Multiple sequence alignment - TraesCS5D01G058400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G058400 chr5D 100.000 3700 0 0 1 3700 54999203 55002902 0.000000e+00 6833.0
1 TraesCS5D01G058400 chr5D 95.873 315 9 1 2596 2906 37856306 37856620 1.190000e-139 507.0
2 TraesCS5D01G058400 chr5B 96.332 1554 49 5 998 2551 57508002 57509547 0.000000e+00 2547.0
3 TraesCS5D01G058400 chr5B 90.012 801 46 8 2905 3700 57519170 57519941 0.000000e+00 1005.0
4 TraesCS5D01G058400 chr5B 94.473 579 30 2 1 578 57507092 57507669 0.000000e+00 891.0
5 TraesCS5D01G058400 chr5A 94.744 1579 71 8 878 2451 42742918 42741347 0.000000e+00 2446.0
6 TraesCS5D01G058400 chr5A 93.387 741 35 5 1 727 42743799 42743059 0.000000e+00 1085.0
7 TraesCS5D01G058400 chr5A 86.351 740 80 12 2966 3697 470048245 470048971 0.000000e+00 787.0
8 TraesCS5D01G058400 chr5A 88.728 621 48 7 2909 3528 42741137 42740538 0.000000e+00 739.0
9 TraesCS5D01G058400 chr5A 93.770 305 13 2 2605 2905 648889808 648890110 1.570000e-123 453.0
10 TraesCS5D01G058400 chr5A 92.105 38 2 1 2453 2490 22728711 22728747 7.000000e-03 52.8
11 TraesCS5D01G058400 chr5A 92.105 38 2 1 2453 2490 22737684 22737720 7.000000e-03 52.8
12 TraesCS5D01G058400 chr4B 86.962 744 76 14 2966 3700 24697223 24697954 0.000000e+00 817.0
13 TraesCS5D01G058400 chr3D 86.486 740 85 7 2966 3700 137470018 137469289 0.000000e+00 798.0
14 TraesCS5D01G058400 chr3D 86.486 740 82 10 2967 3700 416934671 416933944 0.000000e+00 797.0
15 TraesCS5D01G058400 chr7D 85.965 741 88 10 2966 3700 528577261 528576531 0.000000e+00 778.0
16 TraesCS5D01G058400 chr7D 93.811 307 12 4 2606 2907 190143309 190143005 4.360000e-124 455.0
17 TraesCS5D01G058400 chr7D 97.059 34 0 1 2449 2482 535926293 535926261 5.160000e-04 56.5
18 TraesCS5D01G058400 chr6B 86.003 743 84 13 2966 3700 165325628 165324898 0.000000e+00 778.0
19 TraesCS5D01G058400 chr2A 84.549 809 96 20 2905 3700 716156143 716156935 0.000000e+00 774.0
20 TraesCS5D01G058400 chr3A 85.887 744 84 13 2966 3700 737952451 737953182 0.000000e+00 773.0
21 TraesCS5D01G058400 chr4A 85.200 750 91 14 2960 3699 724485180 724485919 0.000000e+00 752.0
22 TraesCS5D01G058400 chr4D 96.753 308 8 1 2597 2904 489166774 489166469 2.550000e-141 512.0
23 TraesCS5D01G058400 chr4D 100.000 31 0 0 2453 2483 9340729 9340759 1.440000e-04 58.4
24 TraesCS5D01G058400 chr3B 91.892 333 16 7 2592 2918 821856857 821857184 4.360000e-124 455.0
25 TraesCS5D01G058400 chr7A 93.750 304 14 2 2605 2904 698759108 698758806 5.630000e-123 451.0
26 TraesCS5D01G058400 chr6D 95.374 281 9 1 2628 2904 424298213 424298493 9.430000e-121 444.0
27 TraesCS5D01G058400 chr6D 94.595 37 1 1 2446 2482 407522179 407522214 5.160000e-04 56.5
28 TraesCS5D01G058400 chr7B 92.880 309 15 2 2605 2906 488140915 488140607 3.390000e-120 442.0
29 TraesCS5D01G058400 chr7B 90.805 87 4 1 2823 2905 635489950 635489864 3.020000e-21 113.0
30 TraesCS5D01G058400 chr7B 96.000 50 2 0 2604 2653 635490435 635490386 8.520000e-12 82.4
31 TraesCS5D01G058400 chr2B 100.000 29 0 0 2453 2481 794307217 794307245 2.000000e-03 54.7
32 TraesCS5D01G058400 chr2B 94.286 35 1 1 2446 2480 695434783 695434816 7.000000e-03 52.8
33 TraesCS5D01G058400 chr2D 94.286 35 1 1 2446 2480 522499608 522499641 7.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G058400 chr5D 54999203 55002902 3699 False 6833.000000 6833 100.000000 1 3700 1 chr5D.!!$F2 3699
1 TraesCS5D01G058400 chr5B 57507092 57509547 2455 False 1719.000000 2547 95.402500 1 2551 2 chr5B.!!$F2 2550
2 TraesCS5D01G058400 chr5B 57519170 57519941 771 False 1005.000000 1005 90.012000 2905 3700 1 chr5B.!!$F1 795
3 TraesCS5D01G058400 chr5A 42740538 42743799 3261 True 1423.333333 2446 92.286333 1 3528 3 chr5A.!!$R1 3527
4 TraesCS5D01G058400 chr5A 470048245 470048971 726 False 787.000000 787 86.351000 2966 3697 1 chr5A.!!$F3 731
5 TraesCS5D01G058400 chr4B 24697223 24697954 731 False 817.000000 817 86.962000 2966 3700 1 chr4B.!!$F1 734
6 TraesCS5D01G058400 chr3D 137469289 137470018 729 True 798.000000 798 86.486000 2966 3700 1 chr3D.!!$R1 734
7 TraesCS5D01G058400 chr3D 416933944 416934671 727 True 797.000000 797 86.486000 2967 3700 1 chr3D.!!$R2 733
8 TraesCS5D01G058400 chr7D 528576531 528577261 730 True 778.000000 778 85.965000 2966 3700 1 chr7D.!!$R2 734
9 TraesCS5D01G058400 chr6B 165324898 165325628 730 True 778.000000 778 86.003000 2966 3700 1 chr6B.!!$R1 734
10 TraesCS5D01G058400 chr2A 716156143 716156935 792 False 774.000000 774 84.549000 2905 3700 1 chr2A.!!$F1 795
11 TraesCS5D01G058400 chr3A 737952451 737953182 731 False 773.000000 773 85.887000 2966 3700 1 chr3A.!!$F1 734
12 TraesCS5D01G058400 chr4A 724485180 724485919 739 False 752.000000 752 85.200000 2960 3699 1 chr4A.!!$F1 739

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
808 846 0.105964 TGTGTCCTTGTTGAGACGGG 59.894 55.0 0.0 0.0 35.71 5.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2784 3017 0.188342 AGCCAACAAGGGATGGTGTT 59.812 50.0 0.0 0.0 45.81 3.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
129 130 4.921834 GAGTTTCAGCTCCTCCCG 57.078 61.111 0.00 0.00 0.00 5.14
198 199 1.260206 CACACGTCGCTACTAGCTTG 58.740 55.000 6.50 0.00 39.60 4.01
292 293 1.471287 GCAGCATCAAGAACAGCATGA 59.529 47.619 0.00 0.00 39.69 3.07
309 310 0.250124 TGAATGGACACGAAACCGCT 60.250 50.000 0.00 0.00 0.00 5.52
334 335 1.301479 GCGACTTTCTCCGTTGGGT 60.301 57.895 0.00 0.00 33.83 4.51
472 473 2.100031 CACGCTCGTAATGCTGGCA 61.100 57.895 0.00 0.00 0.00 4.92
494 495 1.304547 AGGGTGGAGTCTGAGACCG 60.305 63.158 9.33 0.00 32.18 4.79
566 572 1.540267 CAAAAAGATGCGGGTGGGTA 58.460 50.000 0.00 0.00 0.00 3.69
567 573 2.099405 CAAAAAGATGCGGGTGGGTAT 58.901 47.619 0.00 0.00 0.00 2.73
580 586 1.118965 TGGGTATGCCGGTGATCGAT 61.119 55.000 1.90 0.00 42.43 3.59
585 591 3.119101 GGTATGCCGGTGATCGATCTTAT 60.119 47.826 25.02 12.48 42.43 1.73
587 593 3.469008 TGCCGGTGATCGATCTTATTT 57.531 42.857 25.02 0.00 42.43 1.40
595 601 7.307219 CCGGTGATCGATCTTATTTAGGTTTTC 60.307 40.741 25.02 0.00 42.43 2.29
600 606 9.420551 GATCGATCTTATTTAGGTTTTCCGTAT 57.579 33.333 18.29 0.00 46.35 3.06
601 607 8.583810 TCGATCTTATTTAGGTTTTCCGTATG 57.416 34.615 0.00 0.00 46.35 2.39
603 609 8.485591 CGATCTTATTTAGGTTTTCCGTATGTC 58.514 37.037 0.00 0.00 46.35 3.06
604 610 9.543783 GATCTTATTTAGGTTTTCCGTATGTCT 57.456 33.333 0.00 0.00 46.35 3.41
628 643 0.733150 GTACCTGCTTTTGATCGGCC 59.267 55.000 0.00 0.00 0.00 6.13
640 655 1.416401 TGATCGGCCCTTATCAACTCC 59.584 52.381 0.00 0.00 0.00 3.85
671 687 0.108329 CTCGTGCTGGGTCCGTAAAT 60.108 55.000 0.00 0.00 0.00 1.40
784 822 9.638239 AAAAAGGTATGCATTACACTTGTATTG 57.362 29.630 3.54 6.84 35.88 1.90
785 823 7.938140 AAGGTATGCATTACACTTGTATTGT 57.062 32.000 3.54 0.00 35.48 2.71
786 824 9.456147 AAAGGTATGCATTACACTTGTATTGTA 57.544 29.630 3.54 8.21 35.48 2.41
787 825 9.627123 AAGGTATGCATTACACTTGTATTGTAT 57.373 29.630 3.54 14.91 39.11 2.29
788 826 9.056005 AGGTATGCATTACACTTGTATTGTATG 57.944 33.333 3.54 8.75 37.57 2.39
789 827 8.836413 GGTATGCATTACACTTGTATTGTATGT 58.164 33.333 3.54 4.20 37.57 2.29
790 828 9.650371 GTATGCATTACACTTGTATTGTATGTG 57.350 33.333 3.54 0.00 37.57 3.21
791 829 7.680442 TGCATTACACTTGTATTGTATGTGT 57.320 32.000 11.15 0.00 43.18 3.72
792 830 7.525759 TGCATTACACTTGTATTGTATGTGTG 58.474 34.615 11.15 0.00 41.23 3.82
793 831 7.174080 TGCATTACACTTGTATTGTATGTGTGT 59.826 33.333 11.15 0.00 41.23 3.72
794 832 7.692291 GCATTACACTTGTATTGTATGTGTGTC 59.308 37.037 11.15 0.00 41.23 3.67
795 833 7.661127 TTACACTTGTATTGTATGTGTGTCC 57.339 36.000 0.00 0.00 41.23 4.02
796 834 5.865085 ACACTTGTATTGTATGTGTGTCCT 58.135 37.500 0.00 0.00 39.90 3.85
797 835 6.296026 ACACTTGTATTGTATGTGTGTCCTT 58.704 36.000 0.00 0.00 39.90 3.36
