Multiple sequence alignment - TraesCS5D01G058200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G058200 chr5D 100.000 2723 0 0 1 2723 54922106 54919384 0.000000e+00 5029
1 TraesCS5D01G058200 chr5D 92.889 1575 111 1 1 1574 546464142 546465716 0.000000e+00 2287
2 TraesCS5D01G058200 chr5D 87.828 838 76 14 1569 2387 546467289 546468119 0.000000e+00 959
3 TraesCS5D01G058200 chr7A 91.595 2332 167 14 70 2375 676342507 676344835 0.000000e+00 3193
4 TraesCS5D01G058200 chr7A 85.160 2399 316 27 1 2369 734609241 734606853 0.000000e+00 2422
5 TraesCS5D01G058200 chr7A 86.776 2019 232 18 353 2349 186405571 186407576 0.000000e+00 2217
6 TraesCS5D01G058200 chr7A 83.410 1531 224 17 863 2373 650590753 650592273 0.000000e+00 1393
7 TraesCS5D01G058200 chr7A 84.413 911 105 19 1464 2349 36992657 36993555 0.000000e+00 861
8 TraesCS5D01G058200 chr2B 88.089 2376 249 20 1 2350 644420878 644418511 0.000000e+00 2789
9 TraesCS5D01G058200 chr7D 85.114 2405 322 21 1 2381 80753205 80750813 0.000000e+00 2425
10 TraesCS5D01G058200 chr7D 84.609 2404 326 29 1 2375 507197941 507200329 0.000000e+00 2350
11 TraesCS5D01G058200 chr4D 85.095 2375 307 28 1 2350 501056642 501058994 0.000000e+00 2381
12 TraesCS5D01G058200 chrUn 84.596 2402 318 37 1 2365 42518689 42521075 0.000000e+00 2338
13 TraesCS5D01G058200 chrUn 84.590 2401 320 37 1 2365 235978272 235980658 0.000000e+00 2338
14 TraesCS5D01G058200 chr1A 92.169 779 39 5 1619 2375 566333267 566334045 0.000000e+00 1081
15 TraesCS5D01G058200 chr5B 85.915 355 33 9 2380 2722 57498869 57498520 1.990000e-96 363
16 TraesCS5D01G058200 chr5B 83.981 206 29 2 2512 2717 40775532 40775733 7.690000e-46 195
17 TraesCS5D01G058200 chr5B 85.455 165 24 0 2553 2717 40458478 40458642 3.600000e-39 172
18 TraesCS5D01G058200 chr5A 87.898 314 17 9 2422 2722 42735907 42735602 1.550000e-92 350
19 TraesCS5D01G058200 chr5A 85.714 343 21 12 2380 2722 43270460 43270146 1.210000e-88 337
20 TraesCS5D01G058200 chr5A 84.706 170 26 0 2548 2717 32992593 32992762 1.300000e-38 171


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G058200 chr5D 54919384 54922106 2722 True 5029 5029 100.0000 1 2723 1 chr5D.!!$R1 2722
1 TraesCS5D01G058200 chr5D 546464142 546468119 3977 False 1623 2287 90.3585 1 2387 2 chr5D.!!$F1 2386
2 TraesCS5D01G058200 chr7A 676342507 676344835 2328 False 3193 3193 91.5950 70 2375 1 chr7A.!!$F4 2305
3 TraesCS5D01G058200 chr7A 734606853 734609241 2388 True 2422 2422 85.1600 1 2369 1 chr7A.!!$R1 2368
4 TraesCS5D01G058200 chr7A 186405571 186407576 2005 False 2217 2217 86.7760 353 2349 1 chr7A.!!$F2 1996
5 TraesCS5D01G058200 chr7A 650590753 650592273 1520 False 1393 1393 83.4100 863 2373 1 chr7A.!!$F3 1510
6 TraesCS5D01G058200 chr7A 36992657 36993555 898 False 861 861 84.4130 1464 2349 1 chr7A.!!$F1 885
7 TraesCS5D01G058200 chr2B 644418511 644420878 2367 True 2789 2789 88.0890 1 2350 1 chr2B.!!$R1 2349
8 TraesCS5D01G058200 chr7D 80750813 80753205 2392 True 2425 2425 85.1140 1 2381 1 chr7D.!!$R1 2380
9 TraesCS5D01G058200 chr7D 507197941 507200329 2388 False 2350 2350 84.6090 1 2375 1 chr7D.!!$F1 2374
10 TraesCS5D01G058200 chr4D 501056642 501058994 2352 False 2381 2381 85.0950 1 2350 1 chr4D.!!$F1 2349
11 TraesCS5D01G058200 chrUn 42518689 42521075 2386 False 2338 2338 84.5960 1 2365 1 chrUn.!!$F1 2364
12 TraesCS5D01G058200 chrUn 235978272 235980658 2386 False 2338 2338 84.5900 1 2365 1 chrUn.!!$F2 2364
13 TraesCS5D01G058200 chr1A 566333267 566334045 778 False 1081 1081 92.1690 1619 2375 1 chr1A.!!$F1 756

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
158 159 0.039911 AGCCGGAGTAGACAAGGACT 59.960 55.000 5.05 0.0 0.0 3.85 F
628 631 1.004918 CAAGAAGAACTCCGCCGGT 60.005 57.895 1.63 0.0 0.0 5.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1167 1171 0.034476 TGATCGCATCATCTCCCTGC 59.966 55.0 0.0 0.0 33.59 4.85 R
2475 4130 0.032130 GACGACTGCCTCTGTTCACA 59.968 55.0 0.0 0.0 0.00 3.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
158 159 0.039911 AGCCGGAGTAGACAAGGACT 59.960 55.000 5.05 0.00 0.00 3.85
209 210 4.664677 GTGCGCGACCACACTCCT 62.665 66.667 12.10 0.00 35.80 3.69
215 216 1.816863 GCGACCACACTCCTTCTGGA 61.817 60.000 0.00 0.00 40.69 3.86
498 501 3.702048 GGAGCCACACGCACCCTA 61.702 66.667 0.00 0.00 42.06 3.53
628 631 1.004918 CAAGAAGAACTCCGCCGGT 60.005 57.895 1.63 0.00 0.00 5.28
895 899 1.333177 AGTGCTTCGACTCTCCAAGT 58.667 50.000 0.00 0.00 42.42 3.16
936 940 3.055719 CCGCGTGCCTGGAACATT 61.056 61.111 4.92 0.00 38.20 2.71
1014 1018 1.520564 GTACATGCGGTGCGATGGA 60.521 57.895 0.00 0.00 0.00 3.41
1023 1027 3.131478 TGCGATGGAGACGAGCGA 61.131 61.111 0.00 0.00 0.00 4.93
1167 1171 0.529337 ATCTCGGCATCGAAGTGCAG 60.529 55.000 12.73 8.85 46.81 4.41
1236 1240 2.954684 CGTGGACAAGGCTGGGCTA 61.955 63.158 0.00 0.00 0.00 3.93
1306 1310 2.943978 AAGGAGAGCACGAACCCGG 61.944 63.158 0.00 0.00 40.78 5.73
1389 1393 1.065928 GGACATCTCCTACGCGGTG 59.934 63.158 12.47 1.68 33.07 4.94
1398 1402 2.356075 TACGCGGTGGGTTTCGTG 60.356 61.111 12.47 0.00 41.86 4.35
1538 1542 0.391597 CTGGTTGGGTACAGTGACGT 59.608 55.000 0.00 0.00 0.00 4.34
1561 1565 1.066143 ACTTCGCCGGAGATGTTGATT 60.066 47.619 18.96 0.00 0.00 2.57
1669 3265 0.394565 ATCCTATGAAGCCGAGTGCC 59.605 55.000 0.00 0.00 42.71 5.01
1803 3399 3.490348 ACCCTGTTTTCCATGACAGAAG 58.510 45.455 12.56 7.11 44.65 2.85
1814 3410 2.259266 TGACAGAAGCAAGCACATCA 57.741 45.000 0.00 0.00 0.00 3.07
1937 3533 1.827399 GCCTCGGGTGAAGTTCCAGA 61.827 60.000 0.00 0.00 0.00 3.86
2017 3616 5.049129 GTCAGTTAATCAGCTGCAGAAGTTT 60.049 40.000 20.43 11.98 33.31 2.66
2020 3621 3.911661 AATCAGCTGCAGAAGTTTGTC 57.088 42.857 20.43 0.00 0.00 3.18
2047 3648 6.262496 TCAGTTTCGACAGATATAGGTGTAGG 59.738 42.308 0.00 0.00 0.00 3.18
2375 4030 1.791103 GCTCGAGCGCTAGGTCTGAT 61.791 60.000 23.61 0.00 42.35 2.90
2381 4036 1.757118 AGCGCTAGGTCTGATAGCAAA 59.243 47.619 8.99 0.00 44.81 3.68
2383 4038 3.134458 GCGCTAGGTCTGATAGCAAAAT 58.866 45.455 0.00 0.00 44.81 1.82
2384 4039 3.059325 GCGCTAGGTCTGATAGCAAAATG 60.059 47.826 0.00 0.00 44.81 2.32
2386 4041 3.251972 GCTAGGTCTGATAGCAAAATGGC 59.748 47.826 5.61 0.00 44.14 4.40
2387 4042 3.370840 AGGTCTGATAGCAAAATGGCA 57.629 42.857 0.00 0.00 35.83 4.92
2388 4043 3.285484 AGGTCTGATAGCAAAATGGCAG 58.715 45.455 0.00 0.00 35.83 4.85
2389 4044 3.054139 AGGTCTGATAGCAAAATGGCAGA 60.054 43.478 0.00 0.00 35.83 4.26
2390 4045 3.314635 GGTCTGATAGCAAAATGGCAGAG 59.685 47.826 0.00 0.00 33.55 3.35
