACAAGGTTGGTCAATTCGACTTTATAG 59.881 37.037 7.61 0.00 44.70 1.31
2379 2419 6.938030 ACAAGGTTGGTCAATTCGACTTTATA 59.062 34.615 7.61 0.00 44.70 0.98
2380 2420 5.768164 ACAAGGTTGGTCAATTCGACTTTAT 59.232 36.000 7.61 0.00 44.70 1.40
2381 2421 5.127491 ACAAGGTTGGTCAATTCGACTTTA 58.873 37.500 7.61 0.00 44.70 1.85
2382 2422 3.951680 ACAAGGTTGGTCAATTCGACTTT 59.048 39.130 7.61 0.00 44.70 2.66
2383 2423 3.551846 ACAAGGTTGGTCAATTCGACTT 58.448 40.909 7.61 0.00 44.70 3.01
2384 2424 3.208747 ACAAGGTTGGTCAATTCGACT 57.791 42.857 7.61 0.00 44.70 4.18
2385 2425 4.514066 ACTTACAAGGTTGGTCAATTCGAC 59.486 41.667 0.00 0.90 44.57 4.20
2386 2426 4.710324 ACTTACAAGGTTGGTCAATTCGA 58.290 39.130 0.00 0.00 0.00 3.71
2387 2427 5.008217 TCAACTTACAAGGTTGGTCAATTCG 59.992 40.000 6.72 0.00 42.76 3.34
2388 2428 6.385649 TCAACTTACAAGGTTGGTCAATTC 57.614 37.500 6.72 0.00 42.76 2.17
2389 2429 6.783708 TTCAACTTACAAGGTTGGTCAATT 57.216 33.333 6.72 0.00 42.76 2.32
2390 2430 6.783708 TTTCAACTTACAAGGTTGGTCAAT 57.216 33.333 6.72 0.00 42.76 2.57
2391 2431 6.783708 ATTTCAACTTACAAGGTTGGTCAA 57.216 33.333 6.72 0.10 42.76 3.18
2392 2432 6.783708 AATTTCAACTTACAAGGTTGGTCA 57.216 33.333 6.72 0.00 42.76 4.02
2393 2433 9.244799 CTAAAATTTCAACTTACAAGGTTGGTC 57.755 33.333 6.72 0.00 42.76 4.02
2394 2434 8.755028 ACTAAAATTTCAACTTACAAGGTTGGT 58.245 29.630 6.72 0.00 42.76 3.67
2395 2435 9.594478 AACTAAAATTTCAACTTACAAGGTTGG 57.406 29.630 6.72 0.00 42.76 3.77
2576 2618 7.402640 CGATCAAACTTACTAGAAAATCAGCC 58.597 38.462 0.00 0.00 0.00 4.85
2613 2655 8.321716 GTCTTATATTTACAGCTTGAGACAACG 58.678 37.037 0.00 0.00 33.17 4.10
2655 2697 5.337578 ACAAAACAACCAGCAATGTACTT 57.662 34.783 0.00 0.00 0.00 2.24
2659 2701 5.956068 AAAAACAAAACAACCAGCAATGT 57.044 30.435 0.00 0.00 0.00 2.71
2684 2726 3.509575 TCCATAAATGCAGGGTTTGTGAC 59.490 43.478 8.95 0.00 31.72 3.67
2813 2855 5.957798 AGCACATGACATAAGGTGAAAATG 58.042 37.500 0.00 0.00 33.16 2.32
2887 2930 1.069296 CACATGCACAACGGTAACAGG 60.069 52.381 0.00 0.00 0.00 4.00
3033 3082 1.972872 AGACACACAAAGGGAGCTTG 58.027 50.000 0.00 0.00 0.00 4.01
3066 3115 2.090943 ACATTATGGGACGGAGGGAGTA 60.091 50.000 0.00 0.00 0.00 2.59
3067 3116 1.344087 ACATTATGGGACGGAGGGAGT 60.344 52.381 0.00 0.00 0.00 3.85
