Multiple sequence alignment - TraesCS5D01G058800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G058800 chr5D 100.000 2569 0 0 1 2569 55696515 55693947 0.000000e+00 4745.0
1 TraesCS5D01G058800 chr5D 86.099 446 36 11 1090 1513 55559041 55558600 8.380000e-125 457.0
2 TraesCS5D01G058800 chr5D 95.294 255 7 5 250 501 318050958 318050706 1.430000e-107 399.0
3 TraesCS5D01G058800 chr5D 84.767 407 33 12 1132 1513 55639708 55639306 5.190000e-102 381.0
4 TraesCS5D01G058800 chr5D 85.753 365 44 8 1514 1875 326380503 326380144 1.870000e-101 379.0
5 TraesCS5D01G058800 chr5D 93.676 253 10 5 251 501 484090891 484091139 8.680000e-100 374.0
6 TraesCS5D01G058800 chr5D 88.344 163 14 3 573 732 55584919 55584759 9.380000e-45 191.0
7 TraesCS5D01G058800 chr5D 88.235 68 5 1 506 570 523610203 523610270 7.620000e-11 78.7
8 TraesCS5D01G058800 chr5D 87.324 71 6 1 506 573 542825126 542825056 7.620000e-11 78.7
9 TraesCS5D01G058800 chr5D 82.418 91 10 4 488 574 349641409 349641497 9.860000e-10 75.0
10 TraesCS5D01G058800 chr5B 89.784 1018 72 10 1140 2146 58400385 58399389 0.000000e+00 1275.0
11 TraesCS5D01G058800 chr5B 90.588 425 37 3 2143 2566 629951303 629950881 6.210000e-156 560.0
12 TraesCS5D01G058800 chr5B 91.579 380 26 4 570 945 58403767 58403390 1.050000e-143 520.0
13 TraesCS5D01G058800 chr5B 86.175 434 44 12 1090 1513 58396707 58396280 3.010000e-124 455.0
14 TraesCS5D01G058800 chr5B 85.142 424 37 4 1090 1497 58398770 58398357 6.620000e-111 411.0
15 TraesCS5D01G058800 chr5B 84.469 367 37 12 1524 1873 185229595 185229232 6.810000e-91 344.0
16 TraesCS5D01G058800 chr5A 88.515 653 58 8 1510 2146 44299934 44299283 0.000000e+00 774.0
17 TraesCS5D01G058800 chr5A 84.831 356 27 10 1182 1513 44296840 44296488 1.470000e-87 333.0
18 TraesCS5D01G058800 chr5A 95.652 207 9 0 1093 1299 44300245 44300039 1.470000e-87 333.0
19 TraesCS5D01G058800 chr5A 90.308 227 15 3 847 1066 44300465 44300239 8.990000e-75 291.0
20 TraesCS5D01G058800 chr5A 95.906 171 6 1 578 748 44301187 44301018 2.520000e-70 276.0
21 TraesCS5D01G058800 chr5A 93.333 45 2 1 1964 2008 88897392 88897349 5.930000e-07 65.8
22 TraesCS5D01G058800 chr7D 92.100 519 16 10 1 496 598322782 598323298 0.000000e+00 708.0
23 TraesCS5D01G058800 chr7D 86.486 74 6 2 503 572 598323499 598323572 7.620000e-11 78.7
24 TraesCS5D01G058800 chr2A 88.941 425 45 2 2145 2569 705287558 705287136 8.140000e-145 523.0
25 TraesCS5D01G058800 chr6D 92.141 369 15 9 1 366 410197764 410197407 2.280000e-140 508.0
26 TraesCS5D01G058800 chr6D 89.420 293 18 8 251 535 470254534 470254821 8.740000e-95 357.0
27 TraesCS5D01G058800 chr6D 84.158 202 26 5 1678 1875 303028783 303028584 9.380000e-45 191.0
28 TraesCS5D01G058800 chr1D 86.816 402 27 14 1 392 235875185 235875570 2.360000e-115 425.0
29 TraesCS5D01G058800 chr1D 85.303 347 45 6 1514 1856 234522473 234522129 1.130000e-93 353.0
30 TraesCS5D01G058800 chr1D 78.804 368 55 13 1514 1879 340301493 340301147 2.570000e-55 226.0
31 TraesCS5D01G058800 chr1D 81.967 244 39 4 1557 1797 345425779 345425538 4.330000e-48 202.0
32 TraesCS5D01G058800 chr1D 80.377 265 40 9 1514 1768 479125024 479124762 9.380000e-45 191.0
33 TraesCS5D01G058800 chr1D 79.167 168 31 4 1678 1843 205085420 205085255 2.090000e-21 113.0
34 TraesCS5D01G058800 chr1D 83.529 85 11 2 490 571 1962947 1962863 2.740000e-10 76.8
35 TraesCS5D01G058800 chr6B 86.453 406 31 14 1 391 393105441 393105045 8.500000e-115 424.0
36 TraesCS5D01G058800 chr6B 81.620 321 49 7 1526 1839 212421898 212421581 9.120000e-65 257.0
37 TraesCS5D01G058800 chr6B 87.342 79 5 5 497 570 644170773 644170695 4.550000e-13 86.1
38 TraesCS5D01G058800 chr6B 95.745 47 2 0 1962 2008 467911732 467911778 2.740000e-10 76.8
39 TraesCS5D01G058800 chr7B 86.318 402 32 15 1 392 616500787 616501175 1.420000e-112 416.0
40 TraesCS5D01G058800 chr7B 84.962 399 37 14 1 391 43751010 43750627 1.440000e-102 383.0
41 TraesCS5D01G058800 chr2D 90.030 331 17 10 1 323 186329574 186329896 5.110000e-112 414.0
42 TraesCS5D01G058800 chr2D 83.288 371 53 5 1514 1877 337852343 337851975 1.470000e-87 333.0
43 TraesCS5D01G058800 chr2D 90.385 52 5 0 2158 2209 52693583 52693532 4.590000e-08 69.4
44 TraesCS5D01G058800 chr2B 85.258 407 35 18 1 392 729835840 729835444 1.850000e-106 396.0
45 TraesCS5D01G058800 chrUn 85.750 400 26 15 1 392 76527054 76526678 6.660000e-106 394.0
46 TraesCS5D01G058800 chr7A 84.826 402 39 13 1 392 196679656 196680045 4.010000e-103 385.0
47 TraesCS5D01G058800 chr7A 94.872 39 2 0 1961 1999 284654394 284654432 7.680000e-06 62.1
48 TraesCS5D01G058800 chr7A 96.970 33 0 1 1966 1997 282065592 282065560 1.000000e-03 54.7
49 TraesCS5D01G058800 chr4A 83.747 363 51 7 1514 1873 742464620 742464263 1.140000e-88 337.0
50 TraesCS5D01G058800 chr4A 82.979 94 8 7 480 570 448631835 448631747 7.620000e-11 78.7
51 TraesCS5D01G058800 chr4A 94.872 39 1 1 1961 1999 543833991 543834028 2.760000e-05 60.2
52 TraesCS5D01G058800 chr3B 83.242 364 50 10 1514 1872 17763801 17763444 8.870000e-85 324.0
53 TraesCS5D01G058800 chr1B 83.728 338 51 4 1514 1849 339692161 339692496 1.480000e-82 316.0
54 TraesCS5D01G058800 chr1B 79.392 296 44 10 1514 1797 465268947 465269237 2.610000e-45 193.0
55 TraesCS5D01G058800 chr3D 93.659 205 10 3 296 498 204475241 204475038 1.160000e-78 303.0
56 TraesCS5D01G058800 chr3D 84.444 90 6 6 488 572 530251143 530251229 5.890000e-12 82.4
57 TraesCS5D01G058800 chr4D 81.616 359 58 5 1514 1866 344122880 344122524 8.990000e-75 291.0
58 TraesCS5D01G058800 chr4D 91.667 48 4 0 1961 2008 471495436 471495389 1.650000e-07 67.6
59 TraesCS5D01G058800 chr4B 81.351 370 54 11 1514 1873 532233192 532233556 1.160000e-73 287.0
60 TraesCS5D01G058800 chr4B 85.294 170 25 0 1718 1887 386465389 386465220 2.630000e-40 176.0
61 TraesCS5D01G058800 chr4B 78.138 247 40 10 1539 1782 583588527 583588762 7.410000e-31 145.0
62 TraesCS5D01G058800 chr6A 80.453 353 59 5 1514 1856 524297723 524297371 7.050000e-66 261.0
63 TraesCS5D01G058800 chr1A 82.745 255 40 2 1533 1783 18149091 18149345 9.250000e-55 224.0
64 TraesCS5D01G058800 chr1A 78.173 197 39 3 1678 1873 461243770 461243577 3.470000e-24 122.0
65 TraesCS5D01G058800 chr1A 83.465 127 17 4 1678 1802 499407010 499406886 5.810000e-22 115.0
66 TraesCS5D01G058800 chr1A 85.366 82 6 6 503 580 370470713 370470792 2.120000e-11 80.5
67 TraesCS5D01G058800 chr3A 97.222 36 0 1 1963 1998 242513262 242513228 2.760000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G058800 chr5D 55693947 55696515 2568 True 4745.00 4745 100.0000 1 2569 1 chr5D.!!$R4 2568
