Multiple sequence alignment - TraesCS5D01G058000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G058000 chr5D 100.000 3200 0 0 1 3200 54783870 54787069 0.000000e+00 5910.0
1 TraesCS5D01G058000 chr5D 86.103 331 26 8 1649 1978 54720508 54720197 3.950000e-89 339.0
2 TraesCS5D01G058000 chr5D 95.652 69 3 0 2235 2303 54809912 54809980 9.380000e-21 111.0
3 TraesCS5D01G058000 chr5D 97.143 35 1 0 328 362 464292749 464292783 3.450000e-05 60.2
4 TraesCS5D01G058000 chr5D 97.059 34 0 1 322 354 542695574 542695607 4.460000e-04 56.5
5 TraesCS5D01G058000 chr5A 94.632 1304 47 7 704 1994 42696681 42695388 0.000000e+00 1999.0
6 TraesCS5D01G058000 chr5A 95.357 1163 42 1 844 1994 43253788 43252626 0.000000e+00 1838.0
7 TraesCS5D01G058000 chr5A 90.973 565 47 4 1 564 43489439 43488878 0.000000e+00 758.0
8 TraesCS5D01G058000 chr5A 87.278 676 55 15 2303 2958 20424408 20423744 0.000000e+00 743.0
9 TraesCS5D01G058000 chr5A 87.949 390 32 12 294 680 42698889 42698512 2.260000e-121 446.0
10 TraesCS5D01G058000 chr5A 90.323 310 27 3 1 307 42699375 42699066 1.380000e-108 403.0
11 TraesCS5D01G058000 chr5A 92.000 75 5 1 560 633 43406083 43406009 1.570000e-18 104.0
12 TraesCS5D01G058000 chr5A 90.278 72 7 0 2229 2300 374077356 374077427 9.450000e-16 95.3
13 TraesCS5D01G058000 chr5A 90.278 72 7 0 2229 2300 519531214 519531285 9.450000e-16 95.3
14 TraesCS5D01G058000 chr5B 94.224 1160 39 15 854 1995 57494821 57493672 0.000000e+00 1746.0
15 TraesCS5D01G058000 chr5B 94.286 105 4 2 704 807 57494931 57494828 3.300000e-35 159.0
16 TraesCS5D01G058000 chr5B 95.833 48 1 1 1 48 57495649 57495603 3.420000e-10 76.8
17 TraesCS5D01G058000 chr5B 94.595 37 2 0 326 362 600082239 600082203 1.240000e-04 58.4
18 TraesCS5D01G058000 chr2B 92.455 888 50 7 2328 3200 20650168 20649283 0.000000e+00 1253.0
19 TraesCS5D01G058000 chr2B 92.857 42 3 0 322 363 788544504 788544545 9.580000e-06 62.1
20 TraesCS5D01G058000 chr2D 97.790 543 12 0 2658 3200 72591106 72590564 0.000000e+00 937.0
21 TraesCS5D01G058000 chr2D 92.391 368 16 8 2303 2665 72591741 72591381 6.120000e-142 514.0
22 TraesCS5D01G058000 chr2D 80.142 141 26 2 77 216 2617232 2617371 1.570000e-18 104.0
23 TraesCS5D01G058000 chr2D 91.071 56 4 1 163 217 134647298 134647243 1.230000e-09 75.0
24 TraesCS5D01G058000 chr2D 96.875 32 1 0 47 78 128418559 128418590 2.000000e-03 54.7
25 TraesCS5D01G058000 chr3D 95.446 505 17 5 2300 2802 26327259 26327759 0.000000e+00 800.0
26 TraesCS5D01G058000 chr3D 98.802 334 4 0 2867 3200 26327757 26328090 2.130000e-166 595.0
27 TraesCS5D01G058000 chr3D 94.595 37 2 0 326 362 352148672 352148636 1.240000e-04 58.4
28 TraesCS5D01G058000 chr3D 100.000 31 0 0 47 77 579045081 579045111 1.240000e-04 58.4
29 TraesCS5D01G058000 chr3D 100.000 28 0 0 328 355 593088253 593088226 6.000000e-03 52.8
30 TraesCS5D01G058000 chr6D 87.141 731 60 8 2321 3041 463918515 463917809 0.000000e+00 798.0
31 TraesCS5D01G058000 chr6D 87.004 731 60 9 2321 3041 463934743 463934038 0.000000e+00 791.0
32 TraesCS5D01G058000 chr4D 94.118 459 20 6 2303 2760 4804981 4805433 0.000000e+00 691.0
33 TraesCS5D01G058000 chr6A 87.140 591 53 9 2321 2891 548590791 548590204 0.000000e+00 649.0
34 TraesCS5D01G058000 chr6A 88.387 310 24 7 2303 2606 523829266 523828963 2.350000e-96 363.0
35 TraesCS5D01G058000 chr6A 90.308 227 13 5 2384 2606 54085851 54086072 4.040000e-74 289.0
36 TraesCS5D01G058000 chr7B 86.594 552 57 9 2496 3041 628545263 628545803 7.640000e-166 593.0
37 TraesCS5D01G058000 chr7B 98.551 69 1 0 2235 2303 677956000 677955932 4.340000e-24 122.0
38 TraesCS5D01G058000 chr7B 92.537 67 4 1 2234 2300 595883929 595883994 9.450000e-16 95.3
39 TraesCS5D01G058000 chr7B 92.537 67 4 1 2234 2300 595890005 595890070 9.450000e-16 95.3
40 TraesCS5D01G058000 chr7B 96.875 32 1 0 47 78 673282113 673282144 2.000000e-03 54.7
41 TraesCS5D01G058000 chr7B 94.286 35 2 0 328 362 689432532 689432498 2.000000e-03 54.7
42 TraesCS5D01G058000 chr7B 91.892 37 3 0 327 363 654975386 654975350 6.000000e-03 52.8
43 TraesCS5D01G058000 chr3B 92.336 274 18 1 2685 2958 753694840 753694570 1.390000e-103 387.0
44 TraesCS5D01G058000 chr3B 91.971 274 18 2 2685 2958 753698346 753698077 6.480000e-102 381.0
45 TraesCS5D01G058000 chr3B 97.143 35 1 0 328 362 732113196 732113162 3.450000e-05 60.2
46 TraesCS5D01G058000 chr7D 89.320 309 25 4 2303 2606 32505950 32506255 6.480000e-102 381.0
47 TraesCS5D01G058000 chr7D 97.222 36 1 0 327 362 603276634 603276599 9.580000e-06 62.1
48 TraesCS5D01G058000 chr7D 100.000 30 0 0 334 363 553592475 553592446 4.460000e-04 56.5
49 TraesCS5D01G058000 chr7D 100.000 29 0 0 50 78 575218769 575218741 2.000000e-03 54.7
50 TraesCS5D01G058000 chr3A 87.781 311 24 8 2303 2606 648609782 648609479 5.080000e-93 351.0
51 TraesCS5D01G058000 chr3A 89.333 75 8 0 2229 2303 24195093 24195019 9.450000e-16 95.3
52 TraesCS5D01G058000 chr3A 89.333 75 8 0 2229 2303 516245101 516245027 9.450000e-16 95.3
53 TraesCS5D01G058000 chr7A 79.739 153 27 4 69 218 704466766 704466917 1.210000e-19 108.0
54 TraesCS5D01G058000 chr7A 90.278 72 7 0 2229 2300 25057246 25057175 9.450000e-16 95.3
55 TraesCS5D01G058000 chr7A 97.222 36 1 0 327 362 213620097 213620132 9.580000e-06 62.1
56 TraesCS5D01G058000 chr7A 97.143 35 1 0 328 362 634330293 634330259 3.450000e-05 60.2
57 TraesCS5D01G058000 chr6B 97.143 35 1 0 328 362 448665731 448665697 3.450000e-05 60.2
58 TraesCS5D01G058000 chr6B 97.143 35 1 0 328 362 648646741 648646775 3.450000e-05 60.2
59 TraesCS5D01G058000 chr6B 96.875 32 1 0 47 78 620266681 620266650 2.000000e-03 54.7
60 TraesCS5D01G058000 chr4A 94.595 37 2 0 326 362 656553722 656553758 1.240000e-04 58.4
61 TraesCS5D01G058000 chr2A 96.875 32 1 0 47 78 36021605 36021574 2.000000e-03 54.7
62 TraesCS5D01G058000 chr1A 96.875 32 1 0 47 78 387338578 387338609 2.000000e-03 54.7