3068 3117 1.424638 ACATTATGGGACGGAGGGAG 58.575 55.000 0.00 0.00 0.00 4.30
3069 3118 2.779429 TACATTATGGGACGGAGGGA 57.221 50.000 0.00 0.00 0.00 4.20
3070 3119 2.969950 TCTTACATTATGGGACGGAGGG 59.030 50.000 0.00 0.00 0.00 4.30
3071 3120 3.552273 CGTCTTACATTATGGGACGGAGG 60.552 52.174 20.50 5.87 43.69 4.30
3072 3121 3.639538 CGTCTTACATTATGGGACGGAG 58.360 50.000 20.50 2.74 43.69 4.63
3073 3122 3.720949 CGTCTTACATTATGGGACGGA 57.279 47.619 20.50 2.30 43.69 4.69
3118 3167 5.122711 CCGTCCCATAATGTAAGACGTTTTT 59.877 40.000 9.63 0.00 46.62 1.94
3119 3168 4.632688 CCGTCCCATAATGTAAGACGTTTT 59.367 41.667 9.63 0.00 46.62 2.43
3120 3169 4.081531 TCCGTCCCATAATGTAAGACGTTT 60.082 41.667 9.63 0.00 46.62 3.60
3121 3170 3.448301 TCCGTCCCATAATGTAAGACGTT 59.552 43.478 9.63 0.00 46.62 3.99
3122 3171 3.025978 TCCGTCCCATAATGTAAGACGT 58.974 45.455 9.63 0.00 46.62 4.34
3124 3173 3.244112 CCCTCCGTCCCATAATGTAAGAC 60.244 52.174 0.00 0.00 0.00 3.01
3125 3174 2.969950 CCCTCCGTCCCATAATGTAAGA 59.030 50.000 0.00 0.00 0.00 2.10
3126 3175 2.969950 TCCCTCCGTCCCATAATGTAAG 59.030 50.000 0.00 0.00 0.00 2.34
3127 3176 2.969950 CTCCCTCCGTCCCATAATGTAA 59.030 50.000 0.00 0.00 0.00 2.41
3128 3177 2.090943 ACTCCCTCCGTCCCATAATGTA 60.091 50.000 0.00 0.00 0.00 2.29
3129 3178 1.344087 ACTCCCTCCGTCCCATAATGT 60.344 52.381 0.00 0.00 0.00 2.71
3130 3179 1.424638 ACTCCCTCCGTCCCATAATG 58.575 55.000 0.00 0.00 0.00 1.90
3131 3180 3.562108 ATACTCCCTCCGTCCCATAAT 57.438 47.619 0.00 0.00 0.00 1.28
3132 3181 3.339713 AATACTCCCTCCGTCCCATAA 57.660 47.619 0.00 0.00 0.00 1.90
3133 3182 3.339713 AAATACTCCCTCCGTCCCATA 57.660 47.619 0.00 0.00 0.00 2.74
3134 3183 2.191981 AAATACTCCCTCCGTCCCAT 57.808 50.000 0.00 0.00 0.00 4.00
3135 3184 2.852714 TAAATACTCCCTCCGTCCCA 57.147 50.000 0.00 0.00 0.00 4.37
3136 3185 3.258622 CAGATAAATACTCCCTCCGTCCC 59.741 52.174 0.00 0.00 0.00 4.46
3137 3186 3.896272 ACAGATAAATACTCCCTCCGTCC 59.104 47.826 0.00 0.00 0.00 4.79
3138 3187 5.302313 AGAACAGATAAATACTCCCTCCGTC 59.698 44.000 0.00 0.00 0.00 4.79
3139 3188 5.209659 AGAACAGATAAATACTCCCTCCGT 58.790 41.667 0.00 0.00 0.00 4.69
3140 3189 5.279056 GGAGAACAGATAAATACTCCCTCCG 60.279 48.000 0.00 0.00 38.23 4.63