2391 4046 2.947652 TCTGATAGCAAAATGGCAGAGC 59.052 45.455 0.00 0.00 35.83 4.09
2392 4047 1.672363 TGATAGCAAAATGGCAGAGCG 59.328 47.619 0.00 0.00 35.83 5.03
2393 4048 0.383231 ATAGCAAAATGGCAGAGCGC 59.617 50.000 0.00 0.00 41.28 5.92
2394 4049 1.980951 TAGCAAAATGGCAGAGCGCG 61.981 55.000 0.00 0.00 43.84 6.86
2395 4050 2.202518 CAAAATGGCAGAGCGCGG 60.203 61.111 8.83 0.00 43.84 6.46
2396 4051 2.359850 AAAATGGCAGAGCGCGGA 60.360 55.556 8.83 0.00 43.84 5.54
2397 4052 2.690778 AAAATGGCAGAGCGCGGAC 61.691 57.895 8.83 0.00 43.84 4.79
2398 4053 3.899981 AAATGGCAGAGCGCGGACA 62.900 57.895 8.83 7.73 43.84 4.02
2399 4054 4.827087 ATGGCAGAGCGCGGACAG 62.827 66.667 8.83 1.61 43.84 3.51
2409 4064 4.166011 GCGGACAGGCGATGCAAC 62.166 66.667 0.00 0.00 0.00 4.17
2410 4065 2.741985 CGGACAGGCGATGCAACA 60.742 61.111 0.00 0.00 0.00 3.33
2411 4066 2.108514 CGGACAGGCGATGCAACAT 61.109 57.895 0.00 0.00 0.00 2.71
2412 4067 1.647545 CGGACAGGCGATGCAACATT 61.648 55.000 0.00 0.00 0.00 2.71
2413 4068 1.378531 GGACAGGCGATGCAACATTA 58.621 50.000 0.00 0.00 0.00 1.90
2414 4069 1.742831 GGACAGGCGATGCAACATTAA 59.257 47.619 0.00 0.00 0.00 1.40
2415 4070 2.477863 GGACAGGCGATGCAACATTAAC 60.478 50.000 0.00 0.00 0.00 2.01
2416 4071 1.130373 ACAGGCGATGCAACATTAACG 59.870 47.619 0.00 0.00 0.00 3.18
2417 4072 1.396648 CAGGCGATGCAACATTAACGA 59.603 47.619 0.00 0.00 0.00 3.85
2418 4073 1.396996 AGGCGATGCAACATTAACGAC 59.603 47.619 0.00 0.00 0.00 4.34
2419 4074 1.442765 GCGATGCAACATTAACGACG 58.557 50.000 0.00 0.00 0.00 5.12
2420 4075 1.201877 GCGATGCAACATTAACGACGT 60.202 47.619 0.00 0.00 0.00 4.34
2421 4076 2.678705 CGATGCAACATTAACGACGTC 58.321 47.619 5.18 5.18 0.00 4.34
2422 4077 2.344441 CGATGCAACATTAACGACGTCT 59.656 45.455 14.70 0.00 0.00 4.18
2423 4078 3.539592 CGATGCAACATTAACGACGTCTC 60.540 47.826 14.70 0.00 0.00 3.36
2424 4079 2.063266 TGCAACATTAACGACGTCTCC 58.937 47.619 14.70 0.00 0.00 3.71
2425 4080 2.063266 GCAACATTAACGACGTCTCCA 58.937 47.619 14.70 0.00 0.00 3.86
2426 4081 2.159881 GCAACATTAACGACGTCTCCAC 60.160 50.000 14.70 0.00 0.00 4.02
2437 4092 2.427232 CGTCTCCACGTGAAGGTAAA 57.573 50.000 19.30 0.00 41.42 2.01
2438 4093 2.056577 CGTCTCCACGTGAAGGTAAAC 58.943 52.381 19.30 0.00 41.42 2.01
2439 4094 2.056577 GTCTCCACGTGAAGGTAAACG 58.943 52.381 19.30 0.00 45.15 3.60
2440 4095 1.955778 TCTCCACGTGAAGGTAAACGA 59.044 47.619 19.30 0.81 42.32 3.85
2441 4096 2.030540 TCTCCACGTGAAGGTAAACGAG 60.031 50.000 19.30 11.47 42.32 4.18
2442 4097 1.425412 CCACGTGAAGGTAAACGAGG 58.575 55.000 19.30 0.00 42.57 4.63
2443 4098 0.788391 CACGTGAAGGTAAACGAGGC 59.212 55.000 10.90 0.00 42.32 4.70
2444 4099 0.677842 ACGTGAAGGTAAACGAGGCT 59.322 50.000 1.80 0.00 42.32 4.58
2445 4100 1.888512 ACGTGAAGGTAAACGAGGCTA 59.111 47.619 1.80 0.00 42.32 3.93
2446 4101 2.257034 CGTGAAGGTAAACGAGGCTAC 58.743 52.381 0.00 0.00 42.32 3.58
2447 4102 2.094854 CGTGAAGGTAAACGAGGCTACT 60.095 50.000 0.00 0.00 42.32 2.57
2448 4103 3.127548 CGTGAAGGTAAACGAGGCTACTA 59.872 47.826 0.00 0.00 42.32 1.82
2449 4104 4.419280 GTGAAGGTAAACGAGGCTACTAC 58.581 47.826 0.00 0.00 0.00 2.73
2450 4105 4.081406 TGAAGGTAAACGAGGCTACTACA 58.919 43.478 0.00 0.00 0.00 2.74
2451 4106 4.082571 TGAAGGTAAACGAGGCTACTACAC 60.083 45.833 0.00 0.00 0.00 2.90
2452 4107 3.424703 AGGTAAACGAGGCTACTACACA 58.575 45.455 0.00 0.00 0.00 3.72
2453 4108 3.828451 AGGTAAACGAGGCTACTACACAA 59.172 43.478 0.00 0.00 0.00 3.33
2454 4109 4.082354 AGGTAAACGAGGCTACTACACAAG 60.082 45.833 0.00 0.00 0.00 3.16
2455 4110 4.321527 GGTAAACGAGGCTACTACACAAGT 60.322 45.833 0.00 0.00 42.62 3.16
2456 4111 4.332428 AAACGAGGCTACTACACAAGTT 57.668 40.909 0.00 0.00 39.80 2.66
2457 4112 3.572604 ACGAGGCTACTACACAAGTTC 57.427 47.619 0.00 0.00 39.80 3.01
2458 4113 2.230750 ACGAGGCTACTACACAAGTTCC 59.769 50.000 0.00 0.00 39.80 3.62
2459 4114 2.731341 CGAGGCTACTACACAAGTTCCG 60.731 54.545 0.00 0.00 39.80 4.30
2460 4115 2.490903 GAGGCTACTACACAAGTTCCGA 59.509 50.000 0.00 0.00 39.80 4.55
2461 4116 3.097614 AGGCTACTACACAAGTTCCGAT 58.902 45.455 0.00 0.00 39.80 4.18
2462 4117 3.514309 AGGCTACTACACAAGTTCCGATT 59.486 43.478 0.00 0.00 39.80 3.34
2463 4118 4.020485 AGGCTACTACACAAGTTCCGATTT 60.020 41.667 0.00 0.00 39.80 2.17
2464 4119 4.694037 GGCTACTACACAAGTTCCGATTTT 59.306 41.667 0.00 0.00 39.80 1.82
2465 4120 5.180680 GGCTACTACACAAGTTCCGATTTTT 59.819 40.000 0.00 0.00 39.80 1.94
2466 4121 6.304882 GCTACTACACAAGTTCCGATTTTTC 58.695 40.000 0.00 0.00 39.80 2.29
2467 4122 6.147328 GCTACTACACAAGTTCCGATTTTTCT 59.853 38.462 0.00 0.00 39.80 2.52
2468 4123 6.937436 ACTACACAAGTTCCGATTTTTCTT 57.063 33.333 0.00 0.00 33.35 2.52
2469 4124 7.329588 ACTACACAAGTTCCGATTTTTCTTT 57.670 32.000 0.00 0.00 33.35 2.52
2470 4125 7.415229 ACTACACAAGTTCCGATTTTTCTTTC 58.585 34.615 0.00 0.00 33.35 2.62
2471 4126 6.451064 ACACAAGTTCCGATTTTTCTTTCT 57.549 33.333 0.00 0.00 0.00 2.52
2472 4127 6.265577 ACACAAGTTCCGATTTTTCTTTCTG 58.734 36.000 0.00 0.00 0.00 3.02
2473 4128 6.094881 ACACAAGTTCCGATTTTTCTTTCTGA 59.905 34.615 0.00 0.00 0.00 3.27
2474 4129 6.972328 CACAAGTTCCGATTTTTCTTTCTGAA 59.028 34.615 0.00 0.00 0.00 3.02
2475 4130 7.649306 CACAAGTTCCGATTTTTCTTTCTGAAT 59.351 33.333 0.00 0.00 34.24 2.57
2476 4131 7.649306 ACAAGTTCCGATTTTTCTTTCTGAATG 59.351 33.333 0.00 0.00 34.24 2.67
2477 4132 7.277174 AGTTCCGATTTTTCTTTCTGAATGT 57.723 32.000 3.59 0.00 34.24 2.71
2478 4133 7.141363 AGTTCCGATTTTTCTTTCTGAATGTG 58.859 34.615 3.59 0.00 34.24 3.21
2479 4134 6.875948 TCCGATTTTTCTTTCTGAATGTGA 57.124 33.333 3.59 0.00 34.24 3.58
2480 4135 7.270757 TCCGATTTTTCTTTCTGAATGTGAA 57.729 32.000 3.59 1.32 34.24 3.18
2481 4136 7.138736 TCCGATTTTTCTTTCTGAATGTGAAC 58.861 34.615 3.59 0.00 34.24 3.18
2482 4137 6.917477 CCGATTTTTCTTTCTGAATGTGAACA 59.083 34.615 3.59 0.00 34.24 3.18
2483 4138 7.113965 CCGATTTTTCTTTCTGAATGTGAACAG 59.886 37.037 3.59 0.00 34.24 3.16
2484 4139 7.857389 CGATTTTTCTTTCTGAATGTGAACAGA 59.143 33.333 0.00 0.00 40.66 3.41
2485 4140 9.178427 GATTTTTCTTTCTGAATGTGAACAGAG 57.822 33.333 0.00 0.00 42.72 3.35
2486 4141 6.624352 TTTCTTTCTGAATGTGAACAGAGG 57.376 37.500 0.00 0.00 42.72 3.69
2487 4142 4.067896 TCTTTCTGAATGTGAACAGAGGC 58.932 43.478 0.00 0.00 42.72 4.70
2488 4143 3.490439 TTCTGAATGTGAACAGAGGCA 57.510 42.857 0.00 0.00 42.72 4.75
2489 4144 3.049708 TCTGAATGTGAACAGAGGCAG 57.950 47.619 0.00 0.00 38.08 4.85
2490 4145 2.369860 TCTGAATGTGAACAGAGGCAGT 59.630 45.455 0.00 0.00 38.08 4.40
2491 4146 2.740981 CTGAATGTGAACAGAGGCAGTC 59.259 50.000 0.00 0.00 36.38 3.51
