Multiple sequence alignment - TraesCS5D01G057200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G057200 chr5D 100.000 3381 0 0 1 3381 53792987 53796367 0.000 6244.0
1 TraesCS5D01G057200 chr3D 98.309 2898 37 4 485 3381 84637874 84640760 0.000 5070.0
2 TraesCS5D01G057200 chr4D 98.275 2898 38 4 485 3381 114341522 114338636 0.000 5064.0
3 TraesCS5D01G057200 chr4D 89.153 2738 235 34 506 3221 215441358 215444055 0.000 3354.0
4 TraesCS5D01G057200 chr4D 98.501 467 2 4 1 464 391828687 391829151 0.000 819.0
5 TraesCS5D01G057200 chr7D 98.293 2285 38 1 485 2769 28002170 27999887 0.000 4002.0
6 TraesCS5D01G057200 chr7D 98.243 626 11 0 485 1110 27983613 27984238 0.000 1096.0
7 TraesCS5D01G057200 chr7D 97.453 589 11 1 2793 3381 27991133 27990549 0.000 1002.0
8 TraesCS5D01G057200 chr7D 98.712 466 4 2 1 464 401350314 401350779 0.000 826.0
9 TraesCS5D01G057200 chr3A 88.855 2943 264 38 465 3381 257008481 257011385 0.000 3559.0
10 TraesCS5D01G057200 chr3A 91.198 2613 197 20 468 3064 136137552 136134957 0.000 3520.0
11 TraesCS5D01G057200 chr3A 88.584 2952 260 38 468 3381 721790073 721787161 0.000 3513.0
12 TraesCS5D01G057200 chr7A 88.730 2937 270 35 468 3381 586362201 586359303 0.000 3533.0
13 TraesCS5D01G057200 chr7A 90.092 1948 163 16 1449 3381 30976047 30977979 0.000 2501.0
14 TraesCS5D01G057200 chrUn 88.562 2955 263 35 464 3381 185976216 185979132 0.000 3515.0
15 TraesCS5D01G057200 chr4B 88.329 2939 279 36 468 3381 556337027 556334128 0.000 3469.0
16 TraesCS5D01G057200 chr6D 98.428 1654 20 3 1729 3381 43081399 43079751 0.000 2905.0
17 TraesCS5D01G057200 chr6D 98.710 465 5 1 1 464 172894735 172894271 0.000 824.0
18 TraesCS5D01G057200 chr7B 89.342 1398 121 11 465 1858 113905701 113907074 0.000 1731.0
19 TraesCS5D01G057200 chr7B 91.003 678 54 7 489 1164 113910673 113910001 0.000 907.0
20 TraesCS5D01G057200 chr7B 100.000 28 0 0 468 495 113911003 113910976 0.006 52.8
21 TraesCS5D01G057200 chr5B 90.138 1085 88 7 2309 3381 188530080 188529003 0.000 1393.0
22 TraesCS5D01G057200 chr2D 98.927 466 2 3 1 464 539137585 539138049 0.000 830.0
23 TraesCS5D01G057200 chr2D 98.507 469 6 1 1 468 136896614 136897082 0.000 826.0
24 TraesCS5D01G057200 chr2D 98.511 470 4 3 1 468 515656116 515655648 0.000 826.0
25 TraesCS5D01G057200 chr1D 98.925 465 3 2 1 464 35026306 35026769 0.000 830.0
26 TraesCS5D01G057200 chr1D 98.715 467 5 1 1 466 35036579 35037045 0.000 828.0
27 TraesCS5D01G057200 chr1D 98.298 470 7 1 1 469 430842396 430841927 0.000 822.0
28 TraesCS5D01G057200 chr2A 89.366 536 38 12 470 989 392533330 392533862 0.000 656.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G057200 chr5D 53792987 53796367 3380 False 6244.0 6244 100.0000 1 3381 1 chr5D.!!$F1 3380
1 TraesCS5D01G057200 chr3D 84637874 84640760 2886 False 5070.0 5070 98.3090 485 3381 1 chr3D.!!$F1 2896
2 TraesCS5D01G057200 chr4D 114338636 114341522 2886 True 5064.0 5064 98.2750 485 3381 1 chr4D.!!$R1 2896
3 TraesCS5D01G057200 chr4D 215441358 215444055 2697 False 3354.0 3354 89.1530 506 3221 1 chr4D.!!$F1 2715
4 TraesCS5D01G057200 chr7D 27999887 28002170 2283 True 4002.0 4002 98.2930 485 2769 1 chr7D.!!$R2 2284
5 TraesCS5D01G057200 chr7D 27983613 27984238 625 False 1096.0 1096 98.2430 485 1110 1 chr7D.!!$F1 625
6 TraesCS5D01G057200 chr7D 27990549 27991133 584 True 1002.0 1002 97.4530 2793 3381 1 chr7D.!!$R1 588
7 TraesCS5D01G057200 chr3A 257008481 257011385 2904 False 3559.0 3559 88.8550 465 3381 1 chr3A.!!$F1 2916
8 TraesCS5D01G057200 chr3A 136134957 136137552 2595 True 3520.0 3520 91.1980 468 3064 1 chr3A.!!$R1 2596
9 TraesCS5D01G057200 chr3A 721787161 721790073 2912 True 3513.0 3513 88.5840 468 3381 1 chr3A.!!$R2 2913
10 TraesCS5D01G057200 chr7A 586359303 586362201 2898 True 3533.0 3533 88.7300 468 3381 1 chr7A.!!$R1 2913
11 TraesCS5D01G057200 chr7A 30976047 30977979 1932 False 2501.0 2501 90.0920 1449 3381 1 chr7A.!!$F1 1932
12 TraesCS5D01G057200 chrUn 185976216 185979132 2916 False 3515.0 3515 88.5620 464 3381 1 chrUn.!!$F1 2917
13 TraesCS5D01G057200 chr4B 556334128 556337027 2899 True 3469.0 3469 88.3290 468 3381 1 chr4B.!!$R1 2913
14 TraesCS5D01G057200 chr6D 43079751 43081399 1648 True 2905.0 2905 98.4280 1729 3381 1 chr6D.!!$R1 1652
15 TraesCS5D01G057200 chr7B 113905701 113907074 1373 False 1731.0 1731 89.3420 465 1858 1 chr7B.!!$F1 1393
16 TraesCS5D01G057200 chr7B 113910001 113911003 1002 True 479.9 907 95.5015 468 1164 2 chr7B.!!$R1 696
17 TraesCS5D01G057200 chr5B 188529003 188530080 1077 True 1393.0 1393 90.1380 2309 3381 1 chr5B.!!$R1 1072
18 TraesCS5D01G057200 chr2A 392533330 392533862 532 False 656.0 656 89.3660 470 989 1 chr2A.!!$F1 519

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
197 198 0.036010 CAGTAGTGGAGCCCAGTTGG 60.036 60.0 6.85 0.0 38.3 3.77 F
210 211 0.179045 CAGTTGGGACGATGGGGATC 60.179 60.0 0.00 0.0 0.0 3.36 F
404 405 0.179200 GCGACAAAACCACTATGCGG 60.179 55.0 0.00 0.0 0.0 5.69 F
448 449 0.388649 CACGTGGGAGATATAGCCGC 60.389 60.0 7.95 0.0 0.0 6.53 F
450 451 0.532573 CGTGGGAGATATAGCCGCAT 59.467 55.0 0.00 0.0 0.0 4.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1147 1503 2.107378 TGGGTGTGCATCTAGAAACCAA 59.893 45.455 0.0 0.00 0.00 3.67 R
2198 2572 1.267732 GCTCGAAAAGCCGACATCATG 60.268 52.381 0.0 0.00 45.92 3.07 R
2350 2724 3.266772 TGTCCCTAATCAGGAATGCTTGT 59.733 43.478 0.0 0.00 45.91 3.16 R
2379 2754 5.293079 GCGCAGGAATCTATATTTCCATCTC 59.707 44.000 0.3 1.43 44.25 2.75 R
2593 2972 4.949856 GTGATCCATTTGAACCTGGTGTAT 59.050 41.667 0.0 0.00 34.03 2.29 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 6.836577 AAGCTTAAATAGTCTTGATCTCGC 57.163 37.500 0.00 0.00 0.00 5.03
31 32 4.979197 AGCTTAAATAGTCTTGATCTCGCG 59.021 41.667 0.00 0.00 0.00 5.87
32 33 4.149046 GCTTAAATAGTCTTGATCTCGCGG 59.851 45.833 6.13 0.00 0.00 6.46
33 34 2.802787 AATAGTCTTGATCTCGCGGG 57.197 50.000 6.13 1.01 0.00 6.13
34 35 1.693627 ATAGTCTTGATCTCGCGGGT 58.306 50.000 5.57 0.00 0.00 5.28
35 36 0.738975 TAGTCTTGATCTCGCGGGTG 59.261 55.000 5.57 0.00 0.00 4.61
36 37 1.215647 GTCTTGATCTCGCGGGTGT 59.784 57.895 5.57 0.00 0.00 4.16
37 38 1.078759 GTCTTGATCTCGCGGGTGTG 61.079 60.000 5.57 0.00 0.00 3.82
38 39 1.215382 CTTGATCTCGCGGGTGTGA 59.785 57.895 5.57 0.00 0.00 3.58
44 45 2.434185 TCGCGGGTGTGAGATTGC 60.434 61.111 6.13 0.00 0.00 3.56
45 46 2.434884 CGCGGGTGTGAGATTGCT 60.435 61.111 0.00 0.00 0.00 3.91
46 47 2.743752 CGCGGGTGTGAGATTGCTG 61.744 63.158 0.00 0.00 0.00 4.41
47 48 1.375908 GCGGGTGTGAGATTGCTGA 60.376 57.895 0.00 0.00 0.00 4.26
48 49 1.364626 GCGGGTGTGAGATTGCTGAG 61.365 60.000 0.00 0.00 0.00 3.35
49 50 0.036952 CGGGTGTGAGATTGCTGAGT 60.037 55.000 0.00 0.00 0.00 3.41
50 51 1.731720 GGGTGTGAGATTGCTGAGTC 58.268 55.000 0.00 0.00 0.00 3.36
51 52 1.677217 GGGTGTGAGATTGCTGAGTCC 60.677 57.143 0.00 0.00 0.00 3.85