798 836 6.204688 ACACTTGTATTGTATGTGTGTCCTTG 59.795 38.462 0.00 0.00 39.90 3.61
799 837 6.204688 CACTTGTATTGTATGTGTGTCCTTGT 59.795 38.462 0.00 0.00 0.00 3.16
800 838 6.770785 ACTTGTATTGTATGTGTGTCCTTGTT 59.229 34.615 0.00 0.00 0.00 2.83
801 839 6.552859 TGTATTGTATGTGTGTCCTTGTTG 57.447 37.500 0.00 0.00 0.00 3.33
802 840 6.292150 TGTATTGTATGTGTGTCCTTGTTGA 58.708 36.000 0.00 0.00 0.00 3.18
803 841 5.947228 ATTGTATGTGTGTCCTTGTTGAG 57.053 39.130 0.00 0.00 0.00 3.02
804 842 4.681074 TGTATGTGTGTCCTTGTTGAGA 57.319 40.909 0.00 0.00 0.00 3.27
805 843 4.377021 TGTATGTGTGTCCTTGTTGAGAC 58.623 43.478 0.00 0.00 0.00 3.36
806 844 1.934589 TGTGTGTCCTTGTTGAGACG 58.065 50.000 0.00 0.00 35.71 4.18
807 845 1.217882 GTGTGTCCTTGTTGAGACGG 58.782 55.000 0.00 0.00 35.71 4.79
808 846 0.105964 TGTGTCCTTGTTGAGACGGG 59.894 55.000 0.00 0.00 35.71 5.28
809 847 1.070786 TGTCCTTGTTGAGACGGGC 59.929 57.895 0.00 0.00 35.71 6.13
810 848 1.070786 GTCCTTGTTGAGACGGGCA 59.929 57.895 0.00 0.00 0.00 5.36
819 857 1.228154 GAGACGGGCAAACCACCTT 60.228 57.895 0.00 0.00 40.22 3.50
825 863 0.759060 GGGCAAACCACCTTGGAGTT 60.759 55.000 0.00 0.00 40.96 3.01
826 864 0.673985 GGCAAACCACCTTGGAGTTC 59.326 55.000 0.00 0.00 40.96 3.01
827 865 0.310854 GCAAACCACCTTGGAGTTCG 59.689 55.000 0.00 0.00 40.96 3.95
828 866 1.961793 CAAACCACCTTGGAGTTCGA 58.038 50.000 0.00 0.00 40.96 3.71
830 868 2.185004 AACCACCTTGGAGTTCGATG 57.815 50.000 0.00 0.00 40.96 3.84
831 869 0.321653 ACCACCTTGGAGTTCGATGC 60.322 55.000 0.00 0.00 40.96 3.91
832 870 0.321564 CCACCTTGGAGTTCGATGCA 60.322 55.000 0.00 0.00 40.96 3.96
834 872 1.879380 CACCTTGGAGTTCGATGCAAA 59.121 47.619 0.00 0.00 29.57 3.68
835 873 2.293122 CACCTTGGAGTTCGATGCAAAA 59.707 45.455 0.00 0.00 29.57 2.44
836 874 2.955660 ACCTTGGAGTTCGATGCAAAAA 59.044 40.909 0.00 0.00 29.57 1.94
837 875 3.004734 ACCTTGGAGTTCGATGCAAAAAG 59.995 43.478 0.00 0.00 29.57 2.27
839 877 4.470462 CTTGGAGTTCGATGCAAAAAGAG 58.530 43.478 0.00 0.00 29.57 2.85
841 879 4.133820 TGGAGTTCGATGCAAAAAGAGAA 58.866 39.130 0.00 0.00 0.00 2.87
842 880 4.578516 TGGAGTTCGATGCAAAAAGAGAAA 59.421 37.500 0.00 0.00 0.00 2.52
864 902 5.545063 AAAACCCACCTTGGAGTTATTTG 57.455 39.130 0.00 0.00 40.96 2.32
865 903 3.895704 ACCCACCTTGGAGTTATTTGT 57.104 42.857 0.00 0.00 40.96 2.83
866 904 5.327737 AACCCACCTTGGAGTTATTTGTA 57.672 39.130 0.00 0.00 40.96 2.41
867 905 5.530176 ACCCACCTTGGAGTTATTTGTAT 57.470 39.130 0.00 0.00 40.96 2.29
868 906 5.261216 ACCCACCTTGGAGTTATTTGTATG 58.739 41.667 0.00 0.00 40.96 2.39
869 907 5.222254 ACCCACCTTGGAGTTATTTGTATGT 60.222 40.000 0.00 0.00 40.96 2.29
870 908 5.357032 CCCACCTTGGAGTTATTTGTATGTC 59.643 44.000 0.00 0.00 40.96 3.06
871 909 6.180472 CCACCTTGGAGTTATTTGTATGTCT 58.820 40.000 0.00 0.00 40.96 3.41
872 910 6.316390 CCACCTTGGAGTTATTTGTATGTCTC 59.684 42.308 0.00 0.00 40.96 3.36
873 911 6.316390 CACCTTGGAGTTATTTGTATGTCTCC 59.684 42.308 0.00 0.00 41.00 3.71
876 914 6.867519 TGGAGTTATTTGTATGTCTCCTGA 57.132 37.500 9.81 0.00 41.14 3.86
888 926 1.748493 GTCTCCTGACTCCTGCTACAG 59.252 57.143 0.00 0.00 39.94 2.74
898 936 1.958579 TCCTGCTACAGTTACACGTGT 59.041 47.619 26.52 26.52 0.00 4.49
901 939 2.724690 CTGCTACAGTTACACGTGTGAC 59.275 50.000 30.11 30.11 35.10 3.67
902 940 2.359848 TGCTACAGTTACACGTGTGACT 59.640 45.455 33.14 33.14 44.32 3.41
903 941 3.565063 TGCTACAGTTACACGTGTGACTA 59.435 43.478 36.30 24.79 42.04 2.59
904 942 4.216902 TGCTACAGTTACACGTGTGACTAT 59.783 41.667 36.30 30.79 42.04 2.12
905 943 5.159209 GCTACAGTTACACGTGTGACTATT 58.841 41.667 36.30 28.74 42.04 1.73
932 970 9.945904 ATATGAATCAGATACGTAGACACTAGA 57.054 33.333 0.08 0.00 0.00 2.43
935 973 7.769507 TGAATCAGATACGTAGACACTAGAGTT 59.230 37.037 0.08 0.00 0.00 3.01
936 974 8.508883 AATCAGATACGTAGACACTAGAGTTT 57.491 34.615 0.08 0.00 0.00 2.66
937 975 7.918536 TCAGATACGTAGACACTAGAGTTTT 57.081 36.000 0.08 0.00 0.00 2.43
938 976 7.972527 TCAGATACGTAGACACTAGAGTTTTC 58.027 38.462 0.08 0.00 0.00 2.29
939 977 7.605309 TCAGATACGTAGACACTAGAGTTTTCA 59.395 37.037 0.08 0.00 0.00 2.69
940 978 8.399425 CAGATACGTAGACACTAGAGTTTTCAT 58.601 37.037 0.08 0.00 0.00 2.57
948 986 7.331791 AGACACTAGAGTTTTCATTATGGTCC 58.668 38.462 0.00 0.00 0.00 4.46
954 992 7.698163 AGAGTTTTCATTATGGTCCTCCTAT 57.302 36.000 0.00 0.00 34.23 2.57
956 994 7.570607 AGAGTTTTCATTATGGTCCTCCTATCT 59.429 37.037 0.00 0.00 34.23 1.98
1117 1249 4.914420 CTCCGCGCTAGCAGGACG 62.914 72.222 21.09 14.98 45.49 4.79
1398 1530 2.412112 CTACCGTAGACCTGGCGC 59.588 66.667 0.00 0.00 0.00 6.53
1522 1654 1.244019 GGGTCAGGTGCAACATCACC 61.244 60.000 3.64 6.36 42.78 4.02
1777 1909 0.318275 GGATCGACGACATGAGAGCC 60.318 60.000 0.00 0.00 31.80 4.70
1807 1939 3.968227 CAGGAATCTGCTGCACTTTGCA 61.968 50.000 0.00 0.12 41.85 4.08
1860 1992 3.333899 ATGGTGCTGCGATGGCTCA 62.334 57.895 0.15 0.00 40.82 4.26
1923 2055 1.758440 AAGCTGGTCTGCGAGGACAA 61.758 55.000 9.69 0.00 37.91 3.18
1932 2064 0.531974 TGCGAGGACAAACTGTGGAC 60.532 55.000 0.00 0.00 0.00 4.02
1945 2077 2.291843 GTGGACTCACATCGATGCG 58.708 57.895 25.11 16.32 43.13 4.73
2136 2268 2.132996 CCAAGCTTGCAACCCACCA 61.133 57.895 21.43 0.00 0.00 4.17
2342 2474 3.068165 CCTGACTCGTGATATTGCTACCA 59.932 47.826 0.00 0.00 0.00 3.25
2472 2604 2.202987 GCTCGGGTGCAGAGATGG 60.203 66.667 5.67 0.00 37.93 3.51
2478 2610 1.672881 CGGGTGCAGAGATGGATTTTC 59.327 52.381 0.00 0.00 0.00 2.29
2502 2634 5.107065 CGTGAAAACAATACCTTCTCACCTC 60.107 44.000 0.00 0.00 0.00 3.85
2504 2636 5.073144 TGAAAACAATACCTTCTCACCTCCT 59.927 40.000 0.00 0.00 0.00 3.69
2560 2793 1.967319 TTTGTCACACTCAAGGAGCC 58.033 50.000 0.00 0.00 32.04 4.70
2571 2804 0.807496 CAAGGAGCCTTGCTTAGCAC 59.193 55.000 15.66 0.00 45.38 4.40
2602 2835 3.882102 TGCAACAGCATATAGGGGATT 57.118 42.857 0.00 0.00 32.31 3.01
2603 2836 3.489355 TGCAACAGCATATAGGGGATTG 58.511 45.455 0.00 0.00 32.31 2.67
2604 2837 2.229784 GCAACAGCATATAGGGGATTGC 59.770 50.000 0.00 0.00 34.98 3.56
2605 2838 3.759581 CAACAGCATATAGGGGATTGCT 58.240 45.455 0.00 0.00 45.86 3.91
2606 2839 4.807303 GCAACAGCATATAGGGGATTGCTA 60.807 45.833 0.00 0.00 43.25 3.49
2607 2840 5.316167 CAACAGCATATAGGGGATTGCTAA 58.684 41.667 0.00 0.00 43.25 3.09
2608 2841 4.911390 ACAGCATATAGGGGATTGCTAAC 58.089 43.478 0.00 0.00 43.25 2.34
2609 2842 4.599241 ACAGCATATAGGGGATTGCTAACT 59.401 41.667 0.00 0.00 43.25 2.24
2610 2843 5.181748 CAGCATATAGGGGATTGCTAACTC 58.818 45.833 0.00 0.00 43.25 3.01
2611 2844 4.081420 AGCATATAGGGGATTGCTAACTCG 60.081 45.833 0.00 0.00 43.28 4.18
2612 2845 2.841442 ATAGGGGATTGCTAACTCGC 57.159 50.000 0.00 0.00 0.00 5.03
2613 2846 1.491668 TAGGGGATTGCTAACTCGCA 58.508 50.000 0.00 0.00 38.31 5.10
2614 2847 0.107654 AGGGGATTGCTAACTCGCAC 60.108 55.000 0.00 0.00 40.09 5.34
2615 2848 1.429148 GGGGATTGCTAACTCGCACG 61.429 60.000 0.00 0.00 40.09 5.34
2616 2849 1.348594 GGATTGCTAACTCGCACGC 59.651 57.895 0.00 0.00 40.09 5.34
2617 2850 1.013323 GATTGCTAACTCGCACGCG 60.013 57.895 3.53 3.53 40.09 6.01
2618 2851 2.932978 GATTGCTAACTCGCACGCGC 62.933 60.000 5.73 0.00 40.09 6.86
2619 2852 4.717629 TGCTAACTCGCACGCGCT 62.718 61.111 5.73 0.00 39.59 5.92
2620 2853 3.903207 GCTAACTCGCACGCGCTC 61.903 66.667 5.73 0.00 39.59 5.03
2621 2854 3.598562 CTAACTCGCACGCGCTCG 61.599 66.667 5.73 10.55 39.59 5.03
2635 2868 4.421479 CTCGTTGGAGCGCTCGGT 62.421 66.667 29.81 0.00 32.61 4.69
2636 2869 3.916392 CTCGTTGGAGCGCTCGGTT 62.916 63.158 29.81 0.00 32.61 4.44
2637 2870 3.041940 CGTTGGAGCGCTCGGTTT 61.042 61.111 29.81 0.00 0.00 3.27
2638 2871 2.861006 GTTGGAGCGCTCGGTTTC 59.139 61.111 29.81 16.67 0.00 2.78
2639 2872 2.736995 TTGGAGCGCTCGGTTTCG 60.737 61.111 29.81 0.00 37.82 3.46
2640 2873 4.735132 TGGAGCGCTCGGTTTCGG 62.735 66.667 29.81 0.00 36.95 4.30