3141 3190 5.602978 TGGAGAACAGATAAATACTCCCTCC 59.397 44.000 0.00 0.00 41.93 4.30
3142 3191 6.325286 AGTGGAGAACAGATAAATACTCCCTC 59.675 42.308 0.00 0.00 41.93 4.30
3143 3192 6.206042 AGTGGAGAACAGATAAATACTCCCT 58.794 40.000 0.00 0.00 41.93 4.20
3144 3193 6.487299 AGTGGAGAACAGATAAATACTCCC 57.513 41.667 0.00 0.00 41.93 4.30
3145 3194 7.492994 GTCAAGTGGAGAACAGATAAATACTCC 59.507 40.741 0.00 0.00 42.64 3.85
3146 3195 7.221067 CGTCAAGTGGAGAACAGATAAATACTC 59.779 40.741 0.00 0.00 0.00 2.59
3147 3196 7.036220 CGTCAAGTGGAGAACAGATAAATACT 58.964 38.462 0.00 0.00 0.00 2.12
3148 3197 7.033791 TCGTCAAGTGGAGAACAGATAAATAC 58.966 38.462 0.00 0.00 0.00 1.89
3315 3364 5.580691 CAGCACAAAGAATCCAACGTAGATA 59.419 40.000 1.74 0.00 0.00 1.98
3320 3369 1.001378 GCAGCACAAAGAATCCAACGT 60.001 47.619 0.00 0.00 0.00 3.99
3322 3371 2.798976 TGCAGCACAAAGAATCCAAC 57.201 45.000 0.00 0.00 0.00 3.77
3461 3511 2.113860 ATGCACATACCGCAGAAGTT 57.886 45.000 0.00 0.00 43.88 2.66
3557 3613 1.153489 CGACTGAGTGGATGGCTGG 60.153 63.158 0.00 0.00 0.00 4.85
3567 3623 2.596452 CGTTACATTCTGCGACTGAGT 58.404 47.619 0.00 0.00 0.00 3.41
3572 3628 0.719465 CCACCGTTACATTCTGCGAC 59.281 55.000 0.00 0.00 0.00 5.19
3630 3686 2.512515 GCAGAGGCGGCTTACCAG 60.513 66.667 14.76 2.79 34.57 4.00
3660 3716 1.521457 GTGCAGATCGATTGGCGGA 60.521 57.895 14.84 0.00 41.33 5.54
3662 3718 2.167219 ACGTGCAGATCGATTGGCG 61.167 57.895 14.84 10.86 42.69 5.69
3663 3719 1.349627 CACGTGCAGATCGATTGGC 59.650 57.895 0.82 13.47 0.00 4.52
3678 3734 3.687212 TCACTGGGTAATGCAAATACACG 59.313 43.478 13.20 9.26 28.96 4.49
3679 3735 5.399013 GTTCACTGGGTAATGCAAATACAC 58.601 41.667 13.20 10.73 0.00 2.90
3688 3745 3.716872 AGGGATAGGTTCACTGGGTAATG 59.283 47.826 0.00 0.00 36.46 1.90
3689 3746 3.974642 GAGGGATAGGTTCACTGGGTAAT 59.025 47.826 0.00 0.00 38.59 1.89
3692 3749 1.880941 GAGGGATAGGTTCACTGGGT 58.119 55.000 0.00 0.00 38.59 4.51
3702 3759 0.824109 TGTGAGCAACGAGGGATAGG 59.176 55.000 0.00 0.00 0.00 2.57
3710 3767 1.287815 CGGGTAGTGTGAGCAACGA 59.712 57.895 0.00 0.00 0.00 3.85
3712 3769 0.865769 CAACGGGTAGTGTGAGCAAC 59.134 55.000 0.00 0.00 0.00 4.17
3723 3780 1.801771 CTGCGAAAATGTCAACGGGTA 59.198 47.619 0.00 0.00 0.00 3.69