2492 4147 1.728971 GAATGTGAACAGAGGCAGTCG 59.271 52.381 0.00 0.00 0.00 4.18
2493 4148 0.681733 ATGTGAACAGAGGCAGTCGT 59.318 50.000 0.00 0.00 0.00 4.34
2494 4149 0.032130 TGTGAACAGAGGCAGTCGTC 59.968 55.000 0.00 0.00 0.00 4.20
2495 4150 0.315568 GTGAACAGAGGCAGTCGTCT 59.684 55.000 0.00 0.00 37.89 4.18
2496 4151 1.040646 TGAACAGAGGCAGTCGTCTT 58.959 50.000 0.00 0.00 35.44 3.01
2497 4152 1.000163 TGAACAGAGGCAGTCGTCTTC 60.000 52.381 0.00 0.00 35.44 2.87
2498 4153 0.318762 AACAGAGGCAGTCGTCTTCC 59.681 55.000 0.00 0.00 35.44 3.46
2499 4154 0.827925 ACAGAGGCAGTCGTCTTCCA 60.828 55.000 1.01 0.00 35.44 3.53
2500 4155 0.389166 CAGAGGCAGTCGTCTTCCAC 60.389 60.000 1.01 0.00 35.44 4.02
2501 4156 0.540830 AGAGGCAGTCGTCTTCCACT 60.541 55.000 1.01 0.00 34.04 4.00
2502 4157 0.109039 GAGGCAGTCGTCTTCCACTC 60.109 60.000 1.01 0.00 29.44 3.51
2503 4158 1.079750 GGCAGTCGTCTTCCACTCC 60.080 63.158 0.00 0.00 0.00 3.85
2504 4159 1.536943 GGCAGTCGTCTTCCACTCCT 61.537 60.000 0.00 0.00 0.00 3.69
2505 4160 0.318762 GCAGTCGTCTTCCACTCCTT 59.681 55.000 0.00 0.00 0.00 3.36
2506 4161 1.670380 GCAGTCGTCTTCCACTCCTTC 60.670 57.143 0.00 0.00 0.00 3.46
2507 4162 1.067495 CAGTCGTCTTCCACTCCTTCC 60.067 57.143 0.00 0.00 0.00 3.46
2508 4163 0.966920 GTCGTCTTCCACTCCTTCCA 59.033 55.000 0.00 0.00 0.00 3.53
2509 4164 1.343465 GTCGTCTTCCACTCCTTCCAA 59.657 52.381 0.00 0.00 0.00 3.53
2510 4165 2.028020 GTCGTCTTCCACTCCTTCCAAT 60.028 50.000 0.00 0.00 0.00 3.16
2511 4166 2.233922 TCGTCTTCCACTCCTTCCAATC 59.766 50.000 0.00 0.00 0.00 2.67
2512 4167 2.234908 CGTCTTCCACTCCTTCCAATCT 59.765 50.000 0.00 0.00 0.00 2.40
2513 4168 3.307059 CGTCTTCCACTCCTTCCAATCTT 60.307 47.826 0.00 0.00 0.00 2.40
2514 4169 4.006319 GTCTTCCACTCCTTCCAATCTTG 58.994 47.826 0.00 0.00 0.00 3.02
2515 4170 2.496899 TCCACTCCTTCCAATCTTGC 57.503 50.000 0.00 0.00 0.00 4.01
2516 4171 1.988107 TCCACTCCTTCCAATCTTGCT 59.012 47.619 0.00 0.00 0.00 3.91
2517 4172 3.181329 TCCACTCCTTCCAATCTTGCTA 58.819 45.455 0.00 0.00 0.00 3.49
2518 4173 3.055094 TCCACTCCTTCCAATCTTGCTAC 60.055 47.826 0.00 0.00 0.00 3.58
2519 4174 3.274288 CACTCCTTCCAATCTTGCTACC 58.726 50.000 0.00 0.00 0.00 3.18
2520 4175 3.054802 CACTCCTTCCAATCTTGCTACCT 60.055 47.826 0.00 0.00 0.00 3.08
2521 4176 3.198853 ACTCCTTCCAATCTTGCTACCTC 59.801 47.826 0.00 0.00 0.00 3.85
2522 4177 3.181329 TCCTTCCAATCTTGCTACCTCA 58.819 45.455 0.00 0.00 0.00 3.86
2523 4178 3.198635 TCCTTCCAATCTTGCTACCTCAG 59.801 47.826 0.00 0.00 0.00 3.35
2531 4186 2.820037 GCTACCTCAGCCCAACGC 60.820 66.667 0.00 0.00 45.23 4.84
2532 4187 2.125106 CTACCTCAGCCCAACGCC 60.125 66.667 0.00 0.00 38.78 5.68
2533 4188 2.925706 TACCTCAGCCCAACGCCA 60.926 61.111 0.00 0.00 38.78 5.69
2534 4189 2.859273 CTACCTCAGCCCAACGCCAG 62.859 65.000 0.00 0.00 38.78 4.85
2535 4190 4.020617 CCTCAGCCCAACGCCAGA 62.021 66.667 0.00 0.00 38.78 3.86
2536 4191 2.032528 CTCAGCCCAACGCCAGAA 59.967 61.111 0.00 0.00 38.78 3.02
2537 4192 1.377725 CTCAGCCCAACGCCAGAAT 60.378 57.895 0.00 0.00 38.78 2.40
2538 4193 0.962356 CTCAGCCCAACGCCAGAATT 60.962 55.000 0.00 0.00 38.78 2.17
2539 4194 0.326595 TCAGCCCAACGCCAGAATTA 59.673 50.000 0.00 0.00 38.78 1.40
2540 4195 1.173043 CAGCCCAACGCCAGAATTAA 58.827 50.000 0.00 0.00 38.78 1.40
2541 4196 1.750778 CAGCCCAACGCCAGAATTAAT 59.249 47.619 0.00 0.00 38.78 1.40
2542 4197 1.750778 AGCCCAACGCCAGAATTAATG 59.249 47.619 0.00 0.00 38.78 1.90
2543 4198 1.802508 GCCCAACGCCAGAATTAATGC 60.803 52.381 0.00 0.00 0.00 3.56
2544 4199 1.202405 CCCAACGCCAGAATTAATGCC 60.202 52.381 0.00 0.00 0.00 4.40
2545 4200 1.533756 CCAACGCCAGAATTAATGCCG 60.534 52.381 0.00 0.00 0.00 5.69
2546 4201 1.400142 CAACGCCAGAATTAATGCCGA 59.600 47.619 1.16 0.00 0.00 5.54
2547 4202 1.745232 ACGCCAGAATTAATGCCGAA 58.255 45.000 1.16 0.00 0.00 4.30
2548 4203 1.670811 ACGCCAGAATTAATGCCGAAG 59.329 47.619 1.16 0.00 0.00 3.79
2549 4204 1.597937 CGCCAGAATTAATGCCGAAGC 60.598 52.381 0.00 0.00 40.48 3.86
2550 4205 1.597937 GCCAGAATTAATGCCGAAGCG 60.598 52.381 0.00 0.00 44.31 4.68
2551 4206 1.670811 CCAGAATTAATGCCGAAGCGT 59.329 47.619 0.00 0.00 44.31 5.07
2552 4207 2.286418 CCAGAATTAATGCCGAAGCGTC 60.286 50.000 0.00 0.00 44.31 5.19
2561 4216 4.238385 CGAAGCGTCGGAAAGTCA 57.762 55.556 14.59 0.00 43.81 3.41
2562 4217 1.773496 CGAAGCGTCGGAAAGTCAC 59.227 57.895 14.59 0.00 43.81 3.67
2563 4218 1.773496 GAAGCGTCGGAAAGTCACG 59.227 57.895 0.00 0.00 36.60 4.35
2564 4219 0.938168 GAAGCGTCGGAAAGTCACGT 60.938 55.000 0.00 0.00 35.91 4.49
2565 4220 0.938168 AAGCGTCGGAAAGTCACGTC 60.938 55.000 0.00 0.00 35.91 4.34
2566 4221 2.370393 GCGTCGGAAAGTCACGTCC 61.370 63.158 0.00 0.00 35.91 4.79
2570 4225 2.029964 GGAAAGTCACGTCCGCCA 59.970 61.111 0.00 0.00 0.00 5.69
2571 4226 1.375523 GGAAAGTCACGTCCGCCAT 60.376 57.895 0.00 0.00 0.00 4.40
2572 4227 0.953960 GGAAAGTCACGTCCGCCATT 60.954 55.000 0.00 0.00 0.00 3.16
2573 4228 0.165944 GAAAGTCACGTCCGCCATTG 59.834 55.000 0.00 0.00 0.00 2.82
2574 4229 0.534203 AAAGTCACGTCCGCCATTGT 60.534 50.000 0.00 0.00 0.00 2.71
2575 4230 0.319083 AAGTCACGTCCGCCATTGTA 59.681 50.000 0.00 0.00 0.00 2.41
2576 4231 0.108804 AGTCACGTCCGCCATTGTAG 60.109 55.000 0.00 0.00 0.00 2.74
2577 4232 1.447140 TCACGTCCGCCATTGTAGC 60.447 57.895 0.00 0.00 0.00 3.58
2578 4233 1.447838 CACGTCCGCCATTGTAGCT 60.448 57.895 0.00 0.00 0.00 3.32
2579 4234 1.447838 ACGTCCGCCATTGTAGCTG 60.448 57.895 0.00 0.00 0.00 4.24
2580 4235 1.153647 CGTCCGCCATTGTAGCTGA 60.154 57.895 0.00 0.00 0.00 4.26
2581 4236 0.739462 CGTCCGCCATTGTAGCTGAA 60.739 55.000 0.00 0.00 0.00 3.02
2582 4237 1.009829 GTCCGCCATTGTAGCTGAAG 58.990 55.000 0.00 0.00 0.00 3.02
2583 4238 0.901827 TCCGCCATTGTAGCTGAAGA 59.098 50.000 0.00 0.00 0.00 2.87
2584 4239 1.277842 TCCGCCATTGTAGCTGAAGAA 59.722 47.619 0.00 0.00 0.00 2.52
2585 4240 1.667724 CCGCCATTGTAGCTGAAGAAG 59.332 52.381 0.00 0.00 0.00 2.85
2586 4241 2.621338 CGCCATTGTAGCTGAAGAAGA 58.379 47.619 0.00 0.00 0.00 2.87
2587 4242 2.606725 CGCCATTGTAGCTGAAGAAGAG 59.393 50.000 0.00 0.00 0.00 2.85
2588 4243 3.677148 CGCCATTGTAGCTGAAGAAGAGA 60.677 47.826 0.00 0.00 0.00 3.10
2589 4244 3.870419 GCCATTGTAGCTGAAGAAGAGAG 59.130 47.826 0.00 0.00 0.00 3.20
2590 4245 4.382470 GCCATTGTAGCTGAAGAAGAGAGA 60.382 45.833 0.00 0.00 0.00 3.10
2591 4246 5.728471 CCATTGTAGCTGAAGAAGAGAGAA 58.272 41.667 0.00 0.00 0.00 2.87
2592 4247 5.811613 CCATTGTAGCTGAAGAAGAGAGAAG 59.188 44.000 0.00 0.00 0.00 2.85
2593 4248 5.398603 TTGTAGCTGAAGAAGAGAGAAGG 57.601 43.478 0.00 0.00 0.00 3.46