2641 2874 4.430765 GGAGCGCTCGGTTTCGGA 62.431 66.667 29.81 0.00 36.95 4.55
2642 2875 3.179939 GAGCGCTCGGTTTCGGAC 61.180 66.667 23.61 0.00 36.95 4.79
2643 2876 3.909258 GAGCGCTCGGTTTCGGACA 62.909 63.158 23.61 0.00 36.95 4.02
2644 2877 3.479269 GCGCTCGGTTTCGGACAG 61.479 66.667 0.00 0.00 36.95 3.51
2645 2878 3.479269 CGCTCGGTTTCGGACAGC 61.479 66.667 0.00 0.00 36.95 4.40
2646 2879 2.048127 GCTCGGTTTCGGACAGCT 60.048 61.111 0.00 0.00 32.99 4.24
2647 2880 2.095252 GCTCGGTTTCGGACAGCTC 61.095 63.158 0.00 0.00 32.99 4.09
2648 2881 1.446272 CTCGGTTTCGGACAGCTCC 60.446 63.158 0.00 0.00 36.95 4.70
2649 2882 1.878656 CTCGGTTTCGGACAGCTCCT 61.879 60.000 0.00 0.00 33.79 3.69
2650 2883 1.738099 CGGTTTCGGACAGCTCCTG 60.738 63.158 0.00 0.00 37.52 3.86
2651 2884 1.671742 GGTTTCGGACAGCTCCTGA 59.328 57.895 0.00 0.00 35.18 3.86
2652 2885 0.250513 GGTTTCGGACAGCTCCTGAT 59.749 55.000 0.00 0.00 35.18 2.90
2653 2886 1.339151 GGTTTCGGACAGCTCCTGATT 60.339 52.381 0.00 0.00 35.18 2.57
2654 2887 2.427506 GTTTCGGACAGCTCCTGATTT 58.572 47.619 0.00 0.00 35.18 2.17
2655 2888 2.099141 TTCGGACAGCTCCTGATTTG 57.901 50.000 0.00 0.00 35.18 2.32
2656 2889 0.250234 TCGGACAGCTCCTGATTTGG 59.750 55.000 0.00 0.00 35.18 3.28
2657 2890 0.250234 CGGACAGCTCCTGATTTGGA 59.750 55.000 0.00 0.00 35.18 3.53
2658 2891 1.339055 CGGACAGCTCCTGATTTGGAA 60.339 52.381 0.00 0.00 35.43 3.53
2659 2892 2.795329 GGACAGCTCCTGATTTGGAAA 58.205 47.619 0.00 0.00 35.43 3.13
2660 2893 2.751806 GGACAGCTCCTGATTTGGAAAG 59.248 50.000 0.00 0.00 35.43 2.62
2661 2894 3.416156 GACAGCTCCTGATTTGGAAAGT 58.584 45.455 0.00 0.00 35.43 2.66
2662 2895 4.565652 GGACAGCTCCTGATTTGGAAAGTA 60.566 45.833 0.00 0.00 35.43 2.24
2663 2896 4.583871 ACAGCTCCTGATTTGGAAAGTAG 58.416 43.478 0.00 0.00 35.43 2.57
2664 2897 3.944015 CAGCTCCTGATTTGGAAAGTAGG 59.056 47.826 0.00 0.00 35.43 3.18
2665 2898 2.685388 GCTCCTGATTTGGAAAGTAGGC 59.315 50.000 0.00 0.00 35.43 3.93
2666 2899 3.873801 GCTCCTGATTTGGAAAGTAGGCA 60.874 47.826 0.00 0.00 35.43 4.75
2667 2900 3.944015 CTCCTGATTTGGAAAGTAGGCAG 59.056 47.826 0.00 0.00 35.43 4.85
2668 2901 3.330701 TCCTGATTTGGAAAGTAGGCAGT 59.669 43.478 0.00 0.00 32.39 4.40
2669 2902 4.082125 CCTGATTTGGAAAGTAGGCAGTT 58.918 43.478 0.00 0.00 0.00 3.16
2670 2903 4.082571 CCTGATTTGGAAAGTAGGCAGTTG 60.083 45.833 0.00 0.00 0.00 3.16
2671 2904 4.469657 TGATTTGGAAAGTAGGCAGTTGT 58.530 39.130 0.00 0.00 0.00 3.32
2672 2905 4.892934 TGATTTGGAAAGTAGGCAGTTGTT 59.107 37.500 0.00 0.00 0.00 2.83
2673 2906 5.362430 TGATTTGGAAAGTAGGCAGTTGTTT 59.638 36.000 0.00 0.00 0.00 2.83
2674 2907 5.669164 TTTGGAAAGTAGGCAGTTGTTTT 57.331 34.783 0.00 0.00 0.00 2.43
2675 2908 4.911514 TGGAAAGTAGGCAGTTGTTTTC 57.088 40.909 0.00 0.00 0.00 2.29
2676 2909 4.532834 TGGAAAGTAGGCAGTTGTTTTCT 58.467 39.130 0.00 0.00 0.00 2.52
2677 2910 4.953579 TGGAAAGTAGGCAGTTGTTTTCTT 59.046 37.500 0.00 0.00 0.00 2.52
2678 2911 5.420739 TGGAAAGTAGGCAGTTGTTTTCTTT 59.579 36.000 0.00 0.00 0.00 2.52
2679 2912 5.748630 GGAAAGTAGGCAGTTGTTTTCTTTG 59.251 40.000 0.00 0.00 0.00 2.77
2680 2913 6.405397 GGAAAGTAGGCAGTTGTTTTCTTTGA 60.405 38.462 0.00 0.00 0.00 2.69
2681 2914 5.757850 AGTAGGCAGTTGTTTTCTTTGAG 57.242 39.130 0.00 0.00 0.00 3.02
2682 2915 4.580580 AGTAGGCAGTTGTTTTCTTTGAGG 59.419 41.667 0.00 0.00 0.00 3.86
2683 2916 3.631250 AGGCAGTTGTTTTCTTTGAGGA 58.369 40.909 0.00 0.00 0.00 3.71
2684 2917 4.218312 AGGCAGTTGTTTTCTTTGAGGAT 58.782 39.130 0.00 0.00 0.00 3.24
2685 2918 4.651045 AGGCAGTTGTTTTCTTTGAGGATT 59.349 37.500 0.00 0.00 0.00 3.01
2686 2919 5.833131 AGGCAGTTGTTTTCTTTGAGGATTA 59.167 36.000 0.00 0.00 0.00 1.75
2687 2920 6.015940 AGGCAGTTGTTTTCTTTGAGGATTAG 60.016 38.462 0.00 0.00 0.00 1.73
2688 2921 6.152379 GCAGTTGTTTTCTTTGAGGATTAGG 58.848 40.000 0.00 0.00 0.00 2.69
2689 2922 6.681777 CAGTTGTTTTCTTTGAGGATTAGGG 58.318 40.000 0.00 0.00 0.00 3.53
2690 2923 5.775195 AGTTGTTTTCTTTGAGGATTAGGGG 59.225 40.000 0.00 0.00 0.00 4.79
2691 2924 5.592587 TGTTTTCTTTGAGGATTAGGGGA 57.407 39.130 0.00 0.00 0.00 4.81
2692 2925 6.152638 TGTTTTCTTTGAGGATTAGGGGAT 57.847 37.500 0.00 0.00 0.00 3.85
2693 2926 6.561294 TGTTTTCTTTGAGGATTAGGGGATT 58.439 36.000 0.00 0.00 0.00 3.01
2694 2927 7.704727 TGTTTTCTTTGAGGATTAGGGGATTA 58.295 34.615 0.00 0.00 0.00 1.75
2695 2928 8.174085 TGTTTTCTTTGAGGATTAGGGGATTAA 58.826 33.333 0.00 0.00 0.00 1.40
2696 2929 9.201989 GTTTTCTTTGAGGATTAGGGGATTAAT 57.798 33.333 0.00 0.00 0.00 1.40
2697 2930 9.782900 TTTTCTTTGAGGATTAGGGGATTAATT 57.217 29.630 0.00 0.00 0.00 1.40
2701 2934 9.301897 CTTTGAGGATTAGGGGATTAATTAAGG 57.698 37.037 3.94 0.00 0.00 2.69
2702 2935 7.964730 TGAGGATTAGGGGATTAATTAAGGT 57.035 36.000 3.94 0.00 0.00 3.50
2703 2936 7.755618 TGAGGATTAGGGGATTAATTAAGGTG 58.244 38.462 3.94 0.00 0.00 4.00
2704 2937 7.103745 AGGATTAGGGGATTAATTAAGGTGG 57.896 40.000 3.94 0.00 0.00 4.61
2705 2938 6.046762 AGGATTAGGGGATTAATTAAGGTGGG 59.953 42.308 3.94 0.00 0.00 4.61
2706 2939 3.612795 AGGGGATTAATTAAGGTGGGC 57.387 47.619 3.94 0.00 0.00 5.36
2707 2940 2.179204 AGGGGATTAATTAAGGTGGGCC 59.821 50.000 3.94 0.00 0.00 5.80
2708 2941 2.605257 GGGATTAATTAAGGTGGGCCC 58.395 52.381 17.59 17.59 34.57 5.80
2709 2942 2.605257 GGATTAATTAAGGTGGGCCCC 58.395 52.381 22.27 10.91 34.57 5.80
2710 2943 2.605257 GATTAATTAAGGTGGGCCCCC 58.395 52.381 22.27 20.35 34.57 5.40
2711 2944 1.701422 TTAATTAAGGTGGGCCCCCT 58.299 50.000 22.27 22.45 36.94 4.79
2712 2945 0.930726 TAATTAAGGTGGGCCCCCTG 59.069 55.000 27.15 0.00 36.94 4.45
2713 2946 0.853586 AATTAAGGTGGGCCCCCTGA 60.854 55.000 27.15 19.70 36.94 3.86
2714 2947 0.853586 ATTAAGGTGGGCCCCCTGAA 60.854 55.000 27.15 25.65 36.94 3.02
2715 2948 1.074895 TTAAGGTGGGCCCCCTGAAA 61.075 55.000 27.15 21.42 36.94 2.69
2716 2949 1.074895 TAAGGTGGGCCCCCTGAAAA 61.075 55.000 27.15 13.66 36.94 2.29
2717 2950 1.750087 AAGGTGGGCCCCCTGAAAAT 61.750 55.000 27.15 12.30 36.94 1.82
2718 2951 1.685765 GGTGGGCCCCCTGAAAATC 60.686 63.158 22.27 0.00 36.94 2.17
2719 2952 1.078347 GTGGGCCCCCTGAAAATCA 59.922 57.895 22.27 0.00 36.94 2.57
2720 2953 0.972471 GTGGGCCCCCTGAAAATCAG 60.972 60.000 22.27 0.32 43.91 2.90
2740 2973 2.776659 GGGGGCGATTAGTGTTGAC 58.223 57.895 0.00 0.00 0.00 3.18
2741 2974 0.252197 GGGGGCGATTAGTGTTGACT 59.748 55.000 0.00 0.00 36.07 3.41
2742 2975 1.653151 GGGGCGATTAGTGTTGACTC 58.347 55.000 0.00 0.00 33.21 3.36
2743 2976 1.207329 GGGGCGATTAGTGTTGACTCT 59.793 52.381 0.00 0.00 33.21 3.24
2744 2977 2.271800 GGGCGATTAGTGTTGACTCTG 58.728 52.381 0.00 0.00 33.21 3.35
2745 2978 2.271800 GGCGATTAGTGTTGACTCTGG 58.728 52.381 0.00 0.00 33.21 3.86
2746 2979 2.271800 GCGATTAGTGTTGACTCTGGG 58.728 52.381 0.00 0.00 33.21 4.45
2747 2980 2.353803 GCGATTAGTGTTGACTCTGGGT 60.354 50.000 0.00 0.00 33.21 4.51
2748 2981 3.254060 CGATTAGTGTTGACTCTGGGTG 58.746 50.000 0.00 0.00 33.21 4.61
2749 2982 3.600388 GATTAGTGTTGACTCTGGGTGG 58.400 50.000 0.00 0.00 33.21 4.61
2750 2983 1.348064 TAGTGTTGACTCTGGGTGGG 58.652 55.000 0.00 0.00 33.21 4.61
2751 2984 1.600916 GTGTTGACTCTGGGTGGGC 60.601 63.158 0.00 0.00 0.00 5.36
2752 2985 2.034221 GTTGACTCTGGGTGGGCC 59.966 66.667 0.00 0.00 0.00 5.80
2753 2986 2.121963 TTGACTCTGGGTGGGCCT 60.122 61.111 4.53 0.00 34.45 5.19
2754 2987 1.774217 TTGACTCTGGGTGGGCCTT 60.774 57.895 4.53 0.00 34.45 4.35
2755 2988 2.067932 TTGACTCTGGGTGGGCCTTG 62.068 60.000 4.53 0.00 34.45 3.61
2756 2989 2.121963 ACTCTGGGTGGGCCTTGA 60.122 61.111 4.53 0.00 34.45 3.02
2757 2990 2.352805 CTCTGGGTGGGCCTTGAC 59.647 66.667 4.53 0.00 34.45 3.18
2758 2991 3.612247 CTCTGGGTGGGCCTTGACG 62.612 68.421 4.53 0.00 34.45 4.35
2759 2992 3.636231 CTGGGTGGGCCTTGACGA 61.636 66.667 4.53 0.00 34.45 4.20
2760 2993 2.933287 TGGGTGGGCCTTGACGAT 60.933 61.111 4.53 0.00 34.45 3.73