52 53 1.277557 GGTGTGAGATTGCTGAGTCCT 59.722 52.381 0.00 0.00 0.00 3.85
53 54 2.615869 GTGTGAGATTGCTGAGTCCTC 58.384 52.381 0.00 0.00 0.00 3.71
54 55 1.203287 TGTGAGATTGCTGAGTCCTCG 59.797 52.381 0.00 0.00 0.00 4.63
55 56 1.203523 GTGAGATTGCTGAGTCCTCGT 59.796 52.381 0.00 0.00 0.00 4.18
56 57 1.203287 TGAGATTGCTGAGTCCTCGTG 59.797 52.381 0.00 0.00 0.00 4.35
57 58 1.474478 GAGATTGCTGAGTCCTCGTGA 59.526 52.381 0.00 0.00 0.00 4.35
58 59 1.203523 AGATTGCTGAGTCCTCGTGAC 59.796 52.381 0.46 0.46 44.82 3.67
68 69 2.869897 GTCCTCGTGACTCACAGATTC 58.130 52.381 9.84 0.00 41.03 2.52
69 70 2.490115 GTCCTCGTGACTCACAGATTCT 59.510 50.000 9.84 0.00 41.03 2.40
70 71 3.690139 GTCCTCGTGACTCACAGATTCTA 59.310 47.826 9.84 0.00 41.03 2.10
71 72 3.690139 TCCTCGTGACTCACAGATTCTAC 59.310 47.826 9.84 0.00 33.40 2.59
72 73 3.181495 CCTCGTGACTCACAGATTCTACC 60.181 52.174 9.84 0.00 33.40 3.18
73 74 3.418047 TCGTGACTCACAGATTCTACCA 58.582 45.455 9.84 0.00 33.40 3.25
74 75 3.824443 TCGTGACTCACAGATTCTACCAA 59.176 43.478 9.84 0.00 33.40 3.67
75 76 4.279922 TCGTGACTCACAGATTCTACCAAA 59.720 41.667 9.84 0.00 33.40 3.28
76 77 4.988540 CGTGACTCACAGATTCTACCAAAA 59.011 41.667 9.84 0.00 33.40 2.44
77 78 5.107453 CGTGACTCACAGATTCTACCAAAAC 60.107 44.000 9.84 0.00 33.40 2.43
78 79 5.758296 GTGACTCACAGATTCTACCAAAACA 59.242 40.000 4.17 0.00 34.08 2.83
79 80 5.991606 TGACTCACAGATTCTACCAAAACAG 59.008 40.000 0.00 0.00 0.00 3.16
80 81 5.930135 ACTCACAGATTCTACCAAAACAGT 58.070 37.500 0.00 0.00 0.00 3.55
81 82 6.357367 ACTCACAGATTCTACCAAAACAGTT 58.643 36.000 0.00 0.00 0.00 3.16
82 83 6.260936 ACTCACAGATTCTACCAAAACAGTTG 59.739 38.462 0.00 0.00 0.00 3.16
83 84 5.008613 TCACAGATTCTACCAAAACAGTTGC 59.991 40.000 0.00 0.00 0.00 4.17
84 85 4.887071 ACAGATTCTACCAAAACAGTTGCA 59.113 37.500 0.00 0.00 0.00 4.08
85 86 5.009010 ACAGATTCTACCAAAACAGTTGCAG 59.991 40.000 0.00 0.00 0.00 4.41
86 87 4.520492 AGATTCTACCAAAACAGTTGCAGG 59.480 41.667 0.00 0.00 0.00 4.85
87 88 3.290948 TCTACCAAAACAGTTGCAGGT 57.709 42.857 8.97 8.97 0.00 4.00
88 89 2.948979 TCTACCAAAACAGTTGCAGGTG 59.051 45.455 12.57 0.00 0.00 4.00
89 90 0.175531 ACCAAAACAGTTGCAGGTGC 59.824 50.000 4.26 0.00 42.50 5.01
90 91 0.530431 CCAAAACAGTTGCAGGTGCC 60.530 55.000 0.00 0.00 41.18 5.01
91 92 0.871163 CAAAACAGTTGCAGGTGCCG 60.871 55.000 0.00 0.00 41.18 5.69
92 93 1.034838 AAAACAGTTGCAGGTGCCGA 61.035 50.000 0.00 0.00 41.18 5.54
93 94 1.724582 AAACAGTTGCAGGTGCCGAC 61.725 55.000 0.00 0.00 41.18 4.79
94 95 3.716006 CAGTTGCAGGTGCCGACG 61.716 66.667 0.00 0.00 41.18 5.12
95 96 3.923864 AGTTGCAGGTGCCGACGA 61.924 61.111 0.00 0.00 41.18 4.20
96 97 2.742372 GTTGCAGGTGCCGACGAT 60.742 61.111 0.00 0.00 41.18 3.73
97 98 2.741985 TTGCAGGTGCCGACGATG 60.742 61.111 0.00 0.00 41.18 3.84
100 101 4.758251 CAGGTGCCGACGATGCCA 62.758 66.667 0.00 0.00 0.00 4.92
101 102 4.457496 AGGTGCCGACGATGCCAG 62.457 66.667 0.00 0.00 0.00 4.85
102 103 4.760047 GGTGCCGACGATGCCAGT 62.760 66.667 0.00 0.00 0.00 4.00
103 104 3.490759 GTGCCGACGATGCCAGTG 61.491 66.667 0.00 0.00 0.00 3.66
113 114 4.649845 TGCCAGTGCAGATGATGG 57.350 55.556 0.35 0.00 44.23 3.51
114 115 1.077285 TGCCAGTGCAGATGATGGG 60.077 57.895 0.35 0.00 44.23 4.00
115 116 1.826921 GCCAGTGCAGATGATGGGG 60.827 63.158 0.35 0.00 37.47 4.96
116 117 1.611419 CCAGTGCAGATGATGGGGT 59.389 57.895 0.35 0.00 0.00 4.95
117 118 0.465097 CCAGTGCAGATGATGGGGTC 60.465 60.000 0.35 0.00 0.00 4.46
118 119 0.812811 CAGTGCAGATGATGGGGTCG 60.813 60.000 0.00 0.00 0.00 4.79
119 120 0.977627 AGTGCAGATGATGGGGTCGA 60.978 55.000 0.00 0.00 0.00 4.20
120 121 0.107456 GTGCAGATGATGGGGTCGAT 59.893 55.000 0.00 0.00 0.00 3.59
121 122 0.394192 TGCAGATGATGGGGTCGATC 59.606 55.000 0.00 0.00 0.00 3.69
122 123 0.683973 GCAGATGATGGGGTCGATCT 59.316 55.000 0.00 0.00 0.00 2.75
123 124 1.337635 GCAGATGATGGGGTCGATCTC 60.338 57.143 0.00 0.00 0.00 2.75
124 125 1.966354 CAGATGATGGGGTCGATCTCA 59.034 52.381 0.00 0.00 0.00 3.27
125 126 2.366590 CAGATGATGGGGTCGATCTCAA 59.633 50.000 0.28 0.00 0.00 3.02
126 127 2.632028 AGATGATGGGGTCGATCTCAAG 59.368 50.000 0.28 0.00 0.00 3.02
127 128 1.866015 TGATGGGGTCGATCTCAAGT 58.134 50.000 0.28 0.00 0.00 3.16
128 129 1.482182 TGATGGGGTCGATCTCAAGTG 59.518 52.381 0.28 0.00 0.00 3.16
129 130 0.833287 ATGGGGTCGATCTCAAGTGG 59.167 55.000 0.28 0.00 0.00 4.00
130 131 1.264749 TGGGGTCGATCTCAAGTGGG 61.265 60.000 0.00 0.00 0.00 4.61
131 132 0.976073 GGGGTCGATCTCAAGTGGGA 60.976 60.000 0.00 0.00 0.00 4.37
132 133 0.461961 GGGTCGATCTCAAGTGGGAG 59.538 60.000 0.00 0.00 36.21 4.30
133 134 1.187087 GGTCGATCTCAAGTGGGAGT 58.813 55.000 0.00 0.00 36.30 3.85
134 135 1.550976 GGTCGATCTCAAGTGGGAGTT 59.449 52.381 0.00 0.00 36.30 3.01
135 136 2.417515 GGTCGATCTCAAGTGGGAGTTC 60.418 54.545 0.00 0.00 36.30 3.01
136 137 1.914634 CGATCTCAAGTGGGAGTTCG 58.085 55.000 8.64 8.64 45.21 3.95
138 139 2.882324 GATCTCAAGTGGGAGTTCGAC 58.118 52.381 0.00 0.00 36.30 4.20
139 140 0.596577 TCTCAAGTGGGAGTTCGACG 59.403 55.000 0.00 0.00 36.30 5.12
140 141 0.596577 CTCAAGTGGGAGTTCGACGA 59.403 55.000 0.00 0.00 0.00 4.20
141 142 0.596577 TCAAGTGGGAGTTCGACGAG 59.403 55.000 0.00 0.00 0.00 4.18
142 143 0.388649 CAAGTGGGAGTTCGACGAGG 60.389 60.000 0.00 0.00 0.00 4.63
143 144 0.538977 AAGTGGGAGTTCGACGAGGA 60.539 55.000 0.00 0.00 0.00 3.71
144 145 0.538977 AGTGGGAGTTCGACGAGGAA 60.539 55.000 0.00 0.00 0.00 3.36
145 146 0.388263 GTGGGAGTTCGACGAGGAAC 60.388 60.000 13.06 13.06 45.19 3.62
165 166 3.482722 CGTGGTCGTTACTATGTGTCT 57.517 47.619 0.00 0.00 0.00 3.41
166 167 3.829948 CGTGGTCGTTACTATGTGTCTT 58.170 45.455 0.00 0.00 0.00 3.01
167 168 4.232221 CGTGGTCGTTACTATGTGTCTTT 58.768 43.478 0.00 0.00 0.00 2.52
168 169 4.682860 CGTGGTCGTTACTATGTGTCTTTT 59.317 41.667 0.00 0.00 0.00 2.27
169 170 5.164119 CGTGGTCGTTACTATGTGTCTTTTC 60.164 44.000 0.00 0.00 0.00 2.29
170 171 5.119743 GTGGTCGTTACTATGTGTCTTTTCC 59.880 44.000 0.00 0.00 0.00 3.13
171 172 5.011329 TGGTCGTTACTATGTGTCTTTTCCT 59.989 40.000 0.00 0.00 0.00 3.36
172 173 5.347907 GGTCGTTACTATGTGTCTTTTCCTG 59.652 44.000 0.00 0.00 0.00 3.86
173 174 6.154445 GTCGTTACTATGTGTCTTTTCCTGA 58.846 40.000 0.00 0.00 0.00 3.86
174 175 6.812160 GTCGTTACTATGTGTCTTTTCCTGAT 59.188 38.462 0.00 0.00 0.00 2.90
175 176 6.811665 TCGTTACTATGTGTCTTTTCCTGATG 59.188 38.462 0.00 0.00 0.00 3.07
176 177 6.811665 CGTTACTATGTGTCTTTTCCTGATGA 59.188 38.462 0.00 0.00 0.00 2.92
177 178 7.492669 CGTTACTATGTGTCTTTTCCTGATGAT 59.507 37.037 0.00 0.00 0.00 2.45
178 179 8.821894 GTTACTATGTGTCTTTTCCTGATGATC 58.178 37.037 0.00 0.00 0.00 2.92
179 180 6.950842 ACTATGTGTCTTTTCCTGATGATCA 58.049 36.000 0.00 0.00 0.00 2.92
180 181 7.046652 ACTATGTGTCTTTTCCTGATGATCAG 58.953 38.462 15.38 15.38 43.91 2.90
181 182 5.233083 TGTGTCTTTTCCTGATGATCAGT 57.767 39.130 20.06 0.00 42.80 3.41