2594 4249 4.667573 TGTAGCTGAAGAAGAGAGAAGGA 58.332 43.478 0.00 0.00 0.00 3.36
2595 4250 4.461081 TGTAGCTGAAGAAGAGAGAAGGAC 59.539 45.833 0.00 0.00 0.00 3.85
2596 4251 2.491693 AGCTGAAGAAGAGAGAAGGACG 59.508 50.000 0.00 0.00 0.00 4.79
2597 4252 2.874849 CTGAAGAAGAGAGAAGGACGC 58.125 52.381 0.00 0.00 0.00 5.19
2598 4253 2.230025 CTGAAGAAGAGAGAAGGACGCA 59.770 50.000 0.00 0.00 0.00 5.24
2599 4254 2.029828 TGAAGAAGAGAGAAGGACGCAC 60.030 50.000 0.00 0.00 0.00 5.34
2600 4255 0.523966 AGAAGAGAGAAGGACGCACG 59.476 55.000 0.00 0.00 0.00 5.34
2601 4256 0.241481 GAAGAGAGAAGGACGCACGT 59.759 55.000 0.00 0.00 0.00 4.49
2602 4257 0.039074 AAGAGAGAAGGACGCACGTG 60.039 55.000 12.28 12.28 0.00 4.49
2603 4258 0.889638 AGAGAGAAGGACGCACGTGA 60.890 55.000 22.23 0.00 0.00 4.35
2604 4259 0.171455 GAGAGAAGGACGCACGTGAT 59.829 55.000 22.23 6.01 0.00 3.06
2605 4260 0.171455 AGAGAAGGACGCACGTGATC 59.829 55.000 22.23 15.53 0.00 2.92
2606 4261 0.109272 GAGAAGGACGCACGTGATCA 60.109 55.000 22.23 0.00 0.00 2.92
2607 4262 0.317160 AGAAGGACGCACGTGATCAA 59.683 50.000 22.23 0.00 0.00 2.57
2608 4263 0.438830 GAAGGACGCACGTGATCAAC 59.561 55.000 22.23 4.61 0.00 3.18
2609 4264 0.249699 AAGGACGCACGTGATCAACA 60.250 50.000 22.23 0.00 0.00 3.33
2610 4265 0.037326 AGGACGCACGTGATCAACAT 60.037 50.000 22.23 0.00 0.00 2.71
2611 4266 1.203758 AGGACGCACGTGATCAACATA 59.796 47.619 22.23 0.00 0.00 2.29
2612 4267 1.588404 GGACGCACGTGATCAACATAG 59.412 52.381 22.23 0.62 0.00 2.23
2613 4268 2.526077 GACGCACGTGATCAACATAGA 58.474 47.619 22.23 0.00 0.00 1.98
2614 4269 3.116300 GACGCACGTGATCAACATAGAT 58.884 45.455 22.23 0.00 0.00 1.98
2615 4270 2.860136 ACGCACGTGATCAACATAGATG 59.140 45.455 22.23 0.00 0.00 2.90
2616 4271 2.219445 CGCACGTGATCAACATAGATGG 59.781 50.000 22.23 0.00 0.00 3.51
2617 4272 2.545526 GCACGTGATCAACATAGATGGG 59.454 50.000 22.23 0.00 0.00 4.00
2618 4273 3.797039 CACGTGATCAACATAGATGGGT 58.203 45.455 10.90 0.00 0.00 4.51
2619 4274 4.739436 GCACGTGATCAACATAGATGGGTA 60.739 45.833 22.23 0.00 0.00 3.69
2620 4275 4.745125 CACGTGATCAACATAGATGGGTAC 59.255 45.833 10.90 0.00 0.00 3.34
2621 4276 4.649674 ACGTGATCAACATAGATGGGTACT 59.350 41.667 0.00 0.00 0.00 2.73
2622 4277 5.221263 ACGTGATCAACATAGATGGGTACTC 60.221 44.000 0.00 0.00 0.00 2.59
2623 4278 5.221244 CGTGATCAACATAGATGGGTACTCA 60.221 44.000 0.00 0.00 0.00 3.41
2624 4279 6.582636 GTGATCAACATAGATGGGTACTCAA 58.417 40.000 0.00 0.00 0.00 3.02
2625 4280 6.703607 GTGATCAACATAGATGGGTACTCAAG 59.296 42.308 0.00 0.00 0.00 3.02
2626 4281 6.611236 TGATCAACATAGATGGGTACTCAAGA 59.389 38.462 0.00 0.00 0.00 3.02
2627 4282 6.867519 TCAACATAGATGGGTACTCAAGAA 57.132 37.500 0.00 0.00 0.00 2.52
2628 4283 6.640518 TCAACATAGATGGGTACTCAAGAAC 58.359 40.000 0.00 0.00 0.00 3.01
2629 4284 5.615925 ACATAGATGGGTACTCAAGAACC 57.384 43.478 0.00 0.00 34.85 3.62
2630 4285 5.030147 ACATAGATGGGTACTCAAGAACCA 58.970 41.667 0.00 0.00 37.51 3.67
2631 4286 5.487488 ACATAGATGGGTACTCAAGAACCAA 59.513 40.000 0.00 0.00 37.51 3.67
2632 4287 4.559862 AGATGGGTACTCAAGAACCAAG 57.440 45.455 0.00 0.00 37.51 3.61
2633 4288 3.264450 AGATGGGTACTCAAGAACCAAGG 59.736 47.826 0.00 0.00 37.51 3.61
2634 4289 2.696775 TGGGTACTCAAGAACCAAGGA 58.303 47.619 0.00 0.00 37.51 3.36
2635 4290 2.637872 TGGGTACTCAAGAACCAAGGAG 59.362 50.000 0.00 0.00 37.51 3.69
2636 4291 2.615747 GGGTACTCAAGAACCAAGGAGC 60.616 54.545 0.00 0.00 37.51 4.70
2637 4292 2.303311 GGTACTCAAGAACCAAGGAGCT 59.697 50.000 0.00 0.00 35.73 4.09
2638 4293 2.557920 ACTCAAGAACCAAGGAGCTG 57.442 50.000 0.00 0.00 0.00 4.24
2639 4294 1.163554 CTCAAGAACCAAGGAGCTGC 58.836 55.000 0.00 0.00 0.00 5.25
2640 4295 0.767375 TCAAGAACCAAGGAGCTGCT 59.233 50.000 0.00 0.00 0.00 4.24
2641 4296 1.163554 CAAGAACCAAGGAGCTGCTC 58.836 55.000 21.17 21.17 0.00 4.26
2642 4297 0.767375 AAGAACCAAGGAGCTGCTCA 59.233 50.000 28.95 0.00 31.08 4.26
2643 4298 0.767375 AGAACCAAGGAGCTGCTCAA 59.233 50.000 28.95 0.00 31.08 3.02
2644 4299 1.163554 GAACCAAGGAGCTGCTCAAG 58.836 55.000 28.95 17.68 31.08 3.02
2645 4300 0.251077 AACCAAGGAGCTGCTCAAGG 60.251 55.000 28.95 26.01 31.08 3.61
2646 4301 1.377994 CCAAGGAGCTGCTCAAGGT 59.622 57.895 28.95 9.32 40.07 3.50
2650 4305 2.817396 GAGCTGCTCAAGGTCGGC 60.817 66.667 24.02 0.00 43.17 5.54
2651 4306 4.749310 AGCTGCTCAAGGTCGGCG 62.749 66.667 0.00 0.00 39.45 6.46
2652 4307 4.742201 GCTGCTCAAGGTCGGCGA 62.742 66.667 4.99 4.99 0.00 5.54
2653 4308 2.811317 CTGCTCAAGGTCGGCGAC 60.811 66.667 30.72 30.72 0.00 5.19
2654 4309 3.288308 CTGCTCAAGGTCGGCGACT 62.288 63.158 35.42 20.74 32.47 4.18
2655 4310 2.811317 GCTCAAGGTCGGCGACTG 60.811 66.667 35.42 27.20 32.47 3.51
2656 4311 2.651361 CTCAAGGTCGGCGACTGT 59.349 61.111 35.42 22.32 32.47 3.55
2657 4312 1.880894 CTCAAGGTCGGCGACTGTA 59.119 57.895 35.42 19.21 32.47 2.74
2658 4313 0.456312 CTCAAGGTCGGCGACTGTAC 60.456 60.000 35.42 20.97 32.47 2.90
2659 4314 1.445582 CAAGGTCGGCGACTGTACC 60.446 63.158 35.42 21.77 32.47 3.34
2660 4315 1.904865 AAGGTCGGCGACTGTACCA 60.905 57.895 35.42 0.00 34.29 3.25
2661 4316 2.126189 GGTCGGCGACTGTACCAC 60.126 66.667 35.42 16.23 32.47 4.16
2662 4317 2.646719 GTCGGCGACTGTACCACA 59.353 61.111 31.15 0.00 0.00 4.17
2663 4318 1.214589 GTCGGCGACTGTACCACAT 59.785 57.895 31.15 0.00 0.00 3.21
2664 4319 0.801067 GTCGGCGACTGTACCACATC 60.801 60.000 31.15 1.04 0.00 3.06
2665 4320 1.518572 CGGCGACTGTACCACATCC 60.519 63.158 0.00 0.00 0.00 3.51
2666 4321 1.594833 GGCGACTGTACCACATCCA 59.405 57.895 0.00 0.00 0.00 3.41
2667 4322 0.178068 GGCGACTGTACCACATCCAT 59.822 55.000 0.00 0.00 0.00 3.41
2668 4323 1.571919 GCGACTGTACCACATCCATC 58.428 55.000 0.00 0.00 0.00 3.51
2669 4324 1.806623 GCGACTGTACCACATCCATCC 60.807 57.143 0.00 0.00 0.00 3.51
2670 4325 1.202533 CGACTGTACCACATCCATCCC 60.203 57.143 0.00 0.00 0.00 3.85
2671 4326 2.119495 GACTGTACCACATCCATCCCT 58.881 52.381 0.00 0.00 0.00 4.20
2672 4327 2.505819 GACTGTACCACATCCATCCCTT 59.494 50.000 0.00 0.00 0.00 3.95
2673 4328 2.919602 ACTGTACCACATCCATCCCTTT 59.080 45.455 0.00 0.00 0.00 3.11
2674 4329 3.054361 ACTGTACCACATCCATCCCTTTC 60.054 47.826 0.00 0.00 0.00 2.62
2675 4330 2.916269 TGTACCACATCCATCCCTTTCA 59.084 45.455 0.00 0.00 0.00 2.69
2676 4331 3.527253 TGTACCACATCCATCCCTTTCAT 59.473 43.478 0.00 0.00 0.00 2.57
2677 4332 3.022557 ACCACATCCATCCCTTTCATG 57.977 47.619 0.00 0.00 0.00 3.07
2678 4333 2.313317 CCACATCCATCCCTTTCATGG 58.687 52.381 0.00 0.00 42.16 3.66
2679 4334 2.358510 CCACATCCATCCCTTTCATGGT 60.359 50.000 0.00 0.00 41.59 3.55