2761 2994 2.438434 GGGTGGGCCTTGACGATG 60.438 66.667 4.53 0.00 34.45 3.84
2762 2995 2.438434 GGTGGGCCTTGACGATGG 60.438 66.667 4.53 0.00 0.00 3.51
2763 2996 2.351276 GTGGGCCTTGACGATGGT 59.649 61.111 4.53 0.00 0.00 3.55
2764 2997 2.040544 GTGGGCCTTGACGATGGTG 61.041 63.158 4.53 0.00 0.00 4.17
2765 2998 3.134127 GGGCCTTGACGATGGTGC 61.134 66.667 0.84 0.00 0.00 5.01
2766 2999 3.134127 GGCCTTGACGATGGTGCC 61.134 66.667 0.00 0.00 0.00 5.01
2767 3000 2.045926 GCCTTGACGATGGTGCCT 60.046 61.111 0.00 0.00 0.00 4.75
2768 3001 1.675641 GCCTTGACGATGGTGCCTT 60.676 57.895 0.00 0.00 0.00 4.35
2769 3002 1.648467 GCCTTGACGATGGTGCCTTC 61.648 60.000 0.00 0.00 0.00 3.46
2770 3003 1.361668 CCTTGACGATGGTGCCTTCG 61.362 60.000 20.25 20.25 45.22 3.79
2774 3007 3.168271 CGATGGTGCCTTCGTGTG 58.832 61.111 15.56 0.00 38.33 3.82
2775 3008 2.390599 CGATGGTGCCTTCGTGTGG 61.391 63.158 15.56 0.00 38.33 4.17
2776 3009 1.003839 GATGGTGCCTTCGTGTGGA 60.004 57.895 0.00 0.00 0.00 4.02
2777 3010 0.392998 GATGGTGCCTTCGTGTGGAT 60.393 55.000 0.00 0.00 0.00 3.41
2778 3011 0.677731 ATGGTGCCTTCGTGTGGATG 60.678 55.000 0.00 0.00 0.00 3.51
2779 3012 2.690778 GGTGCCTTCGTGTGGATGC 61.691 63.158 0.00 0.00 0.00 3.91
2780 3013 2.741985 TGCCTTCGTGTGGATGCG 60.742 61.111 0.00 0.00 0.00 4.73
2781 3014 4.166011 GCCTTCGTGTGGATGCGC 62.166 66.667 0.00 0.00 0.00 6.09
2782 3015 2.741985 CCTTCGTGTGGATGCGCA 60.742 61.111 14.96 14.96 0.00 6.09
2783 3016 2.476051 CTTCGTGTGGATGCGCAC 59.524 61.111 14.90 19.80 0.00 5.34
2784 3017 2.280457 TTCGTGTGGATGCGCACA 60.280 55.556 27.21 3.79 35.51 4.57
2785 3018 1.840630 CTTCGTGTGGATGCGCACAA 61.841 55.000 27.21 19.01 35.51 3.33
2786 3019 2.111932 TTCGTGTGGATGCGCACAAC 62.112 55.000 27.21 12.40 35.51 3.32
2787 3020 2.891221 CGTGTGGATGCGCACAACA 61.891 57.895 27.21 15.21 35.51 3.33
2788 3021 1.370414 GTGTGGATGCGCACAACAC 60.370 57.895 26.43 26.43 37.90 3.32
2789 3022 2.255252 GTGGATGCGCACAACACC 59.745 61.111 22.93 16.96 33.83 4.16
2790 3023 2.203266 TGGATGCGCACAACACCA 60.203 55.556 14.90 14.79 0.00 4.17
2791 3024 1.603171 TGGATGCGCACAACACCAT 60.603 52.632 14.90 0.00 0.00 3.55
2792 3025 1.137404 GGATGCGCACAACACCATC 59.863 57.895 14.90 2.92 34.73 3.51
2793 3026 1.137404 GATGCGCACAACACCATCC 59.863 57.895 14.90 0.00 0.00 3.51
2794 3027 2.270297 GATGCGCACAACACCATCCC 62.270 60.000 14.90 0.00 0.00 3.85
2795 3028 2.672996 GCGCACAACACCATCCCT 60.673 61.111 0.30 0.00 0.00 4.20
2796 3029 2.268076 GCGCACAACACCATCCCTT 61.268 57.895 0.30 0.00 0.00 3.95
2797 3030 1.580942 CGCACAACACCATCCCTTG 59.419 57.895 0.00 0.00 0.00 3.61
2798 3031 1.172180 CGCACAACACCATCCCTTGT 61.172 55.000 0.00 0.00 0.00 3.16
2799 3032 1.039856 GCACAACACCATCCCTTGTT 58.960 50.000 0.00 0.00 36.35 2.83
2802 3035 0.318120 CAACACCATCCCTTGTTGGC 59.682 55.000 6.57 0.00 45.89 4.52
2803 3036 0.188342 AACACCATCCCTTGTTGGCT 59.812 50.000 0.00 0.00 34.61 4.75
2804 3037 0.540365 ACACCATCCCTTGTTGGCTG 60.540 55.000 0.00 0.00 35.13 4.85
2805 3038 1.077265 ACCATCCCTTGTTGGCTGG 59.923 57.895 0.00 0.00 40.73 4.85
2806 3039 1.077265 CCATCCCTTGTTGGCTGGT 59.923 57.895 0.00 0.00 34.36 4.00
2807 3040 0.542702 CCATCCCTTGTTGGCTGGTT 60.543 55.000 0.00 0.00 34.36 3.67
2808 3041 0.604578 CATCCCTTGTTGGCTGGTTG 59.395 55.000 0.00 0.00 0.00 3.77
2809 3042 0.188342 ATCCCTTGTTGGCTGGTTGT 59.812 50.000 0.00 0.00 0.00 3.32
2810 3043 0.467290 TCCCTTGTTGGCTGGTTGTC 60.467 55.000 0.00 0.00 0.00 3.18
2811 3044 0.754957 CCCTTGTTGGCTGGTTGTCA 60.755 55.000 0.00 0.00 0.00 3.58
2812 3045 0.385390 CCTTGTTGGCTGGTTGTCAC 59.615 55.000 0.00 0.00 0.00 3.67
2813 3046 1.102154 CTTGTTGGCTGGTTGTCACA 58.898 50.000 0.00 0.00 0.00 3.58
2814 3047 0.814457 TTGTTGGCTGGTTGTCACAC 59.186 50.000 0.00 0.00 0.00 3.82
2815 3048 1.355210 GTTGGCTGGTTGTCACACG 59.645 57.895 0.00 0.00 0.00 4.49
2816 3049 1.078072 TTGGCTGGTTGTCACACGT 60.078 52.632 0.00 0.00 0.00 4.49
2817 3050 1.372838 TTGGCTGGTTGTCACACGTG 61.373 55.000 15.48 15.48 0.00 4.49
2818 3051 2.542907 GGCTGGTTGTCACACGTGG 61.543 63.158 21.57 9.11 0.00 4.94
2819 3052 1.817941 GCTGGTTGTCACACGTGGT 60.818 57.895 21.57 2.37 0.00 4.16
2820 3053 1.373590 GCTGGTTGTCACACGTGGTT 61.374 55.000 21.57 0.00 0.00 3.67
2821 3054 0.376852 CTGGTTGTCACACGTGGTTG 59.623 55.000 21.57 10.28 0.00 3.77
2822 3055 1.027255 TGGTTGTCACACGTGGTTGG 61.027 55.000 21.57 6.48 0.00 3.77
2823 3056 1.063488 GTTGTCACACGTGGTTGGC 59.937 57.895 21.57 12.21 0.00 4.52
2824 3057 2.115911 TTGTCACACGTGGTTGGCC 61.116 57.895 21.57 0.00 0.00 5.36
2825 3058 3.284449 GTCACACGTGGTTGGCCC 61.284 66.667 21.57 0.00 0.00 5.80
2826 3059 3.484806 TCACACGTGGTTGGCCCT 61.485 61.111 21.57 0.00 0.00 5.19
2827 3060 3.286751 CACACGTGGTTGGCCCTG 61.287 66.667 21.57 2.02 0.00 4.45
2838 3071 2.442830 GGCCCTGCCTGGAAATCC 60.443 66.667 0.00 0.00 46.69 3.01
2839 3072 2.685999 GCCCTGCCTGGAAATCCT 59.314 61.111 0.00 0.00 38.35 3.24
2840 3073 1.755783 GCCCTGCCTGGAAATCCTG 60.756 63.158 0.00 0.02 38.35 3.86
2841 3074 1.693640 CCCTGCCTGGAAATCCTGT 59.306 57.895 0.00 0.00 38.35 4.00
2842 3075 0.040204 CCCTGCCTGGAAATCCTGTT 59.960 55.000 0.00 0.00 38.35 3.16
2843 3076 1.550869 CCCTGCCTGGAAATCCTGTTT 60.551 52.381 0.00 0.00 38.35 2.83
2844 3077 2.250924 CCTGCCTGGAAATCCTGTTTT 58.749 47.619 0.00 0.00 38.35 2.43
2845 3078 2.028748 CCTGCCTGGAAATCCTGTTTTG 60.029 50.000 0.00 0.00 38.35 2.44
2846 3079 1.344114 TGCCTGGAAATCCTGTTTTGC 59.656 47.619 0.00 0.50 36.82 3.68
2847 3080 1.338105 GCCTGGAAATCCTGTTTTGCC 60.338 52.381 0.00 0.00 36.82 4.52
2848 3081 2.250924 CCTGGAAATCCTGTTTTGCCT 58.749 47.619 0.44 0.00 36.82 4.75
2849 3082 2.634453 CCTGGAAATCCTGTTTTGCCTT 59.366 45.455 0.44 0.00 36.82 4.35
2850 3083 3.555586 CCTGGAAATCCTGTTTTGCCTTG 60.556 47.826 0.44 0.00 36.82 3.61
2851 3084 3.037549 TGGAAATCCTGTTTTGCCTTGT 58.962 40.909 0.44 0.00 36.82 3.16
2852 3085 3.181467 TGGAAATCCTGTTTTGCCTTGTG 60.181 43.478 0.44 0.00 36.82 3.33
2853 3086 2.531522 AATCCTGTTTTGCCTTGTGC 57.468 45.000 0.00 0.00 41.77 4.57
2854 3087 0.314935 ATCCTGTTTTGCCTTGTGCG 59.685 50.000 0.00 0.00 45.60 5.34
2855 3088 1.950630 CCTGTTTTGCCTTGTGCGC 60.951 57.895 0.00 0.00 45.60 6.09
2856 3089 1.066257 CTGTTTTGCCTTGTGCGCT 59.934 52.632 9.73 0.00 45.60 5.92
2857 3090 1.210545 CTGTTTTGCCTTGTGCGCTG 61.211 55.000 9.73 0.00 45.60 5.18
2858 3091 1.950630 GTTTTGCCTTGTGCGCTGG 60.951 57.895 9.73 6.96 45.60 4.85
2859 3092 2.422231 TTTTGCCTTGTGCGCTGGT 61.422 52.632 9.73 0.00 45.60 4.00
2860 3093 1.954362 TTTTGCCTTGTGCGCTGGTT 61.954 50.000 9.73 0.00 45.60 3.67
2861 3094 2.348605 TTTGCCTTGTGCGCTGGTTC 62.349 55.000 9.73 0.00 45.60 3.62
2862 3095 4.389576 GCCTTGTGCGCTGGTTCG 62.390 66.667 9.73 0.00 0.00 3.95
2863 3096 2.664851 CCTTGTGCGCTGGTTCGA 60.665 61.111 9.73 0.00 0.00 3.71
2864 3097 2.250939 CCTTGTGCGCTGGTTCGAA 61.251 57.895 9.73 0.00 0.00 3.71
2865 3098 1.577328 CCTTGTGCGCTGGTTCGAAT 61.577 55.000 9.73 0.00 0.00 3.34
2866 3099 0.179215 CTTGTGCGCTGGTTCGAATC 60.179 55.000 9.73 0.00 0.00 2.52
2867 3100 1.896339 TTGTGCGCTGGTTCGAATCG 61.896 55.000 9.73 0.00 0.00 3.34
2868 3101 2.092291 GTGCGCTGGTTCGAATCGA 61.092 57.895 9.73 0.00 0.00 3.59
2869 3102 1.805539 TGCGCTGGTTCGAATCGAG 60.806 57.895 9.73 2.28 37.14 4.04
2870 3103 1.805945 GCGCTGGTTCGAATCGAGT 60.806 57.895 5.24 0.00 37.14 4.18
2871 3104 1.991430 CGCTGGTTCGAATCGAGTG 59.009 57.895 5.24 4.17 37.14 3.51
2872 3105 1.710339 GCTGGTTCGAATCGAGTGC 59.290 57.895 5.24 5.58 37.14 4.40
2873 3106 0.737715 GCTGGTTCGAATCGAGTGCT 60.738 55.000 5.24 0.00 37.14 4.40
2874 3107 0.994995 CTGGTTCGAATCGAGTGCTG 59.005 55.000 5.24 0.00 37.14 4.41
2875 3108 0.389817 TGGTTCGAATCGAGTGCTGG 60.390 55.000 5.24 0.00 37.14 4.85
2876 3109 0.108804 GGTTCGAATCGAGTGCTGGA 60.109 55.000 5.24 0.00 37.14 3.86
2877 3110 1.272781 GTTCGAATCGAGTGCTGGAG 58.727 55.000 5.24 0.00 37.14 3.86