1 TraesCS5D01G058800 chr5B 58396280 58403767 7487 True 665.25 1275 88.1700 570 2146 4 chr5B.!!$R3 1576
2 TraesCS5D01G058800 chr5A 44296488 44301187 4699 True 401.40 774 91.0424 578 2146 5 chr5A.!!$R2 1568
3 TraesCS5D01G058800 chr7D 598322782 598323572 790 False 393.35 708 89.2930 1 572 2 chr7D.!!$F1 571

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
955 2281 0.041312 CGCAGCCGAAAAATATCCGG 60.041 55.0 0.0 0.0 45.51 5.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2363 5966 0.026803 GTCGCTGCCTATTTCGCTTG 59.973 55.0 0.0 0.0 0.0 4.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
123 124 5.425217 ACAACTAGACCACATATCACATGGA 59.575 40.000 0.00 0.00 36.94 3.41
198 199 1.770294 AAACTGAAAAGGCGGTCCAA 58.230 45.000 0.00 0.00 33.74 3.53
243 247 1.062002 CAAGTTACTAATGGCGCACCG 59.938 52.381 10.83 0.00 39.70 4.94
247 251 1.890625 TACTAATGGCGCACCGTGGT 61.891 55.000 10.83 1.54 39.70 4.16
406 430 2.347114 CACCGTGGGAGTGATGCA 59.653 61.111 0.00 0.00 37.42 3.96
416 440 3.118408 TGGGAGTGATGCACCATTAGTAC 60.118 47.826 0.00 0.00 34.49 2.73
436 460 3.873910 ACTTGAACTAGTAATGGCGCAT 58.126 40.909 10.83 0.00 0.00 4.73
530 606 2.998480 TACCATCCCACGGTGCGT 60.998 61.111 1.68 0.00 42.36 5.24
576 798 5.992217 CCCTTTTCCTAGTAGTGTCATATGC 59.008 44.000 0.00 0.00 0.00 3.14
641 866 4.520874 TCGCTTCTCTTATATGGACTGGAG 59.479 45.833 0.00 0.00 0.00 3.86
834 1545 4.577687 AGCAATGACATTAACGTGTACG 57.422 40.909 0.00 2.43 46.33 3.67
838 1549 3.982127 TGACATTAACGTGTACGCATG 57.018 42.857 7.29 5.18 44.43 4.06
840 1551 2.343101 ACATTAACGTGTACGCATGCT 58.657 42.857 17.13 5.50 44.43 3.79
851 1562 5.107645 CGTGTACGCATGCTATATTGCTTTA 60.108 40.000 17.13 0.00 36.71 1.85
866 1577 5.386958 TTGCTTTATATATCTCGGCGTCT 57.613 39.130 6.85 0.00 0.00 4.18
868 1579 6.694877 TGCTTTATATATCTCGGCGTCTAT 57.305 37.500 6.85 5.41 0.00 1.98
913 1625 1.499056 CTTCACTCACATGTGCCGC 59.501 57.895 21.38 0.00 37.81 6.53
949 2275 0.171007 CATGACCGCAGCCGAAAAAT 59.829 50.000 0.00 0.00 36.29 1.82
953 2279 1.002792 GACCGCAGCCGAAAAATATCC 60.003 52.381 0.00 0.00 36.29 2.59
955 2281 0.041312 CGCAGCCGAAAAATATCCGG 60.041 55.000 0.00 0.00 45.51 5.14
994 2320 0.467844 AACTTGCCATGTCCAGCACA 60.468 50.000 0.00 0.00 39.10 4.57
1066 2958 3.129502 CTGCATGTCCGCCACAGG 61.130 66.667 0.00 0.00 38.85 4.00
1067 2959 3.610619 CTGCATGTCCGCCACAGGA 62.611 63.158 1.98 0.00 39.27 3.86
1068 2960 2.124570 GCATGTCCGCCACAGGAT 60.125 61.111 1.98 0.00 43.04 3.24
1069 2961 1.146041 GCATGTCCGCCACAGGATA 59.854 57.895 1.98 0.00 43.04 2.59
1070 2962 0.250467 GCATGTCCGCCACAGGATAT 60.250 55.000 1.98 0.00 41.89 1.63
1071 2963 1.815408 GCATGTCCGCCACAGGATATT 60.815 52.381 1.98 0.00 39.64 1.28
1072 2964 1.875514 CATGTCCGCCACAGGATATTG 59.124 52.381 0.00 0.00 39.64 1.90
1073 2965 0.180171 TGTCCGCCACAGGATATTGG 59.820 55.000 0.00 0.00 43.04 3.16
1074 2966 0.468226 GTCCGCCACAGGATATTGGA 59.532 55.000 0.00 0.00 43.04 3.53
1075 2967 0.468226 TCCGCCACAGGATATTGGAC 59.532 55.000 0.00 0.00 34.92 4.02
1076 2968 0.469917 CCGCCACAGGATATTGGACT 59.530 55.000 0.00 0.00 34.46 3.85
1077 2969 1.586422 CGCCACAGGATATTGGACTG 58.414 55.000 0.00 0.00 34.46 3.51
1078 2970 1.811558 CGCCACAGGATATTGGACTGG 60.812 57.143 0.00 0.00 36.57 4.00
1079 2971 1.490490 GCCACAGGATATTGGACTGGA 59.510 52.381 0.00 0.00 36.57 3.86
1080 2972 2.107204 GCCACAGGATATTGGACTGGAT 59.893 50.000 0.00 0.00 36.57 3.41
1081 2973 3.327757 GCCACAGGATATTGGACTGGATA 59.672 47.826 0.00 0.00 36.57 2.59
1082 2974 4.018960 GCCACAGGATATTGGACTGGATAT 60.019 45.833 0.00 0.00 36.57 1.63
1083 2975 5.515534 GCCACAGGATATTGGACTGGATATT 60.516 44.000 0.00 0.00 36.57 1.28
1084 2976 6.546484 CCACAGGATATTGGACTGGATATTT 58.454 40.000 0.00 0.00 36.57 1.40
1085 2977 7.006509 CCACAGGATATTGGACTGGATATTTT 58.993 38.462 0.00 0.00 36.57 1.82
1086 2978 7.175641 CCACAGGATATTGGACTGGATATTTTC 59.824 40.741 0.00 0.00 36.57 2.29
1087 2979 7.175641 CACAGGATATTGGACTGGATATTTTCC 59.824 40.741 0.00 0.00 45.69 3.13
1088 2980 6.660949 CAGGATATTGGACTGGATATTTTCCC 59.339 42.308 0.00 0.00 44.77 3.97
1089 2981 6.335311 AGGATATTGGACTGGATATTTTCCCA 59.665 38.462 0.00 0.00 44.77 4.37
1090 2982 6.434340 GGATATTGGACTGGATATTTTCCCAC 59.566 42.308 0.00 0.00 44.77 4.61
1091 2983 3.662759 TGGACTGGATATTTTCCCACC 57.337 47.619 0.00 0.00 44.77 4.61
1092 2984 2.092646 TGGACTGGATATTTTCCCACCG 60.093 50.000 0.00 0.00 44.77 4.94
1093 2985 1.947456 GACTGGATATTTTCCCACCGC 59.053 52.381 0.00 0.00 44.77 5.68
1094 2986 1.318576 CTGGATATTTTCCCACCGCC 58.681 55.000 0.00 0.00 44.77 6.13
1095 2987 0.626382 TGGATATTTTCCCACCGCCA 59.374 50.000 0.00 0.00 44.77 5.69
1096 2988 1.029681 GGATATTTTCCCACCGCCAC 58.970 55.000 0.00 0.00 38.75 5.01
1097 2989 1.683629 GGATATTTTCCCACCGCCACA 60.684 52.381 0.00 0.00 38.75 4.17
1098 2990 1.676006 GATATTTTCCCACCGCCACAG 59.324 52.381 0.00 0.00 0.00 3.66
1105 2997 1.811266 CCACCGCCACAGATCTTCG 60.811 63.158 0.00 0.00 0.00 3.79
1110 3002 0.869454 CGCCACAGATCTTCGCTCTC 60.869 60.000 0.00 0.00 0.00 3.20
1121 3013 4.598894 CGCTCTCCCATGCCTCCG 62.599 72.222 0.00 0.00 0.00 4.63
1291 4846 0.674895 CCAAGACTGGGGCTTCTTCG 60.675 60.000 0.00 0.00 39.30 3.79
1301 4877 1.135721 GGGCTTCTTCGTGGTACGTAT 59.864 52.381 0.00 0.00 43.14 3.06
1311 4887 2.609984 CGTGGTACGTATGACCCAAACA 60.610 50.000 0.00 0.00 36.74 2.83
1448 5026 2.509336 CTGTTCAGCCTACCGCCG 60.509 66.667 0.00 0.00 38.78 6.46
1457 5035 2.105128 CTACCGCCGGAGCAGAAG 59.895 66.667 11.71 0.00 39.83 2.85
1474 5052 2.046892 GCAGGAGCACATGGACGT 60.047 61.111 0.00 0.00 41.58 4.34
1477 5055 2.509336 GGAGCACATGGACGTCGG 60.509 66.667 9.92 4.19 0.00 4.79
1480 5058 4.760047 GCACATGGACGTCGGCCT 62.760 66.667 20.13 0.26 0.00 5.19
1481 5059 2.815211 CACATGGACGTCGGCCTG 60.815 66.667 20.13 16.02 0.00 4.85
1549 5132 2.353406 CCGTACCTTCACTTCATCGGTT 60.353 50.000 0.00 0.00 33.39 4.44
1554 5137 6.091713 CGTACCTTCACTTCATCGGTTTTATT 59.908 38.462 0.00 0.00 0.00 1.40
1570 5153 2.346766 TATTGCCGGTGCTCATGAAT 57.653 45.000 1.90 0.00 38.71 2.57
1574 5157 0.529773 GCCGGTGCTCATGAATACGA 60.530 55.000 1.90 0.00 33.53 3.43
1577 5160 3.649073 CCGGTGCTCATGAATACGATAA 58.351 45.455 0.00 0.00 0.00 1.75
1587 5170 7.119709 TCATGAATACGATAAAAGGAGGACA 57.880 36.000 0.00 0.00 0.00 4.02
1674 5264 7.334921 TGGGTTCTAAATGTAGTTAAATCCGTG 59.665 37.037 0.00 0.00 0.00 4.94
1741 5332 5.651387 TTGCATGAATTTCATCCGGTTTA 57.349 34.783 8.95 0.00 34.28 2.01
1784 5375 1.941812 CGATTAGCGTTGGATGGCC 59.058 57.895 0.00 0.00 34.64 5.36
1802 5393 2.124151 GCCTCCCGCATCCATGTT 60.124 61.111 0.00 0.00 37.47 2.71
1991 5582 4.358494 TTTCGAAACGAAGGCAAAAGAA 57.642 36.364 6.47 0.00 46.43 2.52
