Multiple sequence alignment - TraesCS5D01G057800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G057800 chr5D 100.000 5482 0 0 1 5482 54679380 54684861 0.000000e+00 10124
1 TraesCS5D01G057800 chr5B 93.562 4986 234 50 1 4940 57432836 57437780 0.000000e+00 7348
2 TraesCS5D01G057800 chr5B 95.177 311 12 2 5175 5482 57441328 57441638 6.380000e-134 488
3 TraesCS5D01G057800 chr5B 94.400 250 14 0 4932 5181 57440469 57440718 8.610000e-103 385
4 TraesCS5D01G057800 chr5B 96.190 105 4 0 4216 4320 57437099 57437203 7.300000e-39 172
5 TraesCS5D01G057800 chr5A 91.541 4043 222 67 386 4352 42618463 42622461 0.000000e+00 5461
6 TraesCS5D01G057800 chr5A 92.925 848 40 10 4216 5055 42622361 42623196 0.000000e+00 1216
7 TraesCS5D01G057800 chr5A 86.822 387 34 11 2 388 42617838 42618207 3.050000e-112 416
8 TraesCS5D01G057800 chr3A 93.963 381 20 2 1140 1520 631787683 631788060 1.710000e-159 573
9 TraesCS5D01G057800 chr6B 91.197 284 25 0 1140 1423 669953799 669954082 2.400000e-103 387


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G057800 chr5D 54679380 54684861 5481 False 10124.000000 10124 100.000000 1 5482 1 chr5D.!!$F1 5481
1 TraesCS5D01G057800 chr5B 57432836 57441638 8802 False 2098.250000 7348 94.832250 1 5482 4 chr5B.!!$F1 5481
2 TraesCS5D01G057800 chr5A 42617838 42623196 5358 False 2364.333333 5461 90.429333 2 5055 3 chr5A.!!$F1 5053

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
745 1012 0.178975 TAACAACCCCTGGCAACCTG 60.179 55.0 0.00 0.00 0.00 4.00 F
1166 1441 0.605319 GCGATGTGGTTCCACTCCAA 60.605 55.0 20.48 3.26 37.78 3.53 F
1498 1775 1.522668 TCCGTGGATTGTTTGCTCTG 58.477 50.0 0.00 0.00 0.00 3.35 F
2466 2779 0.179073 CTTCCCGGCTGGATACACTG 60.179 60.0 15.09 0.00 46.17 3.66 F
4175 4497 0.181350 ATTCATTCGGAGGTGGAGGC 59.819 55.0 0.00 0.00 0.00 4.70 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1884 2190 1.202371 ACAAGAGAAAGTGACACGCGA 60.202 47.619 15.93 0.0 0.00 5.87 R
2213 2526 2.094675 GCATCCATTATGGGGATTCCG 58.905 52.381 11.76 0.0 42.47 4.30 R
2931 3245 2.164827 ACAACAAAAGTCCGAACCAACC 59.835 45.455 0.00 0.0 0.00 3.77 R
4220 4587 0.464735 CACCTGAACGACCAAACCCA 60.465 55.000 0.00 0.0 0.00 4.51 R
5040 8114 0.954452 CCCTGAGCCACTCAACAAAC 59.046 55.000 0.00 0.0 40.18 2.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 6.698359 TGTGAACTTTCTTTTCAAAAACCG 57.302 33.333 0.00 0.00 34.78 4.44