2878 3111 0.458543 TTCGAATCGAGTGCTGGAGC 60.459 55.000 5.24 0.00 37.14 4.70
2879 3112 2.226896 CGAATCGAGTGCTGGAGCG 61.227 63.158 0.00 0.00 45.83 5.03
2880 3113 1.880340 GAATCGAGTGCTGGAGCGG 60.880 63.158 0.00 0.00 45.83 5.52
2881 3114 4.521062 ATCGAGTGCTGGAGCGGC 62.521 66.667 0.00 0.00 45.83 6.53
2895 3128 3.323136 CGGCCGATCGCGAAAGAG 61.323 66.667 24.07 3.37 40.82 2.85
2896 3129 2.202756 GGCCGATCGCGAAAGAGT 60.203 61.111 15.24 0.00 40.82 3.24
2897 3130 1.065273 GGCCGATCGCGAAAGAGTA 59.935 57.895 15.24 0.00 40.82 2.59
2898 3131 0.526954 GGCCGATCGCGAAAGAGTAA 60.527 55.000 15.24 0.00 40.82 2.24
2899 3132 1.274596 GCCGATCGCGAAAGAGTAAA 58.725 50.000 15.24 0.00 40.82 2.01
2900 3133 1.859080 GCCGATCGCGAAAGAGTAAAT 59.141 47.619 15.24 0.00 40.82 1.40
2901 3134 2.097347 GCCGATCGCGAAAGAGTAAATC 60.097 50.000 15.24 0.95 40.82 2.17
2902 3135 2.471743 CCGATCGCGAAAGAGTAAATCC 59.528 50.000 15.24 0.00 40.82 3.01
2903 3136 2.151360 CGATCGCGAAAGAGTAAATCCG 59.849 50.000 15.24 0.00 40.82 4.18
2953 3186 2.954753 GCACACAAGACGCTTCCCG 61.955 63.158 0.00 0.00 44.21 5.14
2962 3196 0.175073 GACGCTTCCCGGACACTATT 59.825 55.000 0.73 0.00 42.52 1.73
3021 3256 4.452825 TCAACACAAAGACACCGGATTTA 58.547 39.130 9.46 0.00 0.00 1.40
3022 3257 4.273969 TCAACACAAAGACACCGGATTTAC 59.726 41.667 9.46 0.00 0.00 2.01
3023 3258 2.803956 ACACAAAGACACCGGATTTACG 59.196 45.455 9.46 1.12 0.00 3.18
3024 3259 2.803956 CACAAAGACACCGGATTTACGT 59.196 45.455 9.46 0.00 0.00 3.57
3026 3261 2.088950 AAGACACCGGATTTACGTGG 57.911 50.000 9.46 0.00 0.00 4.94
3027 3262 1.259609 AGACACCGGATTTACGTGGA 58.740 50.000 9.46 0.00 0.00 4.02
3028 3263 1.067354 AGACACCGGATTTACGTGGAC 60.067 52.381 9.46 0.00 0.00 4.02
3029 3264 0.037046 ACACCGGATTTACGTGGACC 60.037 55.000 9.46 0.00 0.00 4.46
3031 3266 1.153309 CCGGATTTACGTGGACCCC 60.153 63.158 0.00 0.00 0.00 4.95
3032 3267 1.153309 CGGATTTACGTGGACCCCC 60.153 63.158 0.00 0.00 0.00 5.40
3072 3308 1.501337 GGGGAAAACCACGTGTCGAC 61.501 60.000 15.65 9.11 42.91 4.20
3156 3396 6.252967 AGCACTAGAAGATCTCATACATCG 57.747 41.667 0.00 0.00 0.00 3.84
3258 3499 3.468007 CGCAGCTTCAAGGAGACG 58.532 61.111 0.00 0.00 0.00 4.18
3396 3640 3.055675 ACCGATTTTCGTCACCCTTGATA 60.056 43.478 0.00 0.00 38.40 2.15
3530 3774 4.405358 CCTAAAAGGCTTCAAATGGGCATA 59.595 41.667 0.00 0.00 0.00 3.14
3563 3807 5.782331 TCCTACATGAGAAGGATATCCCAAG 59.218 44.000 18.56 8.54 36.97 3.61
3576 3822 0.623723 TCCCAAGAAATTCCCCCTCG 59.376 55.000 0.00 0.00 0.00 4.63
3616 3863 2.124570 ATGCCCGCTACCTTGCAG 60.125 61.111 0.00 0.00 37.12 4.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
129 130 1.840141 GCTACGACAAATTCATTGCGC 59.160 47.619 0.00 0.00 43.13 6.09
133 134 2.014128 CGGGGCTACGACAAATTCATT 58.986 47.619 0.00 0.00 35.47 2.57
165 166 1.668751 ACGTGTGCAATTTTCGTCTGT 59.331 42.857 0.00 0.00 0.00 3.41
166 167 2.298300 GACGTGTGCAATTTTCGTCTG 58.702 47.619 16.90 0.00 44.52 3.51
292 293 1.852067 GCAGCGGTTTCGTGTCCATT 61.852 55.000 0.00 0.00 38.89 3.16
334 335 1.550524 AGCTGGCACATCGACTTCTAA 59.449 47.619 0.00 0.00 38.20 2.10
472 473 1.304547 CTCAGACTCCACCCTCCGT 60.305 63.158 0.00 0.00 0.00 4.69
525 526 3.738429 CTGCCGGCGATGACCATCA 62.738 63.158 23.90 0.00 37.69 3.07
566 572 3.685139 AATAAGATCGATCACCGGCAT 57.315 42.857 26.47 7.68 39.14 4.40
567 573 3.469008 AAATAAGATCGATCACCGGCA 57.531 42.857 26.47 5.74 39.14 5.69
585 591 6.014327 ACACCTAGACATACGGAAAACCTAAA 60.014 38.462 0.00 0.00 0.00 1.85
587 593 5.018809 ACACCTAGACATACGGAAAACCTA 58.981 41.667 0.00 0.00 0.00 3.08
595 601 2.034305 GCAGGTACACCTAGACATACGG 59.966 54.545 0.00 0.00 46.65 4.02
600 606 3.644265 TCAAAAGCAGGTACACCTAGACA 59.356 43.478 0.00 0.00 46.65 3.41
601 607 4.267349 TCAAAAGCAGGTACACCTAGAC 57.733 45.455 0.00 0.00 46.65 2.59
603 609 3.865745 CGATCAAAAGCAGGTACACCTAG 59.134 47.826 0.00 0.00 46.65 3.02
604 610 3.369052 CCGATCAAAAGCAGGTACACCTA 60.369 47.826 0.00 0.00 46.65 3.08
628 643 1.687123 ACCGATCGGGAGTTGATAAGG 59.313 52.381 35.87 8.29 39.97 2.69
691 707 1.068472 CCGTCTCGTATACCATCTGCC 60.068 57.143 0.00 0.00 0.00 4.85
763 801 8.836413 ACATACAATACAAGTGTAATGCATACC 58.164 33.333 0.00 0.00 35.41 2.73
764 802 9.650371 CACATACAATACAAGTGTAATGCATAC 57.350 33.333 0.00 0.00 35.41 2.39
765 803 9.389755 ACACATACAATACAAGTGTAATGCATA 57.610 29.630 0.00 0.00 41.21 3.14
766 804 8.183536 CACACATACAATACAAGTGTAATGCAT 58.816 33.333 6.46 0.00 41.08 3.96
768 806 7.526608 ACACACATACAATACAAGTGTAATGC 58.473 34.615 6.46 0.00 41.08 3.56
769 807 8.175069 GGACACACATACAATACAAGTGTAATG 58.825 37.037 5.21 5.21 41.08 1.90
770 808 8.100791 AGGACACACATACAATACAAGTGTAAT 58.899 33.333 0.00 0.00 41.08 1.89
771 809 7.446769 AGGACACACATACAATACAAGTGTAA 58.553 34.615 0.00 0.00 41.08 2.41
772 810 6.999950 AGGACACACATACAATACAAGTGTA 58.000 36.000 0.00 0.00 41.08 2.90
773 811 5.865085 AGGACACACATACAATACAAGTGT 58.135 37.500 0.00 0.00 43.56 3.55
774 812 6.204688 ACAAGGACACACATACAATACAAGTG 59.795 38.462 0.00 0.00 36.34 3.16
775 813 6.296026 ACAAGGACACACATACAATACAAGT 58.704 36.000 0.00 0.00 0.00 3.16
777 815 6.768381 TCAACAAGGACACACATACAATACAA 59.232 34.615 0.00 0.00 0.00 2.41
779 817 6.649141 TCTCAACAAGGACACACATACAATAC 59.351 38.462 0.00 0.00 0.00 1.89
780 818 6.649141 GTCTCAACAAGGACACACATACAATA 59.351 38.462 0.00 0.00 33.19 1.90
781 819 5.470098 GTCTCAACAAGGACACACATACAAT 59.530 40.000 0.00 0.00 33.19 2.71
782 820 4.814234 GTCTCAACAAGGACACACATACAA 59.186 41.667 0.00 0.00 33.19 2.41
783 821 4.377021 GTCTCAACAAGGACACACATACA 58.623 43.478 0.00 0.00 33.19 2.29
784 822 3.428870 CGTCTCAACAAGGACACACATAC 59.571 47.826 0.00 0.00 33.19 2.39
785 823 3.554129 CCGTCTCAACAAGGACACACATA 60.554 47.826 0.00 0.00 33.19 2.29
786 824 2.483876 CGTCTCAACAAGGACACACAT 58.516 47.619 0.00 0.00 33.19 3.21
787 825 1.472552 CCGTCTCAACAAGGACACACA 60.473 52.381 0.00 0.00 33.19 3.72
788 826 1.217882 CCGTCTCAACAAGGACACAC 58.782 55.000 0.00 0.00 33.19 3.82
789 827 0.105964 CCCGTCTCAACAAGGACACA 59.894 55.000 0.00 0.00 33.19 3.72
790 828 1.228657 GCCCGTCTCAACAAGGACAC 61.229 60.000 0.00 0.00 33.19 3.67
791 829 1.070786 GCCCGTCTCAACAAGGACA 59.929 57.895 0.00 0.00 33.19 4.02
792 830 0.534203 TTGCCCGTCTCAACAAGGAC 60.534 55.000 0.00 0.00 0.00 3.85
793 831 0.181587 TTTGCCCGTCTCAACAAGGA 59.818 50.000 0.00 0.00 0.00 3.36
794 832 0.310854 GTTTGCCCGTCTCAACAAGG 59.689 55.000 0.00 0.00 0.00 3.61
795 833 0.310854 GGTTTGCCCGTCTCAACAAG 59.689 55.000 0.00 0.00 0.00 3.16
796 834 0.394488 TGGTTTGCCCGTCTCAACAA 60.394 50.000 0.00 0.00 35.15 2.83
797 835 1.098712 GTGGTTTGCCCGTCTCAACA 61.099 55.000 0.00 0.00 35.15 3.33
798 836 1.652563 GTGGTTTGCCCGTCTCAAC 59.347 57.895 0.00 0.00 35.15 3.18
799 837 1.527380 GGTGGTTTGCCCGTCTCAA 60.527 57.895 0.00 0.00 35.15 3.02
800 838 1.990160 AAGGTGGTTTGCCCGTCTCA 61.990 55.000 0.00 0.00 35.15 3.27
801 839 1.228154 AAGGTGGTTTGCCCGTCTC 60.228 57.895 0.00 0.00 35.15 3.36
802 840 1.528309 CAAGGTGGTTTGCCCGTCT 60.528 57.895 0.00 0.00 35.15 4.18
803 841 2.561037 CCAAGGTGGTTTGCCCGTC 61.561 63.158 0.00 0.00 35.15 4.79
804 842 2.520741 CCAAGGTGGTTTGCCCGT 60.521 61.111 0.00 0.00 35.15 5.28
805 843 2.203422 TCCAAGGTGGTTTGCCCG 60.203 61.111 0.00 0.00 39.03 6.13
806 844 0.759060 AACTCCAAGGTGGTTTGCCC 60.759 55.000 0.00 0.00 39.03 5.36
807 845 0.673985 GAACTCCAAGGTGGTTTGCC 59.326 55.000 0.00 0.00 39.03 4.52
808 846 0.310854 CGAACTCCAAGGTGGTTTGC 59.689 55.000 0.00 0.00 39.03 3.68
809 847 1.961793 TCGAACTCCAAGGTGGTTTG 58.038 50.000 0.00 7.89 39.03 2.93
810 848 2.504367 CATCGAACTCCAAGGTGGTTT 58.496 47.619 0.00 0.00 39.03 3.27
819 857 3.738982 TCTCTTTTTGCATCGAACTCCA 58.261 40.909 0.00 0.00 0.00 3.86
841 879 5.427157 ACAAATAACTCCAAGGTGGGTTTTT 59.573 36.000 6.50 3.77 38.32 1.94