2009 5600 7.959109 GCAAAAGAATTGCCTCATTCATTAAAC 59.041 33.333 1.80 0.00 39.38 2.01
2018 5609 5.067023 GCCTCATTCATTAAACAAGGGAGAG 59.933 44.000 0.00 0.00 0.00 3.20
2091 5691 7.678690 GCCAATTACTCGCACAATACAATAAGT 60.679 37.037 0.00 0.00 0.00 2.24
2093 5693 8.387354 CAATTACTCGCACAATACAATAAGTCA 58.613 33.333 0.00 0.00 0.00 3.41
2146 5749 2.704725 AGCGTCAACGATTGCATTTT 57.295 40.000 6.75 0.00 43.02 1.82
2147 5750 3.011949 AGCGTCAACGATTGCATTTTT 57.988 38.095 6.75 0.00 43.02 1.94
2169 5772 2.163818 TTGAACTCTAACGGCAGGTG 57.836 50.000 0.00 0.00 0.00 4.00
2170 5773 0.320421 TGAACTCTAACGGCAGGTGC 60.320 55.000 0.00 0.00 41.14 5.01
2171 5774 0.037232 GAACTCTAACGGCAGGTGCT 60.037 55.000 1.26 0.00 41.70 4.40
2172 5775 0.037232 AACTCTAACGGCAGGTGCTC 60.037 55.000 1.26 0.00 41.70 4.26
2173 5776 0.900647 ACTCTAACGGCAGGTGCTCT 60.901 55.000 1.26 0.00 41.70 4.09
2174 5777 1.103803 CTCTAACGGCAGGTGCTCTA 58.896 55.000 1.26 0.00 41.70 2.43
2175 5778 0.815734 TCTAACGGCAGGTGCTCTAC 59.184 55.000 1.26 0.00 41.70 2.59
2192 5795 9.998106 GGTGCTCTACCTTTTCATTATAGATAA 57.002 33.333 0.00 0.00 46.51 1.75
2214 5817 9.998106 GATAAGGAATATACAGGAAAGTTAGCA 57.002 33.333 0.00 0.00 0.00 3.49
2216 5819 7.439108 AGGAATATACAGGAAAGTTAGCAGT 57.561 36.000 0.00 0.00 0.00 4.40
2217 5820 7.501844 AGGAATATACAGGAAAGTTAGCAGTC 58.498 38.462 0.00 0.00 0.00 3.51
2218 5821 6.421202 GGAATATACAGGAAAGTTAGCAGTCG 59.579 42.308 0.00 0.00 0.00 4.18
2219 5822 4.803098 ATACAGGAAAGTTAGCAGTCGT 57.197 40.909 0.00 0.00 0.00 4.34
2220 5823 3.027974 ACAGGAAAGTTAGCAGTCGTC 57.972 47.619 0.00 0.00 0.00 4.20
2221 5824 2.364324 ACAGGAAAGTTAGCAGTCGTCA 59.636 45.455 0.00 0.00 0.00 4.35
2222 5825 2.989840 CAGGAAAGTTAGCAGTCGTCAG 59.010 50.000 0.00 0.00 0.00 3.51
2223 5826 2.891580 AGGAAAGTTAGCAGTCGTCAGA 59.108 45.455 0.00 0.00 0.00 3.27
2224 5827 3.321111 AGGAAAGTTAGCAGTCGTCAGAA 59.679 43.478 0.00 0.00 0.00 3.02
2225 5828 3.675698 GGAAAGTTAGCAGTCGTCAGAAG 59.324 47.826 0.00 0.00 0.00 2.85
2226 5829 3.305398 AAGTTAGCAGTCGTCAGAAGG 57.695 47.619 0.00 0.00 0.00 3.46
2227 5830 1.067495 AGTTAGCAGTCGTCAGAAGGC 60.067 52.381 0.00 0.00 0.00 4.35
2228 5831 0.109272 TTAGCAGTCGTCAGAAGGCG 60.109 55.000 0.00 0.00 34.21 5.52
2229 5832 1.241990 TAGCAGTCGTCAGAAGGCGT 61.242 55.000 0.00 0.00 34.21 5.68
2230 5833 1.664965 GCAGTCGTCAGAAGGCGTT 60.665 57.895 0.00 0.00 0.00 4.84
2231 5834 1.891060 GCAGTCGTCAGAAGGCGTTG 61.891 60.000 0.00 0.00 0.00 4.10
2232 5835 1.664965 AGTCGTCAGAAGGCGTTGC 60.665 57.895 0.00 0.00 0.00 4.17
2243 5846 3.949031 GGCGTTGCCTGTACAAAAA 57.051 47.368 0.00 0.00 46.69 1.94
2244 5847 1.766069 GGCGTTGCCTGTACAAAAAG 58.234 50.000 0.00 0.00 46.69 2.27
2245 5848 1.601914 GGCGTTGCCTGTACAAAAAGG 60.602 52.381 0.00 0.00 46.69 3.11
2246 5849 1.601914 GCGTTGCCTGTACAAAAAGGG 60.602 52.381 0.00 0.00 33.87 3.95
2247 5850 1.000717 CGTTGCCTGTACAAAAAGGGG 60.001 52.381 0.00 0.00 33.87 4.79
2248 5851 2.312390 GTTGCCTGTACAAAAAGGGGA 58.688 47.619 0.00 0.00 33.87 4.81
2249 5852 2.696187 GTTGCCTGTACAAAAAGGGGAA 59.304 45.455 0.00 0.00 33.87 3.97
2250 5853 3.033659 TGCCTGTACAAAAAGGGGAAA 57.966 42.857 0.00 0.00 33.87 3.13
2251 5854 2.696187 TGCCTGTACAAAAAGGGGAAAC 59.304 45.455 0.00 0.00 33.87 2.78
2252 5855 2.963101 GCCTGTACAAAAAGGGGAAACT 59.037 45.455 0.00 0.00 33.87 2.66
2253 5856 4.146564 GCCTGTACAAAAAGGGGAAACTA 58.853 43.478 0.00 0.00 33.87 2.24
2254 5857 4.585581 GCCTGTACAAAAAGGGGAAACTAA 59.414 41.667 0.00 0.00 33.87 2.24
2255 5858 5.069383 GCCTGTACAAAAAGGGGAAACTAAA 59.931 40.000 0.00 0.00 33.87 1.85
2256 5859 6.407187 GCCTGTACAAAAAGGGGAAACTAAAA 60.407 38.462 0.00 0.00 33.87 1.52
2257 5860 6.982141 CCTGTACAAAAAGGGGAAACTAAAAC 59.018 38.462 0.00 0.00 0.00 2.43
2258 5861 7.363968 CCTGTACAAAAAGGGGAAACTAAAACA 60.364 37.037 0.00 0.00 0.00 2.83
2259 5862 7.321908 TGTACAAAAAGGGGAAACTAAAACAC 58.678 34.615 0.00 0.00 0.00 3.32
2260 5863 6.614694 ACAAAAAGGGGAAACTAAAACACT 57.385 33.333 0.00 0.00 0.00 3.55
2261 5864 7.721409 ACAAAAAGGGGAAACTAAAACACTA 57.279 32.000 0.00 0.00 0.00 2.74
2262 5865 7.549839 ACAAAAAGGGGAAACTAAAACACTAC 58.450 34.615 0.00 0.00 0.00 2.73
2263 5866 7.398047 ACAAAAAGGGGAAACTAAAACACTACT 59.602 33.333 0.00 0.00 0.00 2.57
2264 5867 7.578310 AAAAGGGGAAACTAAAACACTACTC 57.422 36.000 0.00 0.00 0.00 2.59
2265 5868 6.511017 AAGGGGAAACTAAAACACTACTCT 57.489 37.500 0.00 0.00 0.00 3.24
2266 5869 6.111669 AGGGGAAACTAAAACACTACTCTC 57.888 41.667 0.00 0.00 0.00 3.20
2267 5870 5.605488 AGGGGAAACTAAAACACTACTCTCA 59.395 40.000 0.00 0.00 0.00 3.27
2268 5871 6.100714 AGGGGAAACTAAAACACTACTCTCAA 59.899 38.462 0.00 0.00 0.00 3.02
2269 5872 6.940867 GGGGAAACTAAAACACTACTCTCAAT 59.059 38.462 0.00 0.00 0.00 2.57
2270 5873 8.098912 GGGGAAACTAAAACACTACTCTCAATA 58.901 37.037 0.00 0.00 0.00 1.90
2271 5874 9.498176 GGGAAACTAAAACACTACTCTCAATAA 57.502 33.333 0.00 0.00 0.00 1.40
2283 5886 9.243637 CACTACTCTCAATAAATCTAAGTCAGC 57.756 37.037 0.00 0.00 0.00 4.26
2284 5887 9.196139 ACTACTCTCAATAAATCTAAGTCAGCT 57.804 33.333 0.00 0.00 0.00 4.24
2287 5890 9.160496 ACTCTCAATAAATCTAAGTCAGCTTTG 57.840 33.333 0.00 0.00 36.22 2.77
2288 5891 9.376075 CTCTCAATAAATCTAAGTCAGCTTTGA 57.624 33.333 0.00 0.00 39.86 2.69
2289 5892 9.896645 TCTCAATAAATCTAAGTCAGCTTTGAT 57.103 29.630 0.00 0.00 44.74 2.57
2291 5894 9.671279 TCAATAAATCTAAGTCAGCTTTGATCA 57.329 29.630 0.00 0.00 43.04 2.92
2292 5895 9.932699 CAATAAATCTAAGTCAGCTTTGATCAG 57.067 33.333 0.00 0.00 43.04 2.90
2293 5896 6.434018 AAATCTAAGTCAGCTTTGATCAGC 57.566 37.500 0.00 0.00 43.04 4.26
2294 5897 3.515630 TCTAAGTCAGCTTTGATCAGCG 58.484 45.455 0.00 0.00 45.24 5.18
2295 5898 2.462456 AAGTCAGCTTTGATCAGCGA 57.538 45.000 0.00 0.00 45.24 4.93
2296 5899 2.007360 AGTCAGCTTTGATCAGCGAG 57.993 50.000 0.00 0.00 45.24 5.03
2297 5900 1.547820 AGTCAGCTTTGATCAGCGAGA 59.452 47.619 0.00 0.00 45.24 4.04
2298 5901 1.925847 GTCAGCTTTGATCAGCGAGAG 59.074 52.381 0.00 0.00 45.24 3.20
2299 5902 1.134877 TCAGCTTTGATCAGCGAGAGG 60.135 52.381 0.00 0.00 45.24 3.69
2300 5903 1.134877 CAGCTTTGATCAGCGAGAGGA 60.135 52.381 0.00 0.00 45.24 3.71
2301 5904 1.134848 AGCTTTGATCAGCGAGAGGAC 60.135 52.381 0.00 0.00 45.24 3.85
2302 5905 1.404717 GCTTTGATCAGCGAGAGGACA 60.405 52.381 0.00 0.00 0.00 4.02
2303 5906 2.266554 CTTTGATCAGCGAGAGGACAC 58.733 52.381 0.00 0.00 0.00 3.67
2304 5907 0.532573 TTGATCAGCGAGAGGACACC 59.467 55.000 0.00 0.00 0.00 4.16
2305 5908 0.611896 TGATCAGCGAGAGGACACCA 60.612 55.000 0.00 0.00 0.00 4.17
2306 5909 0.749649 GATCAGCGAGAGGACACCAT 59.250 55.000 0.00 0.00 0.00 3.55
2307 5910 0.749649 ATCAGCGAGAGGACACCATC 59.250 55.000 0.00 0.00 0.00 3.51