2680 4335 2.691526 CACATCCATCCCTTTCATGGTG 59.308 50.000 0.00 0.61 41.59 4.17
2681 4336 2.313317 CATCCATCCCTTTCATGGTGG 58.687 52.381 0.00 0.00 41.59 4.61
2682 4337 0.630673 TCCATCCCTTTCATGGTGGG 59.369 55.000 10.93 10.93 41.59 4.61
2685 4340 3.511552 TCCCTTTCATGGTGGGAGA 57.488 52.632 14.45 3.00 44.37 3.71
2686 4341 1.985622 TCCCTTTCATGGTGGGAGAT 58.014 50.000 14.45 0.00 44.37 2.75
2687 4342 1.846439 TCCCTTTCATGGTGGGAGATC 59.154 52.381 14.45 0.00 44.37 2.75
2688 4343 1.565759 CCCTTTCATGGTGGGAGATCA 59.434 52.381 11.53 0.00 43.47 2.92
2689 4344 2.176364 CCCTTTCATGGTGGGAGATCAT 59.824 50.000 11.53 0.00 43.47 2.45
2690 4345 3.395607 CCCTTTCATGGTGGGAGATCATA 59.604 47.826 11.53 0.00 43.47 2.15
2691 4346 4.141181 CCCTTTCATGGTGGGAGATCATAA 60.141 45.833 11.53 0.00 43.47 1.90
2692 4347 4.823989 CCTTTCATGGTGGGAGATCATAAC 59.176 45.833 0.00 0.00 0.00 1.89
2693 4348 5.398353 CCTTTCATGGTGGGAGATCATAACT 60.398 44.000 0.00 0.00 0.00 2.24
2694 4349 4.694760 TCATGGTGGGAGATCATAACTG 57.305 45.455 0.00 0.00 0.00 3.16
2695 4350 3.392285 TCATGGTGGGAGATCATAACTGG 59.608 47.826 0.00 0.00 0.00 4.00
2696 4351 2.126882 TGGTGGGAGATCATAACTGGG 58.873 52.381 0.00 0.00 0.00 4.45
2697 4352 2.127708 GGTGGGAGATCATAACTGGGT 58.872 52.381 0.00 0.00 0.00 4.51
2698 4353 2.104963 GGTGGGAGATCATAACTGGGTC 59.895 54.545 0.00 0.00 0.00 4.46
2699 4354 2.039418 TGGGAGATCATAACTGGGTCG 58.961 52.381 0.00 0.00 0.00 4.79
2700 4355 2.040178 GGGAGATCATAACTGGGTCGT 58.960 52.381 0.00 0.00 0.00 4.34
2701 4356 2.036089 GGGAGATCATAACTGGGTCGTC 59.964 54.545 0.00 0.00 0.00 4.20
2702 4357 2.693591 GGAGATCATAACTGGGTCGTCA 59.306 50.000 0.00 0.00 0.00 4.35
2703 4358 3.132289 GGAGATCATAACTGGGTCGTCAA 59.868 47.826 0.00 0.00 0.00 3.18
2704 4359 4.363999 GAGATCATAACTGGGTCGTCAAG 58.636 47.826 0.00 0.00 0.00 3.02
2705 4360 3.769844 AGATCATAACTGGGTCGTCAAGT 59.230 43.478 0.00 0.00 0.00 3.16
2706 4361 4.954202 AGATCATAACTGGGTCGTCAAGTA 59.046 41.667 0.00 0.00 0.00 2.24
2707 4362 5.598830 AGATCATAACTGGGTCGTCAAGTAT 59.401 40.000 0.00 0.00 0.00 2.12
2708 4363 5.670792 TCATAACTGGGTCGTCAAGTATT 57.329 39.130 0.00 0.00 0.00 1.89
2709 4364 6.778834 TCATAACTGGGTCGTCAAGTATTA 57.221 37.500 0.00 0.00 0.00 0.98
2710 4365 6.567050 TCATAACTGGGTCGTCAAGTATTAC 58.433 40.000 0.00 0.00 0.00 1.89
2711 4366 3.881937 ACTGGGTCGTCAAGTATTACC 57.118 47.619 0.00 0.00 0.00 2.85
2716 4371 4.934075 GGTCGTCAAGTATTACCCAAAC 57.066 45.455 0.00 0.00 0.00 2.93
2717 4372 4.317488 GGTCGTCAAGTATTACCCAAACA 58.683 43.478 0.00 0.00 0.00 2.83
2718 4373 4.390909 GGTCGTCAAGTATTACCCAAACAG 59.609 45.833 0.00 0.00 0.00 3.16
2719 4374 3.998341 TCGTCAAGTATTACCCAAACAGC 59.002 43.478 0.00 0.00 0.00 4.40
2720 4375 3.749088 CGTCAAGTATTACCCAAACAGCA 59.251 43.478 0.00 0.00 0.00 4.41
2721 4376 4.214545 CGTCAAGTATTACCCAAACAGCAA 59.785 41.667 0.00 0.00 0.00 3.91
2722 4377 5.106317 CGTCAAGTATTACCCAAACAGCAAT 60.106 40.000 0.00 0.00 0.00 3.56
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
147 148 0.815734 GCAGGCGTAGTCCTTGTCTA 59.184 55.000 0.00 0.00 32.02 2.59
209 210 2.268920 GGCGATGCACCTCCAGAA 59.731 61.111 0.00 0.00 0.00 3.02
260 261 3.897122 GGTTCAGGGGTGTGGGCA 61.897 66.667 0.00 0.00 0.00 5.36
464 467 2.504244 CGCCTCCTCGAACGTGTC 60.504 66.667 0.00 0.00 0.00 3.67
569 572 4.838152 GATCGCCTGCTTGCCCGA 62.838 66.667 0.00 3.50 0.00 5.14
628 631 1.795768 GCCTTGTGTTGACGATCTCA 58.204 50.000 0.00 0.00 0.00 3.27
694 698 0.106149 ACCGGAGCAAAGACTTCGTT 59.894 50.000 9.46 0.00 36.92 3.85
864 868 3.430556 GTCGAAGCACTTTCTCTTCTTCC 59.569 47.826 0.00 0.00 37.22 3.46
895 899 2.052690 GGCAGAGCCCGTACAGAGA 61.053 63.158 0.00 0.00 44.06 3.10
936 940 1.506718 CAGCGTCTCGTCCAGCTTA 59.493 57.895 0.00 0.00 37.94 3.09
1014 1018 1.138459 CAGCATCAGTCGCTCGTCT 59.862 57.895 0.00 0.00 37.72 4.18
1023 1027 1.517832 GTAGACGCCCAGCATCAGT 59.482 57.895 0.00 0.00 0.00 3.41
1167 1171 0.034476 TGATCGCATCATCTCCCTGC 59.966 55.000 0.00 0.00 33.59 4.85
1236 1240 1.530013 GCACTGGATTGCAGCCTGTT 61.530 55.000 14.69 2.34 42.49 3.16
1306 1310 2.067013 GTAGAGTTTTCTGTCCACCGC 58.933 52.381 0.00 0.00 34.79 5.68
1389 1393 0.534203 TGAACCTGCTCACGAAACCC 60.534 55.000 0.00 0.00 0.00 4.11
1398 1402 1.817099 CGCCTCCATGAACCTGCTC 60.817 63.158 0.00 0.00 0.00 4.26
1538 1542 1.134367 CAACATCTCCGGCGAAGTCTA 59.866 52.381 9.30 0.00 0.00 2.59
1561 1565 0.824109 CCGGATGTGCTCTTCCTGTA 59.176 55.000 16.09 0.00 36.23 2.74
1803 3399 1.510623 CGCGTCTTGATGTGCTTGC 60.511 57.895 0.00 0.00 0.00 4.01
1814 3410 2.673368 GGATGAAGTGAAATCGCGTCTT 59.327 45.455 5.77 0.00 36.18 3.01
1937 3533 2.046507 CAGCTTCTCCCGCAGCTT 60.047 61.111 0.00 0.00 44.28 3.74
1985 3581 4.269603 CAGCTGATTAACTGACAATCTCCG 59.730 45.833 8.42 0.00 35.90 4.63
2017 3616 6.377429 ACCTATATCTGTCGAAACTGAAGACA 59.623 38.462 0.00 0.00 41.90 3.41
2020 3621 6.565234 ACACCTATATCTGTCGAAACTGAAG 58.435 40.000 0.00 0.00 36.98 3.02
2047 3648 3.707793 ACGAAACTGACAGAGACTGAAC 58.292 45.455 10.08 0.91 35.18 3.18
2319 3955 0.237235 GAAGATGTTTTGTGCCGCGA 59.763 50.000 8.23 0.00 0.00 5.87
2375 4030 1.802636 GCGCTCTGCCATTTTGCTA 59.197 52.632 0.00 0.00 37.76 3.49
2381 4036 4.393155 TGTCCGCGCTCTGCCATT 62.393 61.111 5.56 0.00 42.08 3.16
2392 4047 4.166011 GTTGCATCGCCTGTCCGC 62.166 66.667 0.00 0.00 0.00 5.54
2393 4048 1.647545 AATGTTGCATCGCCTGTCCG 61.648 55.000 0.00 0.00 0.00 4.79
2394 4049 1.378531 TAATGTTGCATCGCCTGTCC 58.621 50.000 0.00 0.00 0.00 4.02
2395 4050 2.785679 GTTAATGTTGCATCGCCTGTC 58.214 47.619 0.00 0.00 0.00 3.51
2396 4051 1.130373 CGTTAATGTTGCATCGCCTGT 59.870 47.619 0.00 0.00 0.00 4.00
2397 4052 1.396648 TCGTTAATGTTGCATCGCCTG 59.603 47.619 0.00 0.00 0.00 4.85
2398 4053 1.396996 GTCGTTAATGTTGCATCGCCT 59.603 47.619 0.00 0.00 0.00 5.52
2399 4054 1.810197 GTCGTTAATGTTGCATCGCC 58.190 50.000 0.00 0.00 0.00 5.54
2400 4055 1.201877 ACGTCGTTAATGTTGCATCGC 60.202 47.619 0.00 0.00 0.00 4.58
2401 4056 2.344441 AGACGTCGTTAATGTTGCATCG 59.656 45.455 10.46 0.00 0.00 3.84
2402 4057 3.241995 GGAGACGTCGTTAATGTTGCATC 60.242 47.826 10.46 0.00 0.00 3.91
2403 4058 2.671396 GGAGACGTCGTTAATGTTGCAT 59.329 45.455 10.46 0.00 0.00 3.96
2404 4059 2.063266 GGAGACGTCGTTAATGTTGCA 58.937 47.619 10.46 0.00 0.00 4.08
2405 4060 2.063266 TGGAGACGTCGTTAATGTTGC 58.937 47.619 10.46 0.00 0.00 4.17
2406 4061 2.090041 CGTGGAGACGTCGTTAATGTTG 59.910 50.000 10.46 0.00 40.91 3.33
2407 4062 2.322161 CGTGGAGACGTCGTTAATGTT 58.678 47.619 10.46 0.00 40.91 2.71
2408 4063 1.973138 CGTGGAGACGTCGTTAATGT 58.027 50.000 10.46 0.00 40.91 2.71