842 880 4.966168 ACAAATAACTCCAAGGTGGGTTTT 59.034 37.500 6.50 0.00 38.32 2.43
846 884 5.261216 ACATACAAATAACTCCAAGGTGGG 58.739 41.667 0.00 0.00 38.32 4.61
847 885 6.180472 AGACATACAAATAACTCCAAGGTGG 58.820 40.000 0.00 0.00 39.43 4.61
848 886 6.316390 GGAGACATACAAATAACTCCAAGGTG 59.684 42.308 0.00 0.00 42.11 4.00
850 888 6.540189 CAGGAGACATACAAATAACTCCAAGG 59.460 42.308 0.00 0.00 44.11 3.61
851 889 7.278868 GTCAGGAGACATACAAATAACTCCAAG 59.721 40.741 0.00 0.00 44.11 3.61
852 890 7.103641 GTCAGGAGACATACAAATAACTCCAA 58.896 38.462 0.00 0.00 44.11 3.53
853 891 6.640518 GTCAGGAGACATACAAATAACTCCA 58.359 40.000 0.00 0.00 44.11 3.86
865 903 7.340897 ACTGTAGCAGGAGTCAGGAGACATA 62.341 48.000 1.08 0.00 40.48 2.29
866 904 6.651859 ACTGTAGCAGGAGTCAGGAGACAT 62.652 50.000 1.08 0.00 40.48 3.06
867 905 5.410865 ACTGTAGCAGGAGTCAGGAGACA 62.411 52.174 1.08 0.00 40.48 3.41
868 906 1.748493 CTGTAGCAGGAGTCAGGAGAC 59.252 57.143 0.00 0.00 45.31 3.36
869 907 1.356059 ACTGTAGCAGGAGTCAGGAGA 59.644 52.381 1.08 0.00 35.51 3.71
870 908 1.846007 ACTGTAGCAGGAGTCAGGAG 58.154 55.000 1.08 0.00 35.51 3.69
871 909 2.310779 AACTGTAGCAGGAGTCAGGA 57.689 50.000 1.08 0.00 35.51 3.86
872 910 2.826128 TGTAACTGTAGCAGGAGTCAGG 59.174 50.000 1.08 0.00 35.51 3.86
873 911 3.670895 CGTGTAACTGTAGCAGGAGTCAG 60.671 52.174 1.08 0.00 35.51 3.51
876 914 2.030185 CACGTGTAACTGTAGCAGGAGT 60.030 50.000 7.58 0.00 35.51 3.85
928 966 7.130681 AGGAGGACCATAATGAAAACTCTAG 57.869 40.000 0.00 0.00 38.94 2.43
932 970 7.698163 AGATAGGAGGACCATAATGAAAACT 57.302 36.000 0.00 0.00 38.94 2.66
935 973 7.016661 GGAGAAGATAGGAGGACCATAATGAAA 59.983 40.741 0.00 0.00 38.94 2.69
936 974 6.498651 GGAGAAGATAGGAGGACCATAATGAA 59.501 42.308 0.00 0.00 38.94 2.57
937 975 6.019748 GGAGAAGATAGGAGGACCATAATGA 58.980 44.000 0.00 0.00 38.94 2.57
938 976 5.782331 TGGAGAAGATAGGAGGACCATAATG 59.218 44.000 0.00 0.00 38.94 1.90
939 977 5.982391 TGGAGAAGATAGGAGGACCATAAT 58.018 41.667 0.00 0.00 38.94 1.28
940 978 5.418692 TGGAGAAGATAGGAGGACCATAA 57.581 43.478 0.00 0.00 38.94 1.90
1192 1324 5.743422 GCCTCCTACATAGAAGGATTTGGAC 60.743 48.000 0.00 0.00 42.25 4.02
1522 1654 2.082231 TCTCTAAGGAACTCGACCACG 58.918 52.381 0.00 0.00 38.49 4.94
1637 1769 1.796355 CGACGTCGAGCATCACGTT 60.796 57.895 33.35 0.00 46.82 3.99
1712 1844 2.247437 CGCCATAAAGCTCGGCCTC 61.247 63.158 0.00 0.00 43.17 4.70
1777 1909 1.066573 AGCAGATTCCTGAACACCTCG 60.067 52.381 0.00 0.00 43.02 4.63
1807 1939 1.432251 CGGAAGCTCGTCGGTGTAT 59.568 57.895 0.00 0.00 0.00 2.29
1860 1992 0.980231 AGCGGCCTTCAAGAGATCCT 60.980 55.000 0.00 0.00 0.00 3.24
2157 2289 1.697432 TGTCGTCTTCCTCCCATTGTT 59.303 47.619 0.00 0.00 0.00 2.83
2342 2474 8.792633 TCAATTTTTAGACGACCAAGAAATGAT 58.207 29.630 0.00 0.00 0.00 2.45
2388 2520 9.797642 ATATAAAAAGGATCTACATGATGCACA 57.202 29.630 0.00 0.00 44.62 4.57
2438 2570 4.437930 CCCGAGCTCAATTTTCATGACTTC 60.438 45.833 15.40 0.00 0.00 3.01
2472 2604 8.073768 TGAGAAGGTATTGTTTTCACGAAAATC 58.926 33.333 8.12 3.83 41.64 2.17
2478 2610 4.755123 AGGTGAGAAGGTATTGTTTTCACG 59.245 41.667 0.00 0.00 35.51 4.35
2502 2634 5.437191 ACCTCCTCTTTTAACATGGTAGG 57.563 43.478 0.00 0.00 0.00 3.18
2504 2636 7.580882 GCTCTTACCTCCTCTTTTAACATGGTA 60.581 40.741 0.00 0.00 0.00 3.25
2583 2816 2.229784 GCAATCCCCTATATGCTGTTGC 59.770 50.000 0.00 0.00 35.93 4.17
2584 2817 3.759581 AGCAATCCCCTATATGCTGTTG 58.240 45.455 0.00 0.00 46.66 3.33
2589 2822 4.184629 CGAGTTAGCAATCCCCTATATGC 58.815 47.826 0.00 0.00 39.06 3.14
2590 2823 4.184629 GCGAGTTAGCAATCCCCTATATG 58.815 47.826 0.00 0.00 37.05 1.78
2591 2824 3.838317 TGCGAGTTAGCAATCCCCTATAT 59.162 43.478 0.00 0.00 45.06 0.86
2592 2825 3.236047 TGCGAGTTAGCAATCCCCTATA 58.764 45.455 0.00 0.00 45.06 1.31
2593 2826 2.047061 TGCGAGTTAGCAATCCCCTAT 58.953 47.619 0.00 0.00 45.06 2.57
2594 2827 1.491668 TGCGAGTTAGCAATCCCCTA 58.508 50.000 0.00 0.00 45.06 3.53
2595 2828 2.296920 TGCGAGTTAGCAATCCCCT 58.703 52.632 0.00 0.00 45.06 4.79
2596 2829 4.954933 TGCGAGTTAGCAATCCCC 57.045 55.556 0.00 0.00 45.06 4.81
2618 2851 3.916392 AACCGAGCGCTCCAACGAG 62.916 63.158 30.66 15.65 39.33 4.18
2619 2852 3.509137 AAACCGAGCGCTCCAACGA 62.509 57.895 30.66 0.00 34.06 3.85
2620 2853 3.011760 GAAACCGAGCGCTCCAACG 62.012 63.158 30.66 19.77 0.00 4.10
2621 2854 2.861006 GAAACCGAGCGCTCCAAC 59.139 61.111 30.66 14.19 0.00 3.77
2622 2855 2.736995 CGAAACCGAGCGCTCCAA 60.737 61.111 30.66 0.00 0.00 3.53
2623 2856 4.735132 CCGAAACCGAGCGCTCCA 62.735 66.667 30.66 0.00 0.00 3.86
2624 2857 4.430765 TCCGAAACCGAGCGCTCC 62.431 66.667 30.66 15.60 0.00 4.70
2625 2858 3.179939 GTCCGAAACCGAGCGCTC 61.180 66.667 27.64 27.64 0.00 5.03
2626 2859 3.916392 CTGTCCGAAACCGAGCGCT 62.916 63.158 11.27 11.27 0.00 5.92
2627 2860 3.479269 CTGTCCGAAACCGAGCGC 61.479 66.667 0.00 0.00 0.00 5.92
2628 2861 3.479269 GCTGTCCGAAACCGAGCG 61.479 66.667 0.00 0.00 0.00 5.03
2629 2862 2.048127 AGCTGTCCGAAACCGAGC 60.048 61.111 0.00 0.00 0.00 5.03
2630 2863 1.446272 GGAGCTGTCCGAAACCGAG 60.446 63.158 0.00 0.00 31.37 4.63
2631 2864 2.654877 GGAGCTGTCCGAAACCGA 59.345 61.111 0.00 0.00 31.37 4.69
2639 2872 2.496899 TTCCAAATCAGGAGCTGTCC 57.503 50.000 0.00 0.00 44.33 4.02
2640 2873 3.416156 ACTTTCCAAATCAGGAGCTGTC 58.584 45.455 0.00 0.00 39.25 3.51
2641 2874 3.515602 ACTTTCCAAATCAGGAGCTGT 57.484 42.857 0.00 0.00 39.25 4.40
2642 2875 3.944015 CCTACTTTCCAAATCAGGAGCTG 59.056 47.826 0.00 0.00 39.25 4.24
2643 2876 3.623453 GCCTACTTTCCAAATCAGGAGCT 60.623 47.826 0.00 0.00 39.25 4.09
2644 2877 2.685388 GCCTACTTTCCAAATCAGGAGC 59.315 50.000 0.00 0.00 39.25 4.70
2645 2878 3.944015 CTGCCTACTTTCCAAATCAGGAG 59.056 47.826 0.00 0.00 39.25 3.69
2646 2879 3.330701 ACTGCCTACTTTCCAAATCAGGA 59.669 43.478 0.00 0.00 35.41 3.86
2647 2880 3.690460 ACTGCCTACTTTCCAAATCAGG 58.310 45.455 0.00 0.00 0.00 3.86
2648 2881 4.520492 ACAACTGCCTACTTTCCAAATCAG 59.480 41.667 0.00 0.00 0.00 2.90
2649 2882 4.469657 ACAACTGCCTACTTTCCAAATCA 58.530 39.130 0.00 0.00 0.00 2.57
2650 2883 5.453567 AACAACTGCCTACTTTCCAAATC 57.546 39.130 0.00 0.00 0.00 2.17
2651 2884 5.869649 AAACAACTGCCTACTTTCCAAAT 57.130 34.783 0.00 0.00 0.00 2.32
2652 2885 5.420739 AGAAAACAACTGCCTACTTTCCAAA 59.579 36.000 0.00 0.00 0.00 3.28
2653 2886 4.953579 AGAAAACAACTGCCTACTTTCCAA 59.046 37.500 0.00 0.00 0.00 3.53
2654 2887 4.532834 AGAAAACAACTGCCTACTTTCCA 58.467 39.130 0.00 0.00 0.00 3.53
2655 2888 5.515797 AAGAAAACAACTGCCTACTTTCC 57.484 39.130 0.00 0.00 0.00 3.13
2656 2889 6.560711 TCAAAGAAAACAACTGCCTACTTTC 58.439 36.000 0.00 0.00 0.00 2.62
2657 2890 6.405842 CCTCAAAGAAAACAACTGCCTACTTT 60.406 38.462 0.00 0.00 0.00 2.66
2658 2891 5.067805 CCTCAAAGAAAACAACTGCCTACTT 59.932 40.000 0.00 0.00 0.00 2.24
2659 2892 4.580580 CCTCAAAGAAAACAACTGCCTACT 59.419 41.667 0.00 0.00 0.00 2.57
2660 2893 4.578928 TCCTCAAAGAAAACAACTGCCTAC 59.421 41.667 0.00 0.00 0.00 3.18
2661 2894 4.787551 TCCTCAAAGAAAACAACTGCCTA 58.212 39.130 0.00 0.00 0.00 3.93
2662 2895 3.631250 TCCTCAAAGAAAACAACTGCCT 58.369 40.909 0.00 0.00 0.00 4.75
2663 2896 4.590850 ATCCTCAAAGAAAACAACTGCC 57.409 40.909 0.00 0.00 0.00 4.85
2664 2897 6.152379 CCTAATCCTCAAAGAAAACAACTGC 58.848 40.000 0.00 0.00 0.00 4.40
2665 2898 6.294731 CCCCTAATCCTCAAAGAAAACAACTG 60.295 42.308 0.00 0.00 0.00 3.16
2666 2899 5.775195 CCCCTAATCCTCAAAGAAAACAACT 59.225 40.000 0.00 0.00 0.00 3.16
2667 2900 5.773176 TCCCCTAATCCTCAAAGAAAACAAC 59.227 40.000 0.00 0.00 0.00 3.32
2668 2901 5.959512 TCCCCTAATCCTCAAAGAAAACAA 58.040 37.500 0.00 0.00 0.00 2.83
2669 2902 5.592587 TCCCCTAATCCTCAAAGAAAACA 57.407 39.130 0.00 0.00 0.00 2.83
2670 2903 8.589701 TTAATCCCCTAATCCTCAAAGAAAAC 57.410 34.615 0.00 0.00 0.00 2.43
2671 2904 9.782900 AATTAATCCCCTAATCCTCAAAGAAAA 57.217 29.630 0.00 0.00 0.00 2.29