3790 3848 5.119931 TGGTACAAATGCTGACATGTTTC 57.880 39.130 0.00 0.00 36.36 2.78
3845 3903 7.498239 GGAGTATAATACAAAGTCTTCCCAACC 59.502 40.741 0.00 0.00 0.00 3.77
3854 3912 7.707035 CACCAGACAGGAGTATAATACAAAGTC 59.293 40.741 0.00 0.00 41.22 3.01
3912 3970 1.355796 CGGTCCATTTACGCGCTTCA 61.356 55.000 5.73 0.00 0.00 3.02
3925 3983 2.623878 TTCTTTTGTAGCACGGTCCA 57.376 45.000 0.00 0.00 0.00 4.02
3954 4012 0.907704 TTATCCACACCCGCACTCCT 60.908 55.000 0.00 0.00 0.00 3.69
3955 4013 0.180406 ATTATCCACACCCGCACTCC 59.820 55.000 0.00 0.00 0.00 3.85
3980 4038 5.929992 GGGGGTAAGCAAAATACAGTTTTTC 59.070 40.000 0.00 0.00 0.00 2.29
4066 4124 2.391926 TAGGACACAGGACAGGACAA 57.608 50.000 0.00 0.00 0.00 3.18
4085 4143 1.764054 CGAGAGGCCCCTTCAGGAT 60.764 63.158 0.00 0.00 38.24 3.24
4128 4186 0.386838 GGGCCAGTCATATGCAAAGC 59.613 55.000 4.39 0.00 0.00 3.51
4222 4280 8.098220 TGTTACACTGTAGAGATGTACGTAAA 57.902 34.615 0.00 0.00 0.00 2.01
4223 4281 7.624974 GCTGTTACACTGTAGAGATGTACGTAA 60.625 40.741 0.00 0.00 0.00 3.18
4241 4299 5.703978 ACATGCACTTATTTGCTGTTACA 57.296 34.783 0.00 0.00 43.41 2.41
4245 4303 4.947645 ACAAACATGCACTTATTTGCTGT 58.052 34.783 11.61 0.00 43.41 4.40
4250 4308 8.293867 ACGTACAATACAAACATGCACTTATTT 58.706 29.630 0.00 0.00 0.00 1.40
4277 4335 9.398538 GGTGTATAAATACCCAACTACATCAAA 57.601 33.333 0.00 0.00 30.85 2.69
4279 4337 7.147689 ACGGTGTATAAATACCCAACTACATCA 60.148 37.037 0.00 0.00 33.44 3.07
4280 4338 7.212274 ACGGTGTATAAATACCCAACTACATC 58.788 38.462 0.00 0.00 33.44 3.06
4281 4339 7.128234 ACGGTGTATAAATACCCAACTACAT 57.872 36.000 0.00 0.00 33.44 2.29
4307 4367 0.546507 TGGCCCAGTACCATGTCAGA 60.547 55.000 0.00 0.00 30.29 3.27
4387 4451 1.528309 CAACACCACACCCTGTCCC 60.528 63.158 0.00 0.00 0.00 4.46
4395 4459 7.704472 TCAGAAAATAACATTTCAACACCACAC 59.296 33.333 2.99 0.00 40.89 3.82
4549 4616 7.428282 TTCAGTTAACAGTTTGCGATAATGA 57.572 32.000 8.61 0.00 0.00 2.57
4550 4617 8.500837 TTTTCAGTTAACAGTTTGCGATAATG 57.499 30.769 8.61 0.00 0.00 1.90
4567 4634 4.057432 CCCAAACATCGCAATTTTCAGTT 58.943 39.130 0.00 0.00 0.00 3.16
4577 4644 3.998341 GTCTAAAGTACCCAAACATCGCA 59.002 43.478 0.00 0.00 0.00 5.10
4579 4646 4.571919 TGGTCTAAAGTACCCAAACATCG 58.428 43.478 0.00 0.00 36.06 3.84