182 183 6.358974 TGTGTCTTTTCCTGATGATCAGTA 57.641 37.500 20.06 2.34 42.80 2.74
183 184 6.401394 TGTGTCTTTTCCTGATGATCAGTAG 58.599 40.000 20.06 11.74 42.80 2.57
184 185 6.014242 TGTGTCTTTTCCTGATGATCAGTAGT 60.014 38.462 20.06 0.00 42.80 2.73
185 186 6.312426 GTGTCTTTTCCTGATGATCAGTAGTG 59.688 42.308 20.06 5.96 42.80 2.74
186 187 5.814705 GTCTTTTCCTGATGATCAGTAGTGG 59.185 44.000 20.06 6.52 42.80 4.00
187 188 5.721480 TCTTTTCCTGATGATCAGTAGTGGA 59.279 40.000 20.06 8.78 42.80 4.02
188 189 5.604758 TTTCCTGATGATCAGTAGTGGAG 57.395 43.478 20.06 4.25 42.80 3.86
189 190 2.961741 TCCTGATGATCAGTAGTGGAGC 59.038 50.000 20.06 0.00 42.80 4.70
190 191 2.036992 CCTGATGATCAGTAGTGGAGCC 59.963 54.545 20.06 0.00 42.80 4.70
191 192 2.036992 CTGATGATCAGTAGTGGAGCCC 59.963 54.545 14.17 0.00 39.58 5.19
192 193 2.042464 GATGATCAGTAGTGGAGCCCA 58.958 52.381 0.09 0.00 0.00 5.36
193 194 1.489481 TGATCAGTAGTGGAGCCCAG 58.511 55.000 0.00 0.00 32.34 4.45
194 195 1.273267 TGATCAGTAGTGGAGCCCAGT 60.273 52.381 6.76 6.76 40.67 4.00
195 196 1.834263 GATCAGTAGTGGAGCCCAGTT 59.166 52.381 6.85 0.00 38.30 3.16
196 197 0.976641 TCAGTAGTGGAGCCCAGTTG 59.023 55.000 6.85 1.82 38.30 3.16
197 198 0.036010 CAGTAGTGGAGCCCAGTTGG 60.036 60.000 6.85 0.00 38.30 3.77
207 208 2.272146 CCAGTTGGGACGATGGGG 59.728 66.667 0.00 0.00 40.01 4.96
208 209 2.297895 CCAGTTGGGACGATGGGGA 61.298 63.158 0.00 0.00 40.01 4.81
209 210 1.635817 CCAGTTGGGACGATGGGGAT 61.636 60.000 0.00 0.00 40.01 3.85
210 211 0.179045 CAGTTGGGACGATGGGGATC 60.179 60.000 0.00 0.00 0.00 3.36
211 212 0.326618 AGTTGGGACGATGGGGATCT 60.327 55.000 0.00 0.00 0.00 2.75
212 213 1.062428 AGTTGGGACGATGGGGATCTA 60.062 52.381 0.00 0.00 0.00 1.98
213 214 1.344763 GTTGGGACGATGGGGATCTAG 59.655 57.143 0.00 0.00 0.00 2.43
214 215 0.832135 TGGGACGATGGGGATCTAGC 60.832 60.000 0.00 0.00 0.00 3.42
215 216 0.832135 GGGACGATGGGGATCTAGCA 60.832 60.000 0.00 0.00 0.00 3.49
216 217 1.270907 GGACGATGGGGATCTAGCAT 58.729 55.000 0.00 0.00 0.00 3.79
217 218 1.625818 GGACGATGGGGATCTAGCATT 59.374 52.381 0.00 0.00 0.00 3.56
218 219 2.039084 GGACGATGGGGATCTAGCATTT 59.961 50.000 0.00 0.00 0.00 2.32
219 220 3.070018 GACGATGGGGATCTAGCATTTG 58.930 50.000 0.00 0.00 0.00 2.32
220 221 2.224621 ACGATGGGGATCTAGCATTTGG 60.225 50.000 0.00 0.00 0.00 3.28
221 222 2.800250 GATGGGGATCTAGCATTTGGG 58.200 52.381 0.00 0.00 0.00 4.12
222 223 0.852842 TGGGGATCTAGCATTTGGGG 59.147 55.000 0.00 0.00 0.00 4.96
223 224 0.853530 GGGGATCTAGCATTTGGGGT 59.146 55.000 0.00 0.00 0.00 4.95
224 225 1.217942 GGGGATCTAGCATTTGGGGTT 59.782 52.381 0.00 0.00 0.00 4.11
225 226 2.310538 GGGATCTAGCATTTGGGGTTG 58.689 52.381 0.00 0.00 0.00 3.77
226 227 2.358195 GGGATCTAGCATTTGGGGTTGT 60.358 50.000 0.00 0.00 0.00 3.32
227 228 2.952310 GGATCTAGCATTTGGGGTTGTC 59.048 50.000 0.00 0.00 0.00 3.18
228 229 3.372025 GGATCTAGCATTTGGGGTTGTCT 60.372 47.826 0.00 0.00 0.00 3.41
229 230 3.806949 TCTAGCATTTGGGGTTGTCTT 57.193 42.857 0.00 0.00 0.00 3.01
230 231 4.919774 TCTAGCATTTGGGGTTGTCTTA 57.080 40.909 0.00 0.00 0.00 2.10
231 232 4.843728 TCTAGCATTTGGGGTTGTCTTAG 58.156 43.478 0.00 0.00 0.00 2.18
232 233 3.525800 AGCATTTGGGGTTGTCTTAGT 57.474 42.857 0.00 0.00 0.00 2.24
233 234 3.844640 AGCATTTGGGGTTGTCTTAGTT 58.155 40.909 0.00 0.00 0.00 2.24
234 235 4.223144 AGCATTTGGGGTTGTCTTAGTTT 58.777 39.130 0.00 0.00 0.00 2.66
235 236 4.280929 AGCATTTGGGGTTGTCTTAGTTTC 59.719 41.667 0.00 0.00 0.00 2.78
236 237 4.038642 GCATTTGGGGTTGTCTTAGTTTCA 59.961 41.667 0.00 0.00 0.00 2.69
237 238 5.279456 GCATTTGGGGTTGTCTTAGTTTCAT 60.279 40.000 0.00 0.00 0.00 2.57
238 239 6.389906 CATTTGGGGTTGTCTTAGTTTCATC 58.610 40.000 0.00 0.00 0.00 2.92
239 240 4.993705 TGGGGTTGTCTTAGTTTCATCT 57.006 40.909 0.00 0.00 0.00 2.90
240 241 4.651778 TGGGGTTGTCTTAGTTTCATCTG 58.348 43.478 0.00 0.00 0.00 2.90
241 242 4.010349 GGGGTTGTCTTAGTTTCATCTGG 58.990 47.826 0.00 0.00 0.00 3.86
242 243 4.263331 GGGGTTGTCTTAGTTTCATCTGGA 60.263 45.833 0.00 0.00 0.00 3.86
243 244 5.501156 GGGTTGTCTTAGTTTCATCTGGAT 58.499 41.667 0.00 0.00 0.00 3.41
244 245 5.586643 GGGTTGTCTTAGTTTCATCTGGATC 59.413 44.000 0.00 0.00 0.00 3.36
245 246 6.410540 GGTTGTCTTAGTTTCATCTGGATCT 58.589 40.000 0.00 0.00 0.00 2.75
246 247 6.881602 GGTTGTCTTAGTTTCATCTGGATCTT 59.118 38.462 0.00 0.00 0.00 2.40
247 248 7.148340 GGTTGTCTTAGTTTCATCTGGATCTTG 60.148 40.741 0.00 0.00 0.00 3.02
248 249 7.244886 TGTCTTAGTTTCATCTGGATCTTGA 57.755 36.000 0.00 0.00 0.00 3.02
249 250 7.099764 TGTCTTAGTTTCATCTGGATCTTGAC 58.900 38.462 0.00 0.00 0.00 3.18
250 251 6.536941 GTCTTAGTTTCATCTGGATCTTGACC 59.463 42.308 0.00 0.00 0.00 4.02
251 252 3.866651 AGTTTCATCTGGATCTTGACCG 58.133 45.455 0.00 0.00 0.00 4.79
252 253 3.261897 AGTTTCATCTGGATCTTGACCGT 59.738 43.478 0.00 0.00 0.00 4.83
253 254 4.466370 AGTTTCATCTGGATCTTGACCGTA 59.534 41.667 0.00 0.00 0.00 4.02
254 255 4.655762 TTCATCTGGATCTTGACCGTAG 57.344 45.455 0.00 0.00 0.00 3.51
255 256 2.362397 TCATCTGGATCTTGACCGTAGC 59.638 50.000 0.00 0.00 0.00 3.58
256 257 1.112113 TCTGGATCTTGACCGTAGCC 58.888 55.000 0.00 0.00 0.00 3.93
257 258 0.249073 CTGGATCTTGACCGTAGCCG 60.249 60.000 0.00 0.00 0.00 5.52
271 272 3.973657 CGTAGCCGGTCTATATGTTTGT 58.026 45.455 1.90 0.00 0.00 2.83
272 273 5.112220 CGTAGCCGGTCTATATGTTTGTA 57.888 43.478 1.90 0.00 0.00 2.41
273 274 5.706916 CGTAGCCGGTCTATATGTTTGTAT 58.293 41.667 1.90 0.00 0.00 2.29
274 275 6.154445 CGTAGCCGGTCTATATGTTTGTATT 58.846 40.000 1.90 0.00 0.00 1.89
275 276 6.643770 CGTAGCCGGTCTATATGTTTGTATTT 59.356 38.462 1.90 0.00 0.00 1.40
276 277 7.170320 CGTAGCCGGTCTATATGTTTGTATTTT 59.830 37.037 1.90 0.00 0.00 1.82
277 278 7.259290 AGCCGGTCTATATGTTTGTATTTTG 57.741 36.000 1.90 0.00 0.00 2.44
278 279 6.262273 AGCCGGTCTATATGTTTGTATTTTGG 59.738 38.462 1.90 0.00 0.00 3.28
279 280 6.261381 GCCGGTCTATATGTTTGTATTTTGGA 59.739 38.462 1.90 0.00 0.00 3.53
280 281 7.040686 GCCGGTCTATATGTTTGTATTTTGGAT 60.041 37.037 1.90 0.00 0.00 3.41
281 282 8.289618 CCGGTCTATATGTTTGTATTTTGGATG 58.710 37.037 0.00 0.00 0.00 3.51
282 283 9.051679 CGGTCTATATGTTTGTATTTTGGATGA 57.948 33.333 0.00 0.00 0.00 2.92
291 292 9.460019 TGTTTGTATTTTGGATGATGTATGAGA 57.540 29.630 0.00 0.00 0.00 3.27
318 319 4.937696 TTATGTATTGTGTGAAGTGGCG 57.062 40.909 0.00 0.00 0.00 5.69
319 320 2.535012 TGTATTGTGTGAAGTGGCGA 57.465 45.000 0.00 0.00 0.00 5.54
320 321 3.052455 TGTATTGTGTGAAGTGGCGAT 57.948 42.857 0.00 0.00 0.00 4.58
321 322 3.407698 TGTATTGTGTGAAGTGGCGATT 58.592 40.909 0.00 0.00 0.00 3.34
322 323 2.995466 ATTGTGTGAAGTGGCGATTG 57.005 45.000 0.00 0.00 0.00 2.67
323 324 1.674359 TTGTGTGAAGTGGCGATTGT 58.326 45.000 0.00 0.00 0.00 2.71
324 325 2.535012 TGTGTGAAGTGGCGATTGTA 57.465 45.000 0.00 0.00 0.00 2.41
325 326 2.839975 TGTGTGAAGTGGCGATTGTAA 58.160 42.857 0.00 0.00 0.00 2.41
326 327 2.805671 TGTGTGAAGTGGCGATTGTAAG 59.194 45.455 0.00 0.00 0.00 2.34