2675 2908 9.301897 CCTTAATTAATCCCCTAATCCTCAAAG 57.698 37.037 0.00 0.00 0.00 2.77
2676 2909 8.797674 ACCTTAATTAATCCCCTAATCCTCAAA 58.202 33.333 0.00 0.00 0.00 2.69
2677 2910 8.224720 CACCTTAATTAATCCCCTAATCCTCAA 58.775 37.037 0.00 0.00 0.00 3.02
2678 2911 7.202279 CCACCTTAATTAATCCCCTAATCCTCA 60.202 40.741 0.00 0.00 0.00 3.86
2679 2912 7.175797 CCACCTTAATTAATCCCCTAATCCTC 58.824 42.308 0.00 0.00 0.00 3.71
2680 2913 6.046762 CCCACCTTAATTAATCCCCTAATCCT 59.953 42.308 0.00 0.00 0.00 3.24
2681 2914 6.253758 CCCACCTTAATTAATCCCCTAATCC 58.746 44.000 0.00 0.00 0.00 3.01
2682 2915 5.715279 GCCCACCTTAATTAATCCCCTAATC 59.285 44.000 0.00 0.00 0.00 1.75
2683 2916 5.460572 GGCCCACCTTAATTAATCCCCTAAT 60.461 44.000 0.00 0.00 0.00 1.73
2684 2917 4.140876 GGCCCACCTTAATTAATCCCCTAA 60.141 45.833 0.00 0.00 0.00 2.69
2685 2918 3.399983 GGCCCACCTTAATTAATCCCCTA 59.600 47.826 0.00 0.00 0.00 3.53
2686 2919 2.179204 GGCCCACCTTAATTAATCCCCT 59.821 50.000 0.00 0.00 0.00 4.79
2687 2920 2.605257 GGCCCACCTTAATTAATCCCC 58.395 52.381 0.00 0.00 0.00 4.81
2688 2921 2.605257 GGGCCCACCTTAATTAATCCC 58.395 52.381 19.95 0.34 35.85 3.85
2689 2922 2.605257 GGGGCCCACCTTAATTAATCC 58.395 52.381 26.86 0.00 40.03 3.01
2690 2923 2.179204 AGGGGGCCCACCTTAATTAATC 59.821 50.000 24.36 0.00 40.03 1.75
2691 2924 2.090775 CAGGGGGCCCACCTTAATTAAT 60.091 50.000 24.36 0.00 40.03 1.40
2692 2925 1.289530 CAGGGGGCCCACCTTAATTAA 59.710 52.381 24.36 0.00 40.03 1.40
2693 2926 0.930726 CAGGGGGCCCACCTTAATTA 59.069 55.000 24.36 0.00 40.03 1.40
2694 2927 0.853586 TCAGGGGGCCCACCTTAATT 60.854 55.000 24.36 0.00 40.03 1.40
2695 2928 0.853586 TTCAGGGGGCCCACCTTAAT 60.854 55.000 24.36 0.00 40.03 1.40
2696 2929 1.074895 TTTCAGGGGGCCCACCTTAA 61.075 55.000 24.36 19.92 40.03 1.85
2697 2930 1.074895 TTTTCAGGGGGCCCACCTTA 61.075 55.000 24.36 14.81 40.03 2.69
2698 2931 1.750087 ATTTTCAGGGGGCCCACCTT 61.750 55.000 24.36 7.53 40.03 3.50
2699 2932 2.168272 GATTTTCAGGGGGCCCACCT 62.168 60.000 24.36 23.27 40.03 4.00
2700 2933 1.685765 GATTTTCAGGGGGCCCACC 60.686 63.158 24.36 21.15 38.92 4.61
2701 2934 0.972471 CTGATTTTCAGGGGGCCCAC 60.972 60.000 26.86 23.59 40.71 4.61
2702 2935 1.387737 CTGATTTTCAGGGGGCCCA 59.612 57.895 26.86 1.73 40.71 5.36
2703 2936 4.362479 CTGATTTTCAGGGGGCCC 57.638 61.111 15.76 15.76 40.71 5.80
2722 2955 0.252197 AGTCAACACTAATCGCCCCC 59.748 55.000 0.00 0.00 0.00 5.40
2723 2956 1.207329 AGAGTCAACACTAATCGCCCC 59.793 52.381 0.00 0.00 30.63 5.80
2724 2957 2.271800 CAGAGTCAACACTAATCGCCC 58.728 52.381 0.00 0.00 30.63 6.13
2725 2958 2.271800 CCAGAGTCAACACTAATCGCC 58.728 52.381 0.00 0.00 30.63 5.54
2726 2959 2.271800 CCCAGAGTCAACACTAATCGC 58.728 52.381 0.00 0.00 30.63 4.58
2727 2960 3.254060 CACCCAGAGTCAACACTAATCG 58.746 50.000 0.00 0.00 30.63 3.34
2728 2961 3.600388 CCACCCAGAGTCAACACTAATC 58.400 50.000 0.00 0.00 30.63 1.75
2729 2962 2.305927 CCCACCCAGAGTCAACACTAAT 59.694 50.000 0.00 0.00 30.63 1.73
2730 2963 1.697432 CCCACCCAGAGTCAACACTAA 59.303 52.381 0.00 0.00 30.63 2.24
2731 2964 1.348064 CCCACCCAGAGTCAACACTA 58.652 55.000 0.00 0.00 30.63 2.74
2732 2965 2.056906 GCCCACCCAGAGTCAACACT 62.057 60.000 0.00 0.00 34.57 3.55
2733 2966 1.600916 GCCCACCCAGAGTCAACAC 60.601 63.158 0.00 0.00 0.00 3.32
2734 2967 2.829384 GGCCCACCCAGAGTCAACA 61.829 63.158 0.00 0.00 0.00 3.33
2735 2968 2.034221 GGCCCACCCAGAGTCAAC 59.966 66.667 0.00 0.00 0.00 3.18
2736 2969 1.774217 AAGGCCCACCCAGAGTCAA 60.774 57.895 0.00 0.00 36.11 3.18
2737 2970 2.121963 AAGGCCCACCCAGAGTCA 60.122 61.111 0.00 0.00 36.11 3.41
2738 2971 2.224159 TCAAGGCCCACCCAGAGTC 61.224 63.158 0.00 0.00 36.11 3.36
2739 2972 2.121963 TCAAGGCCCACCCAGAGT 60.122 61.111 0.00 0.00 36.11 3.24
2740 2973 2.352805 GTCAAGGCCCACCCAGAG 59.647 66.667 0.00 0.00 36.11 3.35
2741 2974 3.636231 CGTCAAGGCCCACCCAGA 61.636 66.667 0.00 0.00 36.11 3.86
2742 2975 2.971598 ATCGTCAAGGCCCACCCAG 61.972 63.158 0.00 0.00 36.11 4.45
2743 2976 2.933287 ATCGTCAAGGCCCACCCA 60.933 61.111 0.00 0.00 36.11 4.51
2744 2977 2.438434 CATCGTCAAGGCCCACCC 60.438 66.667 0.00 0.00 36.11 4.61
2745 2978 2.438434 CCATCGTCAAGGCCCACC 60.438 66.667 0.00 0.00 0.00 4.61
2746 2979 2.040544 CACCATCGTCAAGGCCCAC 61.041 63.158 0.00 0.00 0.00 4.61
2747 2980 2.350895 CACCATCGTCAAGGCCCA 59.649 61.111 0.00 0.00 0.00 5.36
2748 2981 3.134127 GCACCATCGTCAAGGCCC 61.134 66.667 0.00 0.00 0.00 5.80
2749 2982 3.134127 GGCACCATCGTCAAGGCC 61.134 66.667 0.00 0.00 0.00 5.19
2750 2983 1.648467 GAAGGCACCATCGTCAAGGC 61.648 60.000 0.00 0.00 0.00 4.35
2751 2984 1.361668 CGAAGGCACCATCGTCAAGG 61.362 60.000 6.16 0.00 34.22 3.61
2752 2985 0.670546 ACGAAGGCACCATCGTCAAG 60.671 55.000 13.73 0.00 45.88 3.02
2753 2986 0.948623 CACGAAGGCACCATCGTCAA 60.949 55.000 16.32 0.00 45.88 3.18
2754 2987 1.374125 CACGAAGGCACCATCGTCA 60.374 57.895 16.32 0.00 45.88 4.35
2755 2988 1.374252 ACACGAAGGCACCATCGTC 60.374 57.895 16.32 0.00 45.88 4.20
2757 2990 2.390599 CCACACGAAGGCACCATCG 61.391 63.158 12.39 12.39 42.62 3.84
2758 2991 0.392998 ATCCACACGAAGGCACCATC 60.393 55.000 0.00 0.00 0.00 3.51
2759 2992 0.677731 CATCCACACGAAGGCACCAT 60.678 55.000 0.00 0.00 0.00 3.55
2760 2993 1.302431 CATCCACACGAAGGCACCA 60.302 57.895 0.00 0.00 0.00 4.17
2761 2994 2.690778 GCATCCACACGAAGGCACC 61.691 63.158 0.00 0.00 0.00 5.01
2762 2995 2.870372 GCATCCACACGAAGGCAC 59.130 61.111 0.00 0.00 0.00 5.01
2763 2996 2.741985 CGCATCCACACGAAGGCA 60.742 61.111 0.00 0.00 0.00 4.75
2764 2997 4.166011 GCGCATCCACACGAAGGC 62.166 66.667 0.30 0.00 0.00 4.35
2765 2998 2.741985 TGCGCATCCACACGAAGG 60.742 61.111 5.66 0.00 0.00 3.46
2766 2999 1.840630 TTGTGCGCATCCACACGAAG 61.841 55.000 15.91 0.00 44.72 3.79
2767 3000 1.889573 TTGTGCGCATCCACACGAA 60.890 52.632 15.91 0.00 44.72 3.85
2768 3001 2.280457 TTGTGCGCATCCACACGA 60.280 55.556 15.91 0.00 44.72 4.35
2769 3002 2.127270 GTTGTGCGCATCCACACG 60.127 61.111 15.91 0.00 44.72 4.49
2770 3003 1.370414 GTGTTGTGCGCATCCACAC 60.370 57.895 24.74 24.74 44.72 3.82
2771 3004 2.551006 GGTGTTGTGCGCATCCACA 61.551 57.895 27.09 21.09 43.48 4.17
2772 3005 1.865788 ATGGTGTTGTGCGCATCCAC 61.866 55.000 15.91 19.71 36.28 4.02
2773 3006 1.585267 GATGGTGTTGTGCGCATCCA 61.585 55.000 15.91 17.30 0.00 3.41
2774 3007 1.137404 GATGGTGTTGTGCGCATCC 59.863 57.895 15.91 12.09 0.00 3.51
2775 3008 1.137404 GGATGGTGTTGTGCGCATC 59.863 57.895 15.91 8.33 0.00 3.91
2776 3009 2.342650 GGGATGGTGTTGTGCGCAT 61.343 57.895 15.91 0.00 0.00 4.73
2777 3010 2.974692 AAGGGATGGTGTTGTGCGCA 62.975 55.000 5.66 5.66 0.00 6.09
2778 3011 2.268076 AAGGGATGGTGTTGTGCGC 61.268 57.895 0.00 0.00 0.00 6.09
2779 3012 1.172180 ACAAGGGATGGTGTTGTGCG 61.172 55.000 0.00 0.00 33.16 5.34
2780 3013 1.039856 AACAAGGGATGGTGTTGTGC 58.960 50.000 0.00 0.00 34.64 4.57
2781 3014 1.340889 CCAACAAGGGATGGTGTTGTG 59.659 52.381 13.68 4.04 45.81 3.33
2782 3015 1.703411 CCAACAAGGGATGGTGTTGT 58.297 50.000 13.68 0.00 45.81 3.32
2783 3016 0.318120 GCCAACAAGGGATGGTGTTG 59.682 55.000 9.09 9.09 45.81 3.33
2784 3017 0.188342 AGCCAACAAGGGATGGTGTT 59.812 50.000 0.00 0.00 45.81 3.32
2785 3018 0.540365 CAGCCAACAAGGGATGGTGT 60.540 55.000 0.00 0.00 45.81 4.16
2786 3019 2.269978 CAGCCAACAAGGGATGGTG 58.730 57.895 0.00 0.00 46.87 4.17
2787 3020 4.850193 CAGCCAACAAGGGATGGT 57.150 55.556 0.00 0.00 40.63 3.55
2789 3022 0.604578 CAACCAGCCAACAAGGGATG 59.395 55.000 0.00 0.00 43.90 3.51
2790 3023 0.188342 ACAACCAGCCAACAAGGGAT 59.812 50.000 0.00 0.00 38.09 3.85
2791 3024 0.467290 GACAACCAGCCAACAAGGGA 60.467 55.000 0.00 0.00 38.09 4.20
2792 3025 0.754957 TGACAACCAGCCAACAAGGG 60.755 55.000 0.00 0.00 38.09 3.95
2793 3026 0.385390 GTGACAACCAGCCAACAAGG 59.615 55.000 0.00 0.00 41.84 3.61
2794 3027 1.102154 TGTGACAACCAGCCAACAAG 58.898 50.000 0.00 0.00 0.00 3.16