63 TraesCS5D01G058000 chr1A 100.000 28 0 0 47 74 300098107 300098134 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G058000 chr5D 54783870 54787069 3199 False 5910.000000 5910 100.0000 1 3200 1 chr5D.!!$F1 3199
1 TraesCS5D01G058000 chr5A 43252626 43253788 1162 True 1838.000000 1838 95.3570 844 1994 1 chr5A.!!$R2 1150
2 TraesCS5D01G058000 chr5A 42695388 42699375 3987 True 949.333333 1999 90.9680 1 1994 3 chr5A.!!$R5 1993
3 TraesCS5D01G058000 chr5A 43488878 43489439 561 True 758.000000 758 90.9730 1 564 1 chr5A.!!$R4 563
4 TraesCS5D01G058000 chr5A 20423744 20424408 664 True 743.000000 743 87.2780 2303 2958 1 chr5A.!!$R1 655
5 TraesCS5D01G058000 chr5B 57493672 57495649 1977 True 660.600000 1746 94.7810 1 1995 3 chr5B.!!$R2 1994
6 TraesCS5D01G058000 chr2B 20649283 20650168 885 True 1253.000000 1253 92.4550 2328 3200 1 chr2B.!!$R1 872
7 TraesCS5D01G058000 chr2D 72590564 72591741 1177 True 725.500000 937 95.0905 2303 3200 2 chr2D.!!$R2 897
8 TraesCS5D01G058000 chr3D 26327259 26328090 831 False 697.500000 800 97.1240 2300 3200 2 chr3D.!!$F2 900
9 TraesCS5D01G058000 chr6D 463917809 463918515 706 True 798.000000 798 87.1410 2321 3041 1 chr6D.!!$R1 720
10 TraesCS5D01G058000 chr6D 463934038 463934743 705 True 791.000000 791 87.0040 2321 3041 1 chr6D.!!$R2 720
11 TraesCS5D01G058000 chr6A 548590204 548590791 587 True 649.000000 649 87.1400 2321 2891 1 chr6A.!!$R2 570
12 TraesCS5D01G058000 chr7B 628545263 628545803 540 False 593.000000 593 86.5940 2496 3041 1 chr7B.!!$F3 545
13 TraesCS5D01G058000 chr3B 753694570 753698346 3776 True 384.000000 387 92.1535 2685 2958 2 chr3B.!!$R2 273

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
714 2947 0.040336 CTTGCAGCAGCTTGACACAG 60.040 55.0 1.76 0.0 42.74 3.66 F
2013 4267 0.096454 GGGTTTACGCATGCGACTTC 59.904 55.0 43.72 27.9 42.83 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2047 4301 0.027194 GCATCATGCAGCTACACGTG 59.973 55.0 15.48 15.48 44.26 4.49 R
2820 5412 1.426041 GGTGACACGAGTGCAACGTT 61.426 55.0 15.70 0.00 45.86 3.99 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
89 90 3.855379 GTGTATGTGCGACTTCGTCAATA 59.145 43.478 0.00 0.00 42.22 1.90
94 95 3.366724 TGTGCGACTTCGTCAATATCAAC 59.633 43.478 0.00 0.00 42.22 3.18
107 327 2.708216 TATCAACATGATGTGCCGGT 57.292 45.000 1.90 0.00 37.70 5.28
131 351 5.965922 TCAGTCTCTCGAAAATGCTCATAA 58.034 37.500 0.00 0.00 0.00 1.90
134 354 4.025313 GTCTCTCGAAAATGCTCATAAGGC 60.025 45.833 0.00 0.00 0.00 4.35
162 382 3.846423 TGCGTTTGTGCATTCATATGT 57.154 38.095 1.90 0.00 40.62 2.29
195 415 4.379339 TGTGTATGTATAAGCGTCTGCA 57.621 40.909 0.00 0.00 46.23 4.41
243 464 4.037021 CACGTACGAAACAGAAGTACACA 58.963 43.478 24.41 0.00 40.32 3.72
287 508 1.467204 CGCAATGTGTGTGTGTGTGTT 60.467 47.619 0.00 0.00 32.74 3.32
331 745 8.534333 TTGTGATGCTCCGATAAATAATACTC 57.466 34.615 0.00 0.00 0.00 2.59
335 749 8.462811 TGATGCTCCGATAAATAATACTCTCTC 58.537 37.037 0.00 0.00 0.00 3.20
444 858 6.437477 TGGTATCTATCACTAATAGGGCAGTG 59.563 42.308 0.00 0.00 42.88 3.66
456 870 6.949352 AATAGGGCAGTGATTTTGACTATG 57.051 37.500 0.00 0.00 0.00 2.23
458 872 3.010584 AGGGCAGTGATTTTGACTATGGT 59.989 43.478 0.00 0.00 0.00 3.55
513 928 1.269051 GCAACTTTTCCAACCACGAGG 60.269 52.381 0.00 0.00 42.21 4.63
525 940 2.711542 ACCACGAGGAGCCAATTAAAG 58.288 47.619 5.68 0.00 38.69 1.85
538 953 8.286097 GGAGCCAATTAAAGATCTATTTTCGAG 58.714 37.037 0.00 0.00 0.00 4.04
548 963 8.777865 AAGATCTATTTTCGAGTGTCAATTCA 57.222 30.769 0.00 0.00 0.00 2.57
556 971 3.777807 GAGTGTCAATTCAGTCGTGTG 57.222 47.619 0.00 0.00 0.00 3.82
603 1018 8.903820 AGTTTTAAATAGTGGATTATGTCAGGC 58.096 33.333 0.00 0.00 0.00 4.85
604 1019 8.903820 GTTTTAAATAGTGGATTATGTCAGGCT 58.096 33.333 0.00 0.00 0.00 4.58
608 1023 8.682936 AAATAGTGGATTATGTCAGGCTAAAG 57.317 34.615 0.00 0.00 0.00 1.85
610 1025 5.923204 AGTGGATTATGTCAGGCTAAAGAG 58.077 41.667 0.00 0.00 0.00 2.85
620 1036 1.743252 GCTAAAGAGCTGGCGTGCT 60.743 57.895 4.49 4.49 45.98 4.40
652 1068 1.369689 GCGCGCTAAATGGAGCATG 60.370 57.895 26.67 0.00 42.99 4.06
672 1088 1.134189 GCCCCTCCAAACGTTATAGCT 60.134 52.381 0.00 0.00 0.00 3.32
691 2924 2.845752 TTCGACATGCCGGGCACTAC 62.846 60.000 26.48 16.43 43.04 2.73
712 2945 1.371389 GCTTGCAGCAGCTTGACAC 60.371 57.895 1.76 0.00 41.89 3.67
713 2946 2.027325 CTTGCAGCAGCTTGACACA 58.973 52.632 1.76 0.00 42.74 3.72
714 2947 0.040336 CTTGCAGCAGCTTGACACAG 60.040 55.000 1.76 0.00 42.74 3.66
1003 3257 0.179156 CACTGCATTCCGTTCCATGC 60.179 55.000 0.00 0.00 45.20 4.06
1076 3330 2.202987 CTGCTCATCGGCCTCACC 60.203 66.667 0.00 0.00 0.00 4.02
1109 3363 0.912486 GCACCTCCTCCCTGTACAAT 59.088 55.000 0.00 0.00 0.00 2.71
1415 3669 2.352805 CTGGGGAAGCACCTGTCC 59.647 66.667 0.00 0.00 38.98 4.02
1799 4053 3.426117 ATACTTCCAGGGCGACGCG 62.426 63.158 14.61 3.53 0.00 6.01
1980 4234 1.021390 CGCCAACTACTCCTGCCTTG 61.021 60.000 0.00 0.00 0.00 3.61
1995 4249 0.816825 CCTTGTCATGGCCTGATCGG 60.817 60.000 3.32 0.00 35.97 4.18
1996 4250 0.816825 CTTGTCATGGCCTGATCGGG 60.817 60.000 16.98 16.98 35.97 5.14
1997 4251 1.561769 TTGTCATGGCCTGATCGGGT 61.562 55.000 21.88 0.00 35.97 5.28
1998 4252 1.224592 GTCATGGCCTGATCGGGTT 59.775 57.895 21.88 4.81 35.97 4.11
1999 4253 0.394352 GTCATGGCCTGATCGGGTTT 60.394 55.000 21.88 4.44 35.97 3.27
2000 4254 1.134220 GTCATGGCCTGATCGGGTTTA 60.134 52.381 21.88 8.99 35.97 2.01
2001 4255 1.134220 TCATGGCCTGATCGGGTTTAC 60.134 52.381 21.88 10.46 0.00 2.01
2002 4256 0.179056 ATGGCCTGATCGGGTTTACG 60.179 55.000 21.88 0.00 0.00 3.18
2003 4257 2.178235 GGCCTGATCGGGTTTACGC 61.178 63.158 21.88 6.07 0.00 4.42
2004 4258 1.448893 GCCTGATCGGGTTTACGCA 60.449 57.895 21.88 0.00 0.00 5.24
2005 4259 0.814010 GCCTGATCGGGTTTACGCAT 60.814 55.000 21.88 0.00 0.00 4.73
2006 4260 0.937304 CCTGATCGGGTTTACGCATG 59.063 55.000 12.93 0.00 0.00 4.06
2007 4261 0.304705 CTGATCGGGTTTACGCATGC 59.695 55.000 7.91 7.91 0.00 4.06
2008 4262 1.275657 GATCGGGTTTACGCATGCG 59.724 57.895 36.79 36.79 46.03 4.73