77 79 1.822990 TGAAGTATGTGTCCCCTCGAC 59.177 52.381 0.00 0.00 42.33 4.20
83 85 3.065306 TGTCCCCTCGACGCAAAT 58.935 55.556 0.00 0.00 45.23 2.32
86 88 0.458669 GTCCCCTCGACGCAAATCTA 59.541 55.000 0.00 0.00 0.00 1.98
256 259 2.651841 AGCTTTCCTCCCTTCCATCTTT 59.348 45.455 0.00 0.00 0.00 2.52
257 260 2.757314 GCTTTCCTCCCTTCCATCTTTG 59.243 50.000 0.00 0.00 0.00 2.77
258 261 3.815757 GCTTTCCTCCCTTCCATCTTTGT 60.816 47.826 0.00 0.00 0.00 2.83
270 273 6.863126 CCTTCCATCTTTGTTGTTTCATACAC 59.137 38.462 0.00 0.00 36.21 2.90
350 353 3.582444 CATTTCTATGCTCGTGACAGC 57.418 47.619 1.00 1.00 40.13 4.40
384 387 5.634896 CAGCTAATTCTTGATCACAACACC 58.365 41.667 0.00 0.00 32.27 4.16
532 798 2.851263 AACAACCCAGTCGAGCAATA 57.149 45.000 0.00 0.00 0.00 1.90
555 821 2.115266 CAGGGCCTCCAAAACCGT 59.885 61.111 0.95 0.00 34.83 4.83
629 895 4.742201 CTGACACCCGGGCTCACG 62.742 72.222 24.08 11.43 0.00 4.35
645 912 4.796231 CGGAACTCGGGCTCCACG 62.796 72.222 5.41 0.00 34.75 4.94
745 1012 0.178975 TAACAACCCCTGGCAACCTG 60.179 55.000 0.00 0.00 0.00 4.00
757 1024 2.798976 GCAACCTGCATTCTTTCACA 57.201 45.000 0.00 0.00 44.26 3.58
762 1029 3.554934 ACCTGCATTCTTTCACAGACAA 58.445 40.909 0.00 0.00 31.67 3.18
774 1041 1.077265 CAGACAAATGGGCCCCACT 59.923 57.895 22.27 6.49 35.80 4.00
800 1067 2.122954 GACCTCCTGACCCCACCT 59.877 66.667 0.00 0.00 0.00 4.00
876 1143 2.139118 GCAGAAATATCTCTCGTGGCC 58.861 52.381 0.00 0.00 32.03 5.36
927 1202 2.760385 CACTCCTCGTCCCCTCCC 60.760 72.222 0.00 0.00 0.00 4.30
928 1203 3.273654 ACTCCTCGTCCCCTCCCA 61.274 66.667 0.00 0.00 0.00 4.37
930 1205 4.393778 TCCTCGTCCCCTCCCACC 62.394 72.222 0.00 0.00 0.00 4.61
1166 1441 0.605319 GCGATGTGGTTCCACTCCAA 60.605 55.000 20.48 3.26 37.78 3.53
1466 1742 4.032900 CCTTCGATTGGAACGTGATTACTG 59.967 45.833 0.00 0.00 0.00 2.74
1469 1745 3.000322 CGATTGGAACGTGATTACTGCTC 60.000 47.826 0.00 0.00 0.00 4.26
1470 1746 3.678056 TTGGAACGTGATTACTGCTCT 57.322 42.857 0.00 0.00 0.00 4.09
1474 1751 4.246458 GGAACGTGATTACTGCTCTCTTT 58.754 43.478 0.00 0.00 0.00 2.52
1478 1755 6.458232 ACGTGATTACTGCTCTCTTTATCT 57.542 37.500 0.00 0.00 0.00 1.98
1498 1775 1.522668 TCCGTGGATTGTTTGCTCTG 58.477 50.000 0.00 0.00 0.00 3.35