327 328 1.804151 TGTGAAGTGGCGATTGTAAGC 59.196 47.619 0.00 0.00 0.00 3.09
336 337 3.831715 GCGATTGTAAGCCAACTCTTT 57.168 42.857 0.00 0.00 35.44 2.52
337 338 4.939509 GCGATTGTAAGCCAACTCTTTA 57.060 40.909 0.00 0.00 35.44 1.85
338 339 5.485662 GCGATTGTAAGCCAACTCTTTAT 57.514 39.130 0.00 0.00 35.44 1.40
339 340 5.502606 GCGATTGTAAGCCAACTCTTTATC 58.497 41.667 0.00 0.00 35.44 1.75
340 341 5.504173 GCGATTGTAAGCCAACTCTTTATCC 60.504 44.000 0.00 0.00 35.44 2.59
341 342 5.007724 CGATTGTAAGCCAACTCTTTATCCC 59.992 44.000 0.00 0.00 35.44 3.85
342 343 4.919774 TGTAAGCCAACTCTTTATCCCA 57.080 40.909 0.00 0.00 0.00 4.37
343 344 5.450818 TGTAAGCCAACTCTTTATCCCAT 57.549 39.130 0.00 0.00 0.00 4.00
344 345 5.826643 TGTAAGCCAACTCTTTATCCCATT 58.173 37.500 0.00 0.00 0.00 3.16
345 346 5.885912 TGTAAGCCAACTCTTTATCCCATTC 59.114 40.000 0.00 0.00 0.00 2.67
346 347 4.870021 AGCCAACTCTTTATCCCATTCT 57.130 40.909 0.00 0.00 0.00 2.40
347 348 5.198602 AGCCAACTCTTTATCCCATTCTT 57.801 39.130 0.00 0.00 0.00 2.52
348 349 4.952335 AGCCAACTCTTTATCCCATTCTTG 59.048 41.667 0.00 0.00 0.00 3.02
349 350 4.706962 GCCAACTCTTTATCCCATTCTTGT 59.293 41.667 0.00 0.00 0.00 3.16
350 351 5.185828 GCCAACTCTTTATCCCATTCTTGTT 59.814 40.000 0.00 0.00 0.00 2.83
351 352 6.625960 GCCAACTCTTTATCCCATTCTTGTTC 60.626 42.308 0.00 0.00 0.00 3.18
352 353 6.434028 CCAACTCTTTATCCCATTCTTGTTCA 59.566 38.462 0.00 0.00 0.00 3.18
353 354 7.123247 CCAACTCTTTATCCCATTCTTGTTCAT 59.877 37.037 0.00 0.00 0.00 2.57
354 355 8.526147 CAACTCTTTATCCCATTCTTGTTCATT 58.474 33.333 0.00 0.00 0.00 2.57
355 356 9.753674 AACTCTTTATCCCATTCTTGTTCATTA 57.246 29.630 0.00 0.00 0.00 1.90
356 357 9.178758 ACTCTTTATCCCATTCTTGTTCATTAC 57.821 33.333 0.00 0.00 0.00 1.89
357 358 9.177608 CTCTTTATCCCATTCTTGTTCATTACA 57.822 33.333 0.00 0.00 34.12 2.41
358 359 9.699410 TCTTTATCCCATTCTTGTTCATTACAT 57.301 29.630 0.00 0.00 36.44 2.29
359 360 9.740239 CTTTATCCCATTCTTGTTCATTACATG 57.260 33.333 0.00 0.00 36.44 3.21
360 361 6.720112 ATCCCATTCTTGTTCATTACATGG 57.280 37.500 0.00 0.00 36.44 3.66
361 362 5.266733 CCCATTCTTGTTCATTACATGGG 57.733 43.478 0.00 0.00 43.44 4.00
363 364 6.720112 CCATTCTTGTTCATTACATGGGAT 57.280 37.500 0.00 0.00 36.44 3.85
364 365 7.116075 CCATTCTTGTTCATTACATGGGATT 57.884 36.000 0.00 0.00 36.44 3.01
365 366 6.982141 CCATTCTTGTTCATTACATGGGATTG 59.018 38.462 0.00 0.00 36.44 2.67
366 367 7.364056 CCATTCTTGTTCATTACATGGGATTGT 60.364 37.037 0.00 0.00 36.44 2.71
367 368 6.513806 TCTTGTTCATTACATGGGATTGTG 57.486 37.500 0.00 0.00 36.44 3.33
368 369 6.009589 TCTTGTTCATTACATGGGATTGTGT 58.990 36.000 0.00 0.00 36.44 3.72
369 370 5.641783 TGTTCATTACATGGGATTGTGTG 57.358 39.130 0.00 0.00 0.00 3.82
370 371 5.320277 TGTTCATTACATGGGATTGTGTGA 58.680 37.500 0.00 0.00 0.00 3.58
371 372 5.772169 TGTTCATTACATGGGATTGTGTGAA 59.228 36.000 0.00 0.00 35.28 3.18
372 373 6.072008 TGTTCATTACATGGGATTGTGTGAAG 60.072 38.462 0.00 0.00 36.80 3.02
373 374 5.814481 TCATTACATGGGATTGTGTGAAGA 58.186 37.500 0.00 0.00 0.00 2.87
374 375 6.425735 TCATTACATGGGATTGTGTGAAGAT 58.574 36.000 0.00 0.00 0.00 2.40
375 376 6.319405 TCATTACATGGGATTGTGTGAAGATG 59.681 38.462 0.00 0.00 0.00 2.90
376 377 4.305539 ACATGGGATTGTGTGAAGATGA 57.694 40.909 0.00 0.00 0.00 2.92
377 378 4.012374 ACATGGGATTGTGTGAAGATGAC 58.988 43.478 0.00 0.00 0.00 3.06
378 379 3.071874 TGGGATTGTGTGAAGATGACC 57.928 47.619 0.00 0.00 0.00 4.02
379 380 2.290896 TGGGATTGTGTGAAGATGACCC 60.291 50.000 0.00 0.00 35.82 4.46
380 381 2.025887 GGGATTGTGTGAAGATGACCCT 60.026 50.000 0.00 0.00 32.93 4.34
381 382 3.562176 GGGATTGTGTGAAGATGACCCTT 60.562 47.826 0.00 0.00 32.93 3.95
382 383 3.691609 GGATTGTGTGAAGATGACCCTTC 59.308 47.826 0.00 0.00 42.09 3.46
383 384 4.566488 GGATTGTGTGAAGATGACCCTTCT 60.566 45.833 0.00 0.00 42.20 2.85
384 385 4.437682 TTGTGTGAAGATGACCCTTCTT 57.562 40.909 0.00 0.00 42.20 2.52
385 386 3.743521 TGTGTGAAGATGACCCTTCTTG 58.256 45.455 0.00 0.00 42.20 3.02
386 387 2.485814 GTGTGAAGATGACCCTTCTTGC 59.514 50.000 0.00 0.00 42.20 4.01
387 388 1.734465 GTGAAGATGACCCTTCTTGCG 59.266 52.381 0.00 0.00 42.20 4.85
388 389 1.623311 TGAAGATGACCCTTCTTGCGA 59.377 47.619 0.00 0.00 42.20 5.10
389 390 2.003301 GAAGATGACCCTTCTTGCGAC 58.997 52.381 0.00 0.00 39.44 5.19
390 391 0.976641 AGATGACCCTTCTTGCGACA 59.023 50.000 0.00 0.00 0.00 4.35
391 392 1.347707 AGATGACCCTTCTTGCGACAA 59.652 47.619 0.00 0.00 0.00 3.18
392 393 2.151202 GATGACCCTTCTTGCGACAAA 58.849 47.619 0.00 0.00 0.00 2.83
393 394 2.045561 TGACCCTTCTTGCGACAAAA 57.954 45.000 0.00 0.00 0.00 2.44
394 395 1.673920 TGACCCTTCTTGCGACAAAAC 59.326 47.619 0.00 0.00 0.00 2.43
395 396 1.001706 GACCCTTCTTGCGACAAAACC 60.002 52.381 0.00 0.00 0.00 3.27
396 397 1.028905 CCCTTCTTGCGACAAAACCA 58.971 50.000 0.00 0.00 0.00 3.67
397 398 1.269051 CCCTTCTTGCGACAAAACCAC 60.269 52.381 0.00 0.00 0.00 4.16
398 399 1.676006 CCTTCTTGCGACAAAACCACT 59.324 47.619 0.00 0.00 0.00 4.00
399 400 2.875933 CCTTCTTGCGACAAAACCACTA 59.124 45.455 0.00 0.00 0.00 2.74
400 401 3.502211 CCTTCTTGCGACAAAACCACTAT 59.498 43.478 0.00 0.00 0.00 2.12
401 402 4.466828 CTTCTTGCGACAAAACCACTATG 58.533 43.478 0.00 0.00 0.00 2.23
402 403 2.225491 TCTTGCGACAAAACCACTATGC 59.775 45.455 0.00 0.00 0.00 3.14
403 404 0.515127 TGCGACAAAACCACTATGCG 59.485 50.000 0.00 0.00 0.00 4.73
404 405 0.179200 GCGACAAAACCACTATGCGG 60.179 55.000 0.00 0.00 0.00 5.69
405 406 1.153353 CGACAAAACCACTATGCGGT 58.847 50.000 0.00 0.00 38.85 5.68
407 408 2.737783 CGACAAAACCACTATGCGGTTA 59.262 45.455 0.00 0.00 46.12 2.85
408 409 3.372822 CGACAAAACCACTATGCGGTTAT 59.627 43.478 0.00 0.00 46.12 1.89
409 410 4.658071 GACAAAACCACTATGCGGTTATG 58.342 43.478 0.00 0.00 46.12 1.90
410 411 3.119637 ACAAAACCACTATGCGGTTATGC 60.120 43.478 0.00 0.00 46.12 3.14
411 412 1.675552 AACCACTATGCGGTTATGCC 58.324 50.000 0.00 0.00 45.00 4.40
412 413 0.837272 ACCACTATGCGGTTATGCCT 59.163 50.000 0.00 0.00 30.53 4.75
413 414 1.202651 ACCACTATGCGGTTATGCCTC 60.203 52.381 0.00 0.00 30.53 4.70
414 415 1.070758 CCACTATGCGGTTATGCCTCT 59.929 52.381 0.00 0.00 34.25 3.69
415 416 2.299013 CCACTATGCGGTTATGCCTCTA 59.701 50.000 0.00 0.00 34.25 2.43
416 417 3.244078 CCACTATGCGGTTATGCCTCTAA 60.244 47.826 0.00 0.00 34.25 2.10
417 418 3.990469 CACTATGCGGTTATGCCTCTAAG 59.010 47.826 0.00 0.00 34.25 2.18
418 419 3.641906 ACTATGCGGTTATGCCTCTAAGT 59.358 43.478 0.00 0.00 34.25 2.24
419 420 2.596904 TGCGGTTATGCCTCTAAGTC 57.403 50.000 0.00 0.00 34.25 3.01
420 421 1.202371 TGCGGTTATGCCTCTAAGTCG 60.202 52.381 0.00 0.00 34.25 4.18
421 422 1.202382 GCGGTTATGCCTCTAAGTCGT 60.202 52.381 0.00 0.00 34.25 4.34
422 423 2.460918 CGGTTATGCCTCTAAGTCGTG 58.539 52.381 0.00 0.00 34.25 4.35
423 424 2.202566 GGTTATGCCTCTAAGTCGTGC 58.797 52.381 0.00 0.00 0.00 5.34
424 425 2.202566 GTTATGCCTCTAAGTCGTGCC 58.797 52.381 0.00 0.00 0.00 5.01