2315 5918 2.187946 GGACACCATCCGCTGAGG 59.812 66.667 0.00 0.00 37.88 3.86
2316 5919 2.660064 GGACACCATCCGCTGAGGT 61.660 63.158 0.00 0.00 37.88 3.85
2317 5920 1.296715 GACACCATCCGCTGAGGTT 59.703 57.895 0.00 0.00 41.99 3.50
2318 5921 1.003355 ACACCATCCGCTGAGGTTG 60.003 57.895 0.00 0.00 41.99 3.77
2319 5922 1.296392 CACCATCCGCTGAGGTTGA 59.704 57.895 9.70 0.00 41.23 3.18
2320 5923 0.107508 CACCATCCGCTGAGGTTGAT 60.108 55.000 9.70 0.00 41.23 2.57
2321 5924 0.107508 ACCATCCGCTGAGGTTGATG 60.108 55.000 9.70 1.04 41.23 3.07
2323 5926 1.012086 CATCCGCTGAGGTTGATGTG 58.988 55.000 2.71 0.00 41.23 3.21
2325 5928 0.396435 TCCGCTGAGGTTGATGTGTT 59.604 50.000 0.00 0.00 41.99 3.32
2327 5930 1.229428 CGCTGAGGTTGATGTGTTGT 58.771 50.000 0.00 0.00 0.00 3.32
2328 5931 1.603802 CGCTGAGGTTGATGTGTTGTT 59.396 47.619 0.00 0.00 0.00 2.83
2335 5938 3.632145 AGGTTGATGTGTTGTTGAAGACC 59.368 43.478 0.00 0.00 0.00 3.85
2337 5940 3.576078 TGATGTGTTGTTGAAGACCCT 57.424 42.857 0.00 0.00 0.00 4.34
2338 5941 3.897239 TGATGTGTTGTTGAAGACCCTT 58.103 40.909 0.00 0.00 0.00 3.95
2340 5943 5.630121 TGATGTGTTGTTGAAGACCCTTAT 58.370 37.500 0.00 0.00 0.00 1.73
2343 5946 5.197451 TGTGTTGTTGAAGACCCTTATGTT 58.803 37.500 0.00 0.00 0.00 2.71
2344 5947 5.298276 TGTGTTGTTGAAGACCCTTATGTTC 59.702 40.000 0.00 0.00 0.00 3.18
2350 5953 4.425772 TGAAGACCCTTATGTTCCTCTCA 58.574 43.478 0.00 0.00 0.00 3.27
2356 5959 4.540099 ACCCTTATGTTCCTCTCATTCCAA 59.460 41.667 0.00 0.00 0.00 3.53
2359 5962 7.091993 ACCCTTATGTTCCTCTCATTCCAAATA 60.092 37.037 0.00 0.00 0.00 1.40
2360 5963 7.946776 CCCTTATGTTCCTCTCATTCCAAATAT 59.053 37.037 0.00 0.00 0.00 1.28
2361 5964 8.790718 CCTTATGTTCCTCTCATTCCAAATATG 58.209 37.037 0.00 0.00 0.00 1.78
2362 5965 6.645790 ATGTTCCTCTCATTCCAAATATGC 57.354 37.500 0.00 0.00 0.00 3.14
2363 5966 4.889409 TGTTCCTCTCATTCCAAATATGCC 59.111 41.667 0.00 0.00 0.00 4.40
2364 5967 4.794311 TCCTCTCATTCCAAATATGCCA 57.206 40.909 0.00 0.00 0.00 4.92
2365 5968 5.128033 TCCTCTCATTCCAAATATGCCAA 57.872 39.130 0.00 0.00 0.00 4.52
2366 5969 5.135383 TCCTCTCATTCCAAATATGCCAAG 58.865 41.667 0.00 0.00 0.00 3.61
2367 5970 4.261909 CCTCTCATTCCAAATATGCCAAGC 60.262 45.833 0.00 0.00 0.00 4.01
2368 5971 3.316029 TCTCATTCCAAATATGCCAAGCG 59.684 43.478 0.00 0.00 0.00 4.68
2369 5972 3.286353 TCATTCCAAATATGCCAAGCGA 58.714 40.909 0.00 0.00 0.00 4.93
2370 5973 3.698539 TCATTCCAAATATGCCAAGCGAA 59.301 39.130 0.00 0.00 0.00 4.70
2371 5974 4.159321 TCATTCCAAATATGCCAAGCGAAA 59.841 37.500 0.00 0.00 0.00 3.46
2373 5976 5.843673 TTCCAAATATGCCAAGCGAAATA 57.156 34.783 0.00 0.00 0.00 1.40
2374 5977 5.437289 TCCAAATATGCCAAGCGAAATAG 57.563 39.130 0.00 0.00 0.00 1.73
2375 5978 4.278170 TCCAAATATGCCAAGCGAAATAGG 59.722 41.667 0.00 0.00 0.00 2.57
2379 5982 1.064783 GCCAAGCGAAATAGGCAGC 59.935 57.895 0.00 0.00 46.26 5.25
2380 5983 1.353103 CCAAGCGAAATAGGCAGCG 59.647 57.895 0.00 0.00 34.34 5.18
2382 5985 0.026803 CAAGCGAAATAGGCAGCGAC 59.973 55.000 0.00 0.00 34.34 5.19
2383 5986 1.090052 AAGCGAAATAGGCAGCGACC 61.090 55.000 0.00 0.00 34.34 4.79
2401 6004 2.751436 GCGGCATGCTCCTTGGAA 60.751 61.111 18.92 0.00 41.73 3.53
2403 6006 1.377725 CGGCATGCTCCTTGGAACT 60.378 57.895 18.92 0.00 0.00 3.01
2404 6007 1.372087 CGGCATGCTCCTTGGAACTC 61.372 60.000 18.92 0.00 0.00 3.01
2405 6008 0.034670 GGCATGCTCCTTGGAACTCT 60.035 55.000 18.92 0.00 0.00 3.24
2406 6009 1.093159 GCATGCTCCTTGGAACTCTG 58.907 55.000 11.37 0.00 0.00 3.35
2407 6010 1.612726 GCATGCTCCTTGGAACTCTGT 60.613 52.381 11.37 0.00 0.00 3.41
2408 6011 2.082231 CATGCTCCTTGGAACTCTGTG 58.918 52.381 0.00 0.00 0.00 3.66
2409 6012 1.423584 TGCTCCTTGGAACTCTGTGA 58.576 50.000 0.00 0.00 0.00 3.58
2412 6015 1.345741 CTCCTTGGAACTCTGTGAGCA 59.654 52.381 0.00 0.00 32.04 4.26
2413 6016 1.345741 TCCTTGGAACTCTGTGAGCAG 59.654 52.381 0.00 0.00 43.87 4.24
2414 6017 1.610102 CCTTGGAACTCTGTGAGCAGG 60.610 57.143 0.00 0.00 42.78 4.85
2415 6018 1.071385 CTTGGAACTCTGTGAGCAGGT 59.929 52.381 0.00 0.00 42.78 4.00
2417 6020 0.036858 GGAACTCTGTGAGCAGGTCC 60.037 60.000 0.00 0.00 42.78 4.46
2418 6021 0.972883 GAACTCTGTGAGCAGGTCCT 59.027 55.000 0.00 0.00 42.78 3.85
2419 6022 0.972883 AACTCTGTGAGCAGGTCCTC 59.027 55.000 0.00 0.00 42.78 3.71
2433 8250 0.179000 GTCCTCCACCATTGAGCGAT 59.821 55.000 0.00 0.00 0.00 4.58
2434 8251 0.465705 TCCTCCACCATTGAGCGATC 59.534 55.000 0.00 0.00 0.00 3.69
2435 8252 0.877649 CCTCCACCATTGAGCGATCG 60.878 60.000 11.69 11.69 0.00 3.69
2439 8256 1.358877 CACCATTGAGCGATCGACAA 58.641 50.000 21.57 22.38 0.00 3.18
2441 8258 2.159430 CACCATTGAGCGATCGACAAAA 59.841 45.455 21.57 7.35 0.00 2.44
2442 8259 2.416547 ACCATTGAGCGATCGACAAAAG 59.583 45.455 21.57 18.75 0.00 2.27
2445 8262 2.163818 TGAGCGATCGACAAAAGGTT 57.836 45.000 21.57 0.00 0.00 3.50
2447 8264 1.128692 GAGCGATCGACAAAAGGTTGG 59.871 52.381 21.57 0.00 39.22 3.77
2449 8266 0.871722 CGATCGACAAAAGGTTGGCA 59.128 50.000 10.26 0.00 43.70 4.92
2454 8271 0.032540 GACAAAAGGTTGGCAGGCAG 59.967 55.000 0.00 0.00 42.94 4.85
2456 8273 0.752054 CAAAAGGTTGGCAGGCAGAA 59.248 50.000 0.00 0.00 0.00 3.02
2459 8276 2.134789 AAGGTTGGCAGGCAGAATAG 57.865 50.000 0.00 0.00 0.00 1.73
2461 8278 0.753111 GGTTGGCAGGCAGAATAGGG 60.753 60.000 0.00 0.00 0.00 3.53
2469 10548 2.182842 GCAGAATAGGGCAGCACCG 61.183 63.158 0.00 0.00 40.62 4.94
2470 10549 1.221840 CAGAATAGGGCAGCACCGT 59.778 57.895 0.00 0.00 40.62 4.83
2486 10565 2.970324 GTGGCCGCACGAGACAAA 60.970 61.111 12.58 0.00 0.00 2.83
2487 10566 2.664851 TGGCCGCACGAGACAAAG 60.665 61.111 0.00 0.00 0.00 2.77
2490 10569 2.607892 GCCGCACGAGACAAAGCTT 61.608 57.895 0.00 0.00 0.00 3.74
2493 10572 1.221466 CGCACGAGACAAAGCTTGGA 61.221 55.000 8.15 0.00 34.12 3.53
2495 10574 0.868406 CACGAGACAAAGCTTGGACC 59.132 55.000 8.15 0.00 34.12 4.46
2496 10575 0.468226 ACGAGACAAAGCTTGGACCA 59.532 50.000 8.15 0.00 34.12 4.02
2497 10576 1.151668 CGAGACAAAGCTTGGACCAG 58.848 55.000 8.15 0.00 34.12 4.00
2498 10577 1.270305 CGAGACAAAGCTTGGACCAGA 60.270 52.381 8.15 0.00 34.12 3.86
2499 10578 2.147150 GAGACAAAGCTTGGACCAGAC 58.853 52.381 8.15 0.00 34.12 3.51
2500 10579 1.490490 AGACAAAGCTTGGACCAGACA 59.510 47.619 8.15 0.00 34.12 3.41
2501 10580 2.107204 AGACAAAGCTTGGACCAGACAT 59.893 45.455 8.15 0.00 34.12 3.06
2502 10581 2.485814 GACAAAGCTTGGACCAGACATC 59.514 50.000 8.15 0.00 34.12 3.06
2503 10582 1.815003 CAAAGCTTGGACCAGACATCC 59.185 52.381 0.00 0.00 36.70 3.51
2504 10583 1.366319 AAGCTTGGACCAGACATCCT 58.634 50.000 0.00 0.00 37.13 3.24
2506 10585 1.004044 AGCTTGGACCAGACATCCTTG 59.996 52.381 0.00 0.00 37.13 3.61
2507 10586 1.952367 GCTTGGACCAGACATCCTTGG 60.952 57.143 0.00 0.00 37.13 3.61