2419 4074 2.056577 CGTTTACCTTCACGTGGAGAC 58.943 52.381 25.91 13.87 0.00 3.36
2420 4075 1.955778 TCGTTTACCTTCACGTGGAGA 59.044 47.619 25.91 2.87 37.66 3.71
2421 4076 2.325761 CTCGTTTACCTTCACGTGGAG 58.674 52.381 17.51 17.51 37.66 3.86
2422 4077 2.427232 CTCGTTTACCTTCACGTGGA 57.573 50.000 17.00 5.89 37.66 4.02
2423 4078 1.425412 CCTCGTTTACCTTCACGTGG 58.575 55.000 17.00 1.58 41.95 4.94
2424 4079 0.788391 GCCTCGTTTACCTTCACGTG 59.212 55.000 9.94 9.94 37.66 4.49
2425 4080 0.677842 AGCCTCGTTTACCTTCACGT 59.322 50.000 0.00 0.00 37.66 4.49
2426 4081 2.094854 AGTAGCCTCGTTTACCTTCACG 60.095 50.000 0.00 0.00 37.77 4.35
2427 4082 3.589495 AGTAGCCTCGTTTACCTTCAC 57.411 47.619 0.00 0.00 0.00 3.18
2428 4083 4.081406 TGTAGTAGCCTCGTTTACCTTCA 58.919 43.478 0.00 0.00 0.00 3.02
2429 4084 4.082571 TGTGTAGTAGCCTCGTTTACCTTC 60.083 45.833 0.00 0.00 0.00 3.46
2430 4085 3.828451 TGTGTAGTAGCCTCGTTTACCTT 59.172 43.478 0.00 0.00 0.00 3.50
2431 4086 3.424703 TGTGTAGTAGCCTCGTTTACCT 58.575 45.455 0.00 0.00 0.00 3.08
2432 4087 3.855689 TGTGTAGTAGCCTCGTTTACC 57.144 47.619 0.00 0.00 0.00 2.85
2433 4088 4.802999 ACTTGTGTAGTAGCCTCGTTTAC 58.197 43.478 0.00 0.00 34.56 2.01
2434 4089 5.458041 AACTTGTGTAGTAGCCTCGTTTA 57.542 39.130 0.00 0.00 35.54 2.01
2435 4090 4.304939 GAACTTGTGTAGTAGCCTCGTTT 58.695 43.478 0.00 0.00 35.54 3.60
2436 4091 3.305881 GGAACTTGTGTAGTAGCCTCGTT 60.306 47.826 0.00 0.00 35.54 3.85
2437 4092 2.230750 GGAACTTGTGTAGTAGCCTCGT 59.769 50.000 0.00 0.00 35.54 4.18
2438 4093 2.731341 CGGAACTTGTGTAGTAGCCTCG 60.731 54.545 0.00 0.00 35.54 4.63
2439 4094 2.490903 TCGGAACTTGTGTAGTAGCCTC 59.509 50.000 0.00 0.00 35.54 4.70
2440 4095 2.522185 TCGGAACTTGTGTAGTAGCCT 58.478 47.619 0.00 0.00 35.54 4.58
2441 4096 3.521947 ATCGGAACTTGTGTAGTAGCC 57.478 47.619 0.00 0.00 35.54 3.93
2442 4097 5.857822 AAAATCGGAACTTGTGTAGTAGC 57.142 39.130 0.00 0.00 35.54 3.58
2443 4098 7.653767 AGAAAAATCGGAACTTGTGTAGTAG 57.346 36.000 0.00 0.00 35.54 2.57
2444 4099 8.441312 AAAGAAAAATCGGAACTTGTGTAGTA 57.559 30.769 0.00 0.00 35.54 1.82
2445 4100 6.937436 AAGAAAAATCGGAACTTGTGTAGT 57.063 33.333 0.00 0.00 39.32 2.73
2446 4101 7.587757 CAGAAAGAAAAATCGGAACTTGTGTAG 59.412 37.037 0.00 0.00 0.00 2.74
2447 4102 7.281324 TCAGAAAGAAAAATCGGAACTTGTGTA 59.719 33.333 0.00 0.00 0.00 2.90
2448 4103 6.094881 TCAGAAAGAAAAATCGGAACTTGTGT 59.905 34.615 0.00 0.00 0.00 3.72
2449 4104 6.494842 TCAGAAAGAAAAATCGGAACTTGTG 58.505 36.000 0.00 0.00 0.00 3.33
2450 4105 6.693315 TCAGAAAGAAAAATCGGAACTTGT 57.307 33.333 0.00 0.00 0.00 3.16
2451 4106 7.649306 ACATTCAGAAAGAAAAATCGGAACTTG 59.351 33.333 0.00 0.00 40.22 3.16
2452 4107 7.649306 CACATTCAGAAAGAAAAATCGGAACTT 59.351 33.333 0.00 0.00 40.22 2.66
2453 4108 7.013274 TCACATTCAGAAAGAAAAATCGGAACT 59.987 33.333 0.00 0.00 40.22 3.01
2454 4109 7.138736 TCACATTCAGAAAGAAAAATCGGAAC 58.861 34.615 0.00 0.00 40.22 3.62
2455 4110 7.270757 TCACATTCAGAAAGAAAAATCGGAA 57.729 32.000 0.00 0.00 40.22 4.30
2456 4111 6.875948 TCACATTCAGAAAGAAAAATCGGA 57.124 33.333 0.00 0.00 40.22 4.55
2457 4112 6.917477 TGTTCACATTCAGAAAGAAAAATCGG 59.083 34.615 0.00 0.00 40.22 4.18
2458 4113 7.857389 TCTGTTCACATTCAGAAAGAAAAATCG 59.143 33.333 0.00 0.00 40.22 3.34
2459 4114 9.178427 CTCTGTTCACATTCAGAAAGAAAAATC 57.822 33.333 0.00 0.00 40.22 2.17
2460 4115 8.139989 CCTCTGTTCACATTCAGAAAGAAAAAT 58.860 33.333 0.00 0.00 40.22 1.82
2461 4116 7.483307 CCTCTGTTCACATTCAGAAAGAAAAA 58.517 34.615 0.00 0.00 40.22 1.94
2462 4117 6.460123 GCCTCTGTTCACATTCAGAAAGAAAA 60.460 38.462 0.00 0.00 40.22 2.29
2463 4118 5.009010 GCCTCTGTTCACATTCAGAAAGAAA 59.991 40.000 0.00 0.00 40.22 2.52
2464 4119 4.516698 GCCTCTGTTCACATTCAGAAAGAA 59.483 41.667 0.00 0.00 39.67 2.52
2465 4120 4.067896 GCCTCTGTTCACATTCAGAAAGA 58.932 43.478 0.00 0.00 39.67 2.52
2466 4121 3.817084 TGCCTCTGTTCACATTCAGAAAG 59.183 43.478 0.00 0.00 39.67 2.62
2467 4122 3.817084 CTGCCTCTGTTCACATTCAGAAA 59.183 43.478 0.00 0.00 39.67 2.52
2468 4123 3.181451 ACTGCCTCTGTTCACATTCAGAA 60.181 43.478 0.00 0.00 39.67 3.02
2469 4124 2.369860 ACTGCCTCTGTTCACATTCAGA 59.630 45.455 0.00 0.00 38.20 3.27
2470 4125 2.740981 GACTGCCTCTGTTCACATTCAG 59.259 50.000 0.00 0.00 0.00 3.02
2471 4126 2.771089 GACTGCCTCTGTTCACATTCA 58.229 47.619 0.00 0.00 0.00 2.57
2472 4127 1.728971 CGACTGCCTCTGTTCACATTC 59.271 52.381 0.00 0.00 0.00 2.67
2473 4128 1.070758 ACGACTGCCTCTGTTCACATT 59.929 47.619 0.00 0.00 0.00 2.71
2474 4129 0.681733 ACGACTGCCTCTGTTCACAT 59.318 50.000 0.00 0.00 0.00 3.21
2475 4130 0.032130 GACGACTGCCTCTGTTCACA 59.968 55.000 0.00 0.00 0.00 3.58
2476 4131 0.315568 AGACGACTGCCTCTGTTCAC 59.684 55.000 0.00 0.00 0.00 3.18
2477 4132 1.000163 GAAGACGACTGCCTCTGTTCA 60.000 52.381 0.00 0.00 0.00 3.18
2478 4133 1.670380 GGAAGACGACTGCCTCTGTTC 60.670 57.143 4.45 0.00 38.77 3.18
2479 4134 0.318762 GGAAGACGACTGCCTCTGTT 59.681 55.000 4.45 0.00 38.77 3.16
2480 4135 0.827925 TGGAAGACGACTGCCTCTGT 60.828 55.000 13.33 0.00 42.30 3.41
2481 4136 0.389166 GTGGAAGACGACTGCCTCTG 60.389 60.000 13.33 0.00 42.30 3.35
2482 4137 0.540830 AGTGGAAGACGACTGCCTCT 60.541 55.000 13.33 11.73 42.30 3.69
2483 4138 0.109039 GAGTGGAAGACGACTGCCTC 60.109 60.000 13.33 9.53 42.30 4.70
2484 4139 1.536943 GGAGTGGAAGACGACTGCCT 61.537 60.000 13.33 0.00 42.30 4.75
2485 4140 1.079750 GGAGTGGAAGACGACTGCC 60.080 63.158 4.77 4.77 42.15 4.85
2486 4141 0.318762 AAGGAGTGGAAGACGACTGC 59.681 55.000 0.00 0.00 41.68 4.40
2487 4142 1.067495 GGAAGGAGTGGAAGACGACTG 60.067 57.143 0.00 0.00 35.34 3.51
2488 4143 1.258676 GGAAGGAGTGGAAGACGACT 58.741 55.000 0.00 0.00 37.76 4.18
2489 4144 0.966920 TGGAAGGAGTGGAAGACGAC 59.033 55.000 0.00 0.00 0.00 4.34
2490 4145 1.712056 TTGGAAGGAGTGGAAGACGA 58.288 50.000 0.00 0.00 0.00 4.20
2491 4146 2.234908 AGATTGGAAGGAGTGGAAGACG 59.765 50.000 0.00 0.00 0.00 4.18
2492 4147 3.990959 AGATTGGAAGGAGTGGAAGAC 57.009 47.619 0.00 0.00 0.00 3.01
2493 4148 3.560025 GCAAGATTGGAAGGAGTGGAAGA 60.560 47.826 0.00 0.00 0.00 2.87
2494 4149 2.751806 GCAAGATTGGAAGGAGTGGAAG 59.248 50.000 0.00 0.00 0.00 3.46
2495 4150 2.376518 AGCAAGATTGGAAGGAGTGGAA 59.623 45.455 0.00 0.00 0.00 3.53
2496 4151 1.988107 AGCAAGATTGGAAGGAGTGGA 59.012 47.619 0.00 0.00 0.00 4.02
2497 4152 2.503895 AGCAAGATTGGAAGGAGTGG 57.496 50.000 0.00 0.00 0.00 4.00
2498 4153 3.054802 AGGTAGCAAGATTGGAAGGAGTG 60.055 47.826 0.00 0.00 0.00 3.51
2499 4154 3.185455 AGGTAGCAAGATTGGAAGGAGT 58.815 45.455 0.00 0.00 0.00 3.85