2009 4263 1.149361 GATCGGGTTTACGCATGCGA 61.149 55.000 43.72 25.29 42.83 5.10
2010 4264 1.426041 ATCGGGTTTACGCATGCGAC 61.426 55.000 43.72 30.60 42.83 5.19
2011 4265 2.098233 CGGGTTTACGCATGCGACT 61.098 57.895 43.72 26.37 42.83 4.18
2012 4266 1.632046 CGGGTTTACGCATGCGACTT 61.632 55.000 43.72 25.61 42.83 3.01
2013 4267 0.096454 GGGTTTACGCATGCGACTTC 59.904 55.000 43.72 27.90 42.83 3.01
2014 4268 0.793861 GGTTTACGCATGCGACTTCA 59.206 50.000 43.72 20.52 42.83 3.02
2015 4269 1.195900 GGTTTACGCATGCGACTTCAA 59.804 47.619 43.72 24.58 42.83 2.69
2016 4270 2.159572 GGTTTACGCATGCGACTTCAAT 60.160 45.455 43.72 23.36 42.83 2.57
2017 4271 3.488489 GTTTACGCATGCGACTTCAATT 58.512 40.909 43.72 22.60 42.83 2.32
2018 4272 3.383546 TTACGCATGCGACTTCAATTC 57.616 42.857 43.72 0.00 42.83 2.17
2019 4273 1.155889 ACGCATGCGACTTCAATTCA 58.844 45.000 43.72 0.00 42.83 2.57
2020 4274 1.535028 ACGCATGCGACTTCAATTCAA 59.465 42.857 43.72 0.00 42.83 2.69
2021 4275 2.031245 ACGCATGCGACTTCAATTCAAA 60.031 40.909 43.72 0.00 42.83 2.69
2022 4276 3.173599 CGCATGCGACTTCAATTCAAAT 58.826 40.909 35.82 0.00 42.83 2.32
2023 4277 3.001464 CGCATGCGACTTCAATTCAAATG 60.001 43.478 35.82 0.00 42.83 2.32
2024 4278 3.241868 GCATGCGACTTCAATTCAAATGC 60.242 43.478 0.00 0.00 0.00 3.56
2025 4279 3.921119 TGCGACTTCAATTCAAATGCT 57.079 38.095 0.00 0.00 0.00 3.79
2026 4280 4.241590 TGCGACTTCAATTCAAATGCTT 57.758 36.364 0.00 0.00 0.00 3.91
2027 4281 4.619973 TGCGACTTCAATTCAAATGCTTT 58.380 34.783 0.00 0.00 0.00 3.51
2028 4282 4.445052 TGCGACTTCAATTCAAATGCTTTG 59.555 37.500 0.00 3.17 41.96 2.77
2029 4283 4.143263 GCGACTTCAATTCAAATGCTTTGG 60.143 41.667 8.23 0.00 40.98 3.28
2030 4284 4.984161 CGACTTCAATTCAAATGCTTTGGT 59.016 37.500 8.23 0.00 40.98 3.67
2031 4285 5.463061 CGACTTCAATTCAAATGCTTTGGTT 59.537 36.000 8.23 3.21 40.98 3.67
2032 4286 6.562640 CGACTTCAATTCAAATGCTTTGGTTG 60.563 38.462 8.23 11.72 40.98 3.77
2033 4287 6.347696 ACTTCAATTCAAATGCTTTGGTTGA 58.652 32.000 16.42 16.42 40.44 3.18
2034 4288 6.993902 ACTTCAATTCAAATGCTTTGGTTGAT 59.006 30.769 18.55 10.57 41.07 2.57
2035 4289 6.788684 TCAATTCAAATGCTTTGGTTGATG 57.211 33.333 16.42 4.46 38.96 3.07
2036 4290 5.701750 TCAATTCAAATGCTTTGGTTGATGG 59.298 36.000 16.42 5.63 38.96 3.51
2037 4291 4.686191 TTCAAATGCTTTGGTTGATGGT 57.314 36.364 8.23 0.00 40.98 3.55
2038 4292 5.798125 TTCAAATGCTTTGGTTGATGGTA 57.202 34.783 8.23 0.00 40.98 3.25
2039 4293 5.389859 TCAAATGCTTTGGTTGATGGTAG 57.610 39.130 8.23 0.00 40.98 3.18
2040 4294 4.220382 TCAAATGCTTTGGTTGATGGTAGG 59.780 41.667 8.23 0.00 40.98 3.18
2041 4295 1.544724 TGCTTTGGTTGATGGTAGGC 58.455 50.000 0.00 0.00 0.00 3.93
2042 4296 1.202989 TGCTTTGGTTGATGGTAGGCA 60.203 47.619 0.00 0.00 0.00 4.75
2043 4297 2.102578 GCTTTGGTTGATGGTAGGCAT 58.897 47.619 0.00 0.00 0.00 4.40
2044 4298 2.099756 GCTTTGGTTGATGGTAGGCATC 59.900 50.000 0.00 0.00 0.00 3.91
2045 4299 2.036958 TTGGTTGATGGTAGGCATCG 57.963 50.000 0.00 0.00 32.04 3.84
2046 4300 0.908910 TGGTTGATGGTAGGCATCGT 59.091 50.000 0.00 0.00 32.04 3.73
2047 4301 1.134521 TGGTTGATGGTAGGCATCGTC 60.135 52.381 0.00 0.00 32.04 4.20
2048 4302 1.134521 GGTTGATGGTAGGCATCGTCA 60.135 52.381 0.00 0.00 32.04 4.35
2049 4303 1.933853 GTTGATGGTAGGCATCGTCAC 59.066 52.381 0.00 0.00 32.04 3.67
2050 4304 0.102300 TGATGGTAGGCATCGTCACG 59.898 55.000 0.00 0.00 32.04 4.35
2051 4305 0.102481 GATGGTAGGCATCGTCACGT 59.898 55.000 0.00 0.00 0.00 4.49
2052 4306 0.179111 ATGGTAGGCATCGTCACGTG 60.179 55.000 9.94 9.94 0.00 4.49
2053 4307 1.214589 GGTAGGCATCGTCACGTGT 59.785 57.895 16.51 0.00 0.00 4.49
2054 4308 0.452987 GGTAGGCATCGTCACGTGTA 59.547 55.000 16.51 2.84 0.00 2.90
2055 4309 1.533338 GGTAGGCATCGTCACGTGTAG 60.533 57.143 16.51 10.88 0.00 2.74
2056 4310 0.099968 TAGGCATCGTCACGTGTAGC 59.900 55.000 16.51 12.72 0.00 3.58
2057 4311 1.153823 GGCATCGTCACGTGTAGCT 60.154 57.895 16.51 0.00 0.00 3.32
2058 4312 1.413767 GGCATCGTCACGTGTAGCTG 61.414 60.000 16.51 12.94 0.00 4.24
2059 4313 1.991430 CATCGTCACGTGTAGCTGC 59.009 57.895 16.51 0.00 0.00 5.25
2060 4314 0.732538 CATCGTCACGTGTAGCTGCA 60.733 55.000 16.51 0.00 0.00 4.41
2061 4315 0.173481 ATCGTCACGTGTAGCTGCAT 59.827 50.000 16.51 0.00 0.00 3.96
2062 4316 0.732538 TCGTCACGTGTAGCTGCATG 60.733 55.000 20.91 20.91 0.00 4.06
2063 4317 0.732538 CGTCACGTGTAGCTGCATGA 60.733 55.000 27.98 16.38 0.00 3.07
2064 4318 1.645034 GTCACGTGTAGCTGCATGAT 58.355 50.000 27.98 11.32 0.00 2.45
2065 4319 1.325640 GTCACGTGTAGCTGCATGATG 59.674 52.381 27.98 20.70 0.00 3.07
2066 4320 0.027194 CACGTGTAGCTGCATGATGC 59.973 55.000 27.98 11.12 45.29 3.91
2078 4332 2.942710 GCATGATGCATGTTGATAGGC 58.057 47.619 13.36 0.00 44.26 3.93
2079 4333 2.667448 GCATGATGCATGTTGATAGGCG 60.667 50.000 13.36 0.00 44.26 5.52
2080 4334 2.618442 TGATGCATGTTGATAGGCGA 57.382 45.000 2.46 0.00 0.00 5.54
2081 4335 2.212652 TGATGCATGTTGATAGGCGAC 58.787 47.619 2.46 0.00 0.00 5.19
2082 4336 5.569148 CATGATGCATGTTGATAGGCGACT 61.569 45.833 2.46 0.00 39.64 4.18
2083 4337 1.939974 TGCATGTTGATAGGCGACTC 58.060 50.000 0.00 0.00 43.67 3.36
2084 4338 1.206849 TGCATGTTGATAGGCGACTCA 59.793 47.619 0.00 0.00 43.67 3.41
2085 4339 2.279741 GCATGTTGATAGGCGACTCAA 58.720 47.619 0.00 0.00 43.67 3.02
2086 4340 2.677836 GCATGTTGATAGGCGACTCAAA 59.322 45.455 0.00 0.00 43.67 2.69
2087 4341 3.126858 GCATGTTGATAGGCGACTCAAAA 59.873 43.478 0.00 0.00 43.67 2.44
2088 4342 4.379394 GCATGTTGATAGGCGACTCAAAAA 60.379 41.667 0.00 0.00 43.67 1.94
2089 4343 5.327091 CATGTTGATAGGCGACTCAAAAAG 58.673 41.667 0.00 0.00 43.67 2.27
2090 4344 4.385825 TGTTGATAGGCGACTCAAAAAGT 58.614 39.130 0.00 0.00 43.67 2.66
2091 4345 4.819630 TGTTGATAGGCGACTCAAAAAGTT 59.180 37.500 0.00 0.00 43.67 2.66
2092 4346 5.049680 TGTTGATAGGCGACTCAAAAAGTTC 60.050 40.000 0.00 0.00 43.67 3.01
2093 4347 4.637276 TGATAGGCGACTCAAAAAGTTCA 58.363 39.130 0.00 0.00 43.67 3.18