4617 4684 9.379791 CTTTTGTCCGAGTTCCTAGTTATTATT 57.620 33.333 0.00 0.00 0.00 1.40
4618 4685 8.755977 TCTTTTGTCCGAGTTCCTAGTTATTAT 58.244 33.333 0.00 0.00 0.00 1.28
4619 4686 8.125978 TCTTTTGTCCGAGTTCCTAGTTATTA 57.874 34.615 0.00 0.00 0.00 0.98
4620 4687 7.001099 TCTTTTGTCCGAGTTCCTAGTTATT 57.999 36.000 0.00 0.00 0.00 1.40
4621 4688 6.600882 TCTTTTGTCCGAGTTCCTAGTTAT 57.399 37.500 0.00 0.00 0.00 1.89
4622 4689 6.409524 TTCTTTTGTCCGAGTTCCTAGTTA 57.590 37.500 0.00 0.00 0.00 2.24
4623 4690 4.950205 TCTTTTGTCCGAGTTCCTAGTT 57.050 40.909 0.00 0.00 0.00 2.24
4624 4691 4.950205 TTCTTTTGTCCGAGTTCCTAGT 57.050 40.909 0.00 0.00 0.00 2.57
4625 4692 9.595823 TTTATATTCTTTTGTCCGAGTTCCTAG 57.404 33.333 0.00 0.00 0.00 3.02
4626 4693 9.595823 CTTTATATTCTTTTGTCCGAGTTCCTA 57.404 33.333 0.00 0.00 0.00 2.94
4627 4694 8.319146 TCTTTATATTCTTTTGTCCGAGTTCCT 58.681 33.333 0.00 0.00 0.00 3.36
4628 4695 8.488651 TCTTTATATTCTTTTGTCCGAGTTCC 57.511 34.615 0.00 0.00 0.00 3.62
4646 4713 9.374838 GTCTCCCGTTTGTCTTATTTCTTTATA 57.625 33.333 0.00 0.00 0.00 0.98
4647 4714 7.064253 CGTCTCCCGTTTGTCTTATTTCTTTAT 59.936 37.037 0.00 0.00 0.00 1.40
4648 4715 6.366877 CGTCTCCCGTTTGTCTTATTTCTTTA 59.633 38.462 0.00 0.00 0.00 1.85
4649 4716 5.178809 CGTCTCCCGTTTGTCTTATTTCTTT 59.821 40.000 0.00 0.00 0.00 2.52
4650 4717 4.689345 CGTCTCCCGTTTGTCTTATTTCTT 59.311 41.667 0.00 0.00 0.00 2.52
4651 4718 4.021719 TCGTCTCCCGTTTGTCTTATTTCT 60.022 41.667 0.00 0.00 37.94 2.52
4652 4719 4.240096 TCGTCTCCCGTTTGTCTTATTTC 58.760 43.478 0.00 0.00 37.94 2.17
4653 4720 4.261578 TCGTCTCCCGTTTGTCTTATTT 57.738 40.909 0.00 0.00 37.94 1.40
4654 4721 3.947910 TCGTCTCCCGTTTGTCTTATT 57.052 42.857 0.00 0.00 37.94 1.40
4655 4722 3.947910 TTCGTCTCCCGTTTGTCTTAT 57.052 42.857 0.00 0.00 37.94 1.73
4656 4723 3.731652 TTTCGTCTCCCGTTTGTCTTA 57.268 42.857 0.00 0.00 37.94 2.10
4657 4724 2.607631 TTTCGTCTCCCGTTTGTCTT 57.392 45.000 0.00 0.00 37.94 3.01
4658 4725 2.607631 TTTTCGTCTCCCGTTTGTCT 57.392 45.000 0.00 0.00 37.94 3.41
4659 4726 2.095919 CCATTTTCGTCTCCCGTTTGTC 60.096 50.000 0.00 0.00 37.94 3.18
4660 4727 1.877443 CCATTTTCGTCTCCCGTTTGT 59.123 47.619 0.00 0.00 37.94 2.83