2508 10587 1.630369 CTTGGACCAGACATCCTTGGA 59.370 52.381 0.00 0.00 37.13 3.53
2509 10588 1.279496 TGGACCAGACATCCTTGGAG 58.721 55.000 0.00 0.00 37.13 3.86
2510 10589 1.203300 TGGACCAGACATCCTTGGAGA 60.203 52.381 0.00 0.00 37.13 3.71
2511 10590 1.909302 GGACCAGACATCCTTGGAGAA 59.091 52.381 0.00 0.00 33.03 2.87
2512 10591 2.093235 GGACCAGACATCCTTGGAGAAG 60.093 54.545 0.00 0.00 33.03 2.85
2513 10592 2.834549 GACCAGACATCCTTGGAGAAGA 59.165 50.000 0.00 0.00 0.00 2.87
2514 10593 2.569404 ACCAGACATCCTTGGAGAAGAC 59.431 50.000 0.00 0.00 0.00 3.01
2515 10594 2.417924 CCAGACATCCTTGGAGAAGACG 60.418 54.545 0.00 0.00 0.00 4.18
2516 10595 1.205893 AGACATCCTTGGAGAAGACGC 59.794 52.381 0.00 0.00 0.00 5.19
2518 10597 1.347707 ACATCCTTGGAGAAGACGCAA 59.652 47.619 0.00 0.00 0.00 4.85
2533 10612 0.588252 CGCAAGTGTTGAAGAGGTGG 59.412 55.000 0.00 0.00 0.00 4.61
2535 10614 1.876156 GCAAGTGTTGAAGAGGTGGAG 59.124 52.381 0.00 0.00 0.00 3.86
2536 10615 2.746472 GCAAGTGTTGAAGAGGTGGAGT 60.746 50.000 0.00 0.00 0.00 3.85
2537 10616 2.874701 CAAGTGTTGAAGAGGTGGAGTG 59.125 50.000 0.00 0.00 0.00 3.51
2538 10617 2.398588 AGTGTTGAAGAGGTGGAGTGA 58.601 47.619 0.00 0.00 0.00 3.41
2540 10619 3.070018 GTGTTGAAGAGGTGGAGTGATG 58.930 50.000 0.00 0.00 0.00 3.07
2541 10620 2.705658 TGTTGAAGAGGTGGAGTGATGT 59.294 45.455 0.00 0.00 0.00 3.06
2542 10621 3.136443 TGTTGAAGAGGTGGAGTGATGTT 59.864 43.478 0.00 0.00 0.00 2.71
2544 10623 4.008074 TGAAGAGGTGGAGTGATGTTTC 57.992 45.455 0.00 0.00 0.00 2.78
2545 10624 3.390967 TGAAGAGGTGGAGTGATGTTTCA 59.609 43.478 0.00 0.00 0.00 2.69
2546 10625 3.692257 AGAGGTGGAGTGATGTTTCAG 57.308 47.619 0.00 0.00 30.85 3.02
2547 10626 2.304180 AGAGGTGGAGTGATGTTTCAGG 59.696 50.000 0.00 0.00 30.85 3.86
2548 10627 2.039084 GAGGTGGAGTGATGTTTCAGGT 59.961 50.000 0.00 0.00 30.85 4.00
2549 10628 2.443255 AGGTGGAGTGATGTTTCAGGTT 59.557 45.455 0.00 0.00 30.85 3.50
2550 10629 2.554032 GGTGGAGTGATGTTTCAGGTTG 59.446 50.000 0.00 0.00 30.85 3.77
2553 10632 3.631686 TGGAGTGATGTTTCAGGTTGTTG 59.368 43.478 0.00 0.00 30.85 3.33
2554 10633 3.550842 GGAGTGATGTTTCAGGTTGTTGC 60.551 47.826 0.00 0.00 30.85 4.17
2555 10634 3.023119 AGTGATGTTTCAGGTTGTTGCA 58.977 40.909 0.00 0.00 30.85 4.08
2556 10635 3.067180 AGTGATGTTTCAGGTTGTTGCAG 59.933 43.478 0.00 0.00 30.85 4.41
2558 10637 3.066621 TGATGTTTCAGGTTGTTGCAGAC 59.933 43.478 0.00 0.00 0.00 3.51
2559 10638 2.441410 TGTTTCAGGTTGTTGCAGACA 58.559 42.857 0.00 0.00 36.19 3.41
2560 10639 2.423185 TGTTTCAGGTTGTTGCAGACAG 59.577 45.455 0.00 0.00 39.94 3.51
2561 10640 2.682856 GTTTCAGGTTGTTGCAGACAGA 59.317 45.455 0.00 0.00 39.94 3.41
2564 10643 0.109342 AGGTTGTTGCAGACAGAGGG 59.891 55.000 0.00 0.00 39.94 4.30
2565 10644 1.518903 GGTTGTTGCAGACAGAGGGC 61.519 60.000 0.00 0.00 39.94 5.19
2566 10645 1.597854 TTGTTGCAGACAGAGGGCG 60.598 57.895 0.00 0.00 39.94 6.13
2567 10646 3.426568 GTTGCAGACAGAGGGCGC 61.427 66.667 0.00 0.00 0.00 6.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
177 178 2.104170 TGGACCGCCTTTTCAGTTTTT 58.896 42.857 0.00 0.00 34.31 1.94
178 179 1.770294 TGGACCGCCTTTTCAGTTTT 58.230 45.000 0.00 0.00 34.31 2.43
183 184 1.228429 CCCTTGGACCGCCTTTTCA 60.228 57.895 0.00 0.00 34.31 2.69
198 199 4.047125 CCACCGAATGCACCCCCT 62.047 66.667 0.00 0.00 0.00 4.79
243 247 2.277084 CGCCATTACTAGTTCCACCAC 58.723 52.381 0.00 0.00 0.00 4.16
247 251 1.406341 GGTGCGCCATTACTAGTTCCA 60.406 52.381 12.58 0.00 34.09 3.53
328 352 4.219725 ACAGGTGCGCCATTAGTAATTTTT 59.780 37.500 20.59 0.00 37.19 1.94
368 392 6.040878 GGTGCGTCATTACTAGTTGAACTAT 58.959 40.000 5.39 0.00 29.08 2.12
386 410 3.311110 ATCACTCCCACGGTGCGT 61.311 61.111 1.68 0.00 42.36 5.24
406 430 7.985752 GCCATTACTAGTTCAAGTACTAATGGT 59.014 37.037 21.09 7.62 40.58 3.55
416 440 3.002656 CCATGCGCCATTACTAGTTCAAG 59.997 47.826 4.18 0.00 0.00 3.02
513 589 2.998480 ACGCACCGTGGGATGGTA 60.998 61.111 21.38 0.00 39.18 3.25
519 595 3.430862 CCAATGACGCACCGTGGG 61.431 66.667 13.69 13.69 41.37 4.61
576 798 7.175073 TCAGAGATGAATAGTTCGTACGTAG 57.825 40.000 16.05 0.00 0.00 3.51
689 914 9.102757 GACTACAGATTCTGAATAATTGCAAGA 57.897 33.333 20.33 0.00 35.18 3.02
792 1503 7.509141 TGCTTCATTGATTGTTCTGAACTTA 57.491 32.000 20.18 9.68 0.00 2.24
838 1549 7.595502 ACGCCGAGATATATAAAGCAATATAGC 59.404 37.037 0.00 0.00 33.04 2.97
840 1551 8.847196 AGACGCCGAGATATATAAAGCAATATA 58.153 33.333 0.00 0.00 0.00 0.86
913 1625 3.000674 GTCATGTCTATCGCAACTGTTCG 60.001 47.826 0.00 0.00 0.00 3.95
949 2275 1.404986 CGTTTGGCTCTTGTCCGGATA 60.405 52.381 7.81 0.10 0.00 2.59
953 2279 1.901650 GCTCGTTTGGCTCTTGTCCG 61.902 60.000 0.00 0.00 0.00 4.79
955 2281 2.080286 TAGCTCGTTTGGCTCTTGTC 57.920 50.000 0.00 0.00 40.74 3.18
1056 2948 0.468226 GTCCAATATCCTGTGGCGGA 59.532 55.000 0.00 0.00 37.50 5.54
1078 2970 1.676006 CTGTGGCGGTGGGAAAATATC 59.324 52.381 0.00 0.00 0.00 1.63
1079 2971 1.283613 TCTGTGGCGGTGGGAAAATAT 59.716 47.619 0.00 0.00 0.00 1.28
1080 2972 0.693622 TCTGTGGCGGTGGGAAAATA 59.306 50.000 0.00 0.00 0.00 1.40
1081 2973 0.039618 ATCTGTGGCGGTGGGAAAAT 59.960 50.000 0.00 0.00 0.00 1.82
1082 2974 0.608035 GATCTGTGGCGGTGGGAAAA 60.608 55.000 0.00 0.00 0.00 2.29
1083 2975 1.002624 GATCTGTGGCGGTGGGAAA 60.003 57.895 0.00 0.00 0.00 3.13
1084 2976 1.488705 AAGATCTGTGGCGGTGGGAA 61.489 55.000 0.00 0.00 0.00 3.97
1085 2977 1.899437 GAAGATCTGTGGCGGTGGGA 61.899 60.000 0.00 0.00 0.00 4.37
1086 2978 1.450312 GAAGATCTGTGGCGGTGGG 60.450 63.158 0.00 0.00 0.00 4.61
1087 2979 1.811266 CGAAGATCTGTGGCGGTGG 60.811 63.158 0.00 0.00 0.00 4.61
1088 2980 2.456119 GCGAAGATCTGTGGCGGTG 61.456 63.158 0.00 0.00 0.00 4.94
1089 2981 2.125512 GCGAAGATCTGTGGCGGT 60.126 61.111 0.00 0.00 0.00 5.68
1090 2982 1.880340 GAGCGAAGATCTGTGGCGG 60.880 63.158 0.00 0.00 41.28 6.13
1091 2983 3.698382 GAGCGAAGATCTGTGGCG 58.302 61.111 0.00 0.00 41.28 5.69
1105 2997 4.925861 GCGGAGGCATGGGAGAGC 62.926 72.222 0.00 0.00 39.62 4.09
1121 3013 1.035932 AGAGGCCATGATTGTGCAGC 61.036 55.000 5.01 0.00 0.00 5.25
1291 4846 2.738314 GTGTTTGGGTCATACGTACCAC 59.262 50.000 8.21 3.07 38.87 4.16
1301 4877 2.988570 ACGTGTTTAGTGTTTGGGTCA 58.011 42.857 0.00 0.00 0.00 4.02
1311 4887 8.151141 TGAGAATCGATCTATACGTGTTTAGT 57.849 34.615 0.00 0.00 38.96 2.24
1359 4937 2.954318 GGTTGATCACCTTCATCATGGG 59.046 50.000 0.00 0.00 43.29 4.00
1408 4986 1.376543 CTTGCAAGCGTCCATCATCT 58.623 50.000 14.65 0.00 0.00 2.90
1448 5026 1.744741 GTGCTCCTGCTTCTGCTCC 60.745 63.158 0.00 0.00 40.48 4.70
1457 5035 2.046892 ACGTCCATGTGCTCCTGC 60.047 61.111 0.00 0.00 40.20 4.85
1500 5078 1.653151 GATGAAGTGAAGCCCGTACC 58.347 55.000 0.00 0.00 0.00 3.34