425 426 1.776662 TATGCCTCTAAGTCGTGCCT 58.223 50.000 0.00 0.00 0.00 4.75
426 427 0.461961 ATGCCTCTAAGTCGTGCCTC 59.538 55.000 0.00 0.00 0.00 4.70
427 428 1.226717 GCCTCTAAGTCGTGCCTCG 60.227 63.158 0.00 0.00 41.41 4.63
428 429 1.654954 GCCTCTAAGTCGTGCCTCGA 61.655 60.000 0.00 0.00 46.83 4.04
437 438 3.986006 GTGCCTCGACACGTGGGA 61.986 66.667 21.57 15.34 40.31 4.37
438 439 3.680786 TGCCTCGACACGTGGGAG 61.681 66.667 24.04 24.04 40.31 4.30
439 440 3.371063 GCCTCGACACGTGGGAGA 61.371 66.667 29.41 19.95 40.31 3.71
440 441 2.711922 GCCTCGACACGTGGGAGAT 61.712 63.158 29.41 7.79 40.31 2.75
441 442 1.381928 GCCTCGACACGTGGGAGATA 61.382 60.000 29.41 7.54 40.31 1.98
442 443 1.319541 CCTCGACACGTGGGAGATAT 58.680 55.000 29.41 6.39 36.95 1.63
443 444 2.501261 CCTCGACACGTGGGAGATATA 58.499 52.381 29.41 5.30 36.95 0.86
444 445 2.484651 CCTCGACACGTGGGAGATATAG 59.515 54.545 29.41 15.13 36.95 1.31
445 446 1.878088 TCGACACGTGGGAGATATAGC 59.122 52.381 21.57 0.00 0.00 2.97
446 447 1.068472 CGACACGTGGGAGATATAGCC 60.068 57.143 21.57 0.00 0.00 3.93
447 448 0.959553 ACACGTGGGAGATATAGCCG 59.040 55.000 21.57 0.00 0.00 5.52
448 449 0.388649 CACGTGGGAGATATAGCCGC 60.389 60.000 7.95 0.00 0.00 6.53
449 450 0.826256 ACGTGGGAGATATAGCCGCA 60.826 55.000 0.00 0.00 0.00 5.69
450 451 0.532573 CGTGGGAGATATAGCCGCAT 59.467 55.000 0.00 0.00 0.00 4.73
451 452 1.469940 CGTGGGAGATATAGCCGCATC 60.470 57.143 0.00 0.00 0.00 3.91
452 453 0.817654 TGGGAGATATAGCCGCATCG 59.182 55.000 0.00 0.00 0.00 3.84
453 454 0.818296 GGGAGATATAGCCGCATCGT 59.182 55.000 0.00 0.00 0.00 3.73
454 455 1.469940 GGGAGATATAGCCGCATCGTG 60.470 57.143 0.00 0.00 0.00 4.35
455 456 1.469940 GGAGATATAGCCGCATCGTGG 60.470 57.143 0.00 0.00 36.10 4.94
456 457 0.532573 AGATATAGCCGCATCGTGGG 59.467 55.000 0.00 0.00 33.18 4.61
466 467 1.570347 GCATCGTGGGCGTTACACAA 61.570 55.000 6.97 0.00 38.74 3.33
782 1119 3.950794 CTACATGCGCACACCCGGT 62.951 63.158 14.90 7.07 0.00 5.28
953 1306 1.414550 TGTGGTCGTTTGTCTCCATCA 59.585 47.619 0.00 0.00 32.45 3.07
956 1309 2.069273 GGTCGTTTGTCTCCATCACAG 58.931 52.381 0.00 0.00 0.00 3.66
957 1310 1.461127 GTCGTTTGTCTCCATCACAGC 59.539 52.381 0.00 0.00 0.00 4.40
958 1311 1.344438 TCGTTTGTCTCCATCACAGCT 59.656 47.619 0.00 0.00 0.00 4.24
959 1312 2.560981 TCGTTTGTCTCCATCACAGCTA 59.439 45.455 0.00 0.00 0.00 3.32
960 1313 3.195610 TCGTTTGTCTCCATCACAGCTAT 59.804 43.478 0.00 0.00 0.00 2.97
961 1314 4.401202 TCGTTTGTCTCCATCACAGCTATA 59.599 41.667 0.00 0.00 0.00 1.31
1147 1503 4.807304 CACTTCCCGTAAAATATGTAGCGT 59.193 41.667 0.00 0.00 0.00 5.07
1219 1576 7.825627 TTTAACGATGAAAAGAAACGCTTAC 57.174 32.000 0.00 0.00 35.24 2.34
1220 1577 4.400036 ACGATGAAAAGAAACGCTTACC 57.600 40.909 0.00 0.00 35.24 2.85
2198 2572 4.457603 TGTTACAACAGACATACAATGGGC 59.542 41.667 0.00 0.00 34.30 5.36
2324 2698 4.397420 ACTGTCTGCAATCCAACATGTTA 58.603 39.130 11.53 0.00 0.00 2.41
2379 2754 6.567050 CATTCCTGATTAGGGACAATTTGTG 58.433 40.000 6.80 0.00 44.70 3.33
2593 2972 4.040095 TGCCAAAACATCAACATCAATGGA 59.960 37.500 0.00 0.00 0.00 3.41
2887 3273 1.857217 GTCACGTGAGATAGCAGCATG 59.143 52.381 20.73 0.00 40.87 4.06
3097 3483 2.631160 ACATTCTTGTCCGGAACACA 57.369 45.000 5.23 0.00 37.70 3.72
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 9.627395 GCGAGATCAAGACTATTTAAGCTTATA 57.373 33.333 7.08 2.66 0.00 0.98
5 6 7.327275 CGCGAGATCAAGACTATTTAAGCTTAT 59.673 37.037 7.08 0.00 0.00 1.73
6 7 6.637254 CGCGAGATCAAGACTATTTAAGCTTA 59.363 38.462 0.00 0.86 0.00 3.09
7 8 5.460419 CGCGAGATCAAGACTATTTAAGCTT 59.540 40.000 0.00 3.48 0.00 3.74
8 9 4.979197 CGCGAGATCAAGACTATTTAAGCT 59.021 41.667 0.00 0.00 0.00 3.74
9 10 4.149046 CCGCGAGATCAAGACTATTTAAGC 59.851 45.833 8.23 0.00 0.00 3.09
10 11 4.681942 CCCGCGAGATCAAGACTATTTAAG 59.318 45.833 8.23 0.00 0.00 1.85
11 12 4.098960 ACCCGCGAGATCAAGACTATTTAA 59.901 41.667 8.23 0.00 0.00 1.52
12 13 3.635373 ACCCGCGAGATCAAGACTATTTA 59.365 43.478 8.23 0.00 0.00 1.40
13 14 2.431057 ACCCGCGAGATCAAGACTATTT 59.569 45.455 8.23 0.00 0.00 1.40
14 15 2.032620 ACCCGCGAGATCAAGACTATT 58.967 47.619 8.23 0.00 0.00 1.73
15 16 1.338337 CACCCGCGAGATCAAGACTAT 59.662 52.381 8.23 0.00 0.00 2.12
16 17 0.738975 CACCCGCGAGATCAAGACTA 59.261 55.000 8.23 0.00 0.00 2.59
17 18 1.251527 ACACCCGCGAGATCAAGACT 61.252 55.000 8.23 0.00 0.00 3.24
18 19 1.078759 CACACCCGCGAGATCAAGAC 61.079 60.000 8.23 0.00 0.00 3.01
19 20 1.215382 CACACCCGCGAGATCAAGA 59.785 57.895 8.23 0.00 0.00 3.02
20 21 0.803768 CTCACACCCGCGAGATCAAG 60.804 60.000 8.23 0.00 0.00 3.02
21 22 1.215382 CTCACACCCGCGAGATCAA 59.785 57.895 8.23 0.00 0.00 2.57
22 23 1.037579 ATCTCACACCCGCGAGATCA 61.038 55.000 8.23 0.00 43.90 2.92
23 24 0.103208 AATCTCACACCCGCGAGATC 59.897 55.000 8.23 0.00 45.97 2.75
24 25 3.941081 ATCTCACACCCGCGAGAT 58.059 55.556 8.23 3.34 42.77 2.75
25 26 1.215382 CAATCTCACACCCGCGAGA 59.785 57.895 8.23 0.29 42.25 4.04
26 27 2.456119 GCAATCTCACACCCGCGAG 61.456 63.158 8.23 0.00 0.00 5.03
27 28 2.434185 GCAATCTCACACCCGCGA 60.434 61.111 8.23 0.00 0.00 5.87
28 29 2.434884 AGCAATCTCACACCCGCG 60.435 61.111 0.00 0.00 0.00 6.46
29 30 1.364626 CTCAGCAATCTCACACCCGC 61.365 60.000 0.00 0.00 0.00 6.13
30 31 0.036952 ACTCAGCAATCTCACACCCG 60.037 55.000 0.00 0.00 0.00 5.28
31 32 1.677217 GGACTCAGCAATCTCACACCC 60.677 57.143 0.00 0.00 0.00 4.61
32 33 1.277557 AGGACTCAGCAATCTCACACC 59.722 52.381 0.00 0.00 0.00 4.16
33 34 2.615869 GAGGACTCAGCAATCTCACAC 58.384 52.381 0.00 0.00 0.00 3.82
34 35 1.203287 CGAGGACTCAGCAATCTCACA 59.797 52.381 0.00 0.00 0.00 3.58
35 36 1.203523 ACGAGGACTCAGCAATCTCAC 59.796 52.381 0.00 0.00 0.00 3.51
36 37 1.203287 CACGAGGACTCAGCAATCTCA 59.797 52.381 0.00 0.00 0.00 3.27
37 38 1.474478 TCACGAGGACTCAGCAATCTC 59.526 52.381 0.00 0.00 0.00 2.75
38 39 1.203523 GTCACGAGGACTCAGCAATCT 59.796 52.381 0.00 0.00 43.46 2.40
39 40 1.634702 GTCACGAGGACTCAGCAATC 58.365 55.000 0.00 0.00 43.46 2.67
40 41 3.822607 GTCACGAGGACTCAGCAAT 57.177 52.632 0.00 0.00 43.46 3.56
49 50 2.796557 AGAATCTGTGAGTCACGAGGA 58.203 47.619 18.17 15.34 37.14 3.71
50 51 3.181495 GGTAGAATCTGTGAGTCACGAGG 60.181 52.174 18.17 10.84 37.14 4.63
51 52 3.440522 TGGTAGAATCTGTGAGTCACGAG 59.559 47.826 18.17 15.45 37.14 4.18
52 53 3.418047 TGGTAGAATCTGTGAGTCACGA 58.582 45.455 18.17 17.17 37.14 4.35
53 54 3.850122 TGGTAGAATCTGTGAGTCACG 57.150 47.619 18.17 12.74 37.14 4.35
54 55 5.758296 TGTTTTGGTAGAATCTGTGAGTCAC 59.242 40.000 16.68 16.68 34.56 3.67
55 56 5.924356 TGTTTTGGTAGAATCTGTGAGTCA 58.076 37.500 0.00 0.00 0.00 3.41
56 57 5.992217 ACTGTTTTGGTAGAATCTGTGAGTC 59.008 40.000 0.00 0.00 0.00 3.36
57 58 5.930135 ACTGTTTTGGTAGAATCTGTGAGT 58.070 37.500 0.00 0.00 0.00 3.41
58 59 6.662616 CAACTGTTTTGGTAGAATCTGTGAG 58.337 40.000 0.00 0.00 0.00 3.51
59 60 5.008613 GCAACTGTTTTGGTAGAATCTGTGA 59.991 40.000 0.00 0.00 0.00 3.58