2094 4348 5.060506 TGATAGGCGACTCAAAAAGTTCAA 58.939 37.500 0.00 0.00 43.67 2.69
2095 4349 5.705441 TGATAGGCGACTCAAAAAGTTCAAT 59.295 36.000 0.00 0.00 43.67 2.57
2096 4350 4.228912 AGGCGACTCAAAAAGTTCAATG 57.771 40.909 0.00 0.00 38.74 2.82
2097 4351 3.004734 AGGCGACTCAAAAAGTTCAATGG 59.995 43.478 0.00 0.00 38.74 3.16
2098 4352 3.004315 GGCGACTCAAAAAGTTCAATGGA 59.996 43.478 0.00 0.00 38.74 3.41
2099 4353 4.321230 GGCGACTCAAAAAGTTCAATGGAT 60.321 41.667 0.00 0.00 38.74 3.41
2100 4354 5.106317 GGCGACTCAAAAAGTTCAATGGATA 60.106 40.000 0.00 0.00 38.74 2.59
2101 4355 6.404734 GGCGACTCAAAAAGTTCAATGGATAT 60.405 38.462 0.00 0.00 38.74 1.63
2102 4356 6.688813 GCGACTCAAAAAGTTCAATGGATATC 59.311 38.462 0.00 0.00 38.74 1.63
2103 4357 6.901887 CGACTCAAAAAGTTCAATGGATATCG 59.098 38.462 0.00 0.00 38.74 2.92
2104 4358 7.201522 CGACTCAAAAAGTTCAATGGATATCGA 60.202 37.037 0.00 0.00 38.74 3.59
2105 4359 8.511604 ACTCAAAAAGTTCAATGGATATCGAT 57.488 30.769 2.16 2.16 33.03 3.59
2106 4360 8.400947 ACTCAAAAAGTTCAATGGATATCGATG 58.599 33.333 8.54 0.00 33.03 3.84
2107 4361 7.195646 TCAAAAAGTTCAATGGATATCGATGC 58.804 34.615 8.54 0.00 0.00 3.91
2108 4362 6.698008 AAAAGTTCAATGGATATCGATGCA 57.302 33.333 8.54 0.00 37.85 3.96
2109 4363 5.936686 AAGTTCAATGGATATCGATGCAG 57.063 39.130 8.54 0.00 36.77 4.41
2110 4364 5.219343 AGTTCAATGGATATCGATGCAGA 57.781 39.130 8.54 0.00 36.77 4.26
2111 4365 5.614308 AGTTCAATGGATATCGATGCAGAA 58.386 37.500 8.54 4.22 36.77 3.02
2112 4366 6.236409 AGTTCAATGGATATCGATGCAGAAT 58.764 36.000 8.54 0.00 36.77 2.40
2113 4367 6.713903 AGTTCAATGGATATCGATGCAGAATT 59.286 34.615 8.54 0.00 36.77 2.17
2114 4368 6.490566 TCAATGGATATCGATGCAGAATTG 57.509 37.500 8.54 11.26 36.77 2.32
2129 4383 4.249020 TTGCACAGCAACGGCGTG 62.249 61.111 15.70 9.33 43.99 5.34
2136 4390 3.645286 GCAACGGCGTGGTTAGAA 58.355 55.556 15.70 0.00 0.00 2.10
2137 4391 1.205820 GCAACGGCGTGGTTAGAAC 59.794 57.895 15.70 0.00 0.00 3.01
2138 4392 1.500512 GCAACGGCGTGGTTAGAACA 61.501 55.000 15.70 0.00 0.00 3.18
2139 4393 0.233848 CAACGGCGTGGTTAGAACAC 59.766 55.000 15.70 0.00 35.55 3.32
2149 4403 4.722194 GTGGTTAGAACACGTACGTATGA 58.278 43.478 22.34 2.01 0.00 2.15
2150 4404 4.790140 GTGGTTAGAACACGTACGTATGAG 59.210 45.833 22.34 15.56 0.00 2.90
2151 4405 3.788163 GGTTAGAACACGTACGTATGAGC 59.212 47.826 22.34 9.93 0.00 4.26
2152 4406 4.437930 GGTTAGAACACGTACGTATGAGCT 60.438 45.833 22.34 15.46 0.00 4.09
2153 4407 3.132629 AGAACACGTACGTATGAGCTG 57.867 47.619 22.34 9.44 0.00 4.24
2154 4408 2.486982 AGAACACGTACGTATGAGCTGT 59.513 45.455 22.34 10.14 0.00 4.40
2155 4409 3.057736 AGAACACGTACGTATGAGCTGTT 60.058 43.478 22.34 18.18 0.00 3.16
2156 4410 3.293311 ACACGTACGTATGAGCTGTTT 57.707 42.857 22.34 0.00 0.00 2.83
2157 4411 2.984471 ACACGTACGTATGAGCTGTTTG 59.016 45.455 22.34 6.57 0.00 2.93
2158 4412 1.990563 ACGTACGTATGAGCTGTTTGC 59.009 47.619 21.41 0.00 43.29 3.68
2171 4425 4.749245 GCTGTTTGCTTATGTACTGTGT 57.251 40.909 0.00 0.00 38.95 3.72
2172 4426 5.108385 GCTGTTTGCTTATGTACTGTGTT 57.892 39.130 0.00 0.00 38.95 3.32
2173 4427 6.236017 GCTGTTTGCTTATGTACTGTGTTA 57.764 37.500 0.00 0.00 38.95 2.41
2174 4428 6.664515 GCTGTTTGCTTATGTACTGTGTTAA 58.335 36.000 0.00 0.00 38.95 2.01
2175 4429 7.136119 GCTGTTTGCTTATGTACTGTGTTAAA 58.864 34.615 0.00 0.00 38.95 1.52
2176 4430 7.646130 GCTGTTTGCTTATGTACTGTGTTAAAA 59.354 33.333 0.00 0.00 38.95 1.52
2177 4431 9.509855 CTGTTTGCTTATGTACTGTGTTAAAAA 57.490 29.630 0.00 0.00 0.00 1.94
2178 4432 9.509855 TGTTTGCTTATGTACTGTGTTAAAAAG 57.490 29.630 0.00 0.00 0.00 2.27
2179 4433 8.964150 GTTTGCTTATGTACTGTGTTAAAAAGG 58.036 33.333 0.00 0.00 0.00 3.11
2180 4434 8.453238 TTGCTTATGTACTGTGTTAAAAAGGA 57.547 30.769 0.00 0.00 0.00 3.36
2181 4435 7.867752 TGCTTATGTACTGTGTTAAAAAGGAC 58.132 34.615 0.00 0.00 0.00 3.85
2182 4436 7.013529 GCTTATGTACTGTGTTAAAAAGGACG 58.986 38.462 0.00 0.00 0.00 4.79
2183 4437 5.934935 ATGTACTGTGTTAAAAAGGACGG 57.065 39.130 0.00 0.00 0.00 4.79
2184 4438 4.768583 TGTACTGTGTTAAAAAGGACGGT 58.231 39.130 0.00 0.00 0.00 4.83
2185 4439 4.571580 TGTACTGTGTTAAAAAGGACGGTG 59.428 41.667 0.00 0.00 0.00 4.94
2186 4440 3.613030 ACTGTGTTAAAAAGGACGGTGT 58.387 40.909 0.00 0.00 0.00 4.16
2187 4441 4.011698 ACTGTGTTAAAAAGGACGGTGTT 58.988 39.130 0.00 0.00 0.00 3.32
2188 4442 4.095334 ACTGTGTTAAAAAGGACGGTGTTC 59.905 41.667 0.00 0.00 0.00 3.18
2189 4443 4.008330 TGTGTTAAAAAGGACGGTGTTCA 58.992 39.130 0.00 0.00 0.00 3.18
2190 4444 4.641094 TGTGTTAAAAAGGACGGTGTTCAT 59.359 37.500 0.00 0.00 0.00 2.57
2191 4445 5.821470 TGTGTTAAAAAGGACGGTGTTCATA 59.179 36.000 0.00 0.00 0.00 2.15
2192 4446 6.318144 TGTGTTAAAAAGGACGGTGTTCATAA 59.682 34.615 0.00 0.00 0.00 1.90
2193 4447 7.013464 TGTGTTAAAAAGGACGGTGTTCATAAT 59.987 33.333 0.00 0.00 0.00 1.28
2194 4448 8.505625 GTGTTAAAAAGGACGGTGTTCATAATA 58.494 33.333 0.00 0.00 0.00 0.98
2195 4449 9.233649 TGTTAAAAAGGACGGTGTTCATAATAT 57.766 29.630 0.00 0.00 0.00 1.28
2201 4455 7.492352 AGGACGGTGTTCATAATATTTAAGC 57.508 36.000 0.00 0.00 0.00 3.09
2202 4456 7.051623 AGGACGGTGTTCATAATATTTAAGCA 58.948 34.615 0.00 0.00 0.00 3.91
2203 4457 7.012044 AGGACGGTGTTCATAATATTTAAGCAC 59.988 37.037 0.00 0.00 0.00 4.40
2204 4458 6.711579 ACGGTGTTCATAATATTTAAGCACG 58.288 36.000 0.00 0.00 0.00 5.34
2205 4459 6.133392 CGGTGTTCATAATATTTAAGCACGG 58.867 40.000 0.00 0.00 0.00 4.94
2206 4460 6.238266 CGGTGTTCATAATATTTAAGCACGGT 60.238 38.462 0.00 0.00 0.00 4.83
2207 4461 7.477494 GGTGTTCATAATATTTAAGCACGGTT 58.523 34.615 0.00 0.00 0.00 4.44
2208 4462 7.642586 GGTGTTCATAATATTTAAGCACGGTTC 59.357 37.037 0.00 0.00 0.00 3.62
2209 4463 8.178964 GTGTTCATAATATTTAAGCACGGTTCA 58.821 33.333 0.00 0.00 0.00 3.18
2210 4464 8.178964 TGTTCATAATATTTAAGCACGGTTCAC 58.821 33.333 0.00 0.00 0.00 3.18
2211 4465 8.395633 GTTCATAATATTTAAGCACGGTTCACT 58.604 33.333 0.00 0.00 0.00 3.41
2212 4466 8.138365 TCATAATATTTAAGCACGGTTCACTC 57.862 34.615 0.00 0.00 0.00 3.51