1549 5132 2.121291 TCATGAGCACCGGCAATAAA 57.879 45.000 0.00 0.00 44.61 1.40
1554 5137 0.809636 CGTATTCATGAGCACCGGCA 60.810 55.000 0.00 0.00 44.61 5.69
1570 5153 4.487948 CGTGTTGTCCTCCTTTTATCGTA 58.512 43.478 0.00 0.00 0.00 3.43
1574 5157 2.374170 ACCCGTGTTGTCCTCCTTTTAT 59.626 45.455 0.00 0.00 0.00 1.40
1577 5160 0.549469 AACCCGTGTTGTCCTCCTTT 59.451 50.000 0.00 0.00 32.13 3.11
1587 5170 2.184167 CAGCGTCCAAACCCGTGTT 61.184 57.895 0.00 0.00 35.82 3.32
1649 5239 7.550196 TCACGGATTTAACTACATTTAGAACCC 59.450 37.037 0.00 0.00 0.00 4.11
1650 5240 8.483307 TCACGGATTTAACTACATTTAGAACC 57.517 34.615 0.00 0.00 0.00 3.62
1674 5264 9.385902 CGAACATTATGGATTCATACAAACATC 57.614 33.333 0.00 0.00 35.75 3.06
1858 5449 4.060038 ACATGTAAGGGCATCTCTAACG 57.940 45.455 0.00 0.00 0.00 3.18
1923 5514 8.635765 TTTTCACCAAGCTACTTCTTGATTAT 57.364 30.769 5.19 0.00 44.61 1.28
1930 5521 6.660949 AGCAATATTTTCACCAAGCTACTTCT 59.339 34.615 0.00 0.00 0.00 2.85
1936 5527 6.100404 TCAAAGCAATATTTTCACCAAGCT 57.900 33.333 0.00 0.00 0.00 3.74
1984 5575 8.991026 TGTTTAATGAATGAGGCAATTCTTTTG 58.009 29.630 14.75 0.00 37.44 2.44
1991 5582 5.721000 TCCCTTGTTTAATGAATGAGGCAAT 59.279 36.000 0.00 0.00 0.00 3.56
2091 5691 3.566322 CCACGGGTGAAAAACAACTATGA 59.434 43.478 0.00 0.00 36.30 2.15
2093 5693 3.558033 ACCACGGGTGAAAAACAACTAT 58.442 40.909 0.00 0.00 36.30 2.12
2147 5750 3.314080 CACCTGCCGTTAGAGTTCAAAAA 59.686 43.478 0.00 0.00 0.00 1.94
2148 5751 2.875933 CACCTGCCGTTAGAGTTCAAAA 59.124 45.455 0.00 0.00 0.00 2.44
2149 5752 2.489971 CACCTGCCGTTAGAGTTCAAA 58.510 47.619 0.00 0.00 0.00 2.69
2150 5753 1.876416 GCACCTGCCGTTAGAGTTCAA 60.876 52.381 0.00 0.00 34.31 2.69
2151 5754 0.320421 GCACCTGCCGTTAGAGTTCA 60.320 55.000 0.00 0.00 34.31 3.18
2152 5755 0.037232 AGCACCTGCCGTTAGAGTTC 60.037 55.000 0.00 0.00 43.38 3.01
2153 5756 0.037232 GAGCACCTGCCGTTAGAGTT 60.037 55.000 0.00 0.00 43.38 3.01
2154 5757 0.900647 AGAGCACCTGCCGTTAGAGT 60.901 55.000 0.00 0.00 43.38 3.24
2155 5758 1.103803 TAGAGCACCTGCCGTTAGAG 58.896 55.000 0.00 0.00 43.38 2.43
2156 5759 0.815734 GTAGAGCACCTGCCGTTAGA 59.184 55.000 0.00 0.00 43.38 2.10
2158 5761 1.895238 GGTAGAGCACCTGCCGTTA 59.105 57.895 0.00 0.00 44.79 3.18
2188 5791 9.998106 TGCTAACTTTCCTGTATATTCCTTATC 57.002 33.333 0.00 0.00 0.00 1.75
2190 5793 8.989131 ACTGCTAACTTTCCTGTATATTCCTTA 58.011 33.333 0.00 0.00 0.00 2.69
2191 5794 7.862675 ACTGCTAACTTTCCTGTATATTCCTT 58.137 34.615 0.00 0.00 0.00 3.36
2192 5795 7.439108 ACTGCTAACTTTCCTGTATATTCCT 57.561 36.000 0.00 0.00 0.00 3.36
2193 5796 6.421202 CGACTGCTAACTTTCCTGTATATTCC 59.579 42.308 0.00 0.00 0.00 3.01
2194 5797 6.979238 ACGACTGCTAACTTTCCTGTATATTC 59.021 38.462 0.00 0.00 0.00 1.75
2195 5798 6.875076 ACGACTGCTAACTTTCCTGTATATT 58.125 36.000 0.00 0.00 0.00 1.28
2196 5799 6.096423 TGACGACTGCTAACTTTCCTGTATAT 59.904 38.462 0.00 0.00 0.00 0.86
2197 5800 5.416639 TGACGACTGCTAACTTTCCTGTATA 59.583 40.000 0.00 0.00 0.00 1.47
2198 5801 4.219944 TGACGACTGCTAACTTTCCTGTAT 59.780 41.667 0.00 0.00 0.00 2.29
2199 5802 3.570975 TGACGACTGCTAACTTTCCTGTA 59.429 43.478 0.00 0.00 0.00 2.74
2200 5803 2.364324 TGACGACTGCTAACTTTCCTGT 59.636 45.455 0.00 0.00 0.00 4.00
2201 5804 2.989840 CTGACGACTGCTAACTTTCCTG 59.010 50.000 0.00 0.00 0.00 3.86
2202 5805 2.891580 TCTGACGACTGCTAACTTTCCT 59.108 45.455 0.00 0.00 0.00 3.36
2203 5806 3.299340 TCTGACGACTGCTAACTTTCC 57.701 47.619 0.00 0.00 0.00 3.13
2204 5807 3.675698 CCTTCTGACGACTGCTAACTTTC 59.324 47.826 0.00 0.00 0.00 2.62
2205 5808 3.654414 CCTTCTGACGACTGCTAACTTT 58.346 45.455 0.00 0.00 0.00 2.66
2206 5809 2.610727 GCCTTCTGACGACTGCTAACTT 60.611 50.000 0.00 0.00 0.00 2.66
2207 5810 1.067495 GCCTTCTGACGACTGCTAACT 60.067 52.381 0.00 0.00 0.00 2.24
2208 5811 1.351153 GCCTTCTGACGACTGCTAAC 58.649 55.000 0.00 0.00 0.00 2.34
2209 5812 0.109272 CGCCTTCTGACGACTGCTAA 60.109 55.000 0.00 0.00 0.00 3.09
2210 5813 1.241990 ACGCCTTCTGACGACTGCTA 61.242 55.000 0.00 0.00 0.00 3.49
2211 5814 2.088674 AACGCCTTCTGACGACTGCT 62.089 55.000 0.00 0.00 0.00 4.24
2212 5815 1.664965 AACGCCTTCTGACGACTGC 60.665 57.895 0.00 0.00 0.00 4.40
2213 5816 1.891060 GCAACGCCTTCTGACGACTG 61.891 60.000 0.00 0.00 0.00 3.51
2214 5817 1.664965 GCAACGCCTTCTGACGACT 60.665 57.895 0.00 0.00 0.00 4.18
2215 5818 2.668280 GGCAACGCCTTCTGACGAC 61.668 63.158 0.00 0.00 46.69 4.34
2216 5819 2.357034 GGCAACGCCTTCTGACGA 60.357 61.111 0.00 0.00 46.69 4.20
2226 5829 1.601914 CCCTTTTTGTACAGGCAACGC 60.602 52.381 0.00 0.00 46.39 4.84
2227 5830 1.000717 CCCCTTTTTGTACAGGCAACG 60.001 52.381 0.00 0.00 46.39 4.10
2228 5831 2.312390 TCCCCTTTTTGTACAGGCAAC 58.688 47.619 0.00 0.00 0.00 4.17
2229 5832 2.757894 TCCCCTTTTTGTACAGGCAA 57.242 45.000 0.00 0.00 0.00 4.52
2230 5833 2.696187 GTTTCCCCTTTTTGTACAGGCA 59.304 45.455 0.00 0.00 0.00 4.75
2231 5834 2.963101 AGTTTCCCCTTTTTGTACAGGC 59.037 45.455 0.00 0.00 0.00 4.85
2232 5835 6.718522 TTTAGTTTCCCCTTTTTGTACAGG 57.281 37.500 0.00 0.00 0.00 4.00
2233 5836 7.490079 GTGTTTTAGTTTCCCCTTTTTGTACAG 59.510 37.037 0.00 0.00 0.00 2.74
2234 5837 7.178805 AGTGTTTTAGTTTCCCCTTTTTGTACA 59.821 33.333 0.00 0.00 0.00 2.90
2235 5838 7.549839 AGTGTTTTAGTTTCCCCTTTTTGTAC 58.450 34.615 0.00 0.00 0.00 2.90
2236 5839 7.721409 AGTGTTTTAGTTTCCCCTTTTTGTA 57.279 32.000 0.00 0.00 0.00 2.41
2237 5840 6.614694 AGTGTTTTAGTTTCCCCTTTTTGT 57.385 33.333 0.00 0.00 0.00 2.83
2238 5841 7.778083 AGTAGTGTTTTAGTTTCCCCTTTTTG 58.222 34.615 0.00 0.00 0.00 2.44
2239 5842 7.837689 AGAGTAGTGTTTTAGTTTCCCCTTTTT 59.162 33.333 0.00 0.00 0.00 1.94
2240 5843 7.351952 AGAGTAGTGTTTTAGTTTCCCCTTTT 58.648 34.615 0.00 0.00 0.00 2.27
2241 5844 6.907961 AGAGTAGTGTTTTAGTTTCCCCTTT 58.092 36.000 0.00 0.00 0.00 3.11
2242 5845 6.100714 TGAGAGTAGTGTTTTAGTTTCCCCTT 59.899 38.462 0.00 0.00 0.00 3.95
2243 5846 5.605488 TGAGAGTAGTGTTTTAGTTTCCCCT 59.395 40.000 0.00 0.00 0.00 4.79
2244 5847 5.861727 TGAGAGTAGTGTTTTAGTTTCCCC 58.138 41.667 0.00 0.00 0.00 4.81
2245 5848 7.981102 ATTGAGAGTAGTGTTTTAGTTTCCC 57.019 36.000 0.00 0.00 0.00 3.97
2257 5860 9.243637 GCTGACTTAGATTTATTGAGAGTAGTG 57.756 37.037 0.00 0.00 0.00 2.74
2258 5861 9.196139 AGCTGACTTAGATTTATTGAGAGTAGT 57.804 33.333 0.00 0.00 0.00 2.73
2261 5864 9.160496 CAAAGCTGACTTAGATTTATTGAGAGT 57.840 33.333 0.00 0.00 42.76 3.24
2262 5865 9.376075 TCAAAGCTGACTTAGATTTATTGAGAG 57.624 33.333 0.00 0.00 42.76 3.20
2263 5866 9.896645 ATCAAAGCTGACTTAGATTTATTGAGA 57.103 29.630 0.00 0.00 42.76 3.27
2265 5868 9.671279 TGATCAAAGCTGACTTAGATTTATTGA 57.329 29.630 0.00 0.00 42.76 2.57