2795 3028 0.814457 GTGTGACAACCAGCCAACAA 59.186 50.000 0.00 0.00 0.00 2.83
2796 3029 1.372838 CGTGTGACAACCAGCCAACA 61.373 55.000 0.00 0.00 0.00 3.33
2797 3030 1.355210 CGTGTGACAACCAGCCAAC 59.645 57.895 0.00 0.00 0.00 3.77
2798 3031 1.078072 ACGTGTGACAACCAGCCAA 60.078 52.632 0.00 0.00 0.00 4.52
2799 3032 1.817520 CACGTGTGACAACCAGCCA 60.818 57.895 7.58 0.00 0.00 4.75
2800 3033 2.542907 CCACGTGTGACAACCAGCC 61.543 63.158 15.65 0.00 0.00 4.85
2801 3034 1.373590 AACCACGTGTGACAACCAGC 61.374 55.000 15.65 0.00 0.00 4.85
2802 3035 0.376852 CAACCACGTGTGACAACCAG 59.623 55.000 15.65 0.00 0.00 4.00
2803 3036 1.027255 CCAACCACGTGTGACAACCA 61.027 55.000 15.65 0.00 0.00 3.67
2804 3037 1.725066 CCAACCACGTGTGACAACC 59.275 57.895 15.65 0.00 0.00 3.77
2805 3038 1.063488 GCCAACCACGTGTGACAAC 59.937 57.895 15.65 0.00 0.00 3.32
2806 3039 2.115911 GGCCAACCACGTGTGACAA 61.116 57.895 15.65 0.00 35.26 3.18
2807 3040 2.515057 GGCCAACCACGTGTGACA 60.515 61.111 15.65 0.00 35.26 3.58
2808 3041 3.284449 GGGCCAACCACGTGTGAC 61.284 66.667 15.65 0.00 39.85 3.67
2809 3042 3.484806 AGGGCCAACCACGTGTGA 61.485 61.111 15.65 0.00 43.89 3.58
2810 3043 3.286751 CAGGGCCAACCACGTGTG 61.287 66.667 15.65 7.01 43.89 3.82
2822 3055 1.755783 CAGGATTTCCAGGCAGGGC 60.756 63.158 0.00 0.00 38.89 5.19
2823 3056 0.040204 AACAGGATTTCCAGGCAGGG 59.960 55.000 0.00 0.00 38.89 4.45
2824 3057 1.928868 AAACAGGATTTCCAGGCAGG 58.071 50.000 0.00 0.00 38.89 4.85
2825 3058 2.611224 GCAAAACAGGATTTCCAGGCAG 60.611 50.000 0.00 0.00 38.89 4.85
2826 3059 1.344114 GCAAAACAGGATTTCCAGGCA 59.656 47.619 0.00 0.00 38.89 4.75
2827 3060 1.338105 GGCAAAACAGGATTTCCAGGC 60.338 52.381 0.00 0.00 38.89 4.85
2828 3061 2.250924 AGGCAAAACAGGATTTCCAGG 58.749 47.619 0.00 0.00 38.89 4.45
2829 3062 3.070015 ACAAGGCAAAACAGGATTTCCAG 59.930 43.478 0.00 0.00 38.89 3.86
2830 3063 3.037549 ACAAGGCAAAACAGGATTTCCA 58.962 40.909 0.00 0.00 38.89 3.53
2831 3064 3.392882 CACAAGGCAAAACAGGATTTCC 58.607 45.455 0.00 0.00 0.00 3.13
2832 3065 2.802247 GCACAAGGCAAAACAGGATTTC 59.198 45.455 0.00 0.00 43.97 2.17
2833 3066 2.802774 CGCACAAGGCAAAACAGGATTT 60.803 45.455 0.00 0.00 45.17 2.17
2834 3067 1.269726 CGCACAAGGCAAAACAGGATT 60.270 47.619 0.00 0.00 45.17 3.01
2835 3068 0.314935 CGCACAAGGCAAAACAGGAT 59.685 50.000 0.00 0.00 45.17 3.24
2836 3069 1.732917 CGCACAAGGCAAAACAGGA 59.267 52.632 0.00 0.00 45.17 3.86
2837 3070 1.950630 GCGCACAAGGCAAAACAGG 60.951 57.895 0.30 0.00 45.17 4.00
2838 3071 1.066257 AGCGCACAAGGCAAAACAG 59.934 52.632 11.47 0.00 45.17 3.16
2839 3072 1.226916 CAGCGCACAAGGCAAAACA 60.227 52.632 11.47 0.00 45.17 2.83
2840 3073 1.950630 CCAGCGCACAAGGCAAAAC 60.951 57.895 11.47 0.00 45.17 2.43
2841 3074 1.954362 AACCAGCGCACAAGGCAAAA 61.954 50.000 11.47 0.00 45.17 2.44
2842 3075 2.348605 GAACCAGCGCACAAGGCAAA 62.349 55.000 11.47 0.00 45.17 3.68
2843 3076 2.832661 AACCAGCGCACAAGGCAA 60.833 55.556 11.47 0.00 45.17 4.52
2844 3077 3.286751 GAACCAGCGCACAAGGCA 61.287 61.111 11.47 0.00 45.17 4.75
2845 3078 4.389576 CGAACCAGCGCACAAGGC 62.390 66.667 11.47 0.00 39.90 4.35
2846 3079 1.577328 ATTCGAACCAGCGCACAAGG 61.577 55.000 11.47 8.53 0.00 3.61
2847 3080 0.179215 GATTCGAACCAGCGCACAAG 60.179 55.000 11.47 0.00 0.00 3.16
2848 3081 1.866237 GATTCGAACCAGCGCACAA 59.134 52.632 11.47 0.00 0.00 3.33
2849 3082 2.379634 CGATTCGAACCAGCGCACA 61.380 57.895 11.47 0.00 0.00 4.57
2850 3083 2.014093 CTCGATTCGAACCAGCGCAC 62.014 60.000 11.47 0.00 34.74 5.34
2851 3084 1.805539 CTCGATTCGAACCAGCGCA 60.806 57.895 11.47 0.00 34.74 6.09
2852 3085 1.805945 ACTCGATTCGAACCAGCGC 60.806 57.895 10.38 0.00 34.74 5.92
2853 3086 1.991430 CACTCGATTCGAACCAGCG 59.009 57.895 10.38 2.47 34.74 5.18
2854 3087 0.737715 AGCACTCGATTCGAACCAGC 60.738 55.000 10.38 10.99 34.74 4.85
2855 3088 0.994995 CAGCACTCGATTCGAACCAG 59.005 55.000 10.38 0.00 34.74 4.00
2856 3089 0.389817 CCAGCACTCGATTCGAACCA 60.390 55.000 10.38 0.00 34.74 3.67
2857 3090 0.108804 TCCAGCACTCGATTCGAACC 60.109 55.000 10.38 0.00 34.74 3.62
2858 3091 1.272781 CTCCAGCACTCGATTCGAAC 58.727 55.000 10.38 3.03 34.74 3.95
2859 3092 0.458543 GCTCCAGCACTCGATTCGAA 60.459 55.000 10.38 0.00 41.59 3.71
2860 3093 1.139734 GCTCCAGCACTCGATTCGA 59.860 57.895 8.70 8.70 41.59 3.71
2861 3094 2.226896 CGCTCCAGCACTCGATTCG 61.227 63.158 0.00 0.00 42.21 3.34
2862 3095 1.880340 CCGCTCCAGCACTCGATTC 60.880 63.158 0.00 0.00 42.21 2.52
2863 3096 2.185350 CCGCTCCAGCACTCGATT 59.815 61.111 0.00 0.00 42.21 3.34
2864 3097 4.521062 GCCGCTCCAGCACTCGAT 62.521 66.667 0.00 0.00 42.21 3.59
2878 3111 2.657484 TACTCTTTCGCGATCGGCCG 62.657 60.000 22.12 22.12 38.94 6.13
2879 3112 0.526954 TTACTCTTTCGCGATCGGCC 60.527 55.000 18.30 0.00 38.94 6.13
2880 3113 1.274596 TTTACTCTTTCGCGATCGGC 58.725 50.000 18.30 8.33 36.13 5.54
2881 3114 2.471743 GGATTTACTCTTTCGCGATCGG 59.528 50.000 18.30 7.26 36.13 4.18
2882 3115 2.151360 CGGATTTACTCTTTCGCGATCG 59.849 50.000 10.88 11.69 0.00 3.69
2883 3116 2.097347 GCGGATTTACTCTTTCGCGATC 60.097 50.000 10.88 0.00 34.08 3.69
2884 3117 1.859080 GCGGATTTACTCTTTCGCGAT 59.141 47.619 10.88 0.00 34.08 4.58
2885 3118 1.274596 GCGGATTTACTCTTTCGCGA 58.725 50.000 3.71 3.71 34.08 5.87
2886 3119 0.996462 TGCGGATTTACTCTTTCGCG 59.004 50.000 0.00 0.00 45.10 5.87
2887 3120 1.267582 GCTGCGGATTTACTCTTTCGC 60.268 52.381 0.00 0.00 42.90 4.70
2888 3121 1.999735 TGCTGCGGATTTACTCTTTCG 59.000 47.619 0.00 0.00 0.00 3.46
2889 3122 5.931441 ATATGCTGCGGATTTACTCTTTC 57.069 39.130 0.00 0.00 0.00 2.62
2890 3123 8.094548 TGTATATATGCTGCGGATTTACTCTTT 58.905 33.333 0.00 0.00 0.00 2.52
2891 3124 7.611770 TGTATATATGCTGCGGATTTACTCTT 58.388 34.615 0.00 0.00 0.00 2.85
2892 3125 7.170393 TGTATATATGCTGCGGATTTACTCT 57.830 36.000 0.00 0.00 0.00 3.24
2893 3126 9.186323 CTATGTATATATGCTGCGGATTTACTC 57.814 37.037 0.00 0.00 0.00 2.59
2894 3127 8.914011 TCTATGTATATATGCTGCGGATTTACT 58.086 33.333 0.00 4.86 0.00 2.24
2895 3128 9.529325 TTCTATGTATATATGCTGCGGATTTAC 57.471 33.333 0.00 1.83 0.00 2.01
2897 3130 9.448438 TTTTCTATGTATATATGCTGCGGATTT 57.552 29.630 0.00 0.00 0.00 2.17
2898 3131 8.883731 GTTTTCTATGTATATATGCTGCGGATT 58.116 33.333 0.00 0.00 0.00 3.01
2899 3132 8.260818 AGTTTTCTATGTATATATGCTGCGGAT 58.739 33.333 0.00 0.00 0.00 4.18
2900 3133 7.611770 AGTTTTCTATGTATATATGCTGCGGA 58.388 34.615 0.00 0.00 0.00 5.54
2901 3134 7.834068 AGTTTTCTATGTATATATGCTGCGG 57.166 36.000 2.37 0.00 0.00 5.69
2902 3135 9.574458 ACTAGTTTTCTATGTATATATGCTGCG 57.426 33.333 2.37 0.00 0.00 5.18
2953 3186 3.518303 ACTCCTACCACCAAATAGTGTCC 59.482 47.826 0.00 0.00 35.93 4.02
2962 3196 4.041198 CCAGAAAGTTACTCCTACCACCAA 59.959 45.833 0.00 0.00 0.00 3.67
3043 3278 2.769663 GTGGTTTTCCCCCTCAAGTTTT 59.230 45.455 0.00 0.00 39.73 2.43
3044 3279 2.394632 GTGGTTTTCCCCCTCAAGTTT 58.605 47.619 0.00 0.00 39.73 2.66
3068 3304 2.046700 GGATTTGGGTGGCGTCGA 60.047 61.111 0.00 0.00 0.00 4.20
3072 3308 0.811281 GAAAGAGGATTTGGGTGGCG 59.189 55.000 0.00 0.00 0.00 5.69
3179 3419 6.350949 GCTCTTGAGCCCCAAATTTTATTGTA 60.351 38.462 11.24 0.00 33.76 2.41
3249 3490 3.697045 AGATCCACTACTTCGTCTCCTTG 59.303 47.826 0.00 0.00 0.00 3.61
3258 3499 3.706594 TGATGGTCCAGATCCACTACTTC 59.293 47.826 0.00 0.00 37.81 3.01
3299 3540 6.484364 AAATTTGAAGGAAGAAGCAAAGGA 57.516 33.333 0.00 0.00 34.21 3.36
3396 3640 1.302285 CCTCCATTCAGCAGCCACT 59.698 57.895 0.00 0.00 0.00 4.00
3469 3713 6.278687 GCATAAGCCCACTACCCATTAGGT 62.279 50.000 0.00 0.00 43.71 3.08
3530 3774 4.592351 CCTTCTCATGTAGGATGTGAGGAT 59.408 45.833 5.66 0.00 39.77 3.24
3576 3822 1.071385 CTATGCTCCCCTCATGTGTCC 59.929 57.143 0.00 0.00 0.00 4.02
3616 3863 5.039333 CCAAATAAGAAGCTACAAGCATGC 58.961 41.667 10.51 10.51 45.56 4.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.