1502 1779 2.229792 GTGGATTGTTTGCTCTGTGGA 58.770 47.619 0.00 0.00 0.00 4.02
1503 1780 2.030805 GTGGATTGTTTGCTCTGTGGAC 60.031 50.000 0.00 0.00 0.00 4.02
1504 1781 2.229792 GGATTGTTTGCTCTGTGGACA 58.770 47.619 0.00 0.00 0.00 4.02
1505 1782 2.030805 GGATTGTTTGCTCTGTGGACAC 60.031 50.000 0.00 0.00 0.00 3.67
1538 1815 8.252417 TGATTGATTGCTGCACAGTTAATTATT 58.748 29.630 0.00 0.00 26.43 1.40
1539 1816 9.734620 GATTGATTGCTGCACAGTTAATTATTA 57.265 29.630 0.00 0.00 26.43 0.98
1573 1851 3.307506 AGGACATCTCCTCTTGATGGAG 58.692 50.000 8.32 3.57 44.59 3.86
1579 1857 2.354259 CTCCTCTTGATGGAGTGTTGC 58.646 52.381 0.00 0.00 44.42 4.17
1685 1980 3.042682 TGGTTTTCCACTACCTCACTGA 58.957 45.455 0.00 0.00 46.22 3.41
1717 2016 2.095718 GCAACTGTGATCTTTCCGTTCC 60.096 50.000 0.00 0.00 0.00 3.62
1856 2162 2.507484 AGCAGTTCATTAGCTGTTGCA 58.493 42.857 0.00 0.00 42.74 4.08
1883 2189 9.698309 ACTATCACTCTGTATTATTATGTGTGC 57.302 33.333 0.00 0.00 0.00 4.57
1884 2190 9.920133 CTATCACTCTGTATTATTATGTGTGCT 57.080 33.333 0.00 0.00 0.00 4.40
1989 2297 7.699709 TCATCCCTGTATAGGTCCAATTTTA 57.300 36.000 4.65 0.00 42.96 1.52
1991 2299 8.732854 TCATCCCTGTATAGGTCCAATTTTATT 58.267 33.333 4.65 0.00 42.96 1.40
1993 2301 9.951866 ATCCCTGTATAGGTCCAATTTTATTTT 57.048 29.630 4.65 0.00 42.96 1.82
1994 2302 9.416284 TCCCTGTATAGGTCCAATTTTATTTTC 57.584 33.333 4.65 0.00 42.96 2.29
2002 2311 8.978874 AGGTCCAATTTTATTTTCTTTTTGCT 57.021 26.923 0.00 0.00 0.00 3.91
2091 2402 3.155093 CACAATTAGTGGATGCCTTGC 57.845 47.619 0.00 0.00 44.69 4.01
2213 2526 3.554960 GGACAGGGAAAACTTTGGCATTC 60.555 47.826 0.00 0.00 0.00 2.67
2361 2674 5.526846 GTCACCTCAATTGAATCTCTGGATC 59.473 44.000 9.88 0.00 0.00 3.36
2466 2779 0.179073 CTTCCCGGCTGGATACACTG 60.179 60.000 15.09 0.00 46.17 3.66
2520 2833 0.905357 TGAGAGTTCTTAGCCAGGGC 59.095 55.000 0.97 0.97 42.33 5.19
2745 3058 1.807139 TACGCAAGCTGATGCAGAAA 58.193 45.000 10.83 0.00 46.76 2.52
2931 3245 6.991485 ACTTCAATTTTGTTATGTTCGCTG 57.009 33.333 0.00 0.00 0.00 5.18
2956 3270 3.103007 GGTTCGGACTTTTGTTGTTTCG 58.897 45.455 0.00 0.00 0.00 3.46
3032 3346 2.560504 TCTGGCGGTGTAAATGCATAG 58.439 47.619 0.00 0.00 0.00 2.23
3033 3347 2.169561 TCTGGCGGTGTAAATGCATAGA 59.830 45.455 0.00 0.00 0.00 1.98
3412 3730 4.996788 ATTGATTCAGGCAAGGATGTTC 57.003 40.909 0.00 0.00 0.00 3.18