2266 5869 9.932699 CTGATCAAAGCTGACTTAGATTTATTG 57.067 33.333 0.00 0.00 42.76 1.90
2267 5870 8.619546 GCTGATCAAAGCTGACTTAGATTTATT 58.380 33.333 0.00 0.00 42.76 1.40
2268 5871 7.042187 CGCTGATCAAAGCTGACTTAGATTTAT 60.042 37.037 0.00 0.00 42.76 1.40
2269 5872 6.256539 CGCTGATCAAAGCTGACTTAGATTTA 59.743 38.462 0.00 0.00 42.76 1.40
2270 5873 5.064452 CGCTGATCAAAGCTGACTTAGATTT 59.936 40.000 0.00 0.00 45.33 2.17
2271 5874 4.569966 CGCTGATCAAAGCTGACTTAGATT 59.430 41.667 0.00 0.00 41.24 2.40
2272 5875 4.118410 CGCTGATCAAAGCTGACTTAGAT 58.882 43.478 0.00 0.00 41.24 1.98
2273 5876 3.193479 TCGCTGATCAAAGCTGACTTAGA 59.807 43.478 0.00 0.00 41.24 2.10
2274 5877 3.515630 TCGCTGATCAAAGCTGACTTAG 58.484 45.455 0.00 0.00 41.24 2.18
2275 5878 3.193479 TCTCGCTGATCAAAGCTGACTTA 59.807 43.478 0.00 0.00 41.24 2.24
2276 5879 2.028658 TCTCGCTGATCAAAGCTGACTT 60.029 45.455 0.00 0.00 41.24 3.01
2277 5880 1.547820 TCTCGCTGATCAAAGCTGACT 59.452 47.619 0.00 0.00 41.24 3.41
2278 5881 1.925847 CTCTCGCTGATCAAAGCTGAC 59.074 52.381 0.00 0.00 41.24 3.51
2279 5882 1.134877 CCTCTCGCTGATCAAAGCTGA 60.135 52.381 0.00 0.00 41.24 4.26
2280 5883 1.134877 TCCTCTCGCTGATCAAAGCTG 60.135 52.381 0.00 0.00 41.24 4.24
2281 5884 1.134848 GTCCTCTCGCTGATCAAAGCT 60.135 52.381 0.00 0.00 41.24 3.74
2282 5885 1.285578 GTCCTCTCGCTGATCAAAGC 58.714 55.000 0.00 0.00 39.94 3.51
2283 5886 2.266554 GTGTCCTCTCGCTGATCAAAG 58.733 52.381 0.00 0.00 0.00 2.77
2284 5887 1.066858 GGTGTCCTCTCGCTGATCAAA 60.067 52.381 0.00 0.00 0.00 2.69
2285 5888 0.532573 GGTGTCCTCTCGCTGATCAA 59.467 55.000 0.00 0.00 0.00 2.57
2286 5889 0.611896 TGGTGTCCTCTCGCTGATCA 60.612 55.000 0.00 0.00 0.00 2.92
2287 5890 0.749649 ATGGTGTCCTCTCGCTGATC 59.250 55.000 0.00 0.00 0.00 2.92
2288 5891 0.749649 GATGGTGTCCTCTCGCTGAT 59.250 55.000 0.00 0.00 0.00 2.90
2289 5892 1.323271 GGATGGTGTCCTCTCGCTGA 61.323 60.000 0.00 0.00 44.16 4.26
2290 5893 1.142748 GGATGGTGTCCTCTCGCTG 59.857 63.158 0.00 0.00 44.16 5.18
2291 5894 2.418910 CGGATGGTGTCCTCTCGCT 61.419 63.158 0.00 0.00 45.46 4.93
2292 5895 2.105128 CGGATGGTGTCCTCTCGC 59.895 66.667 0.00 0.00 45.46 5.03
2293 5896 2.105128 GCGGATGGTGTCCTCTCG 59.895 66.667 0.00 0.00 45.46 4.04
2294 5897 1.142748 CAGCGGATGGTGTCCTCTC 59.857 63.158 0.00 0.00 40.08 3.20
2295 5898 1.305297 TCAGCGGATGGTGTCCTCT 60.305 57.895 0.00 0.00 42.83 3.69
2296 5899 1.142748 CTCAGCGGATGGTGTCCTC 59.857 63.158 0.00 0.00 45.46 3.71
2297 5900 2.362369 CCTCAGCGGATGGTGTCCT 61.362 63.158 0.00 0.00 45.46 3.85
2298 5901 2.185310 AACCTCAGCGGATGGTGTCC 62.185 60.000 8.30 0.00 43.99 4.02
2299 5902 1.021390 CAACCTCAGCGGATGGTGTC 61.021 60.000 8.30 0.00 43.99 3.67
2300 5903 1.003355 CAACCTCAGCGGATGGTGT 60.003 57.895 8.30 0.00 43.99 4.16
2301 5904 0.107508 ATCAACCTCAGCGGATGGTG 60.108 55.000 0.83 0.83 44.96 4.17
2302 5905 0.107508 CATCAACCTCAGCGGATGGT 60.108 55.000 0.00 2.96 36.30 3.55
2303 5906 0.107508 ACATCAACCTCAGCGGATGG 60.108 55.000 0.00 0.00 41.03 3.51
2304 5907 1.012086 CACATCAACCTCAGCGGATG 58.988 55.000 0.00 0.00 42.12 3.51
2305 5908 0.615331 ACACATCAACCTCAGCGGAT 59.385 50.000 0.00 0.00 36.31 4.18
2306 5909 0.396435 AACACATCAACCTCAGCGGA 59.604 50.000 0.00 0.00 36.31 5.54
2307 5910 0.518636 CAACACATCAACCTCAGCGG 59.481 55.000 0.00 0.00 39.35 5.52
2308 5911 1.229428 ACAACACATCAACCTCAGCG 58.771 50.000 0.00 0.00 0.00 5.18
2309 5912 2.618241 TCAACAACACATCAACCTCAGC 59.382 45.455 0.00 0.00 0.00 4.26
2310 5913 4.576053 TCTTCAACAACACATCAACCTCAG 59.424 41.667 0.00 0.00 0.00 3.35
2311 5914 4.335315 GTCTTCAACAACACATCAACCTCA 59.665 41.667 0.00 0.00 0.00 3.86
2312 5915 4.261197 GGTCTTCAACAACACATCAACCTC 60.261 45.833 0.00 0.00 0.00 3.85
2313 5916 3.632145 GGTCTTCAACAACACATCAACCT 59.368 43.478 0.00 0.00 0.00 3.50
2314 5917 3.243401 GGGTCTTCAACAACACATCAACC 60.243 47.826 0.00 0.00 0.00 3.77
2315 5918 3.632145 AGGGTCTTCAACAACACATCAAC 59.368 43.478 0.00 0.00 0.00 3.18
2316 5919 3.897239 AGGGTCTTCAACAACACATCAA 58.103 40.909 0.00 0.00 0.00 2.57
2317 5920 3.576078 AGGGTCTTCAACAACACATCA 57.424 42.857 0.00 0.00 0.00 3.07
2318 5921 5.473504 ACATAAGGGTCTTCAACAACACATC 59.526 40.000 0.00 0.00 0.00 3.06
2319 5922 5.385198 ACATAAGGGTCTTCAACAACACAT 58.615 37.500 0.00 0.00 0.00 3.21
2320 5923 4.787551 ACATAAGGGTCTTCAACAACACA 58.212 39.130 0.00 0.00 0.00 3.72
2321 5924 5.278315 GGAACATAAGGGTCTTCAACAACAC 60.278 44.000 0.00 0.00 0.00 3.32
2323 5926 5.070685 AGGAACATAAGGGTCTTCAACAAC 58.929 41.667 0.00 0.00 0.00 3.32
2325 5928 4.597507 AGAGGAACATAAGGGTCTTCAACA 59.402 41.667 0.00 0.00 0.00 3.33
2327 5930 4.844085 TGAGAGGAACATAAGGGTCTTCAA 59.156 41.667 0.00 0.00 0.00 2.69
2328 5931 4.425772 TGAGAGGAACATAAGGGTCTTCA 58.574 43.478 0.00 0.00 0.00 3.02
2335 5938 8.790718 CATATTTGGAATGAGAGGAACATAAGG 58.209 37.037 0.00 0.00 0.00 2.69
2337 5940 7.231317 GGCATATTTGGAATGAGAGGAACATAA 59.769 37.037 0.00 0.00 0.00 1.90
2338 5941 6.716628 GGCATATTTGGAATGAGAGGAACATA 59.283 38.462 0.00 0.00 0.00 2.29
2340 5943 4.889409 GGCATATTTGGAATGAGAGGAACA 59.111 41.667 0.00 0.00 0.00 3.18
2343 5946 4.794311 TGGCATATTTGGAATGAGAGGA 57.206 40.909 0.00 0.00 0.00 3.71
2344 5947 4.261909 GCTTGGCATATTTGGAATGAGAGG 60.262 45.833 0.00 0.00 0.00 3.69
2350 5953 4.734398 TTTCGCTTGGCATATTTGGAAT 57.266 36.364 0.00 0.00 0.00 3.01
2356 5959 3.923017 GCCTATTTCGCTTGGCATATT 57.077 42.857 0.00 0.00 44.34 1.28
2361 5964 1.064783 GCTGCCTATTTCGCTTGGC 59.935 57.895 0.00 0.00 45.10 4.52
2362 5965 1.089481 TCGCTGCCTATTTCGCTTGG 61.089 55.000 0.00 0.00 0.00 3.61
2363 5966 0.026803 GTCGCTGCCTATTTCGCTTG 59.973 55.000 0.00 0.00 0.00 4.01
2364 5967 1.090052 GGTCGCTGCCTATTTCGCTT 61.090 55.000 0.00 0.00 0.00 4.68
2365 5968 1.521681 GGTCGCTGCCTATTTCGCT 60.522 57.895 0.00 0.00 0.00 4.93
2366 5969 2.871427 CGGTCGCTGCCTATTTCGC 61.871 63.158 0.00 0.00 0.00 4.70
2367 5970 2.871427 GCGGTCGCTGCCTATTTCG 61.871 63.158 8.20 0.00 38.26 3.46
2368 5971 2.871427 CGCGGTCGCTGCCTATTTC 61.871 63.158 13.51 0.00 39.32 2.17
2369 5972 2.890474 CGCGGTCGCTGCCTATTT 60.890 61.111 13.51 0.00 39.32 1.40
2370 5973 4.891727 CCGCGGTCGCTGCCTATT 62.892 66.667 19.50 0.00 39.32 1.73
2386 5989 0.034670 AGAGTTCCAAGGAGCATGCC 60.035 55.000 15.66 5.80 0.00 4.40
2387 5990 1.093159 CAGAGTTCCAAGGAGCATGC 58.907 55.000 10.51 10.51 0.00 4.06
2388 5991 2.082231 CACAGAGTTCCAAGGAGCATG 58.918 52.381 5.74 6.25 0.00 4.06
2389 5992 1.980765 TCACAGAGTTCCAAGGAGCAT 59.019 47.619 5.74 0.00 0.00 3.79
2391 5994 1.943507 GCTCACAGAGTTCCAAGGAGC 60.944 57.143 0.00 0.00 39.38 4.70
2392 5995 1.345741 TGCTCACAGAGTTCCAAGGAG 59.654 52.381 0.00 0.00 31.39 3.69
2393 5996 1.423584 TGCTCACAGAGTTCCAAGGA 58.576 50.000 0.00 0.00 31.39 3.36