60 61 5.215160 GCAACTGTTTTGGTAGAATCTGTG 58.785 41.667 0.00 0.00 0.00 3.66
61 62 4.887071 TGCAACTGTTTTGGTAGAATCTGT 59.113 37.500 0.00 0.00 0.00 3.41
62 63 5.437289 TGCAACTGTTTTGGTAGAATCTG 57.563 39.130 0.00 0.00 0.00 2.90
63 64 4.520492 CCTGCAACTGTTTTGGTAGAATCT 59.480 41.667 0.00 0.00 0.00 2.40
64 65 4.278419 ACCTGCAACTGTTTTGGTAGAATC 59.722 41.667 6.97 0.00 0.00 2.52
65 66 4.037923 CACCTGCAACTGTTTTGGTAGAAT 59.962 41.667 8.05 0.00 0.00 2.40
66 67 3.380004 CACCTGCAACTGTTTTGGTAGAA 59.620 43.478 8.05 0.00 0.00 2.10
67 68 2.948979 CACCTGCAACTGTTTTGGTAGA 59.051 45.455 8.05 0.00 0.00 2.59
68 69 2.543653 GCACCTGCAACTGTTTTGGTAG 60.544 50.000 8.05 0.00 41.59 3.18
69 70 1.407258 GCACCTGCAACTGTTTTGGTA 59.593 47.619 8.05 0.00 41.59 3.25
70 71 0.175531 GCACCTGCAACTGTTTTGGT 59.824 50.000 0.00 0.00 41.59 3.67
71 72 0.530431 GGCACCTGCAACTGTTTTGG 60.530 55.000 0.00 0.00 44.36 3.28
72 73 0.871163 CGGCACCTGCAACTGTTTTG 60.871 55.000 0.00 0.00 44.36 2.44
73 74 1.034838 TCGGCACCTGCAACTGTTTT 61.035 50.000 0.00 0.00 44.36 2.43
74 75 1.453015 TCGGCACCTGCAACTGTTT 60.453 52.632 0.00 0.00 44.36 2.83
75 76 2.186826 GTCGGCACCTGCAACTGTT 61.187 57.895 0.00 0.00 44.36 3.16
76 77 2.591715 GTCGGCACCTGCAACTGT 60.592 61.111 0.00 0.00 44.36 3.55
77 78 3.716006 CGTCGGCACCTGCAACTG 61.716 66.667 0.00 0.00 44.36 3.16
78 79 3.240134 ATCGTCGGCACCTGCAACT 62.240 57.895 0.00 0.00 44.36 3.16
79 80 2.742372 ATCGTCGGCACCTGCAAC 60.742 61.111 0.00 0.00 44.36 4.17
80 81 2.741985 CATCGTCGGCACCTGCAA 60.742 61.111 0.00 0.00 44.36 4.08
83 84 4.758251 TGGCATCGTCGGCACCTG 62.758 66.667 0.00 0.00 36.38 4.00
84 85 4.457496 CTGGCATCGTCGGCACCT 62.457 66.667 0.00 0.00 36.38 4.00
85 86 4.760047 ACTGGCATCGTCGGCACC 62.760 66.667 0.00 0.00 36.38 5.01
86 87 3.490759 CACTGGCATCGTCGGCAC 61.491 66.667 0.00 0.00 36.38 5.01
97 98 1.826921 CCCCATCATCTGCACTGGC 60.827 63.158 0.00 0.00 41.68 4.85
98 99 0.465097 GACCCCATCATCTGCACTGG 60.465 60.000 0.00 0.00 0.00 4.00
99 100 0.812811 CGACCCCATCATCTGCACTG 60.813 60.000 0.00 0.00 0.00 3.66
100 101 0.977627 TCGACCCCATCATCTGCACT 60.978 55.000 0.00 0.00 0.00 4.40
101 102 0.107456 ATCGACCCCATCATCTGCAC 59.893 55.000 0.00 0.00 0.00 4.57
102 103 0.394192 GATCGACCCCATCATCTGCA 59.606 55.000 0.00 0.00 0.00 4.41
103 104 0.683973 AGATCGACCCCATCATCTGC 59.316 55.000 0.00 0.00 0.00 4.26
104 105 1.966354 TGAGATCGACCCCATCATCTG 59.034 52.381 0.00 0.00 30.16 2.90
105 106 2.388526 TGAGATCGACCCCATCATCT 57.611 50.000 0.00 0.00 31.67 2.90
106 107 2.366916 ACTTGAGATCGACCCCATCATC 59.633 50.000 0.00 0.00 0.00 2.92
107 108 2.103771 CACTTGAGATCGACCCCATCAT 59.896 50.000 0.00 0.00 0.00 2.45
108 109 1.482182 CACTTGAGATCGACCCCATCA 59.518 52.381 0.00 0.00 0.00 3.07
109 110 1.202580 CCACTTGAGATCGACCCCATC 60.203 57.143 0.00 0.00 0.00 3.51
110 111 0.833287 CCACTTGAGATCGACCCCAT 59.167 55.000 0.00 0.00 0.00 4.00
111 112 1.264749 CCCACTTGAGATCGACCCCA 61.265 60.000 0.00 0.00 0.00 4.96
112 113 0.976073 TCCCACTTGAGATCGACCCC 60.976 60.000 0.00 0.00 0.00 4.95
113 114 0.461961 CTCCCACTTGAGATCGACCC 59.538 60.000 0.00 0.00 34.11 4.46
114 115 1.187087 ACTCCCACTTGAGATCGACC 58.813 55.000 0.00 0.00 36.22 4.79
115 116 2.882324 GAACTCCCACTTGAGATCGAC 58.118 52.381 0.00 0.00 36.22 4.20
117 118 1.914634 CGAACTCCCACTTGAGATCG 58.085 55.000 6.37 6.37 46.36 3.69
118 119 2.732597 CGTCGAACTCCCACTTGAGATC 60.733 54.545 0.00 0.00 36.22 2.75
119 120 1.202582 CGTCGAACTCCCACTTGAGAT 59.797 52.381 0.00 0.00 36.22 2.75
120 121 0.596577 CGTCGAACTCCCACTTGAGA 59.403 55.000 0.00 0.00 36.22 3.27
121 122 0.596577 TCGTCGAACTCCCACTTGAG 59.403 55.000 0.00 0.00 38.37 3.02
122 123 0.596577 CTCGTCGAACTCCCACTTGA 59.403 55.000 0.00 0.00 0.00 3.02
123 124 0.388649 CCTCGTCGAACTCCCACTTG 60.389 60.000 0.00 0.00 0.00 3.16
124 125 0.538977 TCCTCGTCGAACTCCCACTT 60.539 55.000 0.00 0.00 0.00 3.16
125 126 0.538977 TTCCTCGTCGAACTCCCACT 60.539 55.000 0.00 0.00 0.00 4.00
126 127 0.388263 GTTCCTCGTCGAACTCCCAC 60.388 60.000 0.00 0.00 39.27 4.61
127 128 1.859427 CGTTCCTCGTCGAACTCCCA 61.859 60.000 13.03 0.00 40.03 4.37
128 129 1.154073 CGTTCCTCGTCGAACTCCC 60.154 63.158 13.03 0.00 40.03 4.30
129 130 4.454554 CGTTCCTCGTCGAACTCC 57.545 61.111 13.03 0.00 40.03 3.85
145 146 3.482722 AGACACATAGTAACGACCACG 57.517 47.619 0.00 0.00 45.75 4.94
146 147 5.119743 GGAAAAGACACATAGTAACGACCAC 59.880 44.000 0.00 0.00 0.00 4.16
147 148 5.011329 AGGAAAAGACACATAGTAACGACCA 59.989 40.000 0.00 0.00 0.00 4.02
148 149 5.347907 CAGGAAAAGACACATAGTAACGACC 59.652 44.000 0.00 0.00 0.00 4.79
149 150 6.154445 TCAGGAAAAGACACATAGTAACGAC 58.846 40.000 0.00 0.00 0.00 4.34
150 151 6.335471 TCAGGAAAAGACACATAGTAACGA 57.665 37.500 0.00 0.00 0.00 3.85
151 152 6.811665 TCATCAGGAAAAGACACATAGTAACG 59.188 38.462 0.00 0.00 0.00 3.18
152 153 8.723942 ATCATCAGGAAAAGACACATAGTAAC 57.276 34.615 0.00 0.00 0.00 2.50
153 154 8.539544 TGATCATCAGGAAAAGACACATAGTAA 58.460 33.333 0.00 0.00 0.00 2.24
154 155 8.078060 TGATCATCAGGAAAAGACACATAGTA 57.922 34.615 0.00 0.00 0.00 1.82
155 156 6.950842 TGATCATCAGGAAAAGACACATAGT 58.049 36.000 0.00 0.00 0.00 2.12
156 157 7.479897 CTGATCATCAGGAAAAGACACATAG 57.520 40.000 6.78 0.00 40.71 2.23
171 172 2.042464 GGGCTCCACTACTGATCATCA 58.958 52.381 0.00 0.00 0.00 3.07
172 173 2.036992 CTGGGCTCCACTACTGATCATC 59.963 54.545 0.00 0.00 0.00 2.92
173 174 2.045524 CTGGGCTCCACTACTGATCAT 58.954 52.381 0.00 0.00 0.00 2.45
174 175 1.273267 ACTGGGCTCCACTACTGATCA 60.273 52.381 0.00 0.00 0.00 2.92
175 176 1.490574 ACTGGGCTCCACTACTGATC 58.509 55.000 0.00 0.00 0.00 2.92
176 177 1.556911 CAACTGGGCTCCACTACTGAT 59.443 52.381 0.00 0.00 0.00 2.90
177 178 0.976641 CAACTGGGCTCCACTACTGA 59.023 55.000 0.00 0.00 0.00 3.41
178 179 0.036010 CCAACTGGGCTCCACTACTG 60.036 60.000 0.00 0.00 0.00 2.74
179 180 2.377136 CCAACTGGGCTCCACTACT 58.623 57.895 0.00 0.00 0.00 2.57
190 191 1.635817 ATCCCCATCGTCCCAACTGG 61.636 60.000 0.00 0.00 0.00 4.00
191 192 0.179045 GATCCCCATCGTCCCAACTG 60.179 60.000 0.00 0.00 0.00 3.16
192 193 0.326618 AGATCCCCATCGTCCCAACT 60.327 55.000 0.00 0.00 33.75 3.16
193 194 1.344763 CTAGATCCCCATCGTCCCAAC 59.655 57.143 0.00 0.00 33.75 3.77
194 195 1.717032 CTAGATCCCCATCGTCCCAA 58.283 55.000 0.00 0.00 33.75 4.12
195 196 0.832135 GCTAGATCCCCATCGTCCCA 60.832 60.000 0.00 0.00 33.75 4.37
196 197 0.832135 TGCTAGATCCCCATCGTCCC 60.832 60.000 0.00 0.00 33.75 4.46
197 198 1.270907 ATGCTAGATCCCCATCGTCC 58.729 55.000 0.00 0.00 33.75 4.79
198 199 3.070018 CAAATGCTAGATCCCCATCGTC 58.930 50.000 0.00 0.00 33.75 4.20
199 200 2.224621 CCAAATGCTAGATCCCCATCGT 60.225 50.000 0.00 0.00 33.75 3.73
200 201 2.430465 CCAAATGCTAGATCCCCATCG 58.570 52.381 0.00 0.00 33.75 3.84
201 202 2.556114 CCCCAAATGCTAGATCCCCATC 60.556 54.545 0.00 0.00 0.00 3.51
202 203 1.430464 CCCCAAATGCTAGATCCCCAT 59.570 52.381 0.00 0.00 0.00 4.00