2213 4467 7.985184 TCATAATATTTAAGCACGGTTCACTCT 59.015 33.333 0.00 0.00 0.00 3.24
2214 4468 6.663944 AATATTTAAGCACGGTTCACTCTC 57.336 37.500 0.00 0.00 0.00 3.20
2215 4469 3.746045 TTTAAGCACGGTTCACTCTCT 57.254 42.857 0.00 0.00 0.00 3.10
2216 4470 3.746045 TTAAGCACGGTTCACTCTCTT 57.254 42.857 0.00 0.00 0.00 2.85
2217 4471 2.622064 AAGCACGGTTCACTCTCTTT 57.378 45.000 0.00 0.00 0.00 2.52
2218 4472 2.622064 AGCACGGTTCACTCTCTTTT 57.378 45.000 0.00 0.00 0.00 2.27
2219 4473 2.919228 AGCACGGTTCACTCTCTTTTT 58.081 42.857 0.00 0.00 0.00 1.94
2220 4474 2.872858 AGCACGGTTCACTCTCTTTTTC 59.127 45.455 0.00 0.00 0.00 2.29
2221 4475 2.031944 GCACGGTTCACTCTCTTTTTCC 60.032 50.000 0.00 0.00 0.00 3.13
2222 4476 3.202906 CACGGTTCACTCTCTTTTTCCA 58.797 45.455 0.00 0.00 0.00 3.53
2223 4477 3.815401 CACGGTTCACTCTCTTTTTCCAT 59.185 43.478 0.00 0.00 0.00 3.41
2224 4478 3.815401 ACGGTTCACTCTCTTTTTCCATG 59.185 43.478 0.00 0.00 0.00 3.66
2225 4479 3.365364 CGGTTCACTCTCTTTTTCCATGC 60.365 47.826 0.00 0.00 0.00 4.06
2226 4480 3.057245 GGTTCACTCTCTTTTTCCATGCC 60.057 47.826 0.00 0.00 0.00 4.40
2227 4481 3.507162 TCACTCTCTTTTTCCATGCCA 57.493 42.857 0.00 0.00 0.00 4.92
2228 4482 3.149196 TCACTCTCTTTTTCCATGCCAC 58.851 45.455 0.00 0.00 0.00 5.01
2229 4483 3.152341 CACTCTCTTTTTCCATGCCACT 58.848 45.455 0.00 0.00 0.00 4.00
2230 4484 3.571401 CACTCTCTTTTTCCATGCCACTT 59.429 43.478 0.00 0.00 0.00 3.16
2231 4485 4.038402 CACTCTCTTTTTCCATGCCACTTT 59.962 41.667 0.00 0.00 0.00 2.66
2232 4486 4.651045 ACTCTCTTTTTCCATGCCACTTTT 59.349 37.500 0.00 0.00 0.00 2.27
2233 4487 5.129320 ACTCTCTTTTTCCATGCCACTTTTT 59.871 36.000 0.00 0.00 0.00 1.94
2252 4506 2.995466 TTGTAGGAGTAACCACGACG 57.005 50.000 0.00 0.00 42.04 5.12
2253 4507 1.896220 TGTAGGAGTAACCACGACGT 58.104 50.000 0.00 0.00 42.04 4.34
2254 4508 1.536766 TGTAGGAGTAACCACGACGTG 59.463 52.381 21.02 21.02 42.04 4.49
2255 4509 1.537202 GTAGGAGTAACCACGACGTGT 59.463 52.381 25.18 11.45 42.04 4.49
2264 4518 3.261441 CACGACGTGTGGTGTTAGT 57.739 52.632 19.77 0.00 45.21 2.24
2265 4519 0.850217 CACGACGTGTGGTGTTAGTG 59.150 55.000 19.77 0.00 45.21 2.74
2266 4520 0.457035 ACGACGTGTGGTGTTAGTGT 59.543 50.000 0.00 0.00 0.00 3.55
2267 4521 1.126079 CGACGTGTGGTGTTAGTGTC 58.874 55.000 0.00 0.00 0.00 3.67
2268 4522 1.494824 GACGTGTGGTGTTAGTGTCC 58.505 55.000 0.00 0.00 0.00 4.02
2269 4523 1.068127 GACGTGTGGTGTTAGTGTCCT 59.932 52.381 0.00 0.00 0.00 3.85
2270 4524 1.202486 ACGTGTGGTGTTAGTGTCCTG 60.202 52.381 0.00 0.00 0.00 3.86
2271 4525 1.872237 CGTGTGGTGTTAGTGTCCTGG 60.872 57.143 0.00 0.00 0.00 4.45
2272 4526 1.140252 GTGTGGTGTTAGTGTCCTGGT 59.860 52.381 0.00 0.00 0.00 4.00
2273 4527 1.414919 TGTGGTGTTAGTGTCCTGGTC 59.585 52.381 0.00 0.00 0.00 4.02
2274 4528 0.677288 TGGTGTTAGTGTCCTGGTCG 59.323 55.000 0.00 0.00 0.00 4.79
2275 4529 0.037605 GGTGTTAGTGTCCTGGTCGG 60.038 60.000 0.00 0.00 0.00 4.79
2276 4530 0.963962 GTGTTAGTGTCCTGGTCGGA 59.036 55.000 0.00 0.00 40.30 4.55
2283 4537 4.865629 TCCTGGTCGGACACAGAT 57.134 55.556 20.96 0.00 36.69 2.90
2284 4538 3.991972 TCCTGGTCGGACACAGATA 57.008 52.632 20.96 10.67 36.69 1.98
2285 4539 2.225382 TCCTGGTCGGACACAGATAA 57.775 50.000 20.96 8.93 36.69 1.75
2286 4540 2.100197 TCCTGGTCGGACACAGATAAG 58.900 52.381 20.96 9.64 36.69 1.73
2287 4541 1.471676 CCTGGTCGGACACAGATAAGC 60.472 57.143 20.96 0.00 36.86 3.09
2288 4542 1.204704 CTGGTCGGACACAGATAAGCA 59.795 52.381 16.75 0.65 36.86 3.91
2289 4543 1.067142 TGGTCGGACACAGATAAGCAC 60.067 52.381 10.76 0.00 0.00 4.40
2290 4544 1.269166 GTCGGACACAGATAAGCACG 58.731 55.000 2.62 0.00 0.00 5.34
2291 4545 0.885879 TCGGACACAGATAAGCACGT 59.114 50.000 0.00 0.00 0.00 4.49
2292 4546 2.086094 TCGGACACAGATAAGCACGTA 58.914 47.619 0.00 0.00 0.00 3.57
2293 4547 2.686405 TCGGACACAGATAAGCACGTAT 59.314 45.455 0.00 0.00 0.00 3.06
2294 4548 3.878699 TCGGACACAGATAAGCACGTATA 59.121 43.478 0.00 0.00 0.00 1.47
2295 4549 4.024302 TCGGACACAGATAAGCACGTATAG 60.024 45.833 0.00 0.00 0.00 1.31
2296 4550 4.261072 CGGACACAGATAAGCACGTATAGT 60.261 45.833 0.00 0.00 0.00 2.12
2297 4551 5.049886 CGGACACAGATAAGCACGTATAGTA 60.050 44.000 0.00 0.00 0.00 1.82
2298 4552 6.372185 GGACACAGATAAGCACGTATAGTAG 58.628 44.000 0.00 0.00 0.00 2.57
2301 4555 8.085720 ACACAGATAAGCACGTATAGTAGTAG 57.914 38.462 0.00 0.00 0.00 2.57
2310 4564 9.558396 AAGCACGTATAGTAGTAGTCTCTATTT 57.442 33.333 0.00 0.00 0.00 1.40
2311 4565 9.558396 AGCACGTATAGTAGTAGTCTCTATTTT 57.442 33.333 0.00 0.00 0.00 1.82
2326 4580 8.103305 AGTCTCTATTTTTAATGGAGCAGTTGA 58.897 33.333 7.63 0.00 0.00 3.18
2355 4613 1.874872 GTCGGTCAATTTTCGTCCCAA 59.125 47.619 0.00 0.00 0.00 4.12
2914 5507 1.266175 CAATCAAGGCATCGGCTCATC 59.734 52.381 0.00 0.00 37.50 2.92
3135 5729 7.439955 GTGGTATTTTTCCTTTTGTAGTTTGGG 59.560 37.037 0.00 0.00 0.00 4.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
89 90 1.745087 GAACCGGCACATCATGTTGAT 59.255 47.619 10.74 0.00 37.65 2.57
94 95 0.729116 GACTGAACCGGCACATCATG 59.271 55.000 0.00 0.00 0.00 3.07
107 327 4.257267 TGAGCATTTTCGAGAGACTGAA 57.743 40.909 0.00 0.00 41.84 3.02
131 351 0.393077 ACAAACGCACACTCTAGCCT 59.607 50.000 0.00 0.00 0.00 4.58
134 354 1.217001 TGCACAAACGCACACTCTAG 58.783 50.000 0.00 0.00 36.86 2.43
176 396 5.221244 ACAGATGCAGACGCTTATACATACA 60.221 40.000 0.00 0.00 39.64 2.29
216 437 1.673760 TCTGTTTCGTACGTGCGTAC 58.326 50.000 24.94 22.08 45.29 3.67
243 464 4.142204 TGTGTCATTGAGCATGTTTTGTGT 60.142 37.500 0.00 0.00 34.06 3.72
287 508 9.033481 CATCACAATGAACTAAAGCAAGAAAAA 57.967 29.630 0.00 0.00 34.61 1.94
331 745 4.425520 GACAAGTATTTCTGGACGGAGAG 58.574 47.826 0.00 0.00 0.00 3.20
335 749 3.226346 TCGACAAGTATTTCTGGACGG 57.774 47.619 0.00 0.00 36.30 4.79
406 820 7.949565 AGTGATAGATACCACATGAAGATCTCT 59.050 37.037 0.00 0.00 35.84 3.10
421 835 7.704578 TCACTGCCCTATTAGTGATAGATAC 57.295 40.000 3.54 0.00 45.97 2.24
456 870 9.597170 CCTAGAAAATTCCAAGTACTAGTAACC 57.403 37.037 3.61 0.00 0.00 2.85