4661 4728 2.147958 TCCATTTTCGTCTCCCGTTTG 58.852 47.619 0.00 0.00 37.94 2.93
4662 4729 2.551032 GTTCCATTTTCGTCTCCCGTTT 59.449 45.455 0.00 0.00 37.94 3.60
4663 4730 2.148768 GTTCCATTTTCGTCTCCCGTT 58.851 47.619 0.00 0.00 37.94 4.44
4664 4731 1.071071 TGTTCCATTTTCGTCTCCCGT 59.929 47.619 0.00 0.00 37.94 5.28
4665 4732 1.463444 GTGTTCCATTTTCGTCTCCCG 59.537 52.381 0.00 0.00 38.13 5.14
4666 4733 2.779506 AGTGTTCCATTTTCGTCTCCC 58.220 47.619 0.00 0.00 0.00 4.30
4667 4734 6.103997 TGTATAGTGTTCCATTTTCGTCTCC 58.896 40.000 0.00 0.00 0.00 3.71
4668 4735 7.591006 TTGTATAGTGTTCCATTTTCGTCTC 57.409 36.000 0.00 0.00 0.00 3.36
4669 4736 7.972832 TTTGTATAGTGTTCCATTTTCGTCT 57.027 32.000 0.00 0.00 0.00 4.18
4670 4737 9.620660 AATTTTGTATAGTGTTCCATTTTCGTC 57.379 29.630 0.00 0.00 0.00 4.20
4671 4738 9.974980 AAATTTTGTATAGTGTTCCATTTTCGT 57.025 25.926 0.00 0.00 0.00 3.85
4730 4797 8.696374 TCAATGTCCTTGGTGTTAACATAAAAA 58.304 29.630 12.26 3.68 35.43 1.94
4731 4798 8.239038 TCAATGTCCTTGGTGTTAACATAAAA 57.761 30.769 12.26 6.05 35.43 1.52
4732 4799 7.825331 TCAATGTCCTTGGTGTTAACATAAA 57.175 32.000 12.26 8.46 35.43 1.40
4733 4800 7.825331 TTCAATGTCCTTGGTGTTAACATAA 57.175 32.000 12.26 9.47 35.43 1.90
4734 4801 7.825331 TTTCAATGTCCTTGGTGTTAACATA 57.175 32.000 12.26 1.36 35.43 2.29
4735 4802 6.723298 TTTCAATGTCCTTGGTGTTAACAT 57.277 33.333 12.26 0.00 35.43 2.71
4736 4803 6.531503 TTTTCAATGTCCTTGGTGTTAACA 57.468 33.333 3.59 3.59 35.43 2.41
4737 4804 9.535878 TTAATTTTCAATGTCCTTGGTGTTAAC 57.464 29.630 0.00 0.00 35.43 2.01
4740 4807 9.454859 TTTTTAATTTTCAATGTCCTTGGTGTT 57.545 25.926 0.00 0.00 35.43 3.32
4765 4832 2.110721 AGCCTCTCTCACCCCAATTTTT 59.889 45.455 0.00 0.00 0.00 1.94
4766 4833 1.713078 AGCCTCTCTCACCCCAATTTT 59.287 47.619 0.00 0.00 0.00 1.82
4767 4834 1.283321 GAGCCTCTCTCACCCCAATTT 59.717 52.381 0.00 0.00 41.51 1.82
4768 4835 0.915364 GAGCCTCTCTCACCCCAATT 59.085 55.000 0.00 0.00 41.51 2.32
4769 4836 1.333636 CGAGCCTCTCTCACCCCAAT 61.334 60.000 0.00 0.00 41.98 3.16
4770 4837 1.984570 CGAGCCTCTCTCACCCCAA 60.985 63.158 0.00 0.00 41.98 4.12
4771 4838 2.363018 CGAGCCTCTCTCACCCCA 60.363 66.667 0.00 0.00 41.98 4.96


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.