203 204 0.852842 CCCCAAATGCTAGATCCCCA 59.147 55.000 0.00 0.00 0.00 4.96
204 205 0.853530 ACCCCAAATGCTAGATCCCC 59.146 55.000 0.00 0.00 0.00 4.81
205 206 2.310538 CAACCCCAAATGCTAGATCCC 58.689 52.381 0.00 0.00 0.00 3.85
206 207 2.952310 GACAACCCCAAATGCTAGATCC 59.048 50.000 0.00 0.00 0.00 3.36
207 208 3.891049 AGACAACCCCAAATGCTAGATC 58.109 45.455 0.00 0.00 0.00 2.75
208 209 4.322057 AAGACAACCCCAAATGCTAGAT 57.678 40.909 0.00 0.00 0.00 1.98
209 210 3.806949 AAGACAACCCCAAATGCTAGA 57.193 42.857 0.00 0.00 0.00 2.43
210 211 4.589908 ACTAAGACAACCCCAAATGCTAG 58.410 43.478 0.00 0.00 0.00 3.42
211 212 4.650972 ACTAAGACAACCCCAAATGCTA 57.349 40.909 0.00 0.00 0.00 3.49
212 213 3.525800 ACTAAGACAACCCCAAATGCT 57.474 42.857 0.00 0.00 0.00 3.79
213 214 4.038642 TGAAACTAAGACAACCCCAAATGC 59.961 41.667 0.00 0.00 0.00 3.56
214 215 5.782893 TGAAACTAAGACAACCCCAAATG 57.217 39.130 0.00 0.00 0.00 2.32
215 216 6.209391 CAGATGAAACTAAGACAACCCCAAAT 59.791 38.462 0.00 0.00 0.00 2.32
216 217 5.534654 CAGATGAAACTAAGACAACCCCAAA 59.465 40.000 0.00 0.00 0.00 3.28
217 218 5.070001 CAGATGAAACTAAGACAACCCCAA 58.930 41.667 0.00 0.00 0.00 4.12
218 219 4.506625 CCAGATGAAACTAAGACAACCCCA 60.507 45.833 0.00 0.00 0.00 4.96
219 220 4.010349 CCAGATGAAACTAAGACAACCCC 58.990 47.826 0.00 0.00 0.00 4.95
220 221 4.906618 TCCAGATGAAACTAAGACAACCC 58.093 43.478 0.00 0.00 0.00 4.11
221 222 6.410540 AGATCCAGATGAAACTAAGACAACC 58.589 40.000 0.00 0.00 0.00 3.77
222 223 7.604164 TCAAGATCCAGATGAAACTAAGACAAC 59.396 37.037 0.00 0.00 0.00 3.32
223 224 7.604164 GTCAAGATCCAGATGAAACTAAGACAA 59.396 37.037 0.00 0.00 0.00 3.18
224 225 7.099764 GTCAAGATCCAGATGAAACTAAGACA 58.900 38.462 0.00 0.00 0.00 3.41
225 226 6.536941 GGTCAAGATCCAGATGAAACTAAGAC 59.463 42.308 0.00 0.00 0.00 3.01
226 227 6.628175 CGGTCAAGATCCAGATGAAACTAAGA 60.628 42.308 0.00 0.00 0.00 2.10
227 228 5.521735 CGGTCAAGATCCAGATGAAACTAAG 59.478 44.000 0.00 0.00 0.00 2.18
228 229 5.046591 ACGGTCAAGATCCAGATGAAACTAA 60.047 40.000 0.00 0.00 0.00 2.24
229 230 4.466370 ACGGTCAAGATCCAGATGAAACTA 59.534 41.667 0.00 0.00 0.00 2.24
230 231 3.261897 ACGGTCAAGATCCAGATGAAACT 59.738 43.478 0.00 0.00 0.00 2.66
231 232 3.600388 ACGGTCAAGATCCAGATGAAAC 58.400 45.455 0.00 0.00 0.00 2.78
232 233 3.981071 ACGGTCAAGATCCAGATGAAA 57.019 42.857 0.00 0.00 0.00 2.69
233 234 3.181475 GCTACGGTCAAGATCCAGATGAA 60.181 47.826 0.00 0.00 0.00 2.57
234 235 2.362397 GCTACGGTCAAGATCCAGATGA 59.638 50.000 0.00 0.00 0.00 2.92
235 236 2.546795 GGCTACGGTCAAGATCCAGATG 60.547 54.545 0.00 0.00 0.00 2.90
236 237 1.689273 GGCTACGGTCAAGATCCAGAT 59.311 52.381 0.00 0.00 0.00 2.90
237 238 1.112113 GGCTACGGTCAAGATCCAGA 58.888 55.000 0.00 0.00 0.00 3.86
238 239 0.249073 CGGCTACGGTCAAGATCCAG 60.249 60.000 0.00 0.00 36.18 3.86
239 240 1.813859 CGGCTACGGTCAAGATCCA 59.186 57.895 0.00 0.00 36.18 3.41
240 241 4.732106 CGGCTACGGTCAAGATCC 57.268 61.111 0.00 0.00 36.18 3.36
250 251 3.973657 ACAAACATATAGACCGGCTACG 58.026 45.455 0.00 0.00 40.55 3.51
251 252 7.958053 AAATACAAACATATAGACCGGCTAC 57.042 36.000 0.00 0.00 0.00 3.58
252 253 7.442969 CCAAAATACAAACATATAGACCGGCTA 59.557 37.037 0.00 4.49 0.00 3.93
253 254 6.262273 CCAAAATACAAACATATAGACCGGCT 59.738 38.462 0.00 1.78 0.00 5.52
254 255 6.261381 TCCAAAATACAAACATATAGACCGGC 59.739 38.462 0.00 0.00 0.00 6.13
255 256 7.795482 TCCAAAATACAAACATATAGACCGG 57.205 36.000 0.00 0.00 0.00 5.28
256 257 9.051679 TCATCCAAAATACAAACATATAGACCG 57.948 33.333 0.00 0.00 0.00 4.79
265 266 9.460019 TCTCATACATCATCCAAAATACAAACA 57.540 29.630 0.00 0.00 0.00 2.83
292 293 8.769891 CGCCACTTCACACAATACATAAATATA 58.230 33.333 0.00 0.00 0.00 0.86
293 294 7.497579 TCGCCACTTCACACAATACATAAATAT 59.502 33.333 0.00 0.00 0.00 1.28
294 295 6.819146 TCGCCACTTCACACAATACATAAATA 59.181 34.615 0.00 0.00 0.00 1.40
295 296 5.645929 TCGCCACTTCACACAATACATAAAT 59.354 36.000 0.00 0.00 0.00 1.40
296 297 4.998033 TCGCCACTTCACACAATACATAAA 59.002 37.500 0.00 0.00 0.00 1.40
297 298 4.570930 TCGCCACTTCACACAATACATAA 58.429 39.130 0.00 0.00 0.00 1.90
298 299 4.195225 TCGCCACTTCACACAATACATA 57.805 40.909 0.00 0.00 0.00 2.29
299 300 3.052455 TCGCCACTTCACACAATACAT 57.948 42.857 0.00 0.00 0.00 2.29
300 301 2.535012 TCGCCACTTCACACAATACA 57.465 45.000 0.00 0.00 0.00 2.29
301 302 3.188460 ACAATCGCCACTTCACACAATAC 59.812 43.478 0.00 0.00 0.00 1.89
302 303 3.407698 ACAATCGCCACTTCACACAATA 58.592 40.909 0.00 0.00 0.00 1.90
303 304 2.229792 ACAATCGCCACTTCACACAAT 58.770 42.857 0.00 0.00 0.00 2.71
304 305 1.674359 ACAATCGCCACTTCACACAA 58.326 45.000 0.00 0.00 0.00 3.33
305 306 2.535012 TACAATCGCCACTTCACACA 57.465 45.000 0.00 0.00 0.00 3.72
306 307 2.412847 GCTTACAATCGCCACTTCACAC 60.413 50.000 0.00 0.00 0.00 3.82
307 308 1.804151 GCTTACAATCGCCACTTCACA 59.196 47.619 0.00 0.00 0.00 3.58
308 309 1.130561 GGCTTACAATCGCCACTTCAC 59.869 52.381 0.00 0.00 45.59 3.18
309 310 1.448985 GGCTTACAATCGCCACTTCA 58.551 50.000 0.00 0.00 45.59 3.02
315 316 1.739067 AGAGTTGGCTTACAATCGCC 58.261 50.000 0.00 0.00 46.46 5.54
316 317 3.831715 AAAGAGTTGGCTTACAATCGC 57.168 42.857 0.00 0.00 41.95 4.58
317 318 5.007724 GGGATAAAGAGTTGGCTTACAATCG 59.992 44.000 0.00 0.00 41.95 3.34
318 319 5.885912 TGGGATAAAGAGTTGGCTTACAATC 59.114 40.000 0.00 0.00 41.95 2.67
319 320 5.826643 TGGGATAAAGAGTTGGCTTACAAT 58.173 37.500 0.00 0.00 41.95 2.71
320 321 5.249780 TGGGATAAAGAGTTGGCTTACAA 57.750 39.130 0.00 0.00 36.54 2.41
321 322 4.919774 TGGGATAAAGAGTTGGCTTACA 57.080 40.909 0.00 0.00 0.00 2.41
322 323 6.122964 AGAATGGGATAAAGAGTTGGCTTAC 58.877 40.000 0.00 0.00 0.00 2.34
323 324 6.327386 AGAATGGGATAAAGAGTTGGCTTA 57.673 37.500 0.00 0.00 0.00 3.09
324 325 5.198602 AGAATGGGATAAAGAGTTGGCTT 57.801 39.130 0.00 0.00 0.00 4.35
325 326 4.870021 AGAATGGGATAAAGAGTTGGCT 57.130 40.909 0.00 0.00 0.00 4.75
326 327 4.706962 ACAAGAATGGGATAAAGAGTTGGC 59.293 41.667 0.00 0.00 0.00 4.52
327 328 6.434028 TGAACAAGAATGGGATAAAGAGTTGG 59.566 38.462 0.00 0.00 0.00 3.77
328 329 7.452880 TGAACAAGAATGGGATAAAGAGTTG 57.547 36.000 0.00 0.00 0.00 3.16
329 330 8.655935 AATGAACAAGAATGGGATAAAGAGTT 57.344 30.769 0.00 0.00 0.00 3.01
330 331 9.178758 GTAATGAACAAGAATGGGATAAAGAGT 57.821 33.333 0.00 0.00 0.00 3.24
331 332 9.177608 TGTAATGAACAAGAATGGGATAAAGAG 57.822 33.333 0.00 0.00 34.29 2.85
332 333 9.699410 ATGTAATGAACAAGAATGGGATAAAGA 57.301 29.630 0.00 0.00 42.70 2.52
351 352 6.319405 TCATCTTCACACAATCCCATGTAATG 59.681 38.462 0.00 0.00 46.21 1.90
352 353 6.319658 GTCATCTTCACACAATCCCATGTAAT 59.680 38.462 0.00 0.00 30.84 1.89
353 354 5.647658 GTCATCTTCACACAATCCCATGTAA 59.352 40.000 0.00 0.00 30.84 2.41
354 355 5.185454 GTCATCTTCACACAATCCCATGTA 58.815 41.667 0.00 0.00 30.84 2.29
355 356 4.012374 GTCATCTTCACACAATCCCATGT 58.988 43.478 0.00 0.00 0.00 3.21