3993 4315 0.543749 GTAGAGCTGTCAGGGGCATT 59.456 55.000 1.14 0.00 0.00 3.56
4036 4358 6.200878 AGTTTAAGGAGGTGAGATTTTCCA 57.799 37.500 0.00 0.00 32.02 3.53
4160 4482 5.754782 ACAATGGCTAGTGGTTATGATTCA 58.245 37.500 1.76 0.00 0.00 2.57
4175 4497 0.181350 ATTCATTCGGAGGTGGAGGC 59.819 55.000 0.00 0.00 0.00 4.70
4319 4692 2.750237 GGTGGTGGTGGATTCGGC 60.750 66.667 0.00 0.00 0.00 5.54
4416 4789 1.896660 CGGTCTGGTGGGTTTGGTG 60.897 63.158 0.00 0.00 0.00 4.17
4623 4997 4.927267 TGGTCTGATTCTTGTTGGGTAT 57.073 40.909 0.00 0.00 0.00 2.73
4625 4999 5.640147 TGGTCTGATTCTTGTTGGGTATTT 58.360 37.500 0.00 0.00 0.00 1.40
4724 5098 6.877611 AATCACGAGGCTTTCTTCTTTTTA 57.122 33.333 0.00 0.00 0.00 1.52
4735 5109 4.823790 TCTTCTTTTTACGTTTCCTGCC 57.176 40.909 0.00 0.00 0.00 4.85
4776 5150 7.417342 GCAGGGTTCCTTGTAAAATATATGCAA 60.417 37.037 0.00 0.00 0.00 4.08
4808 5182 6.159293 TGTCTTCTGCGGATCACAATATATC 58.841 40.000 0.00 0.00 0.00 1.63
4810 5184 6.309980 GTCTTCTGCGGATCACAATATATCTG 59.690 42.308 0.00 0.00 0.00 2.90
4879 5256 5.398012 GGACCTTATCTAATGGCCAGAACTT 60.398 44.000 13.05 2.46 0.00 2.66
5040 8114 9.399403 GCTTCTGAGTTAAAAACCAAGAATAAG 57.601 33.333 5.65 0.00 34.67 1.73
5076 8150 1.843206 AGGGTGGTGTTTTGCCAAAAT 59.157 42.857 5.81 0.00 37.81 1.82
5078 8152 3.456277 AGGGTGGTGTTTTGCCAAAATAA 59.544 39.130 5.81 0.00 37.81 1.40
5082 8156 6.486993 GGGTGGTGTTTTGCCAAAATAAATAA 59.513 34.615 5.81 0.00 37.81 1.40
5138 8212 3.518590 CGCCCGAACAGAATTTACTACT 58.481 45.455 0.00 0.00 0.00 2.57
5172 8246 1.475403 TTTTCAGTGGGGTTTGCGAA 58.525 45.000 0.00 0.00 0.00 4.70
5184 8874 3.549423 GGGTTTGCGAACACCTAAGTTTC 60.549 47.826 18.51 0.00 37.51 2.78
5189 8879 5.401531 TGCGAACACCTAAGTTTCTATCT 57.598 39.130 0.00 0.00 0.00 1.98
5196 8886 9.485206 GAACACCTAAGTTTCTATCTGTTACAA 57.515 33.333 0.00 0.00 0.00 2.41
5263 8955 7.409465 AGAAATACACTCGAAAACTCTCAAC 57.591 36.000 0.00 0.00 0.00 3.18
5304 8996 6.623549 GCTGCAAAGAACAAGCATCTAACATA 60.624 38.462 0.00 0.00 37.68 2.29
5305 8997 7.213216 TGCAAAGAACAAGCATCTAACATAA 57.787 32.000 0.00 0.00 32.55 1.90
5309 9001 9.121517 CAAAGAACAAGCATCTAACATAAACAG 57.878 33.333 0.00 0.00 0.00 3.16
5397 9089 9.515226 AAAGCATCTTGGTACATTAGAAACTTA 57.485 29.630 0.00 0.00 39.30 2.24
5402 9094 7.446769 TCTTGGTACATTAGAAACTTAGCACA 58.553 34.615 0.00 0.00 39.30 4.57