2404 6007 1.294780 GTGGAGGACCTGCTCACAG 59.705 63.158 14.77 0.00 44.05 3.66
2405 6008 2.217038 GGTGGAGGACCTGCTCACA 61.217 63.158 14.77 0.00 42.25 3.58
2406 6009 1.557269 ATGGTGGAGGACCTGCTCAC 61.557 60.000 14.77 11.70 46.32 3.51
2407 6010 0.842030 AATGGTGGAGGACCTGCTCA 60.842 55.000 14.77 12.48 46.32 4.26
2408 6011 0.393537 CAATGGTGGAGGACCTGCTC 60.394 60.000 14.77 10.53 46.32 4.26
2409 6012 0.842030 TCAATGGTGGAGGACCTGCT 60.842 55.000 14.77 0.00 46.32 4.24
2412 6015 1.903877 CGCTCAATGGTGGAGGACCT 61.904 60.000 0.00 0.00 46.32 3.85
2413 6016 1.450312 CGCTCAATGGTGGAGGACC 60.450 63.158 0.00 0.00 46.37 4.46
2414 6017 0.179000 ATCGCTCAATGGTGGAGGAC 59.821 55.000 0.00 0.00 32.96 3.85
2415 6018 0.465705 GATCGCTCAATGGTGGAGGA 59.534 55.000 0.00 0.00 32.96 3.71
2417 6020 0.103026 TCGATCGCTCAATGGTGGAG 59.897 55.000 11.09 0.00 35.47 3.86
2418 6021 0.179111 GTCGATCGCTCAATGGTGGA 60.179 55.000 11.09 0.00 0.00 4.02
2419 6022 0.460109 TGTCGATCGCTCAATGGTGG 60.460 55.000 11.09 0.00 0.00 4.61
2429 8246 0.454452 GCCAACCTTTTGTCGATCGC 60.454 55.000 11.09 6.41 0.00 4.58
2433 8250 1.452145 GCCTGCCAACCTTTTGTCGA 61.452 55.000 0.00 0.00 0.00 4.20
2434 8251 1.007387 GCCTGCCAACCTTTTGTCG 60.007 57.895 0.00 0.00 0.00 4.35
2435 8252 0.032540 CTGCCTGCCAACCTTTTGTC 59.967 55.000 0.00 0.00 0.00 3.18
2439 8256 2.450476 CTATTCTGCCTGCCAACCTTT 58.550 47.619 0.00 0.00 0.00 3.11
2441 8258 0.257039 CCTATTCTGCCTGCCAACCT 59.743 55.000 0.00 0.00 0.00 3.50
2442 8259 0.753111 CCCTATTCTGCCTGCCAACC 60.753 60.000 0.00 0.00 0.00 3.77
2445 8262 2.274948 CTGCCCTATTCTGCCTGCCA 62.275 60.000 0.00 0.00 0.00 4.92
2447 8264 2.192187 GCTGCCCTATTCTGCCTGC 61.192 63.158 0.00 0.00 0.00 4.85
2449 8266 1.225704 GTGCTGCCCTATTCTGCCT 59.774 57.895 0.00 0.00 0.00 4.75
2454 8271 1.819632 CCACGGTGCTGCCCTATTC 60.820 63.158 1.68 0.00 0.00 1.75
2456 8273 4.489771 GCCACGGTGCTGCCCTAT 62.490 66.667 1.68 0.00 0.00 2.57
2469 10548 2.954753 CTTTGTCTCGTGCGGCCAC 61.955 63.158 2.24 0.00 38.62 5.01
2470 10549 2.664851 CTTTGTCTCGTGCGGCCA 60.665 61.111 2.24 0.00 0.00 5.36
2476 10555 0.868406 GGTCCAAGCTTTGTCTCGTG 59.132 55.000 0.00 0.00 0.00 4.35
2477 10556 0.468226 TGGTCCAAGCTTTGTCTCGT 59.532 50.000 0.00 0.00 0.00 4.18
2480 10559 1.490490 TGTCTGGTCCAAGCTTTGTCT 59.510 47.619 0.00 0.00 0.00 3.41
2482 10561 2.508526 GATGTCTGGTCCAAGCTTTGT 58.491 47.619 0.00 0.00 0.00 2.83
2486 10565 1.004044 CAAGGATGTCTGGTCCAAGCT 59.996 52.381 0.00 0.00 38.25 3.74
2487 10566 1.457346 CAAGGATGTCTGGTCCAAGC 58.543 55.000 0.00 0.00 38.25 4.01
2490 10569 1.203300 TCTCCAAGGATGTCTGGTCCA 60.203 52.381 0.00 0.00 38.25 4.02
2493 10572 2.569404 GTCTTCTCCAAGGATGTCTGGT 59.431 50.000 0.00 0.00 0.00 4.00
2495 10574 2.886081 CGTCTTCTCCAAGGATGTCTG 58.114 52.381 0.00 0.00 0.00 3.51
2496 10575 1.205893 GCGTCTTCTCCAAGGATGTCT 59.794 52.381 0.00 0.00 0.00 3.41
2497 10576 1.066858 TGCGTCTTCTCCAAGGATGTC 60.067 52.381 0.00 0.00 0.00 3.06
2498 10577 0.976641 TGCGTCTTCTCCAAGGATGT 59.023 50.000 0.00 0.00 0.00 3.06
2499 10578 2.005451 CTTGCGTCTTCTCCAAGGATG 58.995 52.381 0.00 0.00 33.96 3.51
2500 10579 1.625818 ACTTGCGTCTTCTCCAAGGAT 59.374 47.619 0.00 0.00 40.08 3.24
2501 10580 1.048601 ACTTGCGTCTTCTCCAAGGA 58.951 50.000 0.00 0.00 40.08 3.36
2502 10581 1.151668 CACTTGCGTCTTCTCCAAGG 58.848 55.000 0.00 0.00 40.08 3.61
2503 10582 1.871080 ACACTTGCGTCTTCTCCAAG 58.129 50.000 0.00 0.00 41.20 3.61
2504 10583 1.939934 CAACACTTGCGTCTTCTCCAA 59.060 47.619 0.00 0.00 0.00 3.53
2506 10585 1.865865 TCAACACTTGCGTCTTCTCC 58.134 50.000 0.00 0.00 0.00 3.71
2507 10586 3.123804 TCTTCAACACTTGCGTCTTCTC 58.876 45.455 0.00 0.00 0.00 2.87
2508 10587 3.126831 CTCTTCAACACTTGCGTCTTCT 58.873 45.455 0.00 0.00 0.00 2.85
2509 10588 2.221981 CCTCTTCAACACTTGCGTCTTC 59.778 50.000 0.00 0.00 0.00 2.87
2510 10589 2.213499 CCTCTTCAACACTTGCGTCTT 58.787 47.619 0.00 0.00 0.00 3.01
2511 10590 1.139058 ACCTCTTCAACACTTGCGTCT 59.861 47.619 0.00 0.00 0.00 4.18
2512 10591 1.261619 CACCTCTTCAACACTTGCGTC 59.738 52.381 0.00 0.00 0.00 5.19
2513 10592 1.299541 CACCTCTTCAACACTTGCGT 58.700 50.000 0.00 0.00 0.00 5.24
2514 10593 0.588252 CCACCTCTTCAACACTTGCG 59.412 55.000 0.00 0.00 0.00 4.85
2515 10594 1.876156 CTCCACCTCTTCAACACTTGC 59.124 52.381 0.00 0.00 0.00 4.01
2516 10595 2.874701 CACTCCACCTCTTCAACACTTG 59.125 50.000 0.00 0.00 0.00 3.16
2518 10597 2.398588 TCACTCCACCTCTTCAACACT 58.601 47.619 0.00 0.00 0.00 3.55
2519 10598 2.910688 TCACTCCACCTCTTCAACAC 57.089 50.000 0.00 0.00 0.00 3.32
2520 10599 2.705658 ACATCACTCCACCTCTTCAACA 59.294 45.455 0.00 0.00 0.00 3.33
2521 10600 3.409026 ACATCACTCCACCTCTTCAAC 57.591 47.619 0.00 0.00 0.00 3.18
2523 10602 3.390967 TGAAACATCACTCCACCTCTTCA 59.609 43.478 0.00 0.00 0.00 3.02
2524 10603 3.999663 CTGAAACATCACTCCACCTCTTC 59.000 47.826 0.00 0.00 0.00 2.87
2525 10604 3.244700 CCTGAAACATCACTCCACCTCTT 60.245 47.826 0.00 0.00 0.00 2.85
2526 10605 2.304180 CCTGAAACATCACTCCACCTCT 59.696 50.000 0.00 0.00 0.00 3.69
2527 10606 2.039084 ACCTGAAACATCACTCCACCTC 59.961 50.000 0.00 0.00 0.00 3.85
2529 10608 2.554032 CAACCTGAAACATCACTCCACC 59.446 50.000 0.00 0.00 0.00 4.61
2530 10609 3.214328 ACAACCTGAAACATCACTCCAC 58.786 45.455 0.00 0.00 0.00 4.02
2531 10610 3.576078 ACAACCTGAAACATCACTCCA 57.424 42.857 0.00 0.00 0.00 3.86
2532 10611 3.550842 GCAACAACCTGAAACATCACTCC 60.551 47.826 0.00 0.00 0.00 3.85
2533 10612 3.066621 TGCAACAACCTGAAACATCACTC 59.933 43.478 0.00 0.00 0.00 3.51
2535 10614 3.066621 TCTGCAACAACCTGAAACATCAC 59.933 43.478 0.00 0.00 0.00 3.06
2536 10615 3.066621 GTCTGCAACAACCTGAAACATCA 59.933 43.478 0.00 0.00 0.00 3.07
2537 10616 3.066621 TGTCTGCAACAACCTGAAACATC 59.933 43.478 0.00 0.00 34.03 3.06
2538 10617 3.023119 TGTCTGCAACAACCTGAAACAT 58.977 40.909 0.00 0.00 34.03 2.71
2540 10619 2.682856 TCTGTCTGCAACAACCTGAAAC 59.317 45.455 0.00 0.00 37.45 2.78
2541 10620 2.945008 CTCTGTCTGCAACAACCTGAAA 59.055 45.455 0.00 0.00 37.45 2.69
2542 10621 2.564771 CTCTGTCTGCAACAACCTGAA 58.435 47.619 0.00 0.00 37.45 3.02
2544 10623 1.233019 CCTCTGTCTGCAACAACCTG 58.767 55.000 0.00 0.00 37.45 4.00
2545 10624 0.109342 CCCTCTGTCTGCAACAACCT 59.891 55.000 0.00 0.00 37.45 3.50
2546 10625 1.518903 GCCCTCTGTCTGCAACAACC 61.519 60.000 0.00 0.00 37.45 3.77
2547 10626 1.845809 CGCCCTCTGTCTGCAACAAC 61.846 60.000 0.00 0.00 37.45 3.32
2548 10627 1.597854 CGCCCTCTGTCTGCAACAA 60.598 57.895 0.00 0.00 37.45 2.83
2549 10628 2.031012 CGCCCTCTGTCTGCAACA 59.969 61.111 0.00 0.00 36.18 3.33
2550 10629 3.426568 GCGCCCTCTGTCTGCAAC 61.427 66.667 0.00 0.00 0.00 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.