513 928 8.831550 ACTCGAAAATAGATCTTTAATTGGCTC 58.168 33.333 0.00 0.00 0.00 4.70
525 940 8.190888 ACTGAATTGACACTCGAAAATAGATC 57.809 34.615 0.00 0.00 0.00 2.75
538 953 2.032894 CACCACACGACTGAATTGACAC 60.033 50.000 0.00 0.00 0.00 3.67
548 963 2.812591 CAGTAGTCTACACCACACGACT 59.187 50.000 12.54 0.00 39.76 4.18
556 971 7.393841 AACTCTATGAACAGTAGTCTACACC 57.606 40.000 12.54 0.00 0.00 4.16
603 1018 2.010145 TTAGCACGCCAGCTCTTTAG 57.990 50.000 0.19 0.00 45.26 1.85
604 1019 2.465860 TTTAGCACGCCAGCTCTTTA 57.534 45.000 0.19 0.00 45.26 1.85
608 1023 0.524180 GCAATTTAGCACGCCAGCTC 60.524 55.000 0.19 0.00 45.26 4.09
610 1025 1.869132 CGCAATTTAGCACGCCAGC 60.869 57.895 0.00 0.00 0.00 4.85
611 1026 1.869132 GCGCAATTTAGCACGCCAG 60.869 57.895 0.30 0.00 45.35 4.85
652 1068 1.134189 AGCTATAACGTTTGGAGGGGC 60.134 52.381 5.91 2.25 0.00 5.80
672 1088 2.651105 TAGTGCCCGGCATGTCGAA 61.651 57.895 23.62 3.12 41.91 3.71
712 2945 2.843701 ACTCCAAACTGTCTCAAGCTG 58.156 47.619 0.00 0.00 0.00 4.24
713 2946 3.118261 TGAACTCCAAACTGTCTCAAGCT 60.118 43.478 0.00 0.00 0.00 3.74
714 2947 3.206150 TGAACTCCAAACTGTCTCAAGC 58.794 45.455 0.00 0.00 0.00 4.01
716 2949 4.389374 GGATGAACTCCAAACTGTCTCAA 58.611 43.478 0.00 0.00 44.26 3.02
717 2950 3.554960 CGGATGAACTCCAAACTGTCTCA 60.555 47.826 0.00 0.00 45.24 3.27
718 2951 2.996621 CGGATGAACTCCAAACTGTCTC 59.003 50.000 0.00 0.00 45.24 3.36
719 2952 2.368875 ACGGATGAACTCCAAACTGTCT 59.631 45.455 0.00 0.00 45.24 3.41
769 3002 3.706698 TGCGATACAACAGCATAGAGTC 58.293 45.455 0.00 0.00 35.81 3.36
1499 3753 4.379243 CCGCAGAAGCCGTCCACT 62.379 66.667 0.00 0.00 37.52 4.00
1502 3756 4.821589 CTCCCGCAGAAGCCGTCC 62.822 72.222 0.00 0.00 37.52 4.79
1712 3966 1.221840 GATCACCATGCCGTCCACT 59.778 57.895 0.00 0.00 0.00 4.00
1897 4151 2.888534 CCACGTTGTATCCGCCGG 60.889 66.667 0.00 0.00 0.00 6.13
1980 4234 0.394352 AAACCCGATCAGGCCATGAC 60.394 55.000 5.01 0.78 41.91 3.06
1995 4249 0.793861 TGAAGTCGCATGCGTAAACC 59.206 50.000 36.50 22.85 40.74 3.27
1996 4250 2.587612 TTGAAGTCGCATGCGTAAAC 57.412 45.000 36.50 27.56 40.74 2.01
1997 4251 3.187432 TGAATTGAAGTCGCATGCGTAAA 59.813 39.130 36.50 23.79 40.74 2.01
1998 4252 2.739379 TGAATTGAAGTCGCATGCGTAA 59.261 40.909 36.50 23.82 40.74 3.18
1999 4253 2.342179 TGAATTGAAGTCGCATGCGTA 58.658 42.857 36.50 21.96 40.74 4.42
2000 4254 1.155889 TGAATTGAAGTCGCATGCGT 58.844 45.000 36.50 20.58 40.74 5.24
2001 4255 2.245795 TTGAATTGAAGTCGCATGCG 57.754 45.000 33.61 33.61 41.35 4.73
2002 4256 3.241868 GCATTTGAATTGAAGTCGCATGC 60.242 43.478 7.91 7.91 0.00 4.06
2003 4257 4.171005 AGCATTTGAATTGAAGTCGCATG 58.829 39.130 0.00 0.00 0.00 4.06
2004 4258 4.445452 AGCATTTGAATTGAAGTCGCAT 57.555 36.364 0.00 0.00 0.00 4.73
2005 4259 3.921119 AGCATTTGAATTGAAGTCGCA 57.079 38.095 0.00 0.00 0.00 5.10
2019 4273 3.055891 GCCTACCATCAACCAAAGCATTT 60.056 43.478 0.00 0.00 40.26 2.32
2020 4274 2.497273 GCCTACCATCAACCAAAGCATT 59.503 45.455 0.00 0.00 0.00 3.56
2021 4275 2.102578 GCCTACCATCAACCAAAGCAT 58.897 47.619 0.00 0.00 0.00 3.79
2022 4276 1.202989 TGCCTACCATCAACCAAAGCA 60.203 47.619 0.00 0.00 0.00 3.91
2023 4277 1.544724 TGCCTACCATCAACCAAAGC 58.455 50.000 0.00 0.00 0.00 3.51
2032 4286 0.102481 ACGTGACGATGCCTACCATC 59.898 55.000 13.70 0.00 45.58 3.51
2033 4287 0.179111 CACGTGACGATGCCTACCAT 60.179 55.000 13.70 0.00 36.70 3.55
2034 4288 1.214325 CACGTGACGATGCCTACCA 59.786 57.895 13.70 0.00 0.00 3.25
2035 4289 0.452987 TACACGTGACGATGCCTACC 59.547 55.000 25.01 0.00 0.00 3.18
2036 4290 1.823828 CTACACGTGACGATGCCTAC 58.176 55.000 25.01 0.00 0.00 3.18
2037 4291 0.099968 GCTACACGTGACGATGCCTA 59.900 55.000 25.01 0.00 0.00 3.93
2038 4292 1.153823 GCTACACGTGACGATGCCT 60.154 57.895 25.01 0.00 0.00 4.75
2039 4293 1.153823 AGCTACACGTGACGATGCC 60.154 57.895 25.01 2.95 0.00 4.40
2040 4294 1.991430 CAGCTACACGTGACGATGC 59.009 57.895 25.01 16.95 0.00 3.91
2041 4295 0.732538 TGCAGCTACACGTGACGATG 60.733 55.000 25.01 20.61 0.00 3.84
2042 4296 0.173481 ATGCAGCTACACGTGACGAT 59.827 50.000 25.01 8.24 0.00 3.73
2043 4297 0.732538 CATGCAGCTACACGTGACGA 60.733 55.000 25.01 5.96 0.00 4.20
2044 4298 0.732538 TCATGCAGCTACACGTGACG 60.733 55.000 25.01 13.32 0.00 4.35
2045 4299 1.325640 CATCATGCAGCTACACGTGAC 59.674 52.381 25.01 11.19 34.79 3.67
2046 4300 1.643880 CATCATGCAGCTACACGTGA 58.356 50.000 25.01 4.97 36.32 4.35
2047 4301 0.027194 GCATCATGCAGCTACACGTG 59.973 55.000 15.48 15.48 44.26 4.49
2048 4302 2.387309 GCATCATGCAGCTACACGT 58.613 52.632 4.20 0.00 44.26 4.49
2058 4312 2.667448 CGCCTATCAACATGCATCATGC 60.667 50.000 1.35 1.35 44.80 4.06
2059 4313 2.809696 TCGCCTATCAACATGCATCATG 59.190 45.455 0.00 5.35 46.18 3.07
2060 4314 2.810274 GTCGCCTATCAACATGCATCAT 59.190 45.455 0.00 0.00 0.00 2.45
2061 4315 2.158914 AGTCGCCTATCAACATGCATCA 60.159 45.455 0.00 0.00 0.00 3.07
2062 4316 2.478134 GAGTCGCCTATCAACATGCATC 59.522 50.000 0.00 0.00 0.00 3.91
2063 4317 2.158914 TGAGTCGCCTATCAACATGCAT 60.159 45.455 0.00 0.00 0.00 3.96
2064 4318 1.206849 TGAGTCGCCTATCAACATGCA 59.793 47.619 0.00 0.00 0.00 3.96
2065 4319 1.939974 TGAGTCGCCTATCAACATGC 58.060 50.000 0.00 0.00 0.00 4.06
2066 4320 4.944962 TTTTGAGTCGCCTATCAACATG 57.055 40.909 0.00 0.00 35.25 3.21
2067 4321 5.003804 ACTTTTTGAGTCGCCTATCAACAT 58.996 37.500 0.00 0.00 35.25 2.71
2068 4322 4.385825 ACTTTTTGAGTCGCCTATCAACA 58.614 39.130 0.00 0.00 35.25 3.33
2069 4323 5.049680 TGAACTTTTTGAGTCGCCTATCAAC 60.050 40.000 0.00 0.00 37.72 3.18
2070 4324 5.060506 TGAACTTTTTGAGTCGCCTATCAA 58.939 37.500 0.00 0.00 37.72 2.57
2071 4325 4.637276 TGAACTTTTTGAGTCGCCTATCA 58.363 39.130 0.00 0.00 37.72 2.15
2072 4326 5.607119 TTGAACTTTTTGAGTCGCCTATC 57.393 39.130 0.00 0.00 37.72 2.08
2073 4327 5.106157 CCATTGAACTTTTTGAGTCGCCTAT 60.106 40.000 0.00 0.00 37.72 2.57
2074 4328 4.215399 CCATTGAACTTTTTGAGTCGCCTA 59.785 41.667 0.00 0.00 37.72 3.93