5467 9160 1.655484 ATTGATGCGATGCGACAGAA 58.345 45.000 0.00 0.00 0.00 3.02
5468 9161 1.437625 TTGATGCGATGCGACAGAAA 58.562 45.000 0.00 0.00 0.00 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 6.199393 GGACACATACTTCAAAAGTGTTCAC 58.801 40.000 2.65 0.00 42.86 3.18
175 178 0.671251 GTCCATTTGGGTTTGCACGA 59.329 50.000 0.00 0.00 38.11 4.35
182 185 0.105760 TGGCTGTGTCCATTTGGGTT 60.106 50.000 0.00 0.00 38.11 4.11
256 259 6.405286 CCTTGGTCTTTGTGTATGAAACAACA 60.405 38.462 0.00 0.00 40.63 3.33
257 260 5.977129 CCTTGGTCTTTGTGTATGAAACAAC 59.023 40.000 0.00 0.00 40.63 3.32
258 261 5.888724 TCCTTGGTCTTTGTGTATGAAACAA 59.111 36.000 0.00 0.00 40.63 2.83
270 273 2.335712 GCGCCCTCCTTGGTCTTTG 61.336 63.158 0.00 0.00 0.00 2.77
350 353 5.583854 TCAAGAATTAGCTGCTTAGCTTCAG 59.416 40.000 7.79 0.00 43.52 3.02
523 789 0.107214 CCCTGGGCTTTATTGCTCGA 60.107 55.000 0.00 0.00 35.92 4.04
625 891 3.379445 GGAGCCCGAGTTCCGTGA 61.379 66.667 0.00 0.00 33.27 4.35
629 895 3.358076 CTCGTGGAGCCCGAGTTCC 62.358 68.421 15.00 0.00 45.09 3.62
630 896 2.182030 CTCGTGGAGCCCGAGTTC 59.818 66.667 15.00 0.00 45.09 3.01
645 912 2.099427 GGTCAGACGTAGGGAATGACTC 59.901 54.545 13.18 4.51 40.07 3.36
686 953 0.764890 TGGGGTGAGTGAAGAGGTTG 59.235 55.000 0.00 0.00 0.00 3.77
726 993 0.178975 CAGGTTGCCAGGGGTTGTTA 60.179 55.000 0.00 0.00 0.00 2.41
745 1012 4.240096 CCCATTTGTCTGTGAAAGAATGC 58.760 43.478 0.00 0.00 36.40 3.56
749 1016 2.238521 GGCCCATTTGTCTGTGAAAGA 58.761 47.619 0.00 0.00 0.00 2.52
750 1017 1.273327 GGGCCCATTTGTCTGTGAAAG 59.727 52.381 19.95 0.00 0.00 2.62
757 1024 0.542702 CAAGTGGGGCCCATTTGTCT 60.543 55.000 38.76 25.45 43.30 3.41
762 1029 1.536174 CAACCAAGTGGGGCCCATT 60.536 57.895 31.48 23.77 42.91 3.16
876 1143 1.423921 AGGGAATGGGGTTAATAGGCG 59.576 52.381 0.00 0.00 0.00 5.52
927 1202 0.042731 TAGGGTTCTGAGGAGGGGTG 59.957 60.000 0.00 0.00 0.00 4.61
928 1203 0.797579 TTAGGGTTCTGAGGAGGGGT 59.202 55.000 0.00 0.00 0.00 4.95
930 1205 1.560146 GGTTTAGGGTTCTGAGGAGGG 59.440 57.143 0.00 0.00 0.00 4.30
936 1211 1.681076 GCGGGGTTTAGGGTTCTGA 59.319 57.895 0.00 0.00 0.00 3.27
1443 1719 4.032900 CAGTAATCACGTTCCAATCGAAGG 59.967 45.833 0.00 0.00 41.25 3.46
1466 1742 3.802948 TCCACGGAAGATAAAGAGAGC 57.197 47.619 0.00 0.00 0.00 4.09
1469 1745 6.546395 CAAACAATCCACGGAAGATAAAGAG 58.454 40.000 0.00 0.00 0.00 2.85