356 357 3.379372 GGTCATCTTCACACAATCCCATG 59.621 47.826 0.00 0.00 0.00 3.66
357 358 3.624777 GGTCATCTTCACACAATCCCAT 58.375 45.455 0.00 0.00 0.00 4.00
358 359 2.290896 GGGTCATCTTCACACAATCCCA 60.291 50.000 0.00 0.00 33.33 4.37
359 360 2.025887 AGGGTCATCTTCACACAATCCC 60.026 50.000 0.00 0.00 0.00 3.85
360 361 3.356529 AGGGTCATCTTCACACAATCC 57.643 47.619 0.00 0.00 0.00 3.01
361 362 4.583871 AGAAGGGTCATCTTCACACAATC 58.416 43.478 7.26 0.00 44.01 2.67
362 363 4.647564 AGAAGGGTCATCTTCACACAAT 57.352 40.909 7.26 0.00 44.01 2.71
363 364 4.136796 CAAGAAGGGTCATCTTCACACAA 58.863 43.478 7.26 0.00 44.01 3.33
364 365 3.743521 CAAGAAGGGTCATCTTCACACA 58.256 45.455 7.26 0.00 44.01 3.72
365 366 2.485814 GCAAGAAGGGTCATCTTCACAC 59.514 50.000 7.26 0.00 44.01 3.82
366 367 2.783135 GCAAGAAGGGTCATCTTCACA 58.217 47.619 7.26 0.00 44.01 3.58
367 368 1.734465 CGCAAGAAGGGTCATCTTCAC 59.266 52.381 7.26 0.00 44.01 3.18
368 369 2.099141 CGCAAGAAGGGTCATCTTCA 57.901 50.000 7.26 0.00 44.01 3.02
382 383 2.584791 GCATAGTGGTTTTGTCGCAAG 58.415 47.619 0.00 0.00 0.00 4.01
383 384 1.069568 CGCATAGTGGTTTTGTCGCAA 60.070 47.619 0.00 0.00 0.00 4.85
384 385 0.515127 CGCATAGTGGTTTTGTCGCA 59.485 50.000 0.00 0.00 0.00 5.10
385 386 0.179200 CCGCATAGTGGTTTTGTCGC 60.179 55.000 0.00 0.00 0.00 5.19
386 387 1.153353 ACCGCATAGTGGTTTTGTCG 58.847 50.000 0.00 0.00 44.78 4.35
394 395 1.070758 AGAGGCATAACCGCATAGTGG 59.929 52.381 0.00 0.00 46.52 4.00
395 396 2.533266 AGAGGCATAACCGCATAGTG 57.467 50.000 0.00 0.00 46.52 2.74
396 397 3.641906 ACTTAGAGGCATAACCGCATAGT 59.358 43.478 0.00 0.00 46.52 2.12
397 398 4.238514 GACTTAGAGGCATAACCGCATAG 58.761 47.826 0.00 0.00 46.52 2.23
398 399 3.305131 CGACTTAGAGGCATAACCGCATA 60.305 47.826 0.00 0.00 46.52 3.14
399 400 2.545952 CGACTTAGAGGCATAACCGCAT 60.546 50.000 0.00 0.00 46.52 4.73
400 401 1.202371 CGACTTAGAGGCATAACCGCA 60.202 52.381 0.00 0.00 46.52 5.69
401 402 1.202382 ACGACTTAGAGGCATAACCGC 60.202 52.381 0.00 0.00 46.52 5.68
402 403 2.460918 CACGACTTAGAGGCATAACCG 58.539 52.381 0.00 0.00 46.52 4.44
403 404 2.202566 GCACGACTTAGAGGCATAACC 58.797 52.381 0.00 0.00 39.61 2.85
404 405 2.159085 AGGCACGACTTAGAGGCATAAC 60.159 50.000 0.00 0.00 0.00 1.89
405 406 2.100916 GAGGCACGACTTAGAGGCATAA 59.899 50.000 0.00 0.00 0.00 1.90
406 407 1.681793 GAGGCACGACTTAGAGGCATA 59.318 52.381 0.00 0.00 0.00 3.14
407 408 0.461961 GAGGCACGACTTAGAGGCAT 59.538 55.000 0.00 0.00 0.00 4.40
408 409 1.890894 GAGGCACGACTTAGAGGCA 59.109 57.895 0.00 0.00 0.00 4.75
409 410 1.226717 CGAGGCACGACTTAGAGGC 60.227 63.158 0.00 0.00 45.77 4.70
410 411 2.478989 TCGAGGCACGACTTAGAGG 58.521 57.895 2.07 0.00 46.45 3.69
420 421 3.916392 CTCCCACGTGTCGAGGCAC 62.916 68.421 15.65 0.00 36.35 5.01
421 422 3.680786 CTCCCACGTGTCGAGGCA 61.681 66.667 15.65 0.00 36.35 4.75
422 423 1.381928 TATCTCCCACGTGTCGAGGC 61.382 60.000 22.62 0.00 36.35 4.70
423 424 1.319541 ATATCTCCCACGTGTCGAGG 58.680 55.000 22.62 14.20 37.35 4.63
424 425 2.095668 GCTATATCTCCCACGTGTCGAG 60.096 54.545 15.65 17.66 0.00 4.04
425 426 1.878088 GCTATATCTCCCACGTGTCGA 59.122 52.381 15.65 8.55 0.00 4.20
426 427 1.068472 GGCTATATCTCCCACGTGTCG 60.068 57.143 15.65 4.04 0.00 4.35
427 428 1.068472 CGGCTATATCTCCCACGTGTC 60.068 57.143 15.65 0.00 0.00 3.67
428 429 0.959553 CGGCTATATCTCCCACGTGT 59.040 55.000 15.65 0.00 0.00 4.49
429 430 0.388649 GCGGCTATATCTCCCACGTG 60.389 60.000 9.08 9.08 0.00 4.49
430 431 0.826256 TGCGGCTATATCTCCCACGT 60.826 55.000 0.00 0.00 0.00 4.49
431 432 0.532573 ATGCGGCTATATCTCCCACG 59.467 55.000 0.00 0.00 0.00 4.94
432 433 1.469940 CGATGCGGCTATATCTCCCAC 60.470 57.143 0.00 0.00 0.00 4.61
433 434 0.817654 CGATGCGGCTATATCTCCCA 59.182 55.000 0.00 0.00 0.00 4.37
434 435 0.818296 ACGATGCGGCTATATCTCCC 59.182 55.000 0.00 0.00 0.00 4.30
435 436 1.469940 CCACGATGCGGCTATATCTCC 60.470 57.143 0.00 0.00 0.00 3.71
436 437 1.469940 CCCACGATGCGGCTATATCTC 60.470 57.143 0.00 0.00 0.00 2.75
437 438 0.532573 CCCACGATGCGGCTATATCT 59.467 55.000 0.00 0.00 0.00 1.98
438 439 1.084370 GCCCACGATGCGGCTATATC 61.084 60.000 0.00 0.00 42.21 1.63
439 440 1.079127 GCCCACGATGCGGCTATAT 60.079 57.895 0.00 0.00 42.21 0.86
440 441 2.342279 GCCCACGATGCGGCTATA 59.658 61.111 0.00 0.00 42.21 1.31
447 448 1.570347 TTGTGTAACGCCCACGATGC 61.570 55.000 0.00 0.00 42.39 3.91
448 449 0.442310 CTTGTGTAACGCCCACGATG 59.558 55.000 0.00 0.00 42.39 3.84
449 450 1.296056 GCTTGTGTAACGCCCACGAT 61.296 55.000 0.00 0.00 42.39 3.73
450 451 1.957186 GCTTGTGTAACGCCCACGA 60.957 57.895 0.00 0.00 42.39 4.35
451 452 2.248135 TGCTTGTGTAACGCCCACG 61.248 57.895 0.00 0.00 42.39 4.94
452 453 1.281656 GTGCTTGTGTAACGCCCAC 59.718 57.895 0.00 0.00 42.39 4.61
453 454 1.153147 TGTGCTTGTGTAACGCCCA 60.153 52.632 0.00 0.00 42.39 5.36
454 455 1.281656 GTGTGCTTGTGTAACGCCC 59.718 57.895 0.00 0.00 42.39 6.13
455 456 1.083015 CGTGTGCTTGTGTAACGCC 60.083 57.895 0.00 0.00 42.39 5.68
456 457 0.302288 TTCGTGTGCTTGTGTAACGC 59.698 50.000 0.00 0.00 42.39 4.84
457 458 2.941891 ATTCGTGTGCTTGTGTAACG 57.058 45.000 0.00 0.00 42.39 3.18
458 459 3.728718 CCAAATTCGTGTGCTTGTGTAAC 59.271 43.478 0.00 0.00 37.35 2.50
459 460 3.628032 TCCAAATTCGTGTGCTTGTGTAA 59.372 39.130 0.00 0.00 0.00 2.41
460 461 3.002862 GTCCAAATTCGTGTGCTTGTGTA 59.997 43.478 0.00 0.00 0.00 2.90
461 462 2.020720 TCCAAATTCGTGTGCTTGTGT 58.979 42.857 0.00 0.00 0.00 3.72
462 463 2.384382 GTCCAAATTCGTGTGCTTGTG 58.616 47.619 0.00 0.00 0.00 3.33
466 467 1.880027 GAAGGTCCAAATTCGTGTGCT 59.120 47.619 0.00 0.00 0.00 4.40
524 835 5.326292 GCATGCAATATTTTTGAAAGGTGC 58.674 37.500 14.21 0.00 0.00 5.01
682 1001 2.478292 TCCTCCCGCTTTAATTCCTCT 58.522 47.619 0.00 0.00 0.00 3.69
782 1119 5.047566 TGACAAAGGAGAGGTCAAATCAA 57.952 39.130 0.00 0.00 38.50 2.57
944 1288 4.327982 TTGCTATAGCTGTGATGGAGAC 57.672 45.455 24.61 0.00 42.66 3.36
1147 1503 2.107378 TGGGTGTGCATCTAGAAACCAA 59.893 45.455 0.00 0.00 0.00 3.67
1219 1576 3.285484 CATCAAACTTCATCTCCCTGGG 58.715 50.000 6.33 6.33 0.00 4.45
1220 1577 3.054139 TCCATCAAACTTCATCTCCCTGG 60.054 47.826 0.00 0.00 0.00 4.45
1397 1754 2.159382 GAATTCGCAACTCCTTTCCCA 58.841 47.619 0.00 0.00 0.00 4.37
2198 2572 1.267732 GCTCGAAAAGCCGACATCATG 60.268 52.381 0.00 0.00 45.92 3.07
2350 2724 3.266772 TGTCCCTAATCAGGAATGCTTGT 59.733 43.478 0.00 0.00 45.91 3.16
2379 2754 5.293079 GCGCAGGAATCTATATTTCCATCTC 59.707 44.000 0.30 1.43 44.25 2.75
2593 2972 4.949856 GTGATCCATTTGAACCTGGTGTAT 59.050 41.667 0.00 0.00 34.03 2.29
2887 3273 6.648310 TCTTGTAGAATAATGCAGCTAGATGC 59.352 38.462 25.74 25.74 46.68 3.91
2888 3274 7.654923 TGTCTTGTAGAATAATGCAGCTAGATG 59.345 37.037 2.90 2.90 0.00 2.90
2889 3275 7.730084 TGTCTTGTAGAATAATGCAGCTAGAT 58.270 34.615 0.00 0.00 0.00 1.98
2890 3276 7.112452 TGTCTTGTAGAATAATGCAGCTAGA 57.888 36.000 0.00 0.00 0.00 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.