2075 4329 3.004734 CCATTGAACTTTTTGAGTCGCCT 59.995 43.478 0.00 0.00 37.72 5.52
2076 4330 3.004315 TCCATTGAACTTTTTGAGTCGCC 59.996 43.478 0.00 0.00 37.72 5.54
2077 4331 4.223320 TCCATTGAACTTTTTGAGTCGC 57.777 40.909 0.00 0.00 37.72 5.19
2078 4332 6.901887 CGATATCCATTGAACTTTTTGAGTCG 59.098 38.462 0.00 0.00 37.72 4.18
2079 4333 7.974675 TCGATATCCATTGAACTTTTTGAGTC 58.025 34.615 0.00 0.00 37.72 3.36
2080 4334 7.921786 TCGATATCCATTGAACTTTTTGAGT 57.078 32.000 0.00 0.00 41.47 3.41
2081 4335 7.377928 GCATCGATATCCATTGAACTTTTTGAG 59.622 37.037 0.00 0.00 0.00 3.02
2082 4336 7.148103 TGCATCGATATCCATTGAACTTTTTGA 60.148 33.333 0.00 0.00 0.00 2.69
2083 4337 6.974048 TGCATCGATATCCATTGAACTTTTTG 59.026 34.615 0.00 0.00 0.00 2.44
2084 4338 7.067372 TCTGCATCGATATCCATTGAACTTTTT 59.933 33.333 0.00 0.00 0.00 1.94
2085 4339 6.543465 TCTGCATCGATATCCATTGAACTTTT 59.457 34.615 0.00 0.00 0.00 2.27
2086 4340 6.057533 TCTGCATCGATATCCATTGAACTTT 58.942 36.000 0.00 0.00 0.00 2.66
2087 4341 5.614308 TCTGCATCGATATCCATTGAACTT 58.386 37.500 0.00 0.00 0.00 2.66
2088 4342 5.219343 TCTGCATCGATATCCATTGAACT 57.781 39.130 0.00 0.00 0.00 3.01
2089 4343 5.929697 TTCTGCATCGATATCCATTGAAC 57.070 39.130 0.00 0.00 0.00 3.18
2090 4344 6.905578 CAATTCTGCATCGATATCCATTGAA 58.094 36.000 0.00 0.00 0.00 2.69
2091 4345 6.490566 CAATTCTGCATCGATATCCATTGA 57.509 37.500 0.00 0.00 0.00 2.57
2112 4366 4.249020 CACGCCGTTGCTGTGCAA 62.249 61.111 0.45 0.45 46.80 4.08
2115 4369 2.170260 CTAACCACGCCGTTGCTGTG 62.170 60.000 0.00 0.00 39.81 3.66
2116 4370 1.959226 CTAACCACGCCGTTGCTGT 60.959 57.895 0.00 0.00 34.43 4.40
2117 4371 1.225376 TTCTAACCACGCCGTTGCTG 61.225 55.000 0.00 0.00 34.43 4.41
2118 4372 1.070105 TTCTAACCACGCCGTTGCT 59.930 52.632 0.00 0.00 34.43 3.91
2119 4373 1.205820 GTTCTAACCACGCCGTTGC 59.794 57.895 0.00 0.00 0.00 4.17
2120 4374 0.233848 GTGTTCTAACCACGCCGTTG 59.766 55.000 0.00 0.00 0.00 4.10
2121 4375 1.216941 CGTGTTCTAACCACGCCGTT 61.217 55.000 0.00 0.00 35.56 4.44
2122 4376 1.662446 CGTGTTCTAACCACGCCGT 60.662 57.895 0.00 0.00 35.56 5.68
2123 4377 0.387112 TACGTGTTCTAACCACGCCG 60.387 55.000 12.31 0.00 45.02 6.46
2124 4378 1.063031 GTACGTGTTCTAACCACGCC 58.937 55.000 12.31 0.93 45.02 5.68
2125 4379 0.704551 CGTACGTGTTCTAACCACGC 59.295 55.000 7.22 0.00 45.02 5.34
2126 4380 2.036556 ACGTACGTGTTCTAACCACG 57.963 50.000 22.14 10.98 46.35 4.94
2127 4381 4.722194 TCATACGTACGTGTTCTAACCAC 58.278 43.478 30.25 0.00 0.00 4.16
2128 4382 4.672542 GCTCATACGTACGTGTTCTAACCA 60.673 45.833 30.25 7.71 0.00 3.67
2129 4383 3.788163 GCTCATACGTACGTGTTCTAACC 59.212 47.826 30.25 7.61 0.00 2.85
2130 4384 4.494764 CAGCTCATACGTACGTGTTCTAAC 59.505 45.833 30.25 13.26 0.00 2.34
2131 4385 4.154737 ACAGCTCATACGTACGTGTTCTAA 59.845 41.667 30.25 10.09 0.00 2.10
2132 4386 3.686241 ACAGCTCATACGTACGTGTTCTA 59.314 43.478 30.25 10.89 0.00 2.10
2133 4387 2.486982 ACAGCTCATACGTACGTGTTCT 59.513 45.455 30.25 16.40 0.00 3.01
2134 4388 2.860062 ACAGCTCATACGTACGTGTTC 58.140 47.619 30.25 14.53 0.00 3.18
2135 4389 3.293311 AACAGCTCATACGTACGTGTT 57.707 42.857 30.25 19.68 0.00 3.32
2136 4390 2.984471 CAAACAGCTCATACGTACGTGT 59.016 45.455 30.25 21.74 0.00 4.49
2137 4391 2.222508 GCAAACAGCTCATACGTACGTG 60.223 50.000 30.25 15.11 41.15 4.49
2138 4392 1.990563 GCAAACAGCTCATACGTACGT 59.009 47.619 25.98 25.98 41.15 3.57
2139 4393 2.696076 GCAAACAGCTCATACGTACG 57.304 50.000 15.01 15.01 41.15 3.67
2150 4404 4.749245 ACACAGTACATAAGCAAACAGC 57.251 40.909 0.00 0.00 46.19 4.40
2151 4405 9.509855 TTTTTAACACAGTACATAAGCAAACAG 57.490 29.630 0.00 0.00 0.00 3.16
2152 4406 9.509855 CTTTTTAACACAGTACATAAGCAAACA 57.490 29.630 0.00 0.00 0.00 2.83
2153 4407 8.964150 CCTTTTTAACACAGTACATAAGCAAAC 58.036 33.333 0.00 0.00 0.00 2.93
2154 4408 8.904834 TCCTTTTTAACACAGTACATAAGCAAA 58.095 29.630 0.00 0.00 0.00 3.68
2155 4409 8.347035 GTCCTTTTTAACACAGTACATAAGCAA 58.653 33.333 0.00 0.00 0.00 3.91
2156 4410 7.307514 CGTCCTTTTTAACACAGTACATAAGCA 60.308 37.037 0.00 0.00 0.00 3.91
2157 4411 7.013529 CGTCCTTTTTAACACAGTACATAAGC 58.986 38.462 0.00 0.00 0.00 3.09
2158 4412 7.172019 ACCGTCCTTTTTAACACAGTACATAAG 59.828 37.037 0.00 0.00 0.00 1.73
2159 4413 6.991531 ACCGTCCTTTTTAACACAGTACATAA 59.008 34.615 0.00 0.00 0.00 1.90
2160 4414 6.424509 CACCGTCCTTTTTAACACAGTACATA 59.575 38.462 0.00 0.00 0.00 2.29
2161 4415 5.237779 CACCGTCCTTTTTAACACAGTACAT 59.762 40.000 0.00 0.00 0.00 2.29
2162 4416 4.571580 CACCGTCCTTTTTAACACAGTACA 59.428 41.667 0.00 0.00 0.00 2.90
2163 4417 4.571984 ACACCGTCCTTTTTAACACAGTAC 59.428 41.667 0.00 0.00 0.00 2.73
2164 4418 4.768583 ACACCGTCCTTTTTAACACAGTA 58.231 39.130 0.00 0.00 0.00 2.74
2165 4419 3.613030 ACACCGTCCTTTTTAACACAGT 58.387 40.909 0.00 0.00 0.00 3.55
2166 4420 4.095185 TGAACACCGTCCTTTTTAACACAG 59.905 41.667 0.00 0.00 0.00 3.66
2167 4421 4.008330 TGAACACCGTCCTTTTTAACACA 58.992 39.130 0.00 0.00 0.00 3.72
2168 4422 4.619437 TGAACACCGTCCTTTTTAACAC 57.381 40.909 0.00 0.00 0.00 3.32
2169 4423 6.939132 TTATGAACACCGTCCTTTTTAACA 57.061 33.333 0.00 0.00 0.00 2.41
2175 4429 8.403236 GCTTAAATATTATGAACACCGTCCTTT 58.597 33.333 0.00 0.00 0.00 3.11
2176 4430 7.554835 TGCTTAAATATTATGAACACCGTCCTT 59.445 33.333 0.00 0.00 0.00 3.36
2177 4431 7.012044 GTGCTTAAATATTATGAACACCGTCCT 59.988 37.037 0.00 0.00 0.00 3.85
2178 4432 7.130269 GTGCTTAAATATTATGAACACCGTCC 58.870 38.462 0.00 0.00 0.00 4.79
2179 4433 6.844279 CGTGCTTAAATATTATGAACACCGTC 59.156 38.462 0.00 0.00 0.00 4.79
2180 4434 6.238266 CCGTGCTTAAATATTATGAACACCGT 60.238 38.462 0.00 0.00 0.00 4.83
2181 4435 6.133392 CCGTGCTTAAATATTATGAACACCG 58.867 40.000 0.00 0.00 0.00 4.94
2182 4436 7.023197 ACCGTGCTTAAATATTATGAACACC 57.977 36.000 0.00 0.00 0.00 4.16
2183 4437 8.178964 TGAACCGTGCTTAAATATTATGAACAC 58.821 33.333 0.00 0.00 0.00 3.32
2184 4438 8.178964 GTGAACCGTGCTTAAATATTATGAACA 58.821 33.333 0.00 0.00 0.00 3.18
2185 4439 8.395633 AGTGAACCGTGCTTAAATATTATGAAC 58.604 33.333 0.00 0.00 0.00 3.18