1470 1746 5.106317 GCAAACAATCCACGGAAGATAAAGA 60.106 40.000 0.00 0.00 0.00 2.52
1474 1751 3.938963 GAGCAAACAATCCACGGAAGATA 59.061 43.478 0.00 0.00 0.00 1.98
1478 1755 1.879380 CAGAGCAAACAATCCACGGAA 59.121 47.619 0.00 0.00 0.00 4.30
1498 1775 2.221169 TCAATCAAGCAGTGTGTCCAC 58.779 47.619 0.00 0.00 42.17 4.02
1502 1779 2.889045 AGCAATCAATCAAGCAGTGTGT 59.111 40.909 0.00 0.00 0.00 3.72
1503 1780 3.242518 CAGCAATCAATCAAGCAGTGTG 58.757 45.455 0.00 0.00 0.00 3.82
1504 1781 2.352421 GCAGCAATCAATCAAGCAGTGT 60.352 45.455 0.00 0.00 0.00 3.55
1505 1782 2.259618 GCAGCAATCAATCAAGCAGTG 58.740 47.619 0.00 0.00 0.00 3.66
1616 1894 1.339535 TGCTCCGCAATTCCACACATA 60.340 47.619 0.00 0.00 34.76 2.29
1622 1917 1.838112 AGAAATGCTCCGCAATTCCA 58.162 45.000 11.73 0.00 46.05 3.53
1643 1938 5.745227 CCACAGAAAACTATCATAGTGGGT 58.255 41.667 0.00 0.00 41.08 4.51
1661 1956 3.139077 GTGAGGTAGTGGAAAACCACAG 58.861 50.000 19.27 0.00 42.56 3.66
1717 2016 5.883661 AGCAATAAAACATCTGTCCATTCG 58.116 37.500 0.00 0.00 0.00 3.34
1883 2189 1.453524 CAAGAGAAAGTGACACGCGAG 59.546 52.381 15.93 7.88 0.00 5.03
1884 2190 1.202371 ACAAGAGAAAGTGACACGCGA 60.202 47.619 15.93 0.00 0.00 5.87
1991 2299 9.308318 GACAACATAAAGGTAAGCAAAAAGAAA 57.692 29.630 0.00 0.00 0.00 2.52
1993 2301 8.001881 TGACAACATAAAGGTAAGCAAAAAGA 57.998 30.769 0.00 0.00 0.00 2.52
1994 2302 8.816640 ATGACAACATAAAGGTAAGCAAAAAG 57.183 30.769 0.00 0.00 34.71 2.27
1998 2307 7.446931 TGAAGATGACAACATAAAGGTAAGCAA 59.553 33.333 0.00 0.00 36.82 3.91
2091 2402 6.367695 GGAAGGGAATTTTAACATCCAAAACG 59.632 38.462 0.00 0.00 34.82 3.60
2213 2526 2.094675 GCATCCATTATGGGGATTCCG 58.905 52.381 11.76 0.00 42.47 4.30
2361 2674 3.199880 GGATGTATTCCAGGTCTGTGG 57.800 52.381 0.00 0.00 44.74 4.17
2520 2833 3.059188 GTGTCCCAACAACTACATCAACG 60.059 47.826 0.00 0.00 37.08 4.10
2745 3058 6.015856 CGACTATGACAGGATCTTTGAGGTAT 60.016 42.308 5.03 0.00 0.00 2.73
2931 3245 2.164827 ACAACAAAAGTCCGAACCAACC 59.835 45.455 0.00 0.00 0.00 3.77
2956 3270 8.649973 ACACTAATGCTTATCTTACTAGCAAC 57.350 34.615 0.00 0.00 46.78 4.17
2993 3307 8.081633 CCGCCAGAATAATTTTCTTAATATGCA 58.918 33.333 0.00 0.00 0.00 3.96
3412 3730 9.838339 AAAATATTCCATTGGTACTACAGAGAG 57.162 33.333 1.86 0.00 0.00 3.20