2500 4155 3.198635 TGAGGTAGCAAGATTGGAAGGAG 59.801 47.826 0.00 0.00 0.00 3.69
2501 4156 3.181329 TGAGGTAGCAAGATTGGAAGGA 58.819 45.455 0.00 0.00 0.00 3.36
2502 4157 3.539604 CTGAGGTAGCAAGATTGGAAGG 58.460 50.000 0.00 0.00 0.00 3.46
2515 4170 2.125106 GGCGTTGGGCTGAGGTAG 60.125 66.667 0.00 0.00 42.94 3.18
2516 4171 2.925706 TGGCGTTGGGCTGAGGTA 60.926 61.111 0.00 0.00 42.94 3.08
2517 4172 4.335647 CTGGCGTTGGGCTGAGGT 62.336 66.667 0.00 0.00 42.94 3.85
2518 4173 2.826777 ATTCTGGCGTTGGGCTGAGG 62.827 60.000 0.00 0.00 45.10 3.86
2519 4174 0.962356 AATTCTGGCGTTGGGCTGAG 60.962 55.000 0.00 0.00 45.10 3.35
2520 4175 0.326595 TAATTCTGGCGTTGGGCTGA 59.673 50.000 0.00 0.00 43.33 4.26
2521 4176 1.173043 TTAATTCTGGCGTTGGGCTG 58.827 50.000 0.00 0.00 42.94 4.85
2522 4177 1.750778 CATTAATTCTGGCGTTGGGCT 59.249 47.619 0.00 0.00 42.94 5.19
2523 4178 1.802508 GCATTAATTCTGGCGTTGGGC 60.803 52.381 0.00 0.00 42.51 5.36
2524 4179 1.202405 GGCATTAATTCTGGCGTTGGG 60.202 52.381 0.00 0.00 0.00 4.12
2525 4180 2.208326 GGCATTAATTCTGGCGTTGG 57.792 50.000 0.00 0.00 0.00 3.77
2530 4185 1.597937 CGCTTCGGCATTAATTCTGGC 60.598 52.381 4.85 4.85 41.88 4.85
2531 4186 1.670811 ACGCTTCGGCATTAATTCTGG 59.329 47.619 0.00 0.00 41.88 3.86
2532 4187 2.597505 CGACGCTTCGGCATTAATTCTG 60.598 50.000 4.41 0.00 41.89 3.02
2533 4188 1.593006 CGACGCTTCGGCATTAATTCT 59.407 47.619 4.41 0.00 41.89 2.40
2534 4189 2.005188 CGACGCTTCGGCATTAATTC 57.995 50.000 4.41 0.00 41.89 2.17
2544 4199 1.773496 GTGACTTTCCGACGCTTCG 59.227 57.895 5.49 5.49 45.44 3.79
2545 4200 0.938168 ACGTGACTTTCCGACGCTTC 60.938 55.000 0.00 0.00 36.56 3.86
2546 4201 0.938168 GACGTGACTTTCCGACGCTT 60.938 55.000 0.00 0.00 36.56 4.68
2547 4202 1.371389 GACGTGACTTTCCGACGCT 60.371 57.895 0.00 0.00 36.56 5.07
2548 4203 2.370393 GGACGTGACTTTCCGACGC 61.370 63.158 0.00 0.00 36.56 5.19
2549 4204 3.838468 GGACGTGACTTTCCGACG 58.162 61.111 0.00 0.00 39.03 5.12
2553 4208 0.953960 AATGGCGGACGTGACTTTCC 60.954 55.000 0.00 0.00 0.00 3.13
2554 4209 0.165944 CAATGGCGGACGTGACTTTC 59.834 55.000 0.00 0.00 0.00 2.62
2555 4210 0.534203 ACAATGGCGGACGTGACTTT 60.534 50.000 0.00 0.00 0.00 2.66
2556 4211 0.319083 TACAATGGCGGACGTGACTT 59.681 50.000 0.00 0.00 0.00 3.01
2557 4212 0.108804 CTACAATGGCGGACGTGACT 60.109 55.000 0.00 0.00 0.00 3.41
2558 4213 1.693083 GCTACAATGGCGGACGTGAC 61.693 60.000 0.00 0.00 0.00 3.67
2559 4214 1.447140 GCTACAATGGCGGACGTGA 60.447 57.895 0.00 0.00 0.00 4.35
2560 4215 1.447838 AGCTACAATGGCGGACGTG 60.448 57.895 0.00 0.00 34.52 4.49
2561 4216 1.447838 CAGCTACAATGGCGGACGT 60.448 57.895 0.00 0.00 34.52 4.34
2562 4217 0.739462 TTCAGCTACAATGGCGGACG 60.739 55.000 0.00 0.00 34.08 4.79
2563 4218 1.009829 CTTCAGCTACAATGGCGGAC 58.990 55.000 0.00 0.00 34.08 4.79
2564 4219 0.901827 TCTTCAGCTACAATGGCGGA 59.098 50.000 0.00 0.00 34.52 5.54
2565 4220 1.667724 CTTCTTCAGCTACAATGGCGG 59.332 52.381 0.00 0.00 34.52 6.13
2566 4221 2.606725 CTCTTCTTCAGCTACAATGGCG 59.393 50.000 0.00 0.00 34.52 5.69
2567 4222 3.866651 TCTCTTCTTCAGCTACAATGGC 58.133 45.455 0.00 0.00 0.00 4.40
2568 4223 5.336150 TCTCTCTTCTTCAGCTACAATGG 57.664 43.478 0.00 0.00 0.00 3.16
2569 4224 5.811613 CCTTCTCTCTTCTTCAGCTACAATG 59.188 44.000 0.00 0.00 0.00 2.82
2570 4225 5.719085 TCCTTCTCTCTTCTTCAGCTACAAT 59.281 40.000 0.00 0.00 0.00 2.71
2571 4226 5.047660 GTCCTTCTCTCTTCTTCAGCTACAA 60.048 44.000 0.00 0.00 0.00 2.41
2572 4227 4.461081 GTCCTTCTCTCTTCTTCAGCTACA 59.539 45.833 0.00 0.00 0.00 2.74
2573 4228 4.438200 CGTCCTTCTCTCTTCTTCAGCTAC 60.438 50.000 0.00 0.00 0.00 3.58
2574 4229 3.692101 CGTCCTTCTCTCTTCTTCAGCTA 59.308 47.826 0.00 0.00 0.00 3.32
2575 4230 2.491693 CGTCCTTCTCTCTTCTTCAGCT 59.508 50.000 0.00 0.00 0.00 4.24
2576 4231 2.874849 CGTCCTTCTCTCTTCTTCAGC 58.125 52.381 0.00 0.00 0.00 4.26
2577 4232 2.230025 TGCGTCCTTCTCTCTTCTTCAG 59.770 50.000 0.00 0.00 0.00 3.02
2578 4233 2.029828 GTGCGTCCTTCTCTCTTCTTCA 60.030 50.000 0.00 0.00 0.00 3.02
2579 4234 2.601804 GTGCGTCCTTCTCTCTTCTTC 58.398 52.381 0.00 0.00 0.00 2.87
2580 4235 1.068194 CGTGCGTCCTTCTCTCTTCTT 60.068 52.381 0.00 0.00 0.00 2.52
2581 4236 0.523966 CGTGCGTCCTTCTCTCTTCT 59.476 55.000 0.00 0.00 0.00 2.85
2582 4237 0.241481 ACGTGCGTCCTTCTCTCTTC 59.759 55.000 0.00 0.00 0.00 2.87
2583 4238 0.039074 CACGTGCGTCCTTCTCTCTT 60.039 55.000 0.82 0.00 0.00 2.85
2584 4239 0.889638 TCACGTGCGTCCTTCTCTCT 60.890 55.000 11.67 0.00 0.00 3.10
2585 4240 0.171455 ATCACGTGCGTCCTTCTCTC 59.829 55.000 11.67 0.00 0.00 3.20
2586 4241 0.171455 GATCACGTGCGTCCTTCTCT 59.829 55.000 11.67 0.00 0.00 3.10
2587 4242 0.109272 TGATCACGTGCGTCCTTCTC 60.109 55.000 11.67 0.00 0.00 2.87
2588 4243 0.317160 TTGATCACGTGCGTCCTTCT 59.683 50.000 11.67 0.00 0.00 2.85
2589 4244 0.438830 GTTGATCACGTGCGTCCTTC 59.561 55.000 11.67 1.46 0.00 3.46
2590 4245 0.249699 TGTTGATCACGTGCGTCCTT 60.250 50.000 11.67 0.00 0.00 3.36
2591 4246 0.037326 ATGTTGATCACGTGCGTCCT 60.037 50.000 11.67 0.00 0.00 3.85
2592 4247 1.588404 CTATGTTGATCACGTGCGTCC 59.412 52.381 11.67 0.00 0.00 4.79
2593 4248 2.526077 TCTATGTTGATCACGTGCGTC 58.474 47.619 11.67 11.99 0.00 5.19
2594 4249 2.647529 TCTATGTTGATCACGTGCGT 57.352 45.000 11.67 1.12 0.00 5.24
2595 4250 2.219445 CCATCTATGTTGATCACGTGCG 59.781 50.000 11.67 0.00 0.00 5.34
2596 4251 2.545526 CCCATCTATGTTGATCACGTGC 59.454 50.000 11.67 0.00 0.00 5.34
2597 4252 3.797039 ACCCATCTATGTTGATCACGTG 58.203 45.455 9.94 9.94 0.00 4.49
2598 4253 4.649674 AGTACCCATCTATGTTGATCACGT 59.350 41.667 0.00 0.00 0.00 4.49
2599 4254 5.201713 AGTACCCATCTATGTTGATCACG 57.798 43.478 0.00 0.00 0.00 4.35
2600 4255 6.161855 TGAGTACCCATCTATGTTGATCAC 57.838 41.667 0.00 0.00 0.00 3.06
2601 4256 6.611236 TCTTGAGTACCCATCTATGTTGATCA 59.389 38.462 0.00 0.00 0.00 2.92
2602 4257 7.055667 TCTTGAGTACCCATCTATGTTGATC 57.944 40.000 0.00 0.00 0.00 2.92
2603 4258 7.275920 GTTCTTGAGTACCCATCTATGTTGAT 58.724 38.462 0.00 0.00 0.00 2.57
2604 4259 6.351881 GGTTCTTGAGTACCCATCTATGTTGA 60.352 42.308 0.00 0.00 30.30 3.18
2605 4260 5.817816 GGTTCTTGAGTACCCATCTATGTTG 59.182 44.000 0.00 0.00 30.30 3.33
2606 4261 5.487488 TGGTTCTTGAGTACCCATCTATGTT 59.513 40.000 4.61 0.00 34.96 2.71
2607 4262 5.030147 TGGTTCTTGAGTACCCATCTATGT 58.970 41.667 4.61 0.00 34.96 2.29
2608 4263 5.614324 TGGTTCTTGAGTACCCATCTATG 57.386 43.478 4.61 0.00 34.96 2.23
2609 4264 5.131142 CCTTGGTTCTTGAGTACCCATCTAT 59.869 44.000 4.61 0.00 34.96 1.98
2610 4265 4.469945 CCTTGGTTCTTGAGTACCCATCTA 59.530 45.833 4.61 0.00 34.96 1.98