2186 4440 8.500753 AGTGAACCGTGCTTAAATATTATGAA 57.499 30.769 0.00 0.00 0.00 2.57
2187 4441 7.985184 AGAGTGAACCGTGCTTAAATATTATGA 59.015 33.333 0.00 0.00 0.00 2.15
2188 4442 8.142994 AGAGTGAACCGTGCTTAAATATTATG 57.857 34.615 0.00 0.00 0.00 1.90
2189 4443 8.204836 AGAGAGTGAACCGTGCTTAAATATTAT 58.795 33.333 0.00 0.00 0.00 1.28
2190 4444 7.553334 AGAGAGTGAACCGTGCTTAAATATTA 58.447 34.615 0.00 0.00 0.00 0.98
2191 4445 6.407202 AGAGAGTGAACCGTGCTTAAATATT 58.593 36.000 0.00 0.00 0.00 1.28
2192 4446 5.978814 AGAGAGTGAACCGTGCTTAAATAT 58.021 37.500 0.00 0.00 0.00 1.28
2193 4447 5.401531 AGAGAGTGAACCGTGCTTAAATA 57.598 39.130 0.00 0.00 0.00 1.40
2194 4448 4.273148 AGAGAGTGAACCGTGCTTAAAT 57.727 40.909 0.00 0.00 0.00 1.40
2195 4449 3.746045 AGAGAGTGAACCGTGCTTAAA 57.254 42.857 0.00 0.00 0.00 1.52
2196 4450 3.746045 AAGAGAGTGAACCGTGCTTAA 57.254 42.857 0.00 0.00 0.00 1.85
2197 4451 3.746045 AAAGAGAGTGAACCGTGCTTA 57.254 42.857 0.00 0.00 0.00 3.09
2198 4452 2.622064 AAAGAGAGTGAACCGTGCTT 57.378 45.000 0.00 0.00 0.00 3.91
2199 4453 2.622064 AAAAGAGAGTGAACCGTGCT 57.378 45.000 0.00 0.00 0.00 4.40
2200 4454 2.031944 GGAAAAAGAGAGTGAACCGTGC 60.032 50.000 0.00 0.00 0.00 5.34
2201 4455 3.202906 TGGAAAAAGAGAGTGAACCGTG 58.797 45.455 0.00 0.00 0.00 4.94
2202 4456 3.553828 TGGAAAAAGAGAGTGAACCGT 57.446 42.857 0.00 0.00 0.00 4.83
2203 4457 3.365364 GCATGGAAAAAGAGAGTGAACCG 60.365 47.826 0.00 0.00 0.00 4.44
2204 4458 3.057245 GGCATGGAAAAAGAGAGTGAACC 60.057 47.826 0.00 0.00 0.00 3.62
2205 4459 3.569701 TGGCATGGAAAAAGAGAGTGAAC 59.430 43.478 0.00 0.00 0.00 3.18
2206 4460 3.569701 GTGGCATGGAAAAAGAGAGTGAA 59.430 43.478 0.00 0.00 0.00 3.18
2207 4461 3.149196 GTGGCATGGAAAAAGAGAGTGA 58.851 45.455 0.00 0.00 0.00 3.41
2208 4462 3.152341 AGTGGCATGGAAAAAGAGAGTG 58.848 45.455 0.00 0.00 0.00 3.51
2209 4463 3.515602 AGTGGCATGGAAAAAGAGAGT 57.484 42.857 0.00 0.00 0.00 3.24
2210 4464 4.861102 AAAGTGGCATGGAAAAAGAGAG 57.139 40.909 0.00 0.00 0.00 3.20
2211 4465 5.612725 AAAAAGTGGCATGGAAAAAGAGA 57.387 34.783 0.00 0.00 0.00 3.10
2230 4484 4.050553 CGTCGTGGTTACTCCTACAAAAA 58.949 43.478 0.00 0.00 37.07 1.94
2231 4485 3.068024 ACGTCGTGGTTACTCCTACAAAA 59.932 43.478 0.00 0.00 37.07 2.44
2232 4486 2.622942 ACGTCGTGGTTACTCCTACAAA 59.377 45.455 0.00 0.00 37.07 2.83
2233 4487 2.030893 CACGTCGTGGTTACTCCTACAA 60.031 50.000 17.75 0.00 37.07 2.41
2234 4488 1.536766 CACGTCGTGGTTACTCCTACA 59.463 52.381 17.75 0.00 37.07 2.74
2235 4489 1.537202 ACACGTCGTGGTTACTCCTAC 59.463 52.381 27.77 0.00 37.94 3.18
2236 4490 1.536766 CACACGTCGTGGTTACTCCTA 59.463 52.381 27.77 0.00 42.34 2.94
2237 4491 0.313043 CACACGTCGTGGTTACTCCT 59.687 55.000 27.77 2.67 42.34 3.69
2238 4492 2.805277 CACACGTCGTGGTTACTCC 58.195 57.895 27.77 0.00 42.34 3.85
2246 4500 0.850217 CACTAACACCACACGTCGTG 59.150 55.000 23.40 23.40 45.92 4.35
2247 4501 0.457035 ACACTAACACCACACGTCGT 59.543 50.000 0.00 0.00 0.00 4.34
2248 4502 1.126079 GACACTAACACCACACGTCG 58.874 55.000 0.00 0.00 0.00 5.12
2249 4503 1.068127 AGGACACTAACACCACACGTC 59.932 52.381 0.00 0.00 0.00 4.34
2250 4504 1.117150 AGGACACTAACACCACACGT 58.883 50.000 0.00 0.00 0.00 4.49
2251 4505 1.497991 CAGGACACTAACACCACACG 58.502 55.000 0.00 0.00 0.00 4.49
2252 4506 1.140252 ACCAGGACACTAACACCACAC 59.860 52.381 0.00 0.00 0.00 3.82
2253 4507 1.414919 GACCAGGACACTAACACCACA 59.585 52.381 0.00 0.00 0.00 4.17
2254 4508 1.604693 CGACCAGGACACTAACACCAC 60.605 57.143 0.00 0.00 0.00 4.16
2255 4509 0.677288 CGACCAGGACACTAACACCA 59.323 55.000 0.00 0.00 0.00 4.17
2256 4510 0.037605 CCGACCAGGACACTAACACC 60.038 60.000 0.00 0.00 45.00 4.16
2257 4511 0.963962 TCCGACCAGGACACTAACAC 59.036 55.000 0.00 0.00 45.98 3.32
2258 4512 3.443044 TCCGACCAGGACACTAACA 57.557 52.632 0.00 0.00 45.98 2.41
2267 4521 1.471676 GCTTATCTGTGTCCGACCAGG 60.472 57.143 13.74 0.00 42.97 4.45
2268 4522 1.204704 TGCTTATCTGTGTCCGACCAG 59.795 52.381 9.54 9.54 0.00 4.00
2269 4523 1.067142 GTGCTTATCTGTGTCCGACCA 60.067 52.381 0.00 0.00 0.00 4.02
2270 4524 1.641577 GTGCTTATCTGTGTCCGACC 58.358 55.000 0.00 0.00 0.00 4.79
2271 4525 1.269166 CGTGCTTATCTGTGTCCGAC 58.731 55.000 0.00 0.00 0.00 4.79
2272 4526 0.885879 ACGTGCTTATCTGTGTCCGA 59.114 50.000 0.00 0.00 0.00 4.55
2273 4527 2.554806 TACGTGCTTATCTGTGTCCG 57.445 50.000 0.00 0.00 0.00 4.79
2274 4528 5.184340 ACTATACGTGCTTATCTGTGTCC 57.816 43.478 0.00 0.00 0.00 4.02
2275 4529 6.957150 ACTACTATACGTGCTTATCTGTGTC 58.043 40.000 0.00 0.00 0.00 3.67
2276 4530 6.939132 ACTACTATACGTGCTTATCTGTGT 57.061 37.500 0.00 0.00 0.00 3.72
2277 4531 8.085720 ACTACTACTATACGTGCTTATCTGTG 57.914 38.462 0.00 0.00 0.00 3.66
2278 4532 8.149647 AGACTACTACTATACGTGCTTATCTGT 58.850 37.037 0.00 0.00 0.00 3.41
2279 4533 8.537049 AGACTACTACTATACGTGCTTATCTG 57.463 38.462 0.00 0.00 0.00 2.90
2280 4534 8.587608 AGAGACTACTACTATACGTGCTTATCT 58.412 37.037 0.00 0.00 0.00 1.98
2281 4535 8.761575 AGAGACTACTACTATACGTGCTTATC 57.238 38.462 0.00 0.00 0.00 1.75
2284 4538 9.558396 AAATAGAGACTACTACTATACGTGCTT 57.442 33.333 0.00 0.00 0.00 3.91
2285 4539 9.558396 AAAATAGAGACTACTACTATACGTGCT 57.442 33.333 0.00 0.00 0.00 4.40
2297 4551 8.763601 ACTGCTCCATTAAAAATAGAGACTACT 58.236 33.333 0.16 0.00 0.00 2.57
2298 4552 8.950208 ACTGCTCCATTAAAAATAGAGACTAC 57.050 34.615 0.16 0.00 0.00 2.73
2301 4555 8.268850 TCAACTGCTCCATTAAAAATAGAGAC 57.731 34.615 0.16 0.00 0.00 3.36
2310 4564 6.349300 GGAGACTATCAACTGCTCCATTAAA 58.651 40.000 0.00 0.00 43.55 1.52
2311 4565 5.451937 CGGAGACTATCAACTGCTCCATTAA 60.452 44.000 0.00 0.00 44.14 1.40
2326 4580 4.430908 GAAAATTGACCGACGGAGACTAT 58.569 43.478 23.38 10.65 0.00 2.12
2372 4631 2.491022 GGAGGTGGGATCGAGGACG 61.491 68.421 0.00 0.00 41.26 4.79
2820 5412 1.426041 GGTGACACGAGTGCAACGTT 61.426 55.000 15.70 0.00 45.86 3.99
2914 5507 1.807886 GCCAGCAGCAGGAAATCAG 59.192 57.895 8.31 0.00 42.97 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.