3993 4315 0.684535 TGCCTCCAACGTCATTCTCA 59.315 50.000 0.00 0.00 0.00 3.27
4036 4358 3.521560 TCGAGCAGCGACTTAAAATGAT 58.478 40.909 0.00 0.00 45.59 2.45
4160 4482 3.470888 CCGCCTCCACCTCCGAAT 61.471 66.667 0.00 0.00 0.00 3.34
4220 4587 0.464735 CACCTGAACGACCAAACCCA 60.465 55.000 0.00 0.00 0.00 4.51
4319 4692 0.748005 ATCGGCCAAACCCTGAATCG 60.748 55.000 2.24 0.00 33.26 3.34
4623 4997 4.151689 CACGCTAGAAATTCGACCTTGAAA 59.848 41.667 0.00 0.00 0.00 2.69
4625 4999 3.250744 CACGCTAGAAATTCGACCTTGA 58.749 45.455 0.00 0.00 0.00 3.02
4693 5067 5.440610 AGAAAGCCTCGTGATTATTTCCAT 58.559 37.500 0.00 0.00 0.00 3.41
4724 5098 2.725203 TAGCTTGCGGCAGGAAACGT 62.725 55.000 16.93 0.00 44.79 3.99
4735 5109 1.642215 CTGCTGCAGATAGCTTGCG 59.358 57.895 24.88 0.00 45.94 4.85
4776 5150 1.344438 TCCGCAGAAGACAAGACACAT 59.656 47.619 0.00 0.00 0.00 3.21
4957 8031 2.020836 GAGATGGTTTACACGCCGCG 62.021 60.000 12.14 12.14 0.00 6.46
5040 8114 0.954452 CCCTGAGCCACTCAACAAAC 59.046 55.000 0.00 0.00 40.18 2.93
5088 8162 5.067674 AGCATTGTGTCTTTTGCTTGTCTTA 59.932 36.000 0.00 0.00 42.52 2.10
5092 8166 3.491447 GGAGCATTGTGTCTTTTGCTTGT 60.491 43.478 0.00 0.00 44.98 3.16
5094 8168 2.694628 TGGAGCATTGTGTCTTTTGCTT 59.305 40.909 0.00 0.00 44.98 3.91
5096 8170 2.397549 GTGGAGCATTGTGTCTTTTGC 58.602 47.619 0.00 0.00 35.34 3.68
5138 8212 7.439381 CCCACTGAAAAACAAGTAGACTAGTA 58.561 38.462 0.00 0.00 0.00 1.82
5157 8231 1.358759 GTGTTCGCAAACCCCACTG 59.641 57.895 0.00 0.00 34.28 3.66
5172 8246 9.436957 CATTGTAACAGATAGAAACTTAGGTGT 57.563 33.333 0.00 0.00 0.00 4.16
5184 8874 9.342308 ACATAATCCAACCATTGTAACAGATAG 57.658 33.333 0.00 0.00 0.00 2.08
5189 8879 7.450014 ACTGAACATAATCCAACCATTGTAACA 59.550 33.333 0.00 0.00 0.00 2.41
5196 8886 6.916360 ACAAACTGAACATAATCCAACCAT 57.084 33.333 0.00 0.00 0.00 3.55
5234 8924 8.745464 AGAGTTTTCGAGTGTATTTCTAACTC 57.255 34.615 0.00 0.00 39.28 3.01
5263 8955 2.125350 GCCCTTCTCGTCAGCCAG 60.125 66.667 0.00 0.00 0.00 4.85
5304 8996 7.094933 GGAAGTTGTATTCCGTTGTATCTGTTT 60.095 37.037 0.00 0.00 39.47 2.83
5305 8997 6.370718 GGAAGTTGTATTCCGTTGTATCTGTT 59.629 38.462 0.00 0.00 39.47 3.16
5397 9089 3.067106 CCGAACTTACTGAATGTGTGCT 58.933 45.455 0.00 0.00 0.00 4.40
5402 9094 3.836562 ACCTACCCGAACTTACTGAATGT 59.163 43.478 0.00 0.00 0.00 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.