2611 4266 3.264450 CCTTGGTTCTTGAGTACCCATCT 59.736 47.826 4.61 0.00 34.96 2.90
2612 4267 3.263425 TCCTTGGTTCTTGAGTACCCATC 59.737 47.826 4.61 0.00 34.96 3.51
2613 4268 3.256704 TCCTTGGTTCTTGAGTACCCAT 58.743 45.455 4.61 0.00 34.96 4.00
2614 4269 2.637872 CTCCTTGGTTCTTGAGTACCCA 59.362 50.000 4.61 0.00 34.96 4.51
2615 4270 2.615747 GCTCCTTGGTTCTTGAGTACCC 60.616 54.545 4.61 0.00 34.96 3.69
2616 4271 2.303311 AGCTCCTTGGTTCTTGAGTACC 59.697 50.000 0.31 0.31 36.21 3.34
2617 4272 3.330267 CAGCTCCTTGGTTCTTGAGTAC 58.670 50.000 0.00 0.00 0.00 2.73
2618 4273 2.289694 GCAGCTCCTTGGTTCTTGAGTA 60.290 50.000 0.00 0.00 0.00 2.59
2619 4274 1.544314 GCAGCTCCTTGGTTCTTGAGT 60.544 52.381 0.00 0.00 0.00 3.41
2620 4275 1.163554 GCAGCTCCTTGGTTCTTGAG 58.836 55.000 0.00 0.00 0.00 3.02
2621 4276 0.767375 AGCAGCTCCTTGGTTCTTGA 59.233 50.000 0.00 0.00 0.00 3.02
2622 4277 1.163554 GAGCAGCTCCTTGGTTCTTG 58.836 55.000 11.84 0.00 0.00 3.02
2623 4278 0.767375 TGAGCAGCTCCTTGGTTCTT 59.233 50.000 20.16 0.00 0.00 2.52
2624 4279 0.767375 TTGAGCAGCTCCTTGGTTCT 59.233 50.000 20.16 0.00 0.00 3.01
2625 4280 1.163554 CTTGAGCAGCTCCTTGGTTC 58.836 55.000 20.16 0.00 0.00 3.62
2626 4281 0.251077 CCTTGAGCAGCTCCTTGGTT 60.251 55.000 20.16 0.00 0.00 3.67
2627 4282 1.377994 CCTTGAGCAGCTCCTTGGT 59.622 57.895 20.16 0.00 0.00 3.67
2628 4283 0.676151 GACCTTGAGCAGCTCCTTGG 60.676 60.000 20.16 19.14 0.00 3.61
2629 4284 1.018226 CGACCTTGAGCAGCTCCTTG 61.018 60.000 20.16 9.96 0.00 3.61
2630 4285 1.294780 CGACCTTGAGCAGCTCCTT 59.705 57.895 20.16 0.83 0.00 3.36
2631 4286 2.654079 CCGACCTTGAGCAGCTCCT 61.654 63.158 20.16 0.00 0.00 3.69
2632 4287 2.125350 CCGACCTTGAGCAGCTCC 60.125 66.667 20.16 2.72 0.00 4.70
2633 4288 2.817396 GCCGACCTTGAGCAGCTC 60.817 66.667 16.21 16.21 0.00 4.09
2634 4289 4.749310 CGCCGACCTTGAGCAGCT 62.749 66.667 0.00 0.00 0.00 4.24
2635 4290 4.742201 TCGCCGACCTTGAGCAGC 62.742 66.667 0.00 0.00 0.00 5.25
2636 4291 2.811317 GTCGCCGACCTTGAGCAG 60.811 66.667 5.81 0.00 0.00 4.24
2637 4292 3.303135 AGTCGCCGACCTTGAGCA 61.303 61.111 14.60 0.00 32.18 4.26
2638 4293 2.209064 TACAGTCGCCGACCTTGAGC 62.209 60.000 14.60 0.00 32.18 4.26
2639 4294 0.456312 GTACAGTCGCCGACCTTGAG 60.456 60.000 14.60 1.79 32.18 3.02
2640 4295 1.582968 GTACAGTCGCCGACCTTGA 59.417 57.895 14.60 0.00 32.18 3.02
2641 4296 1.445582 GGTACAGTCGCCGACCTTG 60.446 63.158 14.60 9.32 32.18 3.61
2642 4297 1.904865 TGGTACAGTCGCCGACCTT 60.905 57.895 14.60 3.35 32.18 3.50
2643 4298 2.282674 TGGTACAGTCGCCGACCT 60.283 61.111 14.60 1.63 32.18 3.85
2644 4299 2.126189 GTGGTACAGTCGCCGACC 60.126 66.667 14.60 0.00 41.80 4.79
2645 4300 0.801067 GATGTGGTACAGTCGCCGAC 60.801 60.000 9.71 9.71 41.80 4.79
2646 4301 1.509463 GATGTGGTACAGTCGCCGA 59.491 57.895 0.00 0.00 41.80 5.54
2647 4302 1.518572 GGATGTGGTACAGTCGCCG 60.519 63.158 0.00 0.00 41.80 6.46
2648 4303 0.178068 ATGGATGTGGTACAGTCGCC 59.822 55.000 0.00 0.00 41.80 5.54
2649 4304 1.571919 GATGGATGTGGTACAGTCGC 58.428 55.000 0.00 0.00 41.80 5.19
2650 4305 1.202533 GGGATGGATGTGGTACAGTCG 60.203 57.143 0.00 0.00 41.80 4.18
2651 4306 2.119495 AGGGATGGATGTGGTACAGTC 58.881 52.381 0.00 0.00 41.80 3.51
2652 4307 2.270434 AGGGATGGATGTGGTACAGT 57.730 50.000 0.00 0.00 41.80 3.55
2653 4308 3.054434 TGAAAGGGATGGATGTGGTACAG 60.054 47.826 0.00 0.00 41.80 2.74
2654 4309 2.916269 TGAAAGGGATGGATGTGGTACA 59.084 45.455 0.00 0.00 0.00 2.90
2655 4310 3.644966 TGAAAGGGATGGATGTGGTAC 57.355 47.619 0.00 0.00 0.00 3.34
2656 4311 3.117550 CCATGAAAGGGATGGATGTGGTA 60.118 47.826 0.00 0.00 43.46 3.25
2657 4312 2.358510 CCATGAAAGGGATGGATGTGGT 60.359 50.000 0.00 0.00 43.46 4.16
2658 4313 2.313317 CCATGAAAGGGATGGATGTGG 58.687 52.381 0.00 0.00 43.46 4.17
2659 4314 2.691526 CACCATGAAAGGGATGGATGTG 59.308 50.000 5.78 0.00 43.46 3.21
2660 4315 2.358510 CCACCATGAAAGGGATGGATGT 60.359 50.000 5.78 0.00 43.46 3.06
2661 4316 2.313317 CCACCATGAAAGGGATGGATG 58.687 52.381 5.78 1.26 43.46 3.51
2662 4317 1.218704 CCCACCATGAAAGGGATGGAT 59.781 52.381 10.54 0.00 43.46 3.41
2663 4318 0.630673 CCCACCATGAAAGGGATGGA 59.369 55.000 10.54 0.00 43.46 3.41
2664 4319 0.630673 TCCCACCATGAAAGGGATGG 59.369 55.000 13.70 0.00 43.46 3.51
2667 4322 1.846439 GATCTCCCACCATGAAAGGGA 59.154 52.381 15.96 15.96 43.46 4.20
2669 4324 3.589951 ATGATCTCCCACCATGAAAGG 57.410 47.619 0.00 0.00 0.00 3.11
2670 4325 5.530171 CAGTTATGATCTCCCACCATGAAAG 59.470 44.000 0.00 0.00 0.00 2.62
2671 4326 5.439721 CAGTTATGATCTCCCACCATGAAA 58.560 41.667 0.00 0.00 0.00 2.69
2672 4327 4.141413 CCAGTTATGATCTCCCACCATGAA 60.141 45.833 0.00 0.00 0.00 2.57
2673 4328 3.392285 CCAGTTATGATCTCCCACCATGA 59.608 47.826 0.00 0.00 0.00 3.07
2674 4329 3.497405 CCCAGTTATGATCTCCCACCATG 60.497 52.174 0.00 0.00 0.00 3.66
2675 4330 2.713167 CCCAGTTATGATCTCCCACCAT 59.287 50.000 0.00 0.00 0.00 3.55
2676 4331 2.126882 CCCAGTTATGATCTCCCACCA 58.873 52.381 0.00 0.00 0.00 4.17
2677 4332 2.104963 GACCCAGTTATGATCTCCCACC 59.895 54.545 0.00 0.00 0.00 4.61
2678 4333 2.224066 CGACCCAGTTATGATCTCCCAC 60.224 54.545 0.00 0.00 0.00 4.61
2679 4334 2.039418 CGACCCAGTTATGATCTCCCA 58.961 52.381 0.00 0.00 0.00 4.37
2680 4335 2.036089 GACGACCCAGTTATGATCTCCC 59.964 54.545 0.00 0.00 0.00 4.30
2681 4336 2.693591 TGACGACCCAGTTATGATCTCC 59.306 50.000 0.00 0.00 0.00 3.71
2682 4337 4.142138 ACTTGACGACCCAGTTATGATCTC 60.142 45.833 0.00 0.00 0.00 2.75
2683 4338 3.769844 ACTTGACGACCCAGTTATGATCT 59.230 43.478 0.00 0.00 0.00 2.75
2684 4339 4.124851 ACTTGACGACCCAGTTATGATC 57.875 45.455 0.00 0.00 0.00 2.92
2685 4340 5.871396 ATACTTGACGACCCAGTTATGAT 57.129 39.130 0.00 0.00 0.00 2.45
2686 4341 5.670792 AATACTTGACGACCCAGTTATGA 57.329 39.130 0.00 0.00 0.00 2.15
2687 4342 5.751990 GGTAATACTTGACGACCCAGTTATG 59.248 44.000 0.00 0.00 0.00 1.90
2688 4343 5.910614 GGTAATACTTGACGACCCAGTTAT 58.089 41.667 0.00 0.00 0.00 1.89
2689 4344 5.329035 GGTAATACTTGACGACCCAGTTA 57.671 43.478 0.00 0.00 0.00 2.24
2690 4345 4.198028 GGTAATACTTGACGACCCAGTT 57.802 45.455 0.00 0.00 0.00 3.16
2691 4346 3.881937 GGTAATACTTGACGACCCAGT 57.118 47.619 0.00 0.00 0.00 4.00
2695 4350 4.317488 TGTTTGGGTAATACTTGACGACC 58.683 43.478 0.00 0.00 0.00 4.79
2696 4351 4.142966 GCTGTTTGGGTAATACTTGACGAC 60.143 45.833 0.00 0.00 0.00 4.34
2697 4352 3.998341 GCTGTTTGGGTAATACTTGACGA 59.002 43.478 0.00 0.00 0.00 4.20
2698 4353 3.749088 TGCTGTTTGGGTAATACTTGACG 59.251 43.478 0.00 0.00 0.00 4.35
2699 4354 5.699097 TTGCTGTTTGGGTAATACTTGAC 57.301 